Citrus Sinensis ID: 015891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MGQVSQNGEIGGSSSDGGDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQTPATEGESNSVEPTGSIVNA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEEcccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHcccccccEEEEEcccHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccccccccccEccccEEcccHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHccHHHHHcccEEEEEEEEcccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccEEEEEEcccccHcHHHHHccccccccccEEEEEEccHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHcccccccccccHHHHHHHHHHHHHHccHHcccccccHccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mgqvsqngeiggsssdggdkskpeetnvpkvskskppanvhgfANEELHLQKLLSnrgtddqfrAIGVVGVagvgkttlcqrifhkpdvktqfvpriwvctmsgqkTAESIVKRILKRlgvddgttnsfegqgLAFLDYVLQQQLIGKrylivlddfedMEVCKHLSkvlprgygerlIITSRNeklttemvgeenlhqlqplsdqescwliyrdsVRDKDAQLKSQARKDLEEKLEKLQgqnedavnfpsSKQLVEELGKLQGENTKLMERKRSIlrdsanlpnskQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVaanrrpepetqeqdaqtpategesnsveptgsivna
Flexible Loop (DISEMBL)
mgqvsqngeiggsssdggdkskpeetnvpkvskskppanVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTlcqrifhkpdvktqfvpRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLskvlprgygerlIITSRNEKLTTEMVGEenlhqlqplsdqESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKlqgqnedavnfpssKQLVEELGklqgentklmerkrsilrdsanlpnskqleeEVEKLQGQITKMIEEKRAKQREQRKnaeelkrkcgglplAAKLLGEIKAQEELRRKEKLLKDILDEIERvvaanrrpepetqeqdaqtpategesnsveptgsivna
Low Complexity Region (SEG)
MGQVSQNGEIggsssdggdkskPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIgvvgvagvgKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQTPATEGESNSVEPTGSIVNA
Disordered region (IsUnstruct)
***********************************************LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT*MV*************QESCWLIYRD***************************************************************************************************************GLPLAAKLLGEI***********LLKDILDEIER**************************************
Disordered Region (DISOPRED)
****SQN*****************************PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG**************AFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAA****************************GS*V**
Disordered Region (DISEMBL)
***********************************PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEK*************LKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANR********************************
Disordered Region (DISPRO)
*****QNGE*G*********************KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANR********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQVSQNGEIGGSSSDGGDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxPSxxxxxxxxxxxxxxxxxxxxxKRSILRDSANLPNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGGLPLAAKLLGxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRRPEPETQEQDAQTPATEGESNSVEPTGSIVNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q84WD3	383	Probable disease resistan	yes	no	0.527	0.548	0.370	9e-35
Q9FHI7	354	Probable disease resistan	no	no	0.515	0.579	0.328	9e-28
Q9FHJ2	346	Probable disease resistan	no	no	0.660	0.760	0.295	5e-27
Q38834	852	Disease resistance RPP13-	no	no	0.376	0.176	0.327	3e-16
Q7XA40	992	Putative disease resistan	N/A	no	0.407	0.163	0.353	4e-15
Q7XA42	979	Putative disease resistan	N/A	no	0.404	0.164	0.333	6e-14
Q8W4J9	908	Disease resistance protei	no	no	0.361	0.158	0.320	2e-13
Q9FJK8	908	Probable disease resistan	no	no	0.381	0.167	0.307	3e-13
P59584	910	Disease resistance protei	no	no	0.371	0.162	0.310	6e-13
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.296	0.130	0.367	8e-13

>sp|Q84WD3|DRL26_ARATH Probable disease resistance protein At4g19060 OS=Arabidopsis thaliana GN=At4g19060 PE=2 SV=2

 Score =  148 bits (373), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 139/270 (51%), Gaps = 60/270 (22%)

Query: 7   NGEIGGSSSDGGDKS-----KPEETNVPKVSKSKPPAN------------VHGFANEELH 49
           +G+  GSSS  G++S      P   +     K +P AN            + GF NE+L 
Sbjct: 41  SGKQRGSSSKHGNQSTHGDSSPTRNSSGSSKKGRPKANRVETSSELPDHLIRGFINEKLF 100

Query: 50  LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE 109
           L+  L  +   ++F+ + +VG  GVGKTTLCQ +F+  DVK  + PRIWV +M  ++T E
Sbjct: 101 LKNFLLKQKESEEFKTLAIVGKYGVGKTTLCQAVFNDEDVKQVYFPRIWV-SMYSKETKE 159

Query: 110 ------SIVKRILKRLGVDDGTTNSFEGQG----------------------LAFLDYVL 141
                  +VKRIL+ LGV+D      + +                       LA L Y L
Sbjct: 160 DEDPKIDVVKRILRSLGVEDEMFKHIKTEAEEEKSIKDEAGEREEETVKEKELARLLYAL 219

Query: 142 QQQLIGKRYLIVLDD-FEDMEVCK------------HLSKVLPRGYGERLIITSRNEKLT 188
              LIGK+YLIVLDD +ED E  +            HLS   P+G+G ++I+TSR+E+L 
Sbjct: 220 HLNLIGKKYLIVLDDVWEDNEWDQRLDDEKKQQEKSHLSCGFPKGFGGKVIMTSRDERLA 279

Query: 189 TEMVG-EENLHQLQPLSDQESCWLIYRDSV 217
             +VG EENL +L P SD ES W IY D+V
Sbjct: 280 KAIVGEEENLQRLFPRSDAESLWEIYIDAV 309

Possible disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHI7|DRL35_ARATH Probable disease resistance protein At5g45490 OS=Arabidopsis thaliana GN=At5g45490 PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 51/256 (19%)

Query: 36  PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP 95
           P  ++HGF NE   LQ  L ++    +F+++ +VG  GVGKT LCQ+IF+   VK+ + P
Sbjct: 57  PGHDIHGFDNEIKSLQHFLLDQKVRREFKSLVIVGEYGVGKTALCQKIFNDEAVKSVYAP 116

Query: 96  RIWVCTMSGQKTAE------SIVKRILKRLGV-----------------DDGTTNSFEGQ 132
           R+WV +M  +++ E       ++K+ILK LGV                 D+    S +  
Sbjct: 117 RVWV-SMENKESKEGLDGKICVLKKILKGLGVEELILETISTDAKQEFKDNEEVASNQEA 175

Query: 133 G-----------LAFLDYVLQQQLIGKRYLIVLDDF---------------EDMEVCKHL 166
           G           L+ L Y L   L  K+YLIV DD                ED +  K+L
Sbjct: 176 GEIDRETEKEKELSALLYALHLNLRWKKYLIVFDDVRENDNWDEKLDAKLKEDEKWGKYL 235

Query: 167 SKVLPRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYRDSVRDKDAQLK 225
           S   P+G G R+I T+R+E L   +V +++ +H+L PLSD +S W IY   V+DK  +  
Sbjct: 236 SDGFPKGSGGRVIYTTRDENLAKNLVAQKHEIHRLWPLSDHQSVWKIYDAVVKDKQKESP 295

Query: 226 SQARKDLEEKLEKLQG 241
              +K ++E + K +G
Sbjct: 296 RNDKKCIDELMNKSRG 311

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHJ2|DRL34_ARATH Probable disease resistance protein At5g45440 OS=Arabidopsis thaliana GN=At5g45440 PE=2 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 154/315 (48%), Gaps = 52/315 (16%)

Query: 18  GDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKT 77
           GD++K  E  V +     P  +++GF NE   LQ  L ++ +   F+++ VVG  GVGKT
Sbjct: 34  GDETKQVEDRV-ETDSGLPGHDIYGFENEIKSLQHFLLDQKSYKLFKSLVVVGEYGVGKT 92

Query: 78  TLCQRIFHKPDVKTQFVPRIWVCTMS-----GQKTAESIVKRILKRLGVDDGTTNS---- 128
            LCQ+IF+  DV+  + PRIWV   S     G      ++K ILK LGV++    S    
Sbjct: 93  ALCQQIFNDYDVRNAYAPRIWVSMHSNESKEGLDGKICVLKTILKGLGVEESMFESIHRE 152

Query: 129 -------------FEGQG-----LAFLDYVLQQQLIGKRYLIVLDDFEDMEVC------- 163
                         +G+      ++ L Y L   L  K+YLIV DD ++++         
Sbjct: 153 VVEEVSNRQEAGEIDGETAKEKEISALLYALHLNLRWKKYLIVFDDVQEIDNWDEKLDAK 212

Query: 164 --------KHLSKVLPRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYR 214
                   K+LS   P+G G R+I T+R+E L   +V +++ +H+L PLSD  S W IY 
Sbjct: 213 LNEGEKWGKYLSDGFPKGSGGRVIYTTRDENLAKNLVVQKHEIHRLWPLSDSNSVWKIYE 272

Query: 215 DSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMER-K 273
             ++ ++ +     +K ++E + K +G        P + +L+ EL  +  ++ K  +   
Sbjct: 273 AMIQKREKESPRNDKKCIDELMNKSRG-------LPLAARLLAELDPMLFDDGKANQNGS 325

Query: 274 RSILRDSANLPNSKQ 288
           +    DS + PNS++
Sbjct: 326 KDGKTDSVDNPNSEE 340

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 9/159 (5%)

Query: 57  RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116
           R  D Q   +  VG+ G+GKTT+ Q +F+  +++ +F  RIWV ++S   T E I++ IL
Sbjct: 176 RSNDSQLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWV-SVSQTFTEEQIMRSIL 234

Query: 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLPRGY 174
           + LG      ++  G  +  L   +QQ L+GKRYLIV+DD  D  +     + + LPRG 
Sbjct: 235 RNLG------DASVGDDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRGQ 288

Query: 175 GERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIY 213
           G  +I+T+R+E +   +   ++      L   ++ WL++
Sbjct: 289 GGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLF 327

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 22/184 (11%)

Query: 40  VHGFANEELHLQKLL-SNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW 98
           V+G   EE  + K+L +N    ++   + ++G+ G+GKTTL Q +F+   +   F  +IW
Sbjct: 151 VYGREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIW 210

Query: 99  VCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV-----LQQQLIGKRYLIV 153
           VC +S     + ++K I++          S EG+ L  +D       LQ+ L GKRY +V
Sbjct: 211 VC-VSDDFDEKRLIKAIVE----------SIEGKSLGDMDLAPLQKKLQELLNGKRYFLV 259

Query: 154 LDDF--EDMEVCKHLSKVLPRGY-GERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCW 210
           LDD   ED E   +L  VL  G  G  ++IT+R EK+ + M G   L+QL  LS QE CW
Sbjct: 260 LDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIM-GTLQLYQLSNLS-QEDCW 317

Query: 211 LIYR 214
           L+++
Sbjct: 318 LLFK 321

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 22/183 (12%)

Query: 40  VHGFANEELHLQKLLSNRGTDDQ-FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW 98
           V+G   E+  + K+L N  +D Q    + ++G+ G+GKTTL Q +F+   V  +F P+IW
Sbjct: 151 VYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIW 210

Query: 99  VCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV-----LQQQLIGKRYLIV 153
           +C +S     + ++K I++          S EG+ L+ +D       LQ+ L GKRY +V
Sbjct: 211 IC-ISDDFNEKRLIKAIVE----------SIEGKSLSDMDLAPLQKKLQELLNGKRYFLV 259

Query: 154 LDDF--EDMEVCKHLSKVLPRGY-GERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCW 210
           LDD   ED     +L  VL  G  G  ++ T+R EK+ + M G    ++L  LS  E CW
Sbjct: 260 LDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIM-GTLQPYELSNLS-PEDCW 317

Query: 211 LIY 213
            ++
Sbjct: 318 FLF 320

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 18/162 (11%)

Query: 31  VSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVK 90
           + ++ P ++       E  +++L+ +   +D  + + + G+ G+GKTTL +++FH   V+
Sbjct: 153 IRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVR 212

Query: 91  TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI---- 146
             F    WVC +S Q T + + +RIL+ L   DG         L   +Y LQ++L     
Sbjct: 213 RHFDGFAWVC-VSQQFTQKHVWQRILQELQPHDGDI-------LQMDEYALQRKLFQLLE 264

Query: 147 GKRYLIVLDDF---EDMEVCKHLSKVLPRGYGERLIITSRNE 185
             RYL+VLDD    ED +V K    V PR  G ++++TSRNE
Sbjct: 265 AGRYLVVLDDVWKKEDWDVIK---AVFPRKRGWKMLLTSRNE 303

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 4/156 (2%)

Query: 30  KVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV 89
           ++ ++ P ++       E  +++L+ +   +D ++ + + G+ G+GKTTL +++FH   V
Sbjct: 152 EIRQTYPDSSESDLVGVEQSVEELVGHLVENDIYQVVSIAGMGGIGKTTLARQVFHHDLV 211

Query: 90  KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKR 149
           +  F    WVC +S Q T + + +RIL+ L   DG     +      L   L Q L   R
Sbjct: 212 RRHFDGFAWVC-VSQQFTLKHVWQRILQELQPHDGNILQMDESA---LQPKLFQLLETGR 267

Query: 150 YLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNE 185
           YL+VLDD    E    +  V PR  G ++++TSRNE
Sbjct: 268 YLLVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNE 303

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 10/158 (6%)

Query: 31  VSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVK 90
           + ++ P ++       E  + +L+ +   +D  + + + G+ G+GKTTL +++FH   V+
Sbjct: 153 IRQTYPDSSESDLVGVEQSVTELVCHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVR 212

Query: 91  TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIG 147
             F    WVC +S Q T + + +RIL+ L   DG     + +  QG  F      Q L  
Sbjct: 213 RHFDGFAWVC-VSQQFTQKHVWQRILQELQPHDGEILQMDEYTIQGKLF------QLLET 265

Query: 148 KRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNE 185
            RYL+VLDD    E    +  V PR  G ++++TSRNE
Sbjct: 266 GRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNE 303

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 10/128 (7%)

Query: 61  DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG 120
           D  + + + G+ G+GKTTL ++IFH   V+  F    WVC +S Q T + + +RIL+ L 
Sbjct: 181 DNIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAWVC-VSQQFTQKHVWQRILQELR 239

Query: 121 VDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGER 177
             DG     + +  QG  F      Q L   RYL+VLDD    E    + +V PR  G +
Sbjct: 240 PHDGEILQMDEYTIQGKLF------QLLETGRYLVVLDDVWKEEDWDRIKEVFPRKRGWK 293

Query: 178 LIITSRNE 185
           +++TSRNE
Sbjct: 294 MLLTSRNE 301

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
224114113	399	NBS resistance protein [Populus trichoca	0.572	0.571	0.410	1e-39
297800146	380	hypothetical protein ARALYDRAFT_492949 [	0.525	0.55	0.393	6e-35
15234114	383	putative disease resistance protein [Ara	0.527	0.548	0.370	6e-33
28393128	383	unknown protein [Arabidopsis thaliana]	0.527	0.548	0.370	7e-33
297791189	328	hypothetical protein ARALYDRAFT_494438 [	0.610	0.740	0.322	9e-28
297794711	354	hypothetical protein ARALYDRAFT_916916 [	0.545	0.612	0.304	4e-26
15242416	354	putative disease resistance protein [Ara	0.515	0.579	0.328	5e-26
15242409	346	putative disease resistance protein [Ara	0.660	0.760	0.295	3e-25
449469422	293	PREDICTED: probable disease resistance p	0.459	0.624	0.410	4e-23
166084749	202	NBS-LRR disease resistance protein [Musa	0.369	0.727	0.380	3e-22

>gi|224114113|ref|XP_002316671.1| NBS resistance protein [Populus trichocarpa] gi|222859736|gb|EEE97283.1| NBS resistance protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/251 (41%), Positives = 149/251 (59%), Gaps = 23/251 (9%)

Query: 4   VSQNGEIGGSSSDGGDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQF 63
           +S NG       D G+ S   +T   +  +S  P  VHGF +E   L KLL    + ++F
Sbjct: 100 ISSNGNFSPQRDDQGNSSNVRDTG-RQSHQSVSPLVVHGFDDEITSLVKLLVYERSKEKF 158

Query: 64  RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS----GQKTAE-SIVKRILKR 118
            A+G+ G+AG GKTTLCQ I  + +VK  FVPRI V +MS    G K A+ ++V+RIL  
Sbjct: 159 SAVGITGMAGAGKTTLCQEIIKREEVKKHFVPRILV-SMSKKPDGNKDAKIALVERILLS 217

Query: 119 LGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDD-------FEDMEVC-------- 163
           LGV++ T  S    GL+ L   L  QL+GK+Y+IVLDD       FE++           
Sbjct: 218 LGVEENTIQSVSNSGLSALICALHVQLMGKKYMIVLDDAQEGDTWFENLYSPLPGKVKWE 277

Query: 164 KHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQ 223
           + L+  LP+GYG  +I+TSRN+ L  +MVGEEN+H + PL+D+E CWLI++D+V ++D  
Sbjct: 278 QSLAYGLPKGYGGTVIVTSRNKDLAKKMVGEENVHPVLPLADKEKCWLIFKDAV-EQDGT 336

Query: 224 LKSQARKDLEE 234
           L +    +LE+
Sbjct: 337 LFNPPNVELED 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800146|ref|XP_002867957.1| hypothetical protein ARALYDRAFT_492949 [Arabidopsis lyrata subsp. lyrata] gi|297313793|gb|EFH44216.1| hypothetical protein ARALYDRAFT_492949 [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/262 (39%), Positives = 143/262 (54%), Gaps = 53/262 (20%)

Query: 8   GEIGGSSSDGGDKSKPEETNVPKVS--KSKPPAN------------VHGFANEELHLQKL 53
           G+  GSSS  G++S   +++  + S  K +P AN            +HGF NE+L L+  
Sbjct: 42  GKQSGSSSKHGNQSTDGDSSPTRNSSKKGRPKANRVETSSELPDHPIHGFINEKLFLKNF 101

Query: 54  LSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE---S 110
              +   ++F+   +VG  GVGKTTLCQ +F+  DVK  + PRIWV +M  ++T +    
Sbjct: 102 FLKQKESEEFKTRAIVGKYGVGKTTLCQDVFNDEDVKQVYFPRIWV-SMYSKETKDPKID 160

Query: 111 IVKRILKRLGVDD----------------------GTTNSFEGQGLAFLDYVLQQQLIGK 148
           +VKRIL+ LGV+D                      G   + + + LA L Y L   LIGK
Sbjct: 161 VVKRILRLLGVEDEMFEHIKTEAEEEKRIKDEAGEGGEETVKQKELARLLYALHLHLIGK 220

Query: 149 RYLIVLDD-FEDMEVCK-----------HLSKVLPRGYGERLIITSRNEKLTTEMVG-EE 195
           +YLIVLDD +ED E  +           HLS   P+G+G R+IITSR+E+L  E+VG EE
Sbjct: 221 KYLIVLDDVWEDNEWDQRLDDEKQQEKSHLSCGFPKGFGGRVIITSRDERLAKEIVGEEE 280

Query: 196 NLHQLQPLSDQESCWLIYRDSV 217
           NL +L P SD ES W IY D+V
Sbjct: 281 NLQRLFPRSDAESLWKIYIDAV 302

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234114|ref|NP_193641.1| putative disease resistance protein [Arabidopsis thaliana] gi|46395783|sp|Q84WD3.2|DRL26_ARATH RecName: Full=Probable disease resistance protein At4g19060 gi|2832635|emb|CAA16764.1| hypothetical protein [Arabidopsis thaliana] gi|7268701|emb|CAB78908.1| hypothetical protein [Arabidopsis thaliana] gi|63003754|gb|AAY25406.1| At4g19060 [Arabidopsis thaliana] gi|332658735|gb|AEE84135.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 139/270 (51%), Gaps = 60/270 (22%)

Query: 7   NGEIGGSSSDGGDKS-----KPEETNVPKVSKSKPPAN------------VHGFANEELH 49
           +G+  GSSS  G++S      P   +     K +P AN            + GF NE+L 
Sbjct: 41  SGKQRGSSSKHGNQSTHGDSSPTRNSSGSSKKGRPKANRVETSSELPDHLIRGFINEKLF 100

Query: 50  LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE 109
           L+  L  +   ++F+ + +VG  GVGKTTLCQ +F+  DVK  + PRIWV +M  ++T E
Sbjct: 101 LKNFLLKQKESEEFKTLAIVGKYGVGKTTLCQAVFNDEDVKQVYFPRIWV-SMYSKETKE 159

Query: 110 ------SIVKRILKRLGVDDGTTNSFEGQG----------------------LAFLDYVL 141
                  +VKRIL+ LGV+D      + +                       LA L Y L
Sbjct: 160 DEDPKIDVVKRILRSLGVEDEMFKHIKTEAEEEKSIKDEAGEREEETVKEKELARLLYAL 219

Query: 142 QQQLIGKRYLIVLDD-FEDMEVCK------------HLSKVLPRGYGERLIITSRNEKLT 188
              LIGK+YLIVLDD +ED E  +            HLS   P+G+G ++I+TSR+E+L 
Sbjct: 220 HLNLIGKKYLIVLDDVWEDNEWDQRLDDEKKQQEKSHLSCGFPKGFGGKVIMTSRDERLA 279

Query: 189 TEMVG-EENLHQLQPLSDQESCWLIYRDSV 217
             +VG EENL +L P SD ES W IY D+V
Sbjct: 280 KAIVGEEENLQRLFPRSDAESLWEIYIDAV 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393128|gb|AAO41997.1| unknown protein [Arabidopsis thaliana]

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 139/270 (51%), Gaps = 60/270 (22%)

Query: 7   NGEIGGSSSDGGDKS-----KPEETNVPKVSKSKPPAN------------VHGFANEELH 49
           +G+  GSSS  G++S      P   +     K +P AN            + GF NE+L 
Sbjct: 41  SGKQRGSSSKHGNQSTHGDSSPTRNSSGSSKKGRPKANRVETSSELPDHLIRGFINEKLF 100

Query: 50  LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE 109
           L+  L  +   ++F+ + +VG  GVGKTTLCQ +F+  DVK  + PRIWV +M  ++T E
Sbjct: 101 LKNFLLKQKESEEFKTLAIVGKYGVGKTTLCQAVFNDEDVKQVYFPRIWV-SMYSKETKE 159

Query: 110 ------SIVKRILKRLGVDDGTTNSFEGQG----------------------LAFLDYVL 141
                  +VKRIL+ LGV+D      + +                       LA L Y L
Sbjct: 160 DEDPKIDVVKRILRSLGVEDEMFKHIKTEAEEEKSIKDEAGEREEETVKEKELARLLYAL 219

Query: 142 QQQLIGKRYLIVLDD-FEDMEVCK------------HLSKVLPRGYGERLIITSRNEKLT 188
              LIGK+YLIVLDD +ED E  +            HLS   P+G+G ++I+TSR+E+L 
Sbjct: 220 HLNLIGKKYLIVLDDVWEDNEWDQRLDDEKKQQEKSHLSCGFPKGFGGKVIMTSRDERLA 279

Query: 189 TEMVG-EENLHQLQPLSDQESCWLIYRDSV 217
             +VG EENL +L P SD ES W IY D+V
Sbjct: 280 KAIVGEEENLQRLFPRSDAESLWEIYIDAV 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791189|ref|XP_002863479.1| hypothetical protein ARALYDRAFT_494438 [Arabidopsis lyrata subsp. lyrata] gi|297309314|gb|EFH39738.1| hypothetical protein ARALYDRAFT_494438 [Arabidopsis lyrata subsp. lyrata]

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 36/279 (12%)

Query: 18  GDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKT 77
           G+++K EE  V + +   P   ++GF NE   LQ  L ++    +F+++ +VG  GVGKT
Sbjct: 34  GEETKQEEDRV-ETNSELPAYEIYGFENEIKSLQHFLLDQKVYKEFKSLVIVGEHGVGKT 92

Query: 78  TLCQRIFHKPDVKTQFVPRIWVCTMS-----GQKTAESIVKRILKRLGVDDGTTNSF--- 129
            LCQ+IF+  DVK+ + P IWV  +S     G      ++K+ILK LGV+D    S    
Sbjct: 93  ALCQKIFNDYDVKSVYAPWIWVSMLSNESKEGLDGKICVLKKILKALGVEDSMFESIRRE 152

Query: 130 ------EGQGLAFLDYVLQQQLIGKRYLIVLDDF-------------EDMEVCKHLSKVL 170
                 + + L+ L Y L   L  K+Y+IV DD              E+ +  K+LS   
Sbjct: 153 VVEETAKEKELSALLYALHLNLRWKKYMIVFDDVREEDNWNEVLQDGEEKQWGKYLSDGF 212

Query: 171 PRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYRDSVRDKDAQLKSQAR 229
           P G G R+I T+R+E L  ++V E++ +H L PLSD  S W IY   +  ++ +     +
Sbjct: 213 PTGSGGRVIYTTRDENLAKKLVAEKHEIHCLWPLSDSYSVWKIYEAMILKREKEPPRNDK 272

Query: 230 KDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTK 268
           K ++E + K +G        P + +L+ +L  +  EN K
Sbjct: 273 KCIDELMNKSRG-------LPLAARLLAKLDPVLLENEK 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794711|ref|XP_002865240.1| hypothetical protein ARALYDRAFT_916916 [Arabidopsis lyrata subsp. lyrata] gi|297311075|gb|EFH41499.1| hypothetical protein ARALYDRAFT_916916 [Arabidopsis lyrata subsp. lyrata]

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 56/273 (20%)

Query: 36  PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP 95
           P  ++HGF NE   LQ  L ++    +F+++ +VG  GVGKT LCQ+IF+   VK+ + P
Sbjct: 57  PDHDIHGFDNEIKSLQHFLLDQKVKREFKSLVIVGEYGVGKTALCQKIFNDEAVKSVYAP 116

Query: 96  RIWVCTMSGQKTAE-----SIVKRILKRLGVDDGTTNSFEGQG----------------- 133
           R+WV   S + T E      ++K+IL  LGV D    +                      
Sbjct: 117 RVWVSMASNESTEELNGKICVLKKILTGLGVKDSILETISADAKQEFKDNAEVASNQEAG 176

Query: 134 -----------LAFLDYVLQQQLIGKRYLIVLDDF---------------EDMEVCKHLS 167
                      L+ L Y L   L  K+YLIV DD                +D +  K LS
Sbjct: 177 EIDRETEKEKELSALLYALHLNLRWKKYLIVFDDVREIDNWDEKLDVKLNDDEKWGKFLS 236

Query: 168 KVLPRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYRDSVRDKDAQLKS 226
              P+G G R+I T+R+E L  ++V  ++ +H+L PLSD +S W IY   V+ ++ +   
Sbjct: 237 DGFPKGSGGRVIYTTRDENLAKKLVSRKHEIHRLWPLSDHQSVWKIYDAVVQKREKESPR 296

Query: 227 QARKDLEEKLEKLQGQNEDAVNFPSSKQLVEEL 259
             +K ++E + K +G        P + +L+ EL
Sbjct: 297 NDKKCIDELMNKSRG-------LPLAARLLAEL 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242416|ref|NP_199362.1| putative disease resistance protein [Arabidopsis thaliana] gi|145334745|ref|NP_001078718.1| putative disease resistance protein [Arabidopsis thaliana] gi|46395979|sp|Q9FHI7.1|DRL35_ARATH RecName: Full=Probable disease resistance protein At5g45490 gi|9758739|dbj|BAB09177.1| unnamed protein product [Arabidopsis thaliana] gi|18086408|gb|AAL57661.1| AT5g45490/MFC19_16 [Arabidopsis thaliana] gi|19699244|gb|AAL90988.1| AT5g45490/MFC19_16 [Arabidopsis thaliana] gi|332007875|gb|AED95258.1| putative disease resistance protein [Arabidopsis thaliana] gi|332007876|gb|AED95259.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 51/256 (19%)

Query: 36  PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP 95
           P  ++HGF NE   LQ  L ++    +F+++ +VG  GVGKT LCQ+IF+   VK+ + P
Sbjct: 57  PGHDIHGFDNEIKSLQHFLLDQKVRREFKSLVIVGEYGVGKTALCQKIFNDEAVKSVYAP 116

Query: 96  RIWVCTMSGQKTAE------SIVKRILKRLGV-----------------DDGTTNSFEGQ 132
           R+WV +M  +++ E       ++K+ILK LGV                 D+    S +  
Sbjct: 117 RVWV-SMENKESKEGLDGKICVLKKILKGLGVEELILETISTDAKQEFKDNEEVASNQEA 175

Query: 133 G-----------LAFLDYVLQQQLIGKRYLIVLDDF---------------EDMEVCKHL 166
           G           L+ L Y L   L  K+YLIV DD                ED +  K+L
Sbjct: 176 GEIDRETEKEKELSALLYALHLNLRWKKYLIVFDDVRENDNWDEKLDAKLKEDEKWGKYL 235

Query: 167 SKVLPRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYRDSVRDKDAQLK 225
           S   P+G G R+I T+R+E L   +V +++ +H+L PLSD +S W IY   V+DK  +  
Sbjct: 236 SDGFPKGSGGRVIYTTRDENLAKNLVAQKHEIHRLWPLSDHQSVWKIYDAVVKDKQKESP 295

Query: 226 SQARKDLEEKLEKLQG 241
              +K ++E + K +G
Sbjct: 296 RNDKKCIDELMNKSRG 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242409|ref|NP_199357.1| putative disease resistance protein [Arabidopsis thaliana] gi|46395980|sp|Q9FHJ2.1|DRL34_ARATH RecName: Full=Probable disease resistance protein At5g45440 gi|9758734|dbj|BAB09172.1| unnamed protein product [Arabidopsis thaliana] gi|30102528|gb|AAP21182.1| At5g45440 [Arabidopsis thaliana] gi|110743362|dbj|BAE99568.1| hypothetical protein [Arabidopsis thaliana] gi|332007869|gb|AED95252.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 154/315 (48%), Gaps = 52/315 (16%)

Query: 18  GDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKT 77
           GD++K  E  V +     P  +++GF NE   LQ  L ++ +   F+++ VVG  GVGKT
Sbjct: 34  GDETKQVEDRV-ETDSGLPGHDIYGFENEIKSLQHFLLDQKSYKLFKSLVVVGEYGVGKT 92

Query: 78  TLCQRIFHKPDVKTQFVPRIWVCTMS-----GQKTAESIVKRILKRLGVDDGTTNS---- 128
            LCQ+IF+  DV+  + PRIWV   S     G      ++K ILK LGV++    S    
Sbjct: 93  ALCQQIFNDYDVRNAYAPRIWVSMHSNESKEGLDGKICVLKTILKGLGVEESMFESIHRE 152

Query: 129 -------------FEGQG-----LAFLDYVLQQQLIGKRYLIVLDDFEDMEVC------- 163
                         +G+      ++ L Y L   L  K+YLIV DD ++++         
Sbjct: 153 VVEEVSNRQEAGEIDGETAKEKEISALLYALHLNLRWKKYLIVFDDVQEIDNWDEKLDAK 212

Query: 164 --------KHLSKVLPRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYR 214
                   K+LS   P+G G R+I T+R+E L   +V +++ +H+L PLSD  S W IY 
Sbjct: 213 LNEGEKWGKYLSDGFPKGSGGRVIYTTRDENLAKNLVVQKHEIHRLWPLSDSNSVWKIYE 272

Query: 215 DSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMER-K 273
             ++ ++ +     +K ++E + K +G        P + +L+ EL  +  ++ K  +   
Sbjct: 273 AMIQKREKESPRNDKKCIDELMNKSRG-------LPLAARLLAELDPMLFDDGKANQNGS 325

Query: 274 RSILRDSANLPNSKQ 288
           +    DS + PNS++
Sbjct: 326 KDGKTDSVDNPNSEE 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469422|ref|XP_004152419.1| PREDICTED: probable disease resistance protein At4g19060-like [Cucumis sativus] gi|449533834|ref|XP_004173876.1| PREDICTED: probable disease resistance protein At4g19060-like [Cucumis sativus]

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 119/212 (56%), Gaps = 29/212 (13%)

Query: 31  VSKSKPPANVHGFANEELHLQKLLSN---RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP 87
           V+++   + VHG  NE L LQK+L      G  + FRAIG++GV G+GK+T+ +     P
Sbjct: 26  VTQTVDGSTVHGVENELLVLQKMLDIPPISGGGNGFRAIGIIGVRGIGKSTISRAFLQNP 85

Query: 88  DVKTQFVPRIWVCTMSGQKTAE-----SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142
           +VK++F+PRIW+ +MS   T +     +++KRIL  LGVD   T    G+ L  L Y L+
Sbjct: 86  EVKSKFLPRIWI-SMSENFTEDADPKIALLKRILISLGVD---TKFPGGETLGSLLYALR 141

Query: 143 QQLIGKRYLIVLDD-------------FEDMEVC----KHLSKVLPRGYGERLIITSRNE 185
            QL GKRYLIVLDD             + D+  C    + L    P+G G  +I+TSR+E
Sbjct: 142 LQLRGKRYLIVLDDVQEFKTEEEQNDWYWDLNSCEKNGEKLRDGFPKGNGGAVILTSRSE 201

Query: 186 KLTTEMVGEENLHQLQPLSDQESCWLIYRDSV 217
           K    MVGE NL  L P  D ES W I+R  V
Sbjct: 202 KAAKAMVGEGNLRCLVPHKDPESFWEIFRQEV 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166084749|emb|CAP66371.1| NBS-LRR disease resistance protein [Musa textilis]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 97/176 (55%), Gaps = 29/176 (16%)

Query: 70  GVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-----GQKTAESIVKRILKRLGVDDG 124
           G+ GVGKT L Q +F+ P V+ +F PR+WVC MS     G+     +++R+L  LGV+D 
Sbjct: 1   GMGGVGKTVLAQMVFNSPQVRRRFFPRLWVC-MSQTVKRGRDVRREMLERMLMALGVEDE 59

Query: 125 TTNSFE-----GQGLAFLDYVLQQQLIGKRYLIVLDDFEDME----------------VC 163
              S         GLA L + L  QL+ KRYLIV DD  +++                  
Sbjct: 60  AITSISEAGAGSGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWYEGLMSSGLPDEGLWA 119

Query: 164 KHL--SKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSV 217
            HL   +VLP+  G  +I+TSR E++  +MVG+EN+ +++P  D E CW I+ DSV
Sbjct: 120 GHLRLDRVLPKDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGEFCWNIFMDSV 175

Source: Musa textilis

Species: Musa textilis

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2117164	383	AT4G19060 [Arabidopsis thalian	0.218	0.227	0.485	6.4e-26
TAIR|locus:2163568	354	AT5G45490 "AT5G45490" [Arabido	0.271	0.305	0.354	1.4e-20
TAIR|locus:2163498	346	AT5G45440 [Arabidopsis thalian	0.424	0.488	0.284	3.4e-19
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.414	0.193	0.310	6.7e-13
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.464	0.218	0.282	5.4e-11
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.381	0.167	0.288	1.4e-10
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.505	0.176	0.267	1.6e-10
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.530	0.249	0.259	1.7e-10
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.374	0.164	0.301	6.1e-10
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.374	0.165	0.295	1.7e-09

TAIR|locus:2117164 AT4G19060 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 6.4e-26, Sum P(3) = 6.4e-26
 Identities = 49/101 (48%), Positives = 62/101 (61%)

Query:   134 LAFLDYVLQQQLIGKRYLIVLDD-FEDMEVCK------------HLSKVLPRGYGERLII 180
             LA L Y L   LIGK+YLIVLDD +ED E  +            HLS   P+G+G ++I+
Sbjct:   212 LARLLYALHLNLIGKKYLIVLDDVWEDNEWDQRLDDEKKQQEKSHLSCGFPKGFGGKVIM 271

Query:   181 TSRNEKLTTEMVGEE-NLHQLQPLSDQESCWLIYRDSVRDK 220
             TSR+E+L   +VGEE NL +L P SD ES W IY D+V  K
Sbjct:   272 TSRDERLAKAIVGEEENLQRLFPRSDAESLWEIYIDAVPTK 312

GO:0005634 "nucleus" evidence=ISM

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163568 AT5G45490 "AT5G45490" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 44/124 (35%), Positives = 66/124 (53%)

Query:   134 LAFLDYVLQQQLIGKRYLIVLDDF---------------EDMEVCKHLSKVLPRGYGERL 178
             L+ L Y L   L  K+YLIV DD                ED +  K+LS   P+G G R+
Sbjct:   188 LSALLYALHLNLRWKKYLIVFDDVRENDNWDEKLDAKLKEDEKWGKYLSDGFPKGSGGRV 247

Query:   179 IITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLE 237
             I T+R+E L   +V +++ +H+L PLSD +S W IY   V+DK  +     +K ++E + 
Sbjct:   248 IYTTRDENLAKNLVAQKHEIHRLWPLSDHQSVWKIYDAVVKDKQKESPRNDKKCIDELMN 307

Query:   238 KLQG 241
             K +G
Sbjct:   308 KSRG 311

GO:0005575 "cellular_component" evidence=ND

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163498 AT5G45440 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
 Identities = 56/197 (28%), Positives = 97/197 (49%)

Query:   111 IVKRILKR--LGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVC----- 163
             +V+ +  R   G  DG T   E +  A L Y L   L  K+YLIV DD ++++       
Sbjct:   153 VVEEVSNRQEAGEIDGETAK-EKEISALL-YALHLNLRWKKYLIVFDDVQEIDNWDEKLD 210

Query:   164 ----------KHLSKVLPRGYGERLIITSRNEKLTTEMVGEEN-LHQLQPLSDQESCWLI 212
                       K+LS   P+G G R+I T+R+E L   +V +++ +H+L PLSD  S W I
Sbjct:   211 AKLNEGEKWGKYLSDGFPKGSGGRVIYTTRDENLAKNLVVQKHEIHRLWPLSDSNSVWKI 270

Query:   213 YRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMER 272
             Y   ++ ++ +     +K ++E + K +G        P + +L+ EL  +  ++ K  + 
Sbjct:   271 YEAMIQKREKESPRNDKKCIDELMNKSRG-------LPLAARLLAELDPMLFDDGKANQN 323

Query:   273 -KRSILRDSANLPNSKQ 288
               +    DS + PNS++
Sbjct:   324 GSKDGKTDSVDNPNSEE 340

GO:0005634 "nucleus" evidence=ISM

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 55/177 (31%), Positives = 93/177 (52%)

Query:    40 VHGFANEELHLQKLLSNRGTDDQFRAIXXXXXXXXXKTTLCQRIFHKPDVKTQFVPRIWV 99
             V G   ++  +++ L  R  D Q   +         KTT+ Q +F+  +++ +F  RIWV
Sbjct:   160 VVGLEGDKRKIKEWLF-RSNDSQLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWV 218

Query:   100 CTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED 159
              ++S   T E I++ IL+ LG  D +     G  +  L   +QQ L+GKRYLIV+DD  D
Sbjct:   219 -SVSQTFTEEQIMRSILRNLG--DASV----GDDIGTLLRKIQQYLLGKRYLIVMDDVWD 271

Query:   160 MEVC--KHLSKVLPRGYGERLIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIY 213
               +     + + LPRG G  +I+T+R+E +   +   ++  H+ + LS   S WL++
Sbjct:   272 KNLSWWDKIYQGLPRGQGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNS-WLLF 327

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
 Identities = 55/195 (28%), Positives = 93/195 (47%)

Query:    50 LQKLLSNRGTDDQFRAIXXXXXXXXXKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE 109
             L KLL + G D++   I         KT+L +++F+  DVK  F  R+W   +SG+    
Sbjct:   172 LTKLLDDDG-DNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWT-NVSGECNTR 229

Query:   110 SIVKRILKRLG-VDDGTTNSFEGQGL-AFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLS 167
              I+ RI+  L    +G       Q L  +L  +LQ+    KRYL+V+DD  + E  + L 
Sbjct:   230 DILMRIISSLEETSEGELEKMAQQELEVYLHDILQE----KRYLVVVDDIWESEALESLK 285

Query:   168 KVLPRGY-GERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS 226
             + LP  Y G R+IIT+    +          H ++ L+ +ES W ++         ++  
Sbjct:   286 RALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKES-WNLFEKKAFRYILKVDQ 344

Query:   227 QARKDLEEKLEKLQG 241
             + +K  +E ++K  G
Sbjct:   345 ELQKIGKEMVQKCGG 359

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 45/156 (28%), Positives = 76/156 (48%)

Query:    30 KVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIXXXXXXXXXKTTLCQRIFHKPDV 89
             ++ ++ P ++       E  +++L+ +   +D ++ +         KTTL +++FH   V
Sbjct:   152 EIRQTYPDSSESDLVGVEQSVEELVGHLVENDIYQVVSIAGMGGIGKTTLARQVFHHDLV 211

Query:    90 KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKR 149
             +  F    WVC +S Q T + + +RIL+ L   DG     +   L      L Q L   R
Sbjct:   212 RRHFDGFAWVC-VSQQFTLKHVWQRILQELQPHDGNILQMDESAL---QPKLFQLLETGR 267

Query:   150 YLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNE 185
             YL+VLDD    E    +  V PR  G ++++TSRNE
Sbjct:   268 YLLVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNE 303

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 58/217 (26%), Positives = 103/217 (47%)

Query:    30 KVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIXXXXXXXXXKTTLCQRIFHKPDV 89
             ++ ++ P  N  GF   E +++KL+     +D ++ +         KTTL +++F+   V
Sbjct:   149 EIRRTFPKDNESGFVALEENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMV 208

Query:    90 KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG-- 147
               +F    WV ++S   T +++ + IL  L   +  T   E + L   +Y LQ++L    
Sbjct:   209 TKKFDKLAWV-SVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLL 267

Query:   148 --KRYLIVLDDF---EDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQP 202
                + LIVLDD    ED EV K    + P   G +L++TSRNE +      +    + + 
Sbjct:   268 EMSKSLIVLDDIWKKEDWEVIK---PIFPPTKGWKLLLTSRNESIVAPTNTKYFNFKPEC 324

Query:   203 LSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKL 239
             L   +S  L  R +    DA     +  +++E++EKL
Sbjct:   325 LKTDDSWKLFQRIAFPINDA-----SEFEIDEEMEKL 356

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 59/227 (25%), Positives = 106/227 (46%)

Query:    26 TNVP-KVSKSKPPAN----VHGFANE-ELHLQKLLSNRGTDDQFRAIXXXXXXXXXKTTL 79
             TNV  +  +  PP +    V G  ++ ++ L KLLS+   D  +  I         KT L
Sbjct:   143 TNVRVRQLRRAPPVDQEELVVGLEDDVKILLVKLLSDNEKDKSY-IISIFGMGGLGKTAL 201

Query:    80 CQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT----NSFEGQGLA 135
              +++++  DVK +F  R W       KT + ++ RI++ LG+           FE     
Sbjct:   202 ARKLYNSGDVKRRFDCRAWTYVSQEYKTRDILI-RIIRSLGIVSAEEMEKIKMFEED--E 258

Query:   136 FLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGY-GERLIITSRNEKLTTEMVGE 194
              L+  L   L GK Y++V+DD  D +  + L + LP  + G ++IIT+R   +   + G 
Sbjct:   259 ELEVYLYGLLEGKNYMVVVDDVWDPDAWESLKRALPCDHRGSKVIITTRIRAIAEGVEGT 318

Query:   195 ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQG 241
                H+L+ L+ +ES W ++         ++    ++  +E ++K  G
Sbjct:   319 VYAHKLRFLTFEES-WTLFERKAFSNIEKVDEDLQRTGKEMVKKCGG 364

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
 Identities = 48/159 (30%), Positives = 78/159 (49%)

Query:    30 KVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIXXXXXXXXXKTTLCQRIFHKPDV 89
             ++ ++ P ++       E  +++L+ +   +D  + +         KTTL +++FH   V
Sbjct:   152 EIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLV 211

Query:    90 KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKR 149
             +  F    WVC +S Q T + + +RIL+ L   DG     +   L      L Q L   R
Sbjct:   212 RRHFDGFAWVC-VSQQFTQKHVWQRILQELQPHDGDILQMDEYAL---QRKLFQLLEAGR 267

Query:   150 YLIVLDDF---EDMEVCKHLSKVLPRGYGERLIITSRNE 185
             YL+VLDD    ED +V K    V PR  G ++++TSRNE
Sbjct:   268 YLVVLDDVWKKEDWDVIK---AVFPRKRGWKMLLTSRNE 303

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 47/159 (29%), Positives = 76/159 (47%)

Query:    30 KVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIXXXXXXXXXKTTLCQRIFHKPDV 89
             ++ ++ P ++       E  +++L+      D  + +         KTTL ++IFH   V
Sbjct:   150 EIRQTFPNSSESDLVGVEQSVEELVGPMVEIDNIQVVSISGMGGIGKTTLARQIFHHDLV 209

Query:    90 KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT---NSFEGQGLAFLDYVLQQQLI 146
             +  F    WVC +S Q T + + +RIL+ L   DG     + +  QG  F      Q L 
Sbjct:   210 RRHFDGFAWVC-VSQQFTQKHVWQRILQELRPHDGEILQMDEYTIQGKLF------QLLE 262

Query:   147 GKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNE 185
               RYL+VLDD    E    + +V PR  G ++++TSRNE
Sbjct:   263 TGRYLVVLDDVWKEEDWDRIKEVFPRKRGWKMLLTSRNE 301

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XI000350 NBS resistance protein (399 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	9e-25
pfam13401	124	pfam13401, AAA_22, AAA domain	1e-04
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	6e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam07083	220	pfam07083, DUF1351, Protein of unknown function (D	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  102 bits (255), Expect = 9e-25
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 9/193 (4%)

Query: 50  LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE 109
           ++KLL      D    +G+VG+ GVGKTTL ++I++   V   F    WV  +S   T  
Sbjct: 9   IEKLLE---MSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV-VSKTYTEF 64

Query: 110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKV 169
            + K IL+ LG+DD          LA     +++ L+ KR+L+VLDD  +      +   
Sbjct: 65  RLQKDILQELGLDDSDWVEKNESELAVK---IKEALLRKRFLLVLDDVWEKNDWDKIGVP 121

Query: 170 LPRG-YGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQA 228
            P G  G R+I+T+R+E +   M G    H+++ L  +ES W ++ + V +K+     + 
Sbjct: 122 FPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEES-WELFSNKVFEKELPPCPEL 180

Query: 229 RKDLEEKLEKLQG 241
            +  +E +EK +G
Sbjct: 181 EEVAKEIVEKCKG 193

Length = 285

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 14/95 (14%)

Query: 68  VVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV-CTMSGQKTAESIVKRILKRLGVDDGTT 126
           + G +G GKTTL +R+        Q   R  V        T + ++++IL+ LG+     
Sbjct: 9   LTGESGSGKTTLLRRLAR------QLPNRRVVYVEAPSLGTPKDLLRKILRALGLP---- 58

Query: 127 NSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFEDM 160
               G   A L   +   L    R L+++D+ + +
Sbjct: 59  --LSGGTTAELLEAILDALKRRGRPLLIIDEAQHL 91

Length = 124

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 50  LQKLLS--NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV-CTMSGQK 106
           L++LL    R       ++ + G +G GKT+L + +     V      +       +  +
Sbjct: 9   LERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQ 68

Query: 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG---------KRYLIVLDDF 157
               +++++L+ L  +           L        Q L+          +  ++VLDD 
Sbjct: 69  ALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERLLARARPLVLVLDDL 128

Query: 158 EDM 160
           +  
Sbjct: 129 QWA 131

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 28/109 (25%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 216 SVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRS 275
           S R++  +L+ +   +L+E+L +LQ Q  +      +++L +EL  L+ E  +L +    
Sbjct: 63  SARERLPELQQEL-AELQEELAELQEQLAELQQ--ENQELKQELSTLEAELERLQKELAR 119

Query: 276 ILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRK 324
           I + SAN     +L+EE  +L+ ++ ++ +E  A + E  +  E  +R+
Sbjct: 120 IKQLSANA---IELDEENRELREELAELKQENEALEAENERLQENEQRR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 34/140 (24%)

Query: 227 QARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNS 286
           + + DLEE  E+L+ QNE          +VEE  + Q EN     R              
Sbjct: 352 RYQADLEELEERLEEQNE----------VVEEADEQQEENE---ARAE------------ 386

Query: 287 KQLEEEVEKLQGQITKM-----IEEKRAKQREQRKNA-EELKRKCGGLPLAAKLLGEIKA 340
              EEEV++L+ Q+        +++ RA Q +Q   A E  K+ CG   L A    +   
Sbjct: 387 -AAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDW-- 443

Query: 341 QEELRRKEKLLKDILDEIER 360
            EE + KE+   + L  +E+
Sbjct: 444 LEEFQAKEQEATEELLSLEQ 463

Length = 1486

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 34/166 (20%)

Query: 219 DKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILR 278
           DK+        KD  EKLEKL+                 E+ +L+ E  +L E  + +  
Sbjct: 377 DKEFAETRDELKDYREKLEKLK----------------REINELKRELDRLQEELQRLSE 420

Query: 279 DSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEI 338
           + A+L         +  ++ +I ++ EEK  K  E +K   +L++        A  L + 
Sbjct: 421 ELADL------NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-------LAADLSKY 467

Query: 339 KAQ-----EELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQT 379
           + +     EE  R EK L  +  E+    A  R  E   +   A  
Sbjct: 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|219289 pfam07083, DUF1351, Protein of unknown function (DUF1351)

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 18/168 (10%)

Query: 230 KDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLP----- 284
           K ++E + K +G      N+   K+   EL KL     K +  KR  ++   + P     
Sbjct: 22  KAIDEVVAKYKGYVVTEENYKDDKKERAELNKLI----KALNDKRKEIKKQYSKPADEFE 77

Query: 285 -NSKQLEEEVEKLQGQITKMIEEKRAKQREQR--KNAEELKRKCGGLPLAAKLLGEIKA- 340
              K+L   ++ +   I   I+E   KQ+E R     E L  K     L  +   E    
Sbjct: 78  AYMKKLIAPIKAVIDLIDSGIKEFEEKQKELRRDTVKEYLSEKAEEYGLDKRDFEEKYDD 137

Query: 341 ---QEELRRKEKLLKDILDEIERVV--AANRRPEPETQEQDAQTPATE 383
              + +   K   LK I + I+ ++   A +  E +  +Q     A E
Sbjct: 138 YVKKSKWLNKSVSLKKIEESIDTLILSEAQKLEERKAAKQAISEKAQE 185

This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown. Length = 220

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 10/173 (5%)

Query: 218  RDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSIL 277
            + ++ +  +  + +  +K E+ + +    +     K   EE  K +    K  E K++  
Sbjct: 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630

Query: 278  RDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGE 337
                     K+  EE +K + ++ K  EE + K  E+ K AEE K+K             
Sbjct: 1631 EKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAKKAEEDKKKAEEAK-------- 1681

Query: 338  IKAQEELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQTPATEGESNSVE 390
             KA+E+ ++  + LK   +E ++     ++   E ++ +    A E      E
Sbjct: 1682 -KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 8/203 (3%)

Query: 191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250
            +  E L  L+   ++    L   +S  D+ A+  ++  + LEE  E+L+    +     
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE---LE 361

Query: 251 SSKQLVEELGKLQGENTKLMERKRS---ILRDSANLPNSKQLEEEVEKLQGQITKMIEEK 307
             +  +EEL     E  + +E  RS    L        + ++E    +L+ ++    E  
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIAS-LNNEIERLEARLE-RLEDRRERL 419

Query: 308 RAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANRR 367
           + +  E  K  EE + K     L        + QEEL R E+ L+++ +E+E    A   
Sbjct: 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479

Query: 368 PEPETQEQDAQTPATEGESNSVE 390
            E E  +  A+  + E    ++E
Sbjct: 480 AERELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 219 DKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILR 278
            ++ +   +   +L+E++E+L+G+          ++L  EL +L+     L E K  I  
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRE--RLEELENELEELEER---LEELKEKIEA 334

Query: 279 DSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEI 338
               L   + L EE+E+L  ++ +  EE   K     +  EEL          A+L  E+
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE--ELAELEAEL 392

Query: 339 -KAQEELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQTPATEGE 385
            + + EL   ++ ++ + + +ER+       + E +E +A+    + E
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.33
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.31
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.3
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.28
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.19
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.18
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.17
PF05729	166	NACHT: NACHT domain	99.17
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.11
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.1
PRK04841	903	transcriptional regulator MalT; Provisional	99.09
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.08
PRK13342	413	recombination factor protein RarA; Reviewed	99.08
PRK06893	229	DNA replication initiation factor; Validated	99.07
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.05
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.04
COG0488	530	Uup ATPase components of ABC transporters with dup	99.04
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.99
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.98
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.97
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.97
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.94
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.92
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.9
PRK12402	337	replication factor C small subunit 2; Reviewed	98.89
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.88
COG4181	228	Predicted ABC-type transport system involved in ly	98.88
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.87
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.86
COG0488	530	Uup ATPase components of ABC transporters with dup	98.86
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.86
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.86
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.85
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.85
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.84
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.84
PLN03025	319	replication factor C subunit; Provisional	98.84
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.84
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.84
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.84
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.83
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.83
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.83
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.83
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.82
PRK04195	482	replication factor C large subunit; Provisional	98.82
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.82
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.81
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.81
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.81
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.8
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.8
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.8
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.8
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.8
PF13173	128	AAA_14: AAA domain	98.8
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.8
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.79
PRK08727	233	hypothetical protein; Validated	98.79
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.79
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.78
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.78
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.78
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.78
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.78
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.78
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.78
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.78
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.78
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.78
PRK08084	235	DNA replication initiation factor; Provisional	98.78
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.78
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.78
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.77
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.77
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.77
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.77
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.77
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.77
PRK13341	725	recombination factor protein RarA/unknown domain f	98.77
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.77
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.77
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.76
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.76
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.76
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.76
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.76
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.76
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.76
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.76
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.76
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.75
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.75
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.75
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.75
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.74
KOG0062	582	consensus ATPase component of ABC transporters wit	98.74
cd03246	173	ABCC_Protease_Secretion This family represents the	98.74
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.74
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.74
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.74
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.74
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.74
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.74
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.73
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.73
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.73
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.73
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.73
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.73
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.73
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.72
PRK10908	222	cell division protein FtsE; Provisional	98.72
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.72
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.72
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.72
PRK13409	590	putative ATPase RIL; Provisional	98.72
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.72
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.72
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.72
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.72
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.71
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.71
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.71
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.71
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.71
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.71
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.71
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.71
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.71
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.71
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.71
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.7
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.7
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.7
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.7
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.7
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.7
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.7
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.7
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.7
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.7
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.7
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.69
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.69
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.69
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.69
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.69
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.69
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.69
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.68
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.68
PRK11147	635	ABC transporter ATPase component; Reviewed	98.68
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.68
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.68
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.68
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.68
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.67
PRK10938	490	putative molybdenum transport ATP-binding protein	98.67
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.67
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.67
COG1123	539	ATPase components of various ABC-type transport sy	98.67
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.67
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.67
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.67
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.66
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.66
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.66
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.66
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.66
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.66
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.66
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.65
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.65
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.65
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.65
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.65
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.65
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.65
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.65
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.65
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.65
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.64
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.64
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.64
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.64
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.64
KOG2028	554	consensus ATPase related to the helicase subunit o	98.64
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.64
PRK09087	226	hypothetical protein; Validated	98.64
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.64
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.64
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.64
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.64
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.64
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.64
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.64
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.64
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.64
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.64
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.63
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.63
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.63
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.63
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.63
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.63
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.63
PTZ00202	550	tuzin; Provisional	98.63
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.63
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.63
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.63
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.63
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.62
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.62
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.62
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.61
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.61
PRK05642	234	DNA replication initiation factor; Validated	98.61
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.61
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.61
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.61
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.61
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.61
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.61
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.6
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.6
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.6
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.6
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.6
PRK13409	590	putative ATPase RIL; Provisional	98.6
PLN03073	718	ABC transporter F family; Provisional	98.6
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.6
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.6
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.6
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.59
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.59
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.59
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.59
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.59
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.59
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.58
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.58
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.58
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.58
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.58
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.58
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.57
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.57
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.57
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.57
COG1123	539	ATPase components of various ABC-type transport sy	98.57
COG3899	849	Predicted ATPase [General function prediction only	98.57
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.57
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.57
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.57
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.57
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.57
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.57
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.56
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.56
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.56
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK11147	635	ABC transporter ATPase component; Reviewed	98.56
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.55
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.55
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.55
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.54
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.54
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.54
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.54
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.54
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.54
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.54
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.54
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.54
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.54
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.53
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.53
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.52
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.52
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.51
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.51
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.51
COG3903	414	Predicted ATPase [General function prediction only	98.51
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.51
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.5
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.5
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.5
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.5
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.5
PRK06620	214	hypothetical protein; Validated	98.49
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.49
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.49
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.49
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.49
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.49
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.49
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.49
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.49
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.49
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.48
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.48
PLN03073	718	ABC transporter F family; Provisional	98.48
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.48
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.48
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.48
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.48
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.48
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.48
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.47
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.47
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.47
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.47
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.46
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.46
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.46
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.46
COG4172	534	ABC-type uncharacterized transport system, duplica	98.46
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.46
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.45
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.45
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.45
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.44
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.44
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.44
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.44
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.44
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.43
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.43
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.43
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.43
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.43
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.42
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.42
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.42
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.42
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.42
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.42
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.41
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.41
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.41
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.41
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.41
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.41
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.41
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.41
cd01128	249	rho_factor Transcription termination factor rho is	98.41
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.4
PRK10938	490	putative molybdenum transport ATP-binding protein	98.4
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.4
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.39
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.39
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.39
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.39
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.39
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.38
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.38
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.38
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.37
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.37
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.37
COG4988	559	CydD ABC-type transport system involved in cytochr	98.37
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.37
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.37
PRK12422	445	chromosomal replication initiation protein; Provis	98.37
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.36
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.36
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.36
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.36
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.36
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.35
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.35
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.35
CHL00181	287	cbbX CbbX; Provisional	98.34
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.34
PHA02544	316	44 clamp loader, small subunit; Provisional	98.33
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.33
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.32
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.31
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.31
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.31
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.3
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.3
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.3
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.29
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.29
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.28
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.28
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.28
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.28
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.28
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.28
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.27
PRK09376	416	rho transcription termination factor Rho; Provisio	98.27
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.27
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.27
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.26
CHL00176	638	ftsH cell division protein; Validated	98.26
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.26
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.26
PLN03211	659	ABC transporter G-25; Provisional	98.26
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.26
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.25
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.24
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.24
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.24
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.23
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.23
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.22
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.2
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.2
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.2
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.19
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.19
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.17
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.16
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.16
COG4172	534	ABC-type uncharacterized transport system, duplica	98.14
TIGR00767	415	rho transcription termination factor Rho. Members	98.13
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.13
PF00004	132	AAA: ATPase family associated with various cellula	98.11
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.11
smart00382	148	AAA ATPases associated with a variety of cellular	98.1
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.1
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.1
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.1
CHL00095	821	clpC Clp protease ATP binding subunit	98.1
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.1
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.09
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.08
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.08
PLN03232	1495	ABC transporter C family member; Provisional	98.08
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.08
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.07
PRK10865	857	protein disaggregation chaperone; Provisional	98.07
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.07
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.06
COG4559	259	ABC-type hemin transport system, ATPase component	98.05
PLN03130	1622	ABC transporter C family member; Provisional	98.05
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.04
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.04
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.04
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.03
COG4987	573	CydC ABC-type transport system involved in cytochr	98.03
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.03
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.03
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.02
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.02
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.02
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.02
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.02
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.01
PRK08116	268	hypothetical protein; Validated	98.01
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.0
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.0
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.99
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.99
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	97.99
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.99
PLN03232	1495	ABC transporter C family member; Provisional	97.99
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	97.99
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.99
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.99
PLN03130	1622	ABC transporter C family member; Provisional	97.98
PLN03140	1470	ABC transporter G family member; Provisional	97.98
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.98
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.97

>PLN03210 Resistant to P

Probab=100.00  E-value=1.5e-45  Score=401.48  Aligned_cols=339  Identities=16%  Similarity=0.189  Sum_probs=270.4

Q ss_pred             CcccccccCCCCCCCC-CCCCCCCCCCCCCCCCCC------CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCC
Q 015891            2 GQVSQNGEIGGSSSDG-GDKSKPEETNVPKVSKSK------PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGV   74 (398)
Q Consensus         2 ~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~Gi   74 (398)
                      .||++|||++||++.. ++|++++++|+..+...+      ..+++|||+++++++..+|..  ..+++++|+||||||+
T Consensus       141 ~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l--~~~~~~vvgI~G~gGi  218 (1153)
T PLN03210        141 QALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHL--ESEEVRMVGIWGSSGI  218 (1153)
T ss_pred             HHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcc--ccCceEEEEEEcCCCC
Confidence            4899999999999876 678888998887654333      346899999999999999976  6678999999999999


Q ss_pred             hHHHHHHHHHcCCCCCccccceEEEEec--CCcc-----------c-HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           75 GKTTLCQRIFHKPDVKTQFVPRIWVCTM--SGQK-----------T-AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        75 GKTtLa~~v~~~~~~~~~F~~~~~v~~v--~~~~-----------~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ||||||+++|+.  +..+|+..+|+...  +...           . ...++..++..+..... .   ....    ...
T Consensus       219 GKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~---~~~~----~~~  288 (1153)
T PLN03210        219 GKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-I---KIYH----LGA  288 (1153)
T ss_pred             chHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-c---ccCC----HHH
Confidence            999999999998  78899998887531  1110           0 12234444444322111 0   0011    235


Q ss_pred             HHHHHhCCCcEEEecCCCCHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHh-hhC
Q 015891          141 LQQQLIGKRYLIVLDDFEDMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRD-SVR  218 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~-~~~  218 (398)
                      +++.+.++++||||||||+..+++.+..... .++|++||||||+.+++..+ +..++|+++.|+. +++|.+|++ +|+
T Consensus       289 ~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~-~~~~~~~v~~l~~-~ea~~LF~~~Af~  366 (1153)
T PLN03210        289 MEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH-GIDHIYEVCLPSN-ELALEMFCRSAFK  366 (1153)
T ss_pred             HHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc-CCCeEEEecCCCH-HHHHHHHHHHhcC
Confidence            6778899999999999999999988876654 57899999999999999874 5678999999998 668888887 665


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHhHHHHHhhhccCCCCCCcchhhhhhHH
Q 015891          219 DKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQG  298 (398)
Q Consensus       219 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~  298 (398)
                      ...  .+....+.+++|+++|+|+|||++.          +|++|+.  +..++|+.+++++.+.++..+..    +|++
T Consensus       367 ~~~--~~~~~~~l~~~iv~~c~GLPLAl~v----------lgs~L~~--k~~~~W~~~l~~L~~~~~~~I~~----~L~~  428 (1153)
T PLN03210        367 KNS--PPDGFMELASEVALRAGNLPLGLNV----------LGSYLRG--RDKEDWMDMLPRLRNGLDGKIEK----TLRV  428 (1153)
T ss_pred             CCC--CcHHHHHHHHHHHHHhCCCcHHHHH----------HHHHHcC--CCHHHHHHHHHHHHhCccHHHHH----HHHH
Confidence            532  2356778899999999999999666          8888864  47799999999998765555555    9999


Q ss_pred             HHHHHHH--hh-------hcchHhhhHHHHHHHHHhCCchH-HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 015891          299 QITKMIE--EK-------RAKQREQRKNAEELKRKCGGLPL-AAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANRRP  368 (398)
Q Consensus       299 sy~~l~~--e~-------cf~~~~~~~~~~~il~~~g~~~~-~~~~l~~~~~~~~i~~~~~~mHdll~dm~~~i~~~e~~  368 (398)
                      ||+.|..  ++       |||.+++.+++..++..+++.+. |+..|.++ +++++..+.+.||||+|+|||+|+++|+.
T Consensus       429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~k-sLi~~~~~~~~MHdLl~~~~r~i~~~~~~  507 (1153)
T PLN03210        429 SYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDK-SLIHVREDIVEMHSLLQEMGKEIVRAQSN  507 (1153)
T ss_pred             hhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhc-CCEEEcCCeEEhhhHHHHHHHHHHHhhcC
Confidence            9999964  45       78888899999999999988877 99999999 99999878999999999999999999987


Q ss_pred             CCCch
Q 015891          369 EPETQ  373 (398)
Q Consensus       369 ~~~~~  373 (398)
                      +|+.+
T Consensus       508 ~~~~r  512 (1153)
T PLN03210        508 EPGER  512 (1153)
T ss_pred             CCCcc
Confidence            77655

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-41  Score=349.41  Aligned_cols=312  Identities=24%  Similarity=0.283  Sum_probs=248.0

Q ss_pred             ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC-CCccccceEEEEecCCcccHHHHHHHHHHHc
Q 015891           41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQFVPRIWVCTMSGQKTAESIVKRILKRL  119 (398)
Q Consensus        41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l  119 (398)
                      ||.+..++.+.+.|..    ++..+++|+||||+||||||+.++++.. ++.+|+.++|+. |++.++...++.+|+..+
T Consensus       161 VG~e~~~~kl~~~L~~----d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~~~~iq~~Il~~l  235 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLME----DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFTTRKIQQTILERL  235 (889)
T ss_pred             ccHHHHHHHHHHHhcc----CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-EcccccHHhHHHHHHHHh
Confidence            9999999999999976    3349999999999999999999999977 899999999999 999999999999999999


Q ss_pred             CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCC-CCCEEEEEeCChHHHHHhcCCCceE
Q 015891          120 GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRG-YGERLIITSRNEKLTTEMVGEENLH  198 (398)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~-~gs~IIiTTR~~~v~~~~~~~~~~~  198 (398)
                      +........   .........+.+.|..+|++|||||||+...|+.+...+|.. .||+|++|||+..|+....++...+
T Consensus       236 ~~~~~~~~~---~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~  312 (889)
T KOG4658|consen  236 GLLDEEWED---KEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI  312 (889)
T ss_pred             ccCCcccch---hhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence            875433221   223677889999999999999999999998899999999854 6899999999999999844778899


Q ss_pred             EcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHhHHHHHh
Q 015891          199 QLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILR  278 (398)
Q Consensus       199 ~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~w~~~L~  278 (398)
                      +++.|+. +++|.||++.++......++...+.+++++++|+|+|||+..          ||..|..+ .+..+|+++.+
T Consensus       313 ~v~~L~~-~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~v----------iG~~ma~K-~t~~eW~~~~~  380 (889)
T KOG4658|consen  313 EVECLTP-EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNV----------LGGLLACK-KTVQEWRRALN  380 (889)
T ss_pred             cccccCc-cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHH----------HHHHhcCC-CcHHHHHHHHc
Confidence            9999999 779999999665544444444788999999999999999655          89988755 48889999999


Q ss_pred             hhccC-CCCC--CcchhhhhhHHHHHHHHH-hh-hcc----hHhh----hHHHHHHHHHhCCch----------HH---H
Q 015891          279 DSANL-PNSK--QLEEEVEKLQGQITKMIE-EK-RAK----QREQ----RKNAEELKRKCGGLP----------LA---A  332 (398)
Q Consensus       279 ~~~~l-p~~~--~~~~~~~~l~~sy~~l~~-e~-cf~----~~~~----~~~~~~il~~~g~~~----------~~---~  332 (398)
                      .+... +...  ....++.+++.|||.|.. -+ ||.    +++|    .+.....|.+-||+.          .|   +
T Consensus       381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i  460 (889)
T KOG4658|consen  381 VLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI  460 (889)
T ss_pred             cccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence            88743 3222  244556799999999996 33 774    4444    445555566567541          12   4


Q ss_pred             HHHhhhhhhhhhhH-----HHHHHHHHHHHHHHHHHhhcCCCCCch
Q 015891          333 KLLGEIKAQEELRR-----KEKLLKDILDEIERVVAANRRPEPETQ  373 (398)
Q Consensus       333 ~~l~~~~~~~~i~~-----~~~~mHdll~dm~~~i~~~e~~~~~~~  373 (398)
                      ..|..+ ++....+     ..+.|||++||||.+|+.+...+.+..
T Consensus       461 ~~LV~~-~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~  505 (889)
T KOG4658|consen  461 EELVRA-SLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQ  505 (889)
T ss_pred             HHHHHH-HHHhhcccccceeEEEeeHHHHHHHHHHhccccccccce
Confidence            445555 5544433     567899999999999999666555543

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=3.7e-34  Score=268.43  Aligned_cols=246  Identities=23%  Similarity=0.368  Sum_probs=184.4

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD  122 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~  122 (398)
                      |++++++|.+.|..  ..+..++|+|+||||+||||||..++++..+..+|+.++|+. ++...+...++..++.+++..
T Consensus         1 re~~~~~l~~~L~~--~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~~~~~~~~~~i~~~l~~~   77 (287)
T PF00931_consen    1 REKEIEKLKDWLLD--NSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKNPSLEQLLEQILRQLGEP   77 (287)
T ss_dssp             -HHHHHHHHHHHHT--TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-SCCHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHhhC--CCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-ccccccccccccccccccccc
Confidence            78999999999987  458899999999999999999999998866788999999999 888888889999999999887


Q ss_pred             CCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          123 DGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ....  ....+.+.....+.+.+.++++||||||||+...++.+...++ ...+++||||||+..++..+......|+++
T Consensus        78 ~~~~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~  155 (287)
T PF00931_consen   78 DSSI--SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE  155 (287)
T ss_dssp             -STS--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred             cccc--ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5432  1235567788899999999999999999999987777776665 456999999999998887764446789999


Q ss_pred             CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHhHHHHHhhhc
Q 015891          202 PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSA  281 (398)
Q Consensus       202 ~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~w~~~L~~~~  281 (398)
                      +|+. ++++.||.+..+......++...+.+++|+++|+|+|+||..          +|+++..+. +..+|+++++.+.
T Consensus       156 ~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~----------~a~~l~~~~-~~~~w~~~~~~l~  223 (287)
T PF00931_consen  156 PLSE-EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKL----------IASYLRSKS-TVDEWEEALEELE  223 (287)
T ss_dssp             S--H-HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHH----------HHHHHHHHH-SSSSHHHHHHHHH
T ss_pred             cccc-cccccccccccccccccccccccccccccccccccccccccc----------ccccccccc-ccccccccccccc
Confidence            9999 668888888554433222334455889999999999999776          666664433 6788999988777


Q ss_pred             cCC--CCCCcchhhhhhHHHHHHHHH
Q 015891          282 NLP--NSKQLEEEVEKLQGQITKMIE  305 (398)
Q Consensus       282 ~lp--~~~~~~~~~~~l~~sy~~l~~  305 (398)
                      +..  ........+..+..||+.|..
T Consensus       224 ~~~~~~~~~~~~~~~~l~~s~~~L~~  249 (287)
T PF00931_consen  224 NSLRESRDYDRSVFSALELSYDSLPD  249 (287)
T ss_dssp             HCHTCSSGSCHHHHHHHHHHHHSSHT
T ss_pred             ccccccccccccccccceechhcCCc
Confidence            322  222456677799999999988

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.33  E-value=1.4e-11  Score=111.33  Aligned_cols=198  Identities=21%  Similarity=0.282  Sum_probs=102.3

Q ss_pred             cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH---HH-----
Q 015891           40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE---SI-----  111 (398)
Q Consensus        40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~---~~-----  111 (398)
                      |+||+++++.|.+++..    +....+.|+|+.|+|||+|++.+.+.  ....-...+|+. ........   ..     
T Consensus         1 F~gR~~el~~l~~~l~~----~~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~~   73 (234)
T PF01637_consen    1 FFGREKELEKLKELLES----GPSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYID-FLEESNESSLRSFIEETS   73 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHC-CTTBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh----hcCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEe-cccchhhhHHHHHHHHHH
Confidence            79999999999999965    45788999999999999999999987  322222334443 22222211   11     


Q ss_pred             -HHHHHHHcCCCCCCCC-----CcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCH--------HHHHHHHhHcC---C
Q 015891          112 -VKRILKRLGVDDGTTN-----SFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDM--------EVCKHLSKVLP---R  172 (398)
Q Consensus       112 -~~~il~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~--------~~~~~l~~~l~---~  172 (398)
                       ...+...++.......     .............+.+.+..  ++.+||+||++..        .....+...+.   .
T Consensus        74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~  153 (234)
T PF01637_consen   74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS  153 (234)
T ss_dssp             HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence             1111111211000000     00001112223333333332  4599999998833        22333443333   2


Q ss_pred             CCCCEEEEEeCChHHHHH-------hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          173 GYGERLIITSRNEKLTTE-------MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      .....+|++.....+...       +.+....+.++||+. ++++.++...+... ... +...+..++|...++|.|..
T Consensus       154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~  230 (234)
T PF01637_consen  154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSK-EEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRY  230 (234)
T ss_dssp             -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----H-HHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHH
T ss_pred             cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCH-HHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHH
Confidence            445556666665555544       123345599999999 77899999876554 322 22344778999999999987


Q ss_pred             hh
Q 015891          246 AV  247 (398)
Q Consensus       246 i~  247 (398)
                      |.
T Consensus       231 l~  232 (234)
T PF01637_consen  231 LQ  232 (234)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.31  E-value=1.8e-10  Score=106.79  Aligned_cols=182  Identities=16%  Similarity=0.179  Sum_probs=106.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ....+.|+|++|+|||||++.+++.... ..+ ..+|+  +....+...++..++..++.+......  ......+...+
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~--~~~~~~~~~~l~~i~~~lG~~~~~~~~--~~~~~~l~~~l  115 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL--VNTRVDAEDLLRMVAADFGLETEGRDK--AALLRELEDFL  115 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee--eCCCCCHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHHH
Confidence            4568999999999999999999987321 111 12233  233456678888999988876432100  01111222222


Q ss_pred             HHH-HhCCCcEEEecCCCC--HHHHHHHHhHcCC----CCCCEEEEEeCChHHHHHhc---------CCCceEEcCCCCC
Q 015891          142 QQQ-LIGKRYLIVLDDFED--MEVCKHLSKVLPR----GYGERLIITSRNEKLTTEMV---------GEENLHQLQPLSD  205 (398)
Q Consensus       142 ~~~-l~~k~~LlVLDdv~~--~~~~~~l~~~l~~----~~gs~IIiTTR~~~v~~~~~---------~~~~~~~l~~L~~  205 (398)
                      ... ..+++.++|+||++.  ...++.+......    .....|++|... .+...+.         .....+.+++++.
T Consensus       116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~  194 (269)
T TIGR03015       116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDR  194 (269)
T ss_pred             HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence            222 256788999999994  4455555543321    122244555443 2222211         1134678999999


Q ss_pred             hhHHHHHHHhhhCCCCCc-chHHHHHHHHHHHHhcCCCchhhhccCC
Q 015891          206 QESCWLIYRDSVRDKDAQ-LKSQARKDLEEKLEKLQGQNEDAVNFPS  251 (398)
Q Consensus       206 ~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~I~~~c~GlPlai~~~a~  251 (398)
                       ++...++.+.+...... ......+..+.|++.++|.|..|..+|.
T Consensus       195 -~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~  240 (269)
T TIGR03015       195 -EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCD  240 (269)
T ss_pred             -HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHH
Confidence             66777777654322111 1112345888999999999999877553

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.30  E-value=1.2e-10  Score=114.21  Aligned_cols=175  Identities=18%  Similarity=0.155  Sum_probs=111.6

Q ss_pred             CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHH
Q 015891           36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~  113 (398)
                      .|+.|+||++++++|...|...........+.|+|++|+|||++++.++++  .....  -..+++. .....+...++.
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in-~~~~~~~~~~~~  104 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYIN-CQIDRTRYAIFS  104 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEE-CCcCCCHHHHHH
Confidence            457899999999999999865323345566889999999999999999987  32222  2345555 555566778888


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCHH------HHHHHHhHcCCCCC--CEEEEEeC
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDME------VCKHLSKVLPRGYG--ERLIITSR  183 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~------~~~~l~~~l~~~~g--s~IIiTTR  183 (398)
                      .++.++.......   .....+.....+.+.+..  ++.+|||||++...      .+..+........+  ..+|.++.
T Consensus       105 ~i~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~  181 (394)
T PRK00411        105 EIARQLFGHPPPS---SGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISS  181 (394)
T ss_pred             HHHHHhcCCCCCC---CCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEEC
Confidence            9999886522111   112345555666666653  46899999998542      23333333222233  33677777


Q ss_pred             ChHHHHHhc------CCCceEEcCCCCChhHHHHHHHhhh
Q 015891          184 NEKLTTEMV------GEENLHQLQPLSDQESCWLIYRDSV  217 (398)
Q Consensus       184 ~~~v~~~~~------~~~~~~~l~~L~~~e~~~~l~~~~~  217 (398)
                      +..+...+.      -....+.++|++. ++...++...+
T Consensus       182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~-~e~~~il~~r~  220 (394)
T PRK00411        182 DLTFLYILDPRVKSVFRPEEIYFPPYTA-DEIFDILKDRV  220 (394)
T ss_pred             CcchhhhcCHHHHhcCCcceeecCCCCH-HHHHHHHHHHH
Confidence            654433221      0134678999998 66777766543

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.28  E-value=1.4e-10  Score=112.52  Aligned_cols=206  Identities=17%  Similarity=0.173  Sum_probs=123.1

Q ss_pred             CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc------cceEEEEecCCcccH
Q 015891           35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF------VPRIWVCTMSGQKTA  108 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~~v~~v~~~~~~  108 (398)
                      .-|+.++||+++++.|...|...........+.|+|++|+|||++++.+++.  .....      -..+|+. .....+.
T Consensus        12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in-~~~~~~~   88 (365)
T TIGR02928        12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVN-CQILDTL   88 (365)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEE-CCCCCCH
Confidence            3456899999999999999875223345567999999999999999999875  22111      1245565 5555667


Q ss_pred             HHHHHHHHHHcC---CCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCH-----HHHHHHHhH--cCC--CC
Q 015891          109 ESIVKRILKRLG---VDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM-----EVCKHLSKV--LPR--GY  174 (398)
Q Consensus       109 ~~~~~~il~~l~---~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~-----~~~~~l~~~--l~~--~~  174 (398)
                      ..++..++.++.   ...+.    ......+....+...+.  +++.+||||+++..     +.+..+...  ...  +.
T Consensus        89 ~~~~~~i~~~l~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~  164 (365)
T TIGR02928        89 YQVLVELANQLRGSGEEVPT----TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA  164 (365)
T ss_pred             HHHHHHHHHHHhhcCCCCCC----CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence            788888888883   22111    11223334444555553  45789999999955     112222222  111  12


Q ss_pred             CCEEEEEeCChHHHHHhc----CC--CceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          175 GERLIITSRNEKLTTEMV----GE--ENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~----~~--~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      ...+|+++++......+.    ..  ...+.++|.+. ++...++...+..  .....++...+...+++....|.+..+
T Consensus       165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~-~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a  243 (365)
T TIGR02928       165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA-EELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA  243 (365)
T ss_pred             eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH-HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence            345666666554432221    11  25688999998 6677777764421  111233333345556677777887655


Q ss_pred             hc
Q 015891          247 VN  248 (398)
Q Consensus       247 ~~  248 (398)
                      ..
T Consensus       244 l~  245 (365)
T TIGR02928       244 ID  245 (365)
T ss_pred             HH
Confidence            44

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.19  E-value=5e-10  Score=100.50  Aligned_cols=130  Identities=20%  Similarity=0.262  Sum_probs=87.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC-CCc----------cccceEEEEecCCcc------------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKT----------QFVPRIWVCTMSGQK------------------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~----------~F~~~~~v~~v~~~~------------------------  106 (398)
                      .-.+++|+||+|+|||||++.+..-.. .+.          .+.....+.++.+..                        
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~  108 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW  108 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence            347999999999999999999976310 000          011011222233210                        


Q ss_pred             ------cHHHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          107 ------TAESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       107 ------~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                            ...+...+.++.+++..-....+ +.++++.++..++++|..++-|++||++.   |......+...+.  ...
T Consensus       109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e  188 (254)
T COG1121         109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE  188 (254)
T ss_pred             cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence                  11356778888888876444433 48999999999999999999999999998   4433333333332  233


Q ss_pred             CCEEEEEeCChHHHHHh
Q 015891          175 GERLIITSRNEKLTTEM  191 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~  191 (398)
                      |+.||++|||-+.....
T Consensus       189 g~tIl~vtHDL~~v~~~  205 (254)
T COG1121         189 GKTVLMVTHDLGLVMAY  205 (254)
T ss_pred             CCEEEEEeCCcHHhHhh
Confidence            99999999998766654

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.18  E-value=1.4e-09  Score=101.92  Aligned_cols=173  Identities=20%  Similarity=0.330  Sum_probs=100.7

Q ss_pred             CCcccchhhH---HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFANEE---LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      +++||.+.-+   .-|..++    ..+......+|||+|+||||||+.+.+.  ....|..      ++-..+-.+-++.
T Consensus        24 de~vGQ~HLlg~~~~lrr~v----~~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~------~sAv~~gvkdlr~   91 (436)
T COG2256          24 DEVVGQEHLLGEGKPLRRAV----EAGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFEA------LSAVTSGVKDLRE   91 (436)
T ss_pred             HHhcChHhhhCCCchHHHHH----hcCCCceeEEECCCCCCHHHHHHHHHHh--hCCceEE------eccccccHHHHHH
Confidence            4456655443   3355556    3467888899999999999999999987  5555543      2222222222222


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEE--EeCChHHH--
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLII--TSRNEKLT--  188 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIi--TTR~~~v~--  188 (398)
                      +++.                     .-.....+++.+|++|+|+  +..+.+.|.+..  ..|.-|+|  ||-++.+.  
T Consensus        92 i~e~---------------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v--E~G~iilIGATTENPsF~ln  148 (436)
T COG2256          92 IIEE---------------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV--ENGTIILIGATTENPSFELN  148 (436)
T ss_pred             HHHH---------------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh--cCCeEEEEeccCCCCCeeec
Confidence            2221                     0112234679999999999  556656544333  33444443  66666432  


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchH----HHHHHHHHHHHhcCCCchhh
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS----QARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~----~~~~~~~~I~~~c~GlPlai  246 (398)
                      ..+.....+|+++||+. ++...++.++.-........    ...+....+++.++|--.+.
T Consensus       149 ~ALlSR~~vf~lk~L~~-~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a  209 (436)
T COG2256         149 PALLSRARVFELKPLSS-EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA  209 (436)
T ss_pred             HHHhhhhheeeeecCCH-HHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence            22235578999999999 77888888754333222220    11224445566666655543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.17  E-value=2.5e-10  Score=100.90  Aligned_cols=90  Identities=19%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHcCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEE
Q 015891          109 ESIVKRILKRLGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLII  180 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIi  180 (398)
                      ......+++.+++.+..  ..+.+.+++++++..++++|..+|-+|+.|+++   |.+.-+.+...+.   ...|.+||+
T Consensus       119 ~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~  198 (226)
T COG1136         119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM  198 (226)
T ss_pred             HHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence            44566778888887432  335569999999999999999999999999999   4433333333332   345889999


Q ss_pred             EeCChHHHHHhcCCCceEEcC
Q 015891          181 TSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       181 TTR~~~v~~~~~~~~~~~~l~  201 (398)
                      .|||..++..+   ++++.+.
T Consensus       199 VTHd~~lA~~~---dr~i~l~  216 (226)
T COG1136         199 VTHDPELAKYA---DRVIELK  216 (226)
T ss_pred             EcCCHHHHHhC---CEEEEEe
Confidence            99999999875   4455553

>PF05729 NACHT: NACHT domain

Probab=99.17  E-value=2.7e-10  Score=97.29  Aligned_cols=144  Identities=22%  Similarity=0.362  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCcc----ccceEEEEecCCcccHH---HHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQ----FVPRIWVCTMSGQKTAE---SIVKRILKRLGVDDGTTNSFEGQGLAF  136 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~v~~v~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~  136 (398)
                      +++.|+|.+|+||||+++.++........    +...+|+. .+......   .+...+........        .....
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~--------~~~~~   71 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESI--------APIEE   71 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccch--------hhhHH
Confidence            57899999999999999999866211111    34455555 44322211   23333333332211        11111


Q ss_pred             HHHHHHHHHhCCCcEEEecCCCCHH----------HHHHHHhHcCC--CCCCEEEEEeCChHH--HHHhcCCCceEEcCC
Q 015891          137 LDYVLQQQLIGKRYLIVLDDFEDME----------VCKHLSKVLPR--GYGERLIITSRNEKL--TTEMVGEENLHQLQP  202 (398)
Q Consensus       137 ~~~~l~~~l~~k~~LlVLDdv~~~~----------~~~~l~~~l~~--~~gs~IIiTTR~~~v--~~~~~~~~~~~~l~~  202 (398)
                        .........+++++|+|++++..          ..+.+...++.  .++++++||+|....  ..........+++.+
T Consensus        72 --~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~  149 (166)
T PF05729_consen   72 --LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP  149 (166)
T ss_pred             --HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence              11112224679999999998431          22344445543  468999999998766  332223446899999


Q ss_pred             CCChhHHHHHHHhhhCC
Q 015891          203 LSDQESCWLIYRDSVRD  219 (398)
Q Consensus       203 L~~~e~~~~l~~~~~~~  219 (398)
                      +++ ++...++++.|.+
T Consensus       150 ~~~-~~~~~~~~~~f~~  165 (166)
T PF05729_consen  150 FSE-EDIKQYLRKYFSN  165 (166)
T ss_pred             CCH-HHHHHHHHHHhhc
Confidence            999 7788888887753

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.11  E-value=1.4e-09  Score=91.99  Aligned_cols=144  Identities=12%  Similarity=0.163  Sum_probs=95.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc---c---c----------------ceEEEEe-----------c-----
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ---F---V----------------PRIWVCT-----------M-----  102 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~---F---~----------------~~~~v~~-----------v-----  102 (398)
                      +.-.++.|+|++|+|||||.+.+|..++-...   |   +                +.+|.++           +     
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~  105 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR  105 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence            45678999999999999999999876321110   0   0                0111110           0     


Q ss_pred             ---CCcccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          103 ---SGQKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       103 ---~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                         .+.....+.....++..|+..... .+...+++++++..+++++-++|-+|+-|+++   |++....+...+.  +.
T Consensus       106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr  185 (223)
T COG2884         106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR  185 (223)
T ss_pred             ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh
Confidence               012234556677788888876533 34558999999999999999999999999998   4433333333443  45


Q ss_pred             CCCEEEEEeCChHHHHHhcCCCceEEcCCCC
Q 015891          174 YGERLIITSRNEKLTTEMVGEENLHQLQPLS  204 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~  204 (398)
                      .|++||++|||.++...+....-.++-+.|.
T Consensus       186 ~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~  216 (223)
T COG2884         186 LGTTVLMATHDLELVNRMRHRVLALEDGRLV  216 (223)
T ss_pred             cCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence            6999999999999988863333333333333

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.10  E-value=1e-09  Score=94.89  Aligned_cols=130  Identities=17%  Similarity=0.220  Sum_probs=91.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe------------------cCC------------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT------------------MSG------------------  104 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~------------------v~~------------------  104 (398)
                      ..-.+++|+||+|+|||||.+.+..=+...   .+.+|+..                  |.+                  
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence            345789999999999999999995432111   11222211                  011                  


Q ss_pred             -------cccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          105 -------QKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       105 -------~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                             .....+....+|..+|+.+.. ..+...+++++++..|++.|.-+|-+++||+++   |++....+...+.  
T Consensus       103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L  182 (240)
T COG1126         103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL  182 (240)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence                   122345567788888887743 345568999999999999999999999999999   4554444333332  


Q ss_pred             CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...|-+.|+.||+..++..+.+
T Consensus       183 A~eGmTMivVTHEM~FAr~Vad  204 (240)
T COG1126         183 AEEGMTMIIVTHEMGFAREVAD  204 (240)
T ss_pred             HHcCCeEEEEechhHHHHHhhh
Confidence            3468899999999999998743

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.09  E-value=2.5e-09  Score=115.86  Aligned_cols=196  Identities=15%  Similarity=0.169  Sum_probs=121.8

Q ss_pred             CCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHH
Q 015891           33 KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESI  111 (398)
Q Consensus        33 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~  111 (398)
                      ++..+..+|-|+.-.+.+..       ....+++.|.||+|.||||++..+...  .    ..+.|++ +. ...+...+
T Consensus         9 ~p~~~~~~~~R~rl~~~l~~-------~~~~~~~~v~apaG~GKTtl~~~~~~~--~----~~~~w~~-l~~~d~~~~~f   74 (903)
T PRK04841          9 RPVRLHNTVVRERLLAKLSG-------ANNYRLVLVTSPAGYGKTTLISQWAAG--K----NNLGWYS-LDESDNQPERF   74 (903)
T ss_pred             CCCCccccCcchHHHHHHhc-------ccCCCeEEEECCCCCCHHHHHHHHHHh--C----CCeEEEe-cCcccCCHHHH
Confidence            33445678888866665542       246789999999999999999999864  2    2688998 75 44556666


Q ss_pred             HHHHHHHcCCCCCCC-C-------CcCCCchHHHHHHHHHHHh--CCCcEEEecCCCC---HHHHHHHHhHcCC-CCCCE
Q 015891          112 VKRILKRLGVDDGTT-N-------SFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFED---MEVCKHLSKVLPR-GYGER  177 (398)
Q Consensus       112 ~~~il~~l~~~~~~~-~-------~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~---~~~~~~l~~~l~~-~~gs~  177 (398)
                      +..++..++...... .       .............+...+.  ..+.+|||||+..   ....+.+...++. .++.+
T Consensus        75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~  154 (903)
T PRK04841         75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT  154 (903)
T ss_pred             HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence            677777664211110 0       0001122223333333333  5789999999984   3334455555553 34678


Q ss_pred             EEEEeCChH-H-HHHhcCCCceEEcC----CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          178 LIITSRNEK-L-TTEMVGEENLHQLQ----PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       178 IIiTTR~~~-v-~~~~~~~~~~~~l~----~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      +|||||... + ...+.......++.    +|+. +++..|+....+..   .+   .+...+|.+.|+|.|+++..+
T Consensus       155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~-~e~~~ll~~~~~~~---~~---~~~~~~l~~~t~Gwp~~l~l~  225 (903)
T PRK04841        155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDH-QEAQQFFDQRLSSP---IE---AAESSRLCDDVEGWATALQLI  225 (903)
T ss_pred             EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCH-HHHHHHHHhccCCC---CC---HHHHHHHHHHhCChHHHHHHH
Confidence            889999842 1 11111123345565    8998 66788887765542   11   236678999999999997653

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.08  E-value=7.2e-10  Score=104.81  Aligned_cols=174  Identities=17%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      .+|||++..++.|..++.... .......+.++|++|+|||+||+.+++.  ....+.   .+. ....... ..+...+
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~-~~~~~~~-~~l~~~l   76 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITS-GPALEKP-GDLAAIL   76 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---Eec-cchhcCc-hhHHHHH
Confidence            469999999999999886411 1234566889999999999999999987  332221   111 1111111 1111222


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHc--------------------CCCC
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVL--------------------PRGY  174 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l--------------------~~~~  174 (398)
                      ..+                           ....+|++||++.  ....+.+...+                    +..+
T Consensus        77 ~~~---------------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~  129 (305)
T TIGR00635        77 TNL---------------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP  129 (305)
T ss_pred             Hhc---------------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC
Confidence            221                           1234556666552  12222222111                    1112


Q ss_pred             CCEEEEEeCChHHHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          175 GERLIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      .+-|..||+...+...+.. ....+.+++++. ++...++.+..+......++   +....|++.|+|.|..+..+
T Consensus       130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~-~e~~~il~~~~~~~~~~~~~---~al~~ia~~~~G~pR~~~~l  201 (305)
T TIGR00635       130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTV-EELAEIVSRSAGLLNVEIEP---EAALEIARRSRGTPRIANRL  201 (305)
T ss_pred             eEEEEecCCccccCHHHHhhcceEEEeCCCCH-HHHHHHHHHHHHHhCCCcCH---HHHHHHHHHhCCCcchHHHH
Confidence            3445566665443332211 135689999998 66788887755443333333   36678999999999765543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.08  E-value=9.7e-10  Score=108.14  Aligned_cols=174  Identities=20%  Similarity=0.327  Sum_probs=104.2

Q ss_pred             CCcccchhhHHH---HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFANEELH---LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      +++||++..+..   |..++..    .....+.|+|++|+||||||+.+++.  ....|     +. ++........++.
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~----~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~-l~a~~~~~~~ir~   79 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEA----GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EA-LSAVTSGVKDLRE   79 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHc----CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EE-EecccccHHHHHH
Confidence            578999888766   8888754    45667889999999999999999987  33333     22 2211111111122


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHH-HHhCCCcEEEecCCCC--HHHHHHHHhHcCCCCCCEEEE--EeCChH--H
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQ-QLIGKRYLIVLDDFED--MEVCKHLSKVLPRGYGERLII--TSRNEK--L  187 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~gs~IIi--TTR~~~--v  187 (398)
                      ++..                      ... ...+++.+|++||++.  ..+.+.|...+..  +..++|  ||.+..  +
T Consensus        80 ii~~----------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l  135 (413)
T PRK13342         80 VIEE----------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEV  135 (413)
T ss_pred             HHHH----------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhc
Confidence            2211                      111 1134678999999994  3555555555533  444444  344432  2


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ...+......+.+.+++. ++...++.+.+............+..+.|++.|+|.+..+..
T Consensus       136 ~~aL~SR~~~~~~~~ls~-e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln  195 (413)
T PRK13342        136 NPALLSRAQVFELKPLSE-EDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALN  195 (413)
T ss_pred             cHHHhccceeeEeCCCCH-HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence            222334457899999998 778888887654321110012234667788889999877654

>PRK06893 DNA replication initiation factor; Validated

Probab=99.07  E-value=2.6e-09  Score=96.55  Aligned_cols=149  Identities=16%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ....+.|+|++|+|||+|++++++.  .......+.|+. +...   ......                          +
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~-~~~~---~~~~~~--------------------------~   85 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIP-LSKS---QYFSPA--------------------------V   85 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEee-HHHh---hhhhHH--------------------------H
Confidence            3467899999999999999999987  333333456666 3210   000000                          1


Q ss_pred             HHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEE-eCC---------hHHHHHhcCCCceEEcCCCCC
Q 015891          142 QQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIIT-SRN---------EKLTTEMVGEENLHQLQPLSD  205 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiT-TR~---------~~v~~~~~~~~~~~~l~~L~~  205 (398)
                      .+.+ .+.-+|+|||++.    ..|.+.+...+.  ...++++|++ ++.         .++.+.+ .....+++++++.
T Consensus        86 ~~~~-~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl-~~g~~~~l~~pd~  163 (229)
T PRK06893         86 LENL-EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL-TWGEIYQLNDLTD  163 (229)
T ss_pred             Hhhc-ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH-hcCCeeeCCCCCH
Confidence            1111 2346999999994    344444544444  2345666554 443         3555554 4467899999998


Q ss_pred             hhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          206 QESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       206 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                       +..+.++++.+...+...++   +...-|++++.|-...+..
T Consensus       164 -e~~~~iL~~~a~~~~l~l~~---~v~~~L~~~~~~d~r~l~~  202 (229)
T PRK06893        164 -EQKIIVLQRNAYQRGIELSD---EVANFLLKRLDRDMHTLFD  202 (229)
T ss_pred             -HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHH
Confidence             77888888744333333333   3566677777777666544

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.05  E-value=1.7e-09  Score=97.67  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=87.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc--------------eEEEEe---------------cC-----
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP--------------RIWVCT---------------MS-----  103 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~--------------~~~v~~---------------v~-----  103 (398)
                      ..-.+++|.||+|+|||||.+.++.-.....   .++.              ..++..               .+     
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~  105 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL  105 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence            3467999999999999999999965311000   0000              111110               00     


Q ss_pred             ---C--cccHHHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHh--HcC
Q 015891          104 ---G--QKTAESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSK--VLP  171 (398)
Q Consensus       104 ---~--~~~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~--~l~  171 (398)
                         .  .....+...+.++.++...-..+.. +.+++++++..+++.|.+++-+++||++.+.    .+.+.+.-  .+.
T Consensus       106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~  185 (258)
T COG1120         106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN  185 (258)
T ss_pred             ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence               0  1112235667788888776544433 3899999999999999999999999999943    33332221  222


Q ss_pred             CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...|..||+++||.+.+..+++
T Consensus       186 ~~~~~tvv~vlHDlN~A~ryad  207 (258)
T COG1120         186 REKGLTVVMVLHDLNLAARYAD  207 (258)
T ss_pred             HhcCCEEEEEecCHHHHHHhCC
Confidence            4568899999999999888644

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.04  E-value=2.2e-09  Score=96.52  Aligned_cols=150  Identities=17%  Similarity=0.188  Sum_probs=106.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEec--C--CcccHHHHHHHHHHHcCCCCC--CCCCcCCCch
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTM--S--GQKTAESIVKRILKRLGVDDG--TTNSFEGQGL  134 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v--~--~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~  134 (398)
                      .+-.+++|+|.+|+|||||++.+..=  ..... +.+++..-  .  ......+.+.+++..+|+...  ...+.+.+++
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L--~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG  113 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGL--EEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG  113 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcC--cCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence            35678999999999999999999885  33333 33333201  0  122344567788888887653  2334558999


Q ss_pred             HHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChh
Q 015891          135 AFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQE  207 (398)
Q Consensus       135 ~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e  207 (398)
                      +.++..++++|.-++-++|.|++.+.       ..++.+ .-+....|-..+++|||-.+...+++...++.++..-+..
T Consensus       114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL-~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g  192 (268)
T COG4608         114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL-KDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIG  192 (268)
T ss_pred             hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHH-HHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEec
Confidence            99999999999999999999999843       222222 2233455889999999999999987777777777777655


Q ss_pred             HHHHHHH
Q 015891          208 SCWLIYR  214 (398)
Q Consensus       208 ~~~~l~~  214 (398)
                      ....+|.
T Consensus       193 ~~~~~~~  199 (268)
T COG4608         193 PTEEVFS  199 (268)
T ss_pred             CHHHHhh
Confidence            5666665

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.04  E-value=3e-09  Score=106.38  Aligned_cols=135  Identities=23%  Similarity=0.270  Sum_probs=93.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-----cceEEEEecCCcccH----------------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-----VPRIWVCTMSGQKTA----------------------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-----~~~~~v~~v~~~~~~----------------------------  108 (398)
                      .-..|||+|.+|+|||||.+.+...  .....     +..+.+.++.+....                            
T Consensus        28 ~G~riGLvG~NGaGKSTLLkilaG~--~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~  105 (530)
T COG0488          28 PGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAY  105 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC--CcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4567999999999999999999876  22221     112223333332111                            


Q ss_pred             --------------------------HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---C
Q 015891          109 --------------------------ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---D  159 (398)
Q Consensus       109 --------------------------~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~  159 (398)
                                                ..-...++..+++.....+-.+.+++++.+..|++.|-.++-+|+||+++   |
T Consensus       106 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD  185 (530)
T COG0488         106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD  185 (530)
T ss_pred             HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence                                      12233455566666553334458999999999999999999999999999   4


Q ss_pred             HHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          160 MEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       160 ~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      .+....|..++..-+| .+||+|||+.++..++.  +++++.
T Consensus       186 ~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t--~I~~ld  224 (530)
T COG0488         186 LESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVAT--HILELD  224 (530)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhh--heEEec
Confidence            4666667777765556 89999999999998754  344443

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.99  E-value=4e-09  Score=100.68  Aligned_cols=174  Identities=16%  Similarity=0.134  Sum_probs=100.2

Q ss_pred             CCCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      .++|+|++..++.+..++.... .......+.|+|++|+|||+||+.+++.  ....+.   ++. .. .......+..+
T Consensus        24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~~---~~~-~~-~~~~~~~l~~~   96 (328)
T PRK00080         24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNIR---ITS-GP-ALEKPGDLAAI   96 (328)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCeE---EEe-cc-cccChHHHHHH
Confidence            3679999999999988886411 2344567899999999999999999987  332221   111 11 11111112222


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcC-------------------C-C
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLP-------------------R-G  173 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~-------------------~-~  173 (398)
                      +..+                           .+..+|++||++..  ...+.+...+.                   . .
T Consensus        97 l~~l---------------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~  149 (328)
T PRK00080         97 LTNL---------------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP  149 (328)
T ss_pred             HHhc---------------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence            2221                           23446666666521  12222221110                   0 1


Q ss_pred             CCCEEEEEeCChHHHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          174 YGERLIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +.+-|..|++...+...+.. ....+++++++. ++...++.+.........++   +.+..|++.|+|.|..+..
T Consensus       150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~-~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~  221 (328)
T PRK00080        150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTV-EELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANR  221 (328)
T ss_pred             CceEEeecCCcccCCHHHHHhcCeeeecCCCCH-HHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHH
Confidence            13445566664433322211 135689999998 66888888765544443333   3678899999999976554

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.98  E-value=7.8e-09  Score=91.12  Aligned_cols=144  Identities=16%  Similarity=0.271  Sum_probs=94.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-------------C-----ccccceE--EEEe---cCCcc-----------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-------------K-----TQFVPRI--WVCT---MSGQK-----------  106 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-------------~-----~~F~~~~--~v~~---v~~~~-----------  106 (398)
                      ..-.+++|+|++|+|||||++.++.-.+-             .     ..|..+-  |-+-   +....           
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~  110 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR  110 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence            34568999999999999999999643110             0     0122111  1110   00001           


Q ss_pred             -----cHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCC
Q 015891          107 -----TAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPR  172 (398)
Q Consensus       107 -----~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~  172 (398)
                           ...+...++++++++...  ...+.+.++++.++..+.++|.-++-+||+|++.+.       ..++.|... ..
T Consensus       111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l-~~  189 (252)
T COG1124         111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL-KK  189 (252)
T ss_pred             cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH-HH
Confidence                 112225678888888764  333455899999999999999999999999999843       333444332 24


Q ss_pred             CCCCEEEEEeCChHHHHHhcCCCceEEcCCCCC
Q 015891          173 GYGERLIITSRNEKLTTEMVGEENLHQLQPLSD  205 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~  205 (398)
                      ..+-.+|++|||..++..+|+...++.-+.+.+
T Consensus       190 ~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE  222 (252)
T COG1124         190 ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE  222 (252)
T ss_pred             hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence            567899999999999988876654544444443

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.97  E-value=1.5e-07  Score=96.06  Aligned_cols=195  Identities=15%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+..++.|..++..   ..-...+.++|+.|+||||+|+.+.+...-...+..        ..+..-.....+..
T Consensus        16 dEVIGQe~Vv~~L~~aL~~---gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~--------~PCG~C~sCr~I~~   84 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDG---GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS--------QPCGVCRACREIDE   84 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC--------CCCcccHHHHHHhc
Confidence            6789999999999999864   223556789999999999999999876221111110        00000000111110


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~  189 (398)
                      .-..+.......+..+.+..+..+....    ..+..++|||+++.  ....+.|...+. ...+.++|+||++.+ +..
T Consensus        85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~  164 (830)
T PRK07003         85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV  164 (830)
T ss_pred             CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence            0000000000001122333333333221    23456999999994  455555655664 234677777777653 444


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......|.+++++. +.....+.+.+..++...++   +.+..|++.++|-.....
T Consensus       165 TIrSRCq~f~Fk~Ls~-eeIv~~L~~Il~~EgI~id~---eAL~lIA~~A~GsmRdAL  218 (830)
T PRK07003        165 TVLSRCLQFNLKQMPA-GHIVSHLERILGEERIAFEP---QALRLLARAAQGSMRDAL  218 (830)
T ss_pred             hhhhheEEEecCCcCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            4445578899999999 66777777766554433322   366778888888765433

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.97  E-value=1.4e-08  Score=87.56  Aligned_cols=127  Identities=18%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC-C--Ccc---cc--ceEEEEecCCcccHHHHHHHHHHHcCCCCC--CCCCcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-V--KTQ---FV--PRIWVCTMSGQKTAESIVKRILKRLGVDDG--TTNSFE  130 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~--~~~---F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~  130 (398)
                      ..-.+++|+|++|+|||||.+.+..+.. +  ...   |.  ...|+   .+        .+.+..+++...  ......
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~---~q--------~~~l~~~~L~~~~~~~~~~~   87 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI---DQ--------LQFLIDVGLGYLTLGQKLST   87 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE---hH--------HHHHHHcCCCccccCCCcCc
Confidence            3457899999999999999999864210 0  000   10  01121   11        467778887542  333445


Q ss_pred             CCchHHHHHHHHHHHhCC--CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          131 GQGLAFLDYVLQQQLIGK--RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       131 ~~~~~~~~~~l~~~l~~k--~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      .+.+++++..+.+.+..+  +-+++||++.   |....+.+...+.  ...|..||++||+.+....   .++++.+.
T Consensus        88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~---~d~i~~l~  162 (176)
T cd03238          88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS---ADWIIDFG  162 (176)
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh---CCEEEEEC
Confidence            788999999999999999  9999999998   4444444444443  2257889999999987643   34556553

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.94  E-value=2e-08  Score=89.20  Aligned_cols=138  Identities=16%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC------------CCc-------ccc---ceEEEEecCCc------------c
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD------------VKT-------QFV---PRIWVCTMSGQ------------K  106 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~------------~~~-------~F~---~~~~v~~v~~~------------~  106 (398)
                      ..-.+|+|+|++|+|||||.+.++.=..            +..       -|.   -.-|.+ +.++            .
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T-v~~NV~l~l~~~~~~~~  105 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT-VLDNVALGLELRGKSKA  105 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhh-HHhhheehhhccccchH
Confidence            3567899999999999999999964211            000       011   112333 2221            1


Q ss_pred             cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEE
Q 015891          107 TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLI  179 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~II  179 (398)
                      ........++..+|+..- ...+...+++.+++..+++.|..++-+|++|++...      ..++.....++...+.+|+
T Consensus       106 e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl  185 (248)
T COG1116         106 EARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL  185 (248)
T ss_pred             hHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence            123467788888888763 344566899999999999999999999999999832      1111111223345678999


Q ss_pred             EEeCChHHHHHhcCCCceEEcC
Q 015891          180 ITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       180 iTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      +.|||-+-+..+.  ++++-+.
T Consensus       186 lVTHdi~EAv~Ls--dRivvl~  205 (248)
T COG1116         186 LVTHDVDEAVYLA--DRVVVLS  205 (248)
T ss_pred             EEeCCHHHHHhhh--CEEEEec
Confidence            9999988777764  3444443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.92  E-value=2.2e-08  Score=90.31  Aligned_cols=170  Identities=23%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             CCccc--chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHG--FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vG--R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ++|++  .+..++.+..++.    ......+.|+|++|+|||+||+.+++.  ........+++. +..-..   ....+
T Consensus        15 ~~~~~~~~~~~~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~-~~~~~~---~~~~~   84 (226)
T TIGR03420        15 DNFYAGGNAELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLP-LAELAQ---ADPEV   84 (226)
T ss_pred             cCcCcCCcHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEe-HHHHHH---hHHHH
Confidence            45653  4456777777763    245778999999999999999999876  222223344554 221110   00011


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCChH---
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNEK---  186 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~~---  186 (398)
                      +                          ..+ .+.-+||+||++..    .+.+.+...+.  ...+..+|+||+...   
T Consensus        85 ~--------------------------~~~-~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~  137 (226)
T TIGR03420        85 L--------------------------EGL-EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             H--------------------------hhc-ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence            1                          111 22358999999843    33455554443  123457888887432   


Q ss_pred             ------HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          187 ------LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       187 ------v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                            +...+ .....++++|++. ++...++.+.........++   +..+.|++.+.|.+..+..+
T Consensus       138 ~~~~~~L~~r~-~~~~~i~l~~l~~-~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~  201 (226)
T TIGR03420       138 PLRLPDLRTRL-AWGLVFQLPPLSD-EEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLMAL  201 (226)
T ss_pred             CcccHHHHHHH-hcCeeEecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHH
Confidence                  22222 2246799999999 66677776643322222223   35566777788888776553

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.90  E-value=2.8e-08  Score=86.44  Aligned_cols=126  Identities=18%  Similarity=0.230  Sum_probs=85.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe--cCCcccHH------HHHHHHHHHcCCCCCC-CCCcCCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT--MSGQKTAE------SIVKRILKRLGVDDGT-TNSFEGQ  132 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~--v~~~~~~~------~~~~~il~~l~~~~~~-~~~~~~~  132 (398)
                      .-.+++|.|++|+|||||++.++..  . ....+.+++..  +.. .+..      ..+.++++.+++.... ......+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS   99 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS   99 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence            4568999999999999999999886  2 23344444431  111 1111      1222366777765422 2233478


Q ss_pred             chHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC-CCEEEEEeCChHHHHHh
Q 015891          133 GLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY-GERLIITSRNEKLTTEM  191 (398)
Q Consensus       133 ~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~-gs~IIiTTR~~~v~~~~  191 (398)
                      .++.++..+.+.+...+-++++|++.   |....+.+...+.  ... +..||++||+......+
T Consensus       100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~  164 (180)
T cd03214         100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY  164 (180)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            99999999999999999999999999   4444445544443  122 68999999998876554

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.89  E-value=4.7e-08  Score=93.71  Aligned_cols=197  Identities=15%  Similarity=0.152  Sum_probs=107.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCccc-HHHHHH--
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKT-AESIVK--  113 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~-~~~~~~--  113 (398)
                      ++++|++..++.+..++..    +....+.++|++|+||||+|+.+++... ...+.. .+.++ ++.-.. ....+.  
T Consensus        15 ~~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~   88 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDS----PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFN-VADFFDQGKKYLVED   88 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEec-hhhhhhcchhhhhcC
Confidence            5789999999999998854    3445688999999999999999987621 111121 22333 221100 000000  


Q ss_pred             -HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCC
Q 015891          114 -RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRN  184 (398)
Q Consensus       114 -~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~  184 (398)
                       .....++..    ..............+....     ...+.+||+||++.  ....+.|...+. ....+++|+|+..
T Consensus        89 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~  164 (337)
T PRK12402         89 PRFAHFLGTD----KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ  164 (337)
T ss_pred             cchhhhhhhh----hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence             000000000    0000011122222222221     13456999999983  344445555553 3345778877754


Q ss_pred             h-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          185 E-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       185 ~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      . .+...+......+++.|++. ++...++.+.+...+...++   +..+.+++.++|.+..+..
T Consensus       165 ~~~~~~~L~sr~~~v~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~al~~l~~~~~gdlr~l~~  225 (337)
T PRK12402        165 PSKLIPPIRSRCLPLFFRAPTD-DELVDVLESIAEAEGVDYDD---DGLELIAYYAGGDLRKAIL  225 (337)
T ss_pred             hhhCchhhcCCceEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            3 33333334456788999998 66777777655444433333   3677788888887766543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.89  E-value=3.4e-08  Score=102.52  Aligned_cols=196  Identities=15%  Similarity=0.175  Sum_probs=111.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il  116 (398)
                      .++||.+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-...... .|..+     ...    ..+.
T Consensus        16 ddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-----~sC----~~i~   83 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-----SSC----VEIA   83 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-----hHH----HHHh
Confidence            6799999999999999864   123455689999999999999999887221111100 00000     000    0000


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHH----HHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQ----QLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLT  188 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~  188 (398)
                      ......-......+....+..+..+..    -..++..++|||+++  +....+.|...+-. ....++|++|.+ ..+.
T Consensus        84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl  163 (944)
T PRK14949         84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (944)
T ss_pred             cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence            000000000000000122222222211    113567799999999  45666676666642 235566655544 4455


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      ..+......|++++|+. ++...++.+.+...+....   .+.+..|++.++|.|..+..+
T Consensus       164 ~TIlSRCq~f~fkpLs~-eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL  220 (944)
T PRK14949        164 VTVLSRCLQFNLKSLTQ-DEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL  220 (944)
T ss_pred             HHHHHhheEEeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence            44445568899999999 6677777775544332222   236677899999999866654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.88  E-value=2.8e-08  Score=88.83  Aligned_cols=137  Identities=20%  Similarity=0.244  Sum_probs=86.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc---------eEEEEe-----------cCC------c-------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP---------RIWVCT-----------MSG------Q-------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~---------~~~v~~-----------v~~------~-------  105 (398)
                      .-.+++|+|++|+|||||++.+...... ..  .|+.         ..++..           +.+      .       
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR  103 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence            4568999999999999999999765211 00  0110         111110           000      0       


Q ss_pred             ---ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          106 ---KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       106 ---~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                         .........+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+.
T Consensus       104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  183 (213)
T cd03235         104 RLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM  183 (213)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence               0012234556677776532 2233458999999999999999999999999999   4444444444443  12578


Q ss_pred             EEEEEeCChHHHHHhcCCCceEEc
Q 015891          177 RLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .||++||+...+..++  ++++.+
T Consensus       184 tvi~~sH~~~~~~~~~--d~i~~l  205 (213)
T cd03235         184 TILVVTHDLGLVLEYF--DRVLLL  205 (213)
T ss_pred             EEEEEeCCHHHHHHhc--CEEEEE
Confidence            8999999988776643  344444

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.88  E-value=5.5e-08  Score=81.01  Aligned_cols=130  Identities=19%  Similarity=0.306  Sum_probs=89.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC-----------------------CCccccceEEEE-----ecC----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-----------------------VKTQFVPRIWVC-----TMS----------  103 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-----------------------~~~~F~~~~~v~-----~v~----------  103 (398)
                      .-..++|+|++|+|||||...++.-.+                       .+..--..+|.+     ++.          
T Consensus        35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle  114 (228)
T COG4181          35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE  114 (228)
T ss_pred             CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence            345789999999999999988843110                       011100112221     111          


Q ss_pred             --C--cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHcCC
Q 015891          104 --G--QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVLPR  172 (398)
Q Consensus       104 --~--~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l~~  172 (398)
                        .  ..+.......++.++|+... ...+...+++++++..+.+.+...|-+++-|+++   |.   +..-.+...+..
T Consensus       115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr  194 (228)
T COG4181         115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR  194 (228)
T ss_pred             hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence              1  23455567888999988764 2334558999999999999999999999999998   33   222333334456


Q ss_pred             CCCCEEEEEeCChHHHHHh
Q 015891          173 GYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..|++.++.|||+.++..|
T Consensus       195 e~G~TlVlVTHD~~LA~Rc  213 (228)
T COG4181         195 ERGTTLVLVTHDPQLAARC  213 (228)
T ss_pred             hcCceEEEEeCCHHHHHhh
Confidence            6799999999999999987

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.87  E-value=6.7e-08  Score=93.47  Aligned_cols=195  Identities=16%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+..++.+...+..   ..-...+.++|+.|+||||+|+.+++...-...+..        .+...-....++..
T Consensus        16 ~~iiGq~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~--------~pc~~c~~c~~~~~   84 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS--------NPCRKCIICKEIEK   84 (363)
T ss_pred             hhccChHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCCCHHHHHHhc
Confidence            6789999999999998864   223457899999999999999999876211111100        00000000011111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCCH--HHHHHHHhHcC-CCCCCEEEEEeCCh-HHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFEDM--EVCKHLSKVLP-RGYGERLIITSRNE-KLT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~  188 (398)
                      .....-...........+..+. +...+     .++..++|+||++..  ...+.+...+. .....++|++|.+. .+.
T Consensus        85 ~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~  163 (363)
T PRK14961         85 GLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP  163 (363)
T ss_pred             CCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence            0000000000000011222222 11221     234569999999943  34455555554 23455667666553 444


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+.+....+++.|++. ++....+.+.+...+...++   +.+..|++.++|.|..+..
T Consensus       164 ~tI~SRc~~~~~~~l~~-~el~~~L~~~~~~~g~~i~~---~al~~ia~~s~G~~R~al~  219 (363)
T PRK14961        164 KTILSRCLQFKLKIISE-EKIFNFLKYILIKESIDTDE---YALKLIAYHAHGSMRDALN  219 (363)
T ss_pred             HHHHhhceEEeCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            44445567899999998 55666666644333322222   3667788889998876543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.86  E-value=3.5e-08  Score=93.17  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCc------ccH-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQ------KTA-----------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~------~~~-----------  108 (398)
                      .-.+++|.|++|+|||||++.+..-..-   ..+.++                +.++.+.      .+.           
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p---~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~  108 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTHP---DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF  108 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence            3468999999999999999999764111   011111                1111111      011           


Q ss_pred             -------HHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891          109 -------ESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG  175 (398)
Q Consensus       109 -------~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g  175 (398)
                             ......+++.+++..... .....+.+++++..+.+++..++-+++||++.   |......+...+.  ...|
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g  188 (306)
T PRK13537        109 GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG  188 (306)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence                   122345566666654222 22348899999999999999999999999999   4444444433332  2347


Q ss_pred             CEEEEEeCChHHHHHhcCC
Q 015891          176 ERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~~~~  194 (398)
                      .+||+|||+.+.+..+++.
T Consensus       189 ~till~sH~l~e~~~~~d~  207 (306)
T PRK13537        189 KTILLTTHFMEEAERLCDR  207 (306)
T ss_pred             CEEEEECCCHHHHHHhCCE
Confidence            8999999999877765443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.86  E-value=2.6e-08  Score=99.68  Aligned_cols=139  Identities=18%  Similarity=0.213  Sum_probs=96.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC-CCccc--cceEEEEecCCc-----------------c-c-HHHHHHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQF--VPRIWVCTMSGQ-----------------K-T-AESIVKRILKR  118 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F--~~~~~v~~v~~~-----------------~-~-~~~~~~~il~~  118 (398)
                      ..-..|+|+|++|+|||||.+.+..... .....  ...+-+.++.+.                 . . ....++..+..
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~  425 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR  425 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence            3456799999999999999999965411 11111  111112111111                 1 1 14567778888


Q ss_pred             cCCCCCCCC--CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          119 LGVDDGTTN--SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       119 l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      +++......  ....+++++.+..+.+.+..++-+||||+++   |.+..+.|...+..- .+.||++|||+.+...++ 
T Consensus       426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gtvl~VSHDr~Fl~~va-  503 (530)
T COG0488         426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGTVLLVSHDRYFLDRVA-  503 (530)
T ss_pred             cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhc-
Confidence            888765432  2238999999999999999999999999999   557777777777533 456999999999998863 


Q ss_pred             CCceEEcCC
Q 015891          194 EENLHQLQP  202 (398)
Q Consensus       194 ~~~~~~l~~  202 (398)
                       .+++.+.+
T Consensus       504 -~~i~~~~~  511 (530)
T COG0488         504 -TRIWLVED  511 (530)
T ss_pred             -ceEEEEcC
Confidence             56777765

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.86  E-value=5.2e-08  Score=87.31  Aligned_cols=137  Identities=17%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-----------------ceEEEEec---CCccc-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-----------------PRIWVCTM---SGQKT-----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-----------------~~~~v~~v---~~~~~-----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+                 ...++..-   ....+           
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  107 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI  107 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence            4568999999999999999999764210 00  010                 01111100   00000           


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                             ......++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  187 (216)
T TIGR00960       108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR  187 (216)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence                   11233456677777542 2233458999999999999999999999999999   4444444444433  234


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      +..||++||+.+....++  ++++.+
T Consensus       188 ~~tii~vsH~~~~~~~~~--d~i~~l  211 (216)
T TIGR00960       188 GTTVLVATHDINLVETYR--HRTLTL  211 (216)
T ss_pred             CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence            788999999988776543  344444

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.86  E-value=4.1e-08  Score=84.77  Aligned_cols=117  Identities=13%  Similarity=0.153  Sum_probs=77.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      .-.+++|.|++|+|||||++.+..-  . ....+.+++....               ++....   ....+.+++++..+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl--~-~p~~G~i~~~g~~---------------i~~~~q---~~~LSgGq~qrv~l   82 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQ--L-IPNGDNDEWDGIT---------------PVYKPQ---YIDLSGGELQRVAI   82 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC--C-CCCCcEEEECCEE---------------EEEEcc---cCCCCHHHHHHHHH
Confidence            4568999999999999999999875  2 2223333332100               000000   00158899999999


Q ss_pred             HHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC-CCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          142 QQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY-GERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~-gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      .+.+..++-+++||++.   |....+.+...+.  ... +..||++||+......++  ++++.+.
T Consensus        83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~--d~i~~l~  146 (177)
T cd03222          83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS--DRIHVFE  146 (177)
T ss_pred             HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC--CEEEEEc
Confidence            99999999999999998   4444444444432  122 478999999998777643  3455554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.85  E-value=9.9e-08  Score=86.02  Aligned_cols=89  Identities=15%  Similarity=0.238  Sum_probs=62.4

Q ss_pred             HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...+++.+++...  .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       129 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~  208 (224)
T TIGR02324       129 ARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD  208 (224)
T ss_pred             HHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3456677776542  2334458999999999999999999999999998   4444444444443  2347899999999


Q ss_pred             hHHHHHhcCCCceEEcCC
Q 015891          185 EKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l~~  202 (398)
                      ...+..++  ++++.+.|
T Consensus       209 ~~~~~~~~--d~i~~~~~  224 (224)
T TIGR02324       209 EEVRELVA--DRVMDVTP  224 (224)
T ss_pred             HHHHHHhc--ceeEecCC
Confidence            88776543  45666543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.85  E-value=3.7e-08  Score=87.86  Aligned_cols=130  Identities=19%  Similarity=0.186  Sum_probs=82.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc----------ceEEEEe---cCCccc------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV----------PRIWVCT---MSGQKT------------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~----------~~~~v~~---v~~~~~------------------  107 (398)
                      .-.+++|+|++|+|||||++.+...... ...  ++          .+.++..   +....+                  
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  104 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE  104 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHH
Confidence            4568999999999999999999865211 000  10          0111110   000001                  


Q ss_pred             HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEE
Q 015891          108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIIT  181 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiT  181 (398)
                      ......++++.+++.... ......+.+++++..+.+.+..++-++++|++.   |....+.+...+.  ...+..||++
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~  184 (210)
T cd03269         105 ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS  184 (210)
T ss_pred             HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            112234566667765321 223347899999999999999999999999999   4444444444443  2347899999


Q ss_pred             eCChHHHHHh
Q 015891          182 SRNEKLTTEM  191 (398)
Q Consensus       182 TR~~~v~~~~  191 (398)
                      ||+...+..+
T Consensus       185 sH~~~~~~~~  194 (210)
T cd03269         185 THQMELVEEL  194 (210)
T ss_pred             CCCHHHHHHh
Confidence            9998877654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.85  E-value=3.7e-08  Score=92.94  Aligned_cols=132  Identities=14%  Similarity=0.150  Sum_probs=84.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc----------eEEEEecCCc------ccH--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP----------RIWVCTMSGQ------KTA--------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~----------~~~v~~v~~~------~~~--------------  108 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .++.          ...+.++.+.      .+.              
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~   97 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP   97 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence            45689999999999999999997642110 0  0100          0001111111      011              


Q ss_pred             ----HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891          109 ----ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL  178 (398)
Q Consensus       109 ----~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I  178 (398)
                          ......+++.+++.... ......+.+++++..+.+++..++-+|+||++.   |....+.+...+.  ...|..|
T Consensus        98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tv  177 (302)
T TIGR01188        98 KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI  177 (302)
T ss_pred             HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence                12244567777775432 223348899999999999999999999999999   4444444444432  2347899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |+|||+.+.+..+++
T Consensus       178 i~~sH~~~~~~~~~d  192 (302)
T TIGR01188       178 LLTTHYMEEADKLCD  192 (302)
T ss_pred             EEECCCHHHHHHhCC
Confidence            999999987776544

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.84  E-value=6.3e-08  Score=86.05  Aligned_cols=137  Identities=14%  Similarity=0.201  Sum_probs=86.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce--------EEEEecCCcc-------c--------------HH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR--------IWVCTMSGQK-------T--------------AE  109 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~--------~~v~~v~~~~-------~--------------~~  109 (398)
                      .-.+++|.|++|+|||||++.++.-... ..  .|+..        .-+.++.+..       +              ..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~  104 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN  104 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence            4568999999999999999999764210 00  01100        0011111110       0              01


Q ss_pred             HHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          110 SIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ....++++.+++.... ......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH  184 (205)
T cd03226         105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH  184 (205)
T ss_pred             HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            2345667777775422 223348899999999999999999999999999   4554455544443  234778999999


Q ss_pred             ChHHHHHhcCCCceEEc
Q 015891          184 NEKLTTEMVGEENLHQL  200 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l  200 (398)
                      +...+..++  ++++.+
T Consensus       185 ~~~~~~~~~--d~i~~l  199 (205)
T cd03226         185 DYEFLAKVC--DRVLLL  199 (205)
T ss_pred             CHHHHHHhC--CEEEEE
Confidence            988776543  344444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.84  E-value=1e-08  Score=95.91  Aligned_cols=130  Identities=19%  Similarity=0.247  Sum_probs=87.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCc--------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQ--------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~--------------------  105 (398)
                      .-.++++.|++|+|||||.+.+..-.  .. ..+.+.                +.++.+.                    
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~--~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~  106 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLL--KP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY  106 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCc--CC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence            45799999999999999999997652  11 111111                1111111                    


Q ss_pred             --c--cHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891          106 --K--TAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG  175 (398)
Q Consensus       106 --~--~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g  175 (398)
                        .  ...+....+++.+++..... .....+.+++++..+...|..++-++|||++.   |+.....+...+.  ...|
T Consensus       107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g  186 (293)
T COG1131         107 GLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG  186 (293)
T ss_pred             CCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence              0  11345667888888886322 22347899999999999999999999999999   5544444444443  2233


Q ss_pred             -CEEEEEeCChHHHHHhcCC
Q 015891          176 -ERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       176 -s~IIiTTR~~~v~~~~~~~  194 (398)
                       ..||+|||....+..+++.
T Consensus       187 ~~tvlissH~l~e~~~~~d~  206 (293)
T COG1131         187 GVTILLSTHILEEAEELCDR  206 (293)
T ss_pred             CcEEEEeCCcHHHHHHhCCE
Confidence             7999999998877776443

>PLN03025 replication factor C subunit; Provisional

Probab=98.84  E-value=4.8e-08  Score=92.89  Aligned_cols=182  Identities=16%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccce-EEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR-IWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~~v~~v~~~~~~~~~~~~il  116 (398)
                      ++++|.+..++.|..++..    +....+.++|++|+||||+|+.+++... ...|... +-+. .+..... ..+++++
T Consensus        13 ~~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln-~sd~~~~-~~vr~~i   85 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARD----GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELN-ASDDRGI-DVVRNKI   85 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeec-ccccccH-HHHHHHH
Confidence            5688999989999888754    3445578999999999999999987621 1122211 1111 1111111 1222222


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhc
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMV  192 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~  192 (398)
                      ..+......                  ...++..++|+||++.  ....+.|...+. ....+++|+++... .+...+.
T Consensus        86 ~~~~~~~~~------------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~  147 (319)
T PLN03025         86 KMFAQKKVT------------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ  147 (319)
T ss_pred             HHHHhcccc------------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence            211100000                  0013467999999994  344455555554 23456777766543 3333333


Q ss_pred             CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          193 GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       193 ~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .....+++++++. ++....+.+.+...+...++   +....|++.++|-...+..
T Consensus       148 SRc~~i~f~~l~~-~~l~~~L~~i~~~egi~i~~---~~l~~i~~~~~gDlR~aln  199 (319)
T PLN03025        148 SRCAIVRFSRLSD-QEILGRLMKVVEAEKVPYVP---EGLEAIIFTADGDMRQALN  199 (319)
T ss_pred             HhhhcccCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            3456899999998 66777777655444443333   3667788888887765543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.84  E-value=4.6e-08  Score=98.48  Aligned_cols=202  Identities=14%  Similarity=0.131  Sum_probs=112.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+..++.|.+++..   ..-...+.++|+.|+||||+|+.+.+...-... +..--+  ....+..-.....|..
T Consensus        16 ddVIGQe~vv~~L~~al~~---gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~--~~~PCG~C~sC~~I~a   89 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQ---QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI--TAQPCGQCRACTEIDA   89 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC--CCCCCcccHHHHHHHc
Confidence            5789999999999999964   233567799999999999999999876211000 000000  0000000000111110


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeC-ChHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSR-NEKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR-~~~v~~  189 (398)
                      .-..+.......+..+.++.+..+....    .++..++|+|+++  +....+.|...+.. ..++++|++|. ...+..
T Consensus        90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp  169 (700)
T PRK12323         90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV  169 (700)
T ss_pred             CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence            0000000000001123444444333322    3456799999999  44566666666642 23556555554 455555


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      .+......|.+.+++. ++....+.+.....+...++   +.+..|++.++|.+.....+
T Consensus       170 TIrSRCq~f~f~~ls~-eei~~~L~~Il~~Egi~~d~---eAL~~IA~~A~Gs~RdALsL  225 (700)
T PRK12323        170 TVLSRCLQFNLKQMPP-GHIVSHLDAILGEEGIAHEV---NALRLLAQAAQGSMRDALSL  225 (700)
T ss_pred             HHHHHHHhcccCCCCh-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence            5555567899999998 66766666655433332222   25677889999999765543

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.84  E-value=5.7e-08  Score=95.27  Aligned_cols=194  Identities=15%  Similarity=0.088  Sum_probs=109.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCC-eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQ-FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~-~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +++||.+..+..|..++..    ++ ...+.++|+.|+||||+|+.+++.  +........-.  ........    .+.
T Consensus        18 ~dvVGQe~iv~~L~~~i~~----~ri~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~~~p--Cg~C~sC~----~i~   85 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKS----GKIGHAYIFFGPRGVGKTTIARILAKR--LNCENPIGNEP--CNECTSCL----EIT   85 (484)
T ss_pred             HHHhChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHh--cCcccccCccc--cCCCcHHH----HHH
Confidence            6789999999999999865    33 346899999999999999999887  22211000000  01111111    111


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEE-EEeCChHHH
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLI-ITSRNEKLT  188 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~II-iTTR~~~v~  188 (398)
                      ................+.+..+......    ..++..++|+|+++  +.+..+.|...+... ....+| .||....+.
T Consensus        86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~  165 (484)
T PRK14956         86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP  165 (484)
T ss_pred             ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence            1111000000000112233322222111    23456799999999  456666666666432 244444 444445555


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      ..+......|.+.+++. ++....+.+.....+....   .+.+..|++.++|-+....
T Consensus       166 ~TI~SRCq~~~f~~ls~-~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL  220 (484)
T PRK14956        166 ETILSRCQDFIFKKVPL-SVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDML  220 (484)
T ss_pred             HHHHhhhheeeecCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHH
Confidence            55555567899999998 6677777765544333222   2367788899999886543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.84  E-value=2e-08  Score=85.91  Aligned_cols=118  Identities=17%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC-cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      .-.+++|.|++|+|||||++.++..   .....+.+++....- ..+....   ....++.-      ...+.++.++..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~------~qLS~G~~qrl~   92 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDA---RRAGIAMV------YQLSVGERQMVE   92 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHH---HhcCeEEE------EecCHHHHHHHH
Confidence            4568999999999999999999886   233445555541110 1111111   11111111      116889999999


Q ss_pred             HHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891          141 LQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +.+.+..++-++++|++.   |....+.+...+.  ...+..||++||+...+..+
T Consensus        93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  148 (163)
T cd03216          93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI  148 (163)
T ss_pred             HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            999999999999999998   4444444444443  23478999999998866554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.84  E-value=1.5e-08  Score=83.08  Aligned_cols=114  Identities=24%  Similarity=0.362  Sum_probs=78.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-----ccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-----FVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF  136 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~  136 (398)
                      +.+.+.|+|++|+|||++++.+.+.  ....     -..++|+. +....+...+...++..++.....     ......
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~   74 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVN-CPSSRTPRDFAQEILEALGLPLKS-----RQTSDE   74 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEE-HHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEE-eCCCCCHHHHHHHHHHHhCccccc-----cCCHHH
Confidence            4678999999999999999999886  3221     23456777 777678999999999999877543     134566


Q ss_pred             HHHHHHHHHhCCCc-EEEecCCCCH---HHHHHHHhHcCCCCCCEEEEEeCC
Q 015891          137 LDYVLQQQLIGKRY-LIVLDDFEDM---EVCKHLSKVLPRGYGERLIITSRN  184 (398)
Q Consensus       137 ~~~~l~~~l~~k~~-LlVLDdv~~~---~~~~~l~~~l~~~~gs~IIiTTR~  184 (398)
                      ....+.+.+...+. +||+||++..   ..++.+..... ..+.++|++.+.
T Consensus        75 l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~  125 (131)
T PF13401_consen   75 LRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred             HHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence            66777788876655 9999999865   44445544443 667788887765

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.83  E-value=6.9e-08  Score=86.34  Aligned_cols=130  Identities=20%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc---------eEEEEecCCcc------c----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP---------RIWVCTMSGQK------T----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~---------~~~v~~v~~~~------~----------------  107 (398)
                      .-.+++|+|++|+|||||++.+..-... ..  .|+.         ...+.++.+..      +                
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~  104 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK  104 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence            4568999999999999999999764110 00  0110         00011111110      0                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ......+++..+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.   ...|..|
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti  184 (213)
T cd03259         105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT  184 (213)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence              01223456677777542 2223458899999999999999999999999999   4444444444443   1237889


Q ss_pred             EEEeCChHHHHHh
Q 015891          179 IITSRNEKLTTEM  191 (398)
Q Consensus       179 IiTTR~~~v~~~~  191 (398)
                      |++||+......+
T Consensus       185 i~~sH~~~~~~~~  197 (213)
T cd03259         185 IYVTHDQEEALAL  197 (213)
T ss_pred             EEEecCHHHHHHh
Confidence            9999998876654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.83  E-value=7.9e-08  Score=97.04  Aligned_cols=196  Identities=15%  Similarity=0.140  Sum_probs=111.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+...+.|..++..   ..-...+.++|+.|+||||+|+.+++...-......        ..+..-.....+..
T Consensus        15 ddVIGQe~vv~~L~~aI~~---grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~--------~pCg~C~sC~~I~~   83 (702)
T PRK14960         15 NELVGQNHVSRALSSALER---GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS--------TPCEVCATCKAVNE   83 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC--------CCCccCHHHHHHhc
Confidence            6789999999999999964   223568899999999999999999876211111100        00000000000000


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~  189 (398)
                      .-...-......+....+..+..+...    ..++..++|+|+++  +....+.|...+.. ..+.++|++|.+. .+..
T Consensus        84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~  163 (702)
T PRK14960         84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI  163 (702)
T ss_pred             CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence            000000000000012233333322221    13456799999999  44566666666653 3456777777664 3333


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+......+++.+++. ++....+.+.+...+....+   +.+..|++.++|-+..+..
T Consensus       164 TIlSRCq~feFkpLs~-eEI~k~L~~Il~kEgI~id~---eAL~~IA~~S~GdLRdALn  218 (702)
T PRK14960        164 TVISRCLQFTLRPLAV-DEITKHLGAILEKEQIAADQ---DAIWQIAESAQGSLRDALS  218 (702)
T ss_pred             HHHHhhheeeccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            3335567899999999 66777777766544433333   3667788889988866543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.83  E-value=2e-08  Score=91.42  Aligned_cols=153  Identities=15%  Similarity=0.229  Sum_probs=103.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC------------------------------CCccccceEEEEecC-------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD------------------------------VKTQFVPRIWVCTMS-------  103 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~------------------------------~~~~F~~~~~v~~v~-------  103 (398)
                      ..-.+.+|+|.+|.|||||.+.+-.=++                              +..+|.. +|-.+|.       
T Consensus        30 ~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL-LssrTV~~NvA~PL  108 (339)
T COG1135          30 PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL-LSSRTVFENVAFPL  108 (339)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc-cccchHHhhhhhhH
Confidence            3456899999999999999999832100                              0111211 0000011       


Q ss_pred             -----CcccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHc---C
Q 015891          104 -----GQKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVL---P  171 (398)
Q Consensus       104 -----~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l---~  171 (398)
                           ......+-..++++.+|+.+.. ..+...++++.++..++++|...|-+|+.|+++   |++.-+.+...+   .
T Consensus       109 eiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In  188 (339)
T COG1135         109 ELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN  188 (339)
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHH
Confidence                 1123445667888888988643 345569999999999999999999999999999   443333333333   3


Q ss_pred             CCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          172 RGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      ..-|-+|+++||..+|...+|+...++.=+.+-+....+.+|.
T Consensus       189 ~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         189 RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence            4569999999999999999877666666555555455566664

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.83  E-value=7.5e-08  Score=85.97  Aligned_cols=137  Identities=20%  Similarity=0.173  Sum_probs=85.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc--------------ceEEEEecC----Cccc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV--------------PRIWVCTMS----GQKT-------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~--------------~~~~v~~v~----~~~~-------------  107 (398)
                      .-.+++|+|++|+|||||++.++..... ..  .|+              ...++..-.    ...+             
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~  105 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG  105 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence            4578999999999999999999764211 00  010              011111000    0000             


Q ss_pred             -----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          108 -----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       108 -----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                           .......++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+.
T Consensus       106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~  185 (211)
T cd03225         106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK  185 (211)
T ss_pred             CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence                 01123446666776532 2233458999999999999999999999999999   4444444444443  12378


Q ss_pred             EEEEEeCChHHHHHhcCCCceEEc
Q 015891          177 RLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .||++||+...+..++  ++++.+
T Consensus       186 tvi~~sH~~~~~~~~~--d~i~~l  207 (211)
T cd03225         186 TIIIVTHDLDLLLELA--DRVIVL  207 (211)
T ss_pred             EEEEEeCCHHHHHHhC--CEEEEE
Confidence            8999999988776643  344444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.82  E-value=5.9e-08  Score=87.48  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe-----------cCCcc---------------c---HHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT-----------MSGQK---------------T---AESIV  112 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~-----------v~~~~---------------~---~~~~~  112 (398)
                      .-.+++|.|++|+|||||++.+..-..   ...+.+++..           +....               .   .....
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  123 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI  123 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence            457899999999999999999987521   1111111110           00000               0   11123


Q ss_pred             HHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891          113 KRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK  186 (398)
Q Consensus       113 ~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~  186 (398)
                      ..+++.+++.... ......+.+++++..+.+.+..++-++|||++.   |....+.+...+.  ...+..||++||+.+
T Consensus       124 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~  203 (224)
T cd03220         124 DEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS  203 (224)
T ss_pred             HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4455666665422 223348899999999999999999999999999   4443333333332  123678999999988


Q ss_pred             HHHHh
Q 015891          187 LTTEM  191 (398)
Q Consensus       187 v~~~~  191 (398)
                      .+..+
T Consensus       204 ~~~~~  208 (224)
T cd03220         204 SIKRL  208 (224)
T ss_pred             HHHHh
Confidence            77664

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK04195 replication factor C large subunit; Provisional

Probab=98.82  E-value=4.5e-08  Score=98.28  Aligned_cols=179  Identities=18%  Similarity=0.285  Sum_probs=107.8

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+..++.|..|+.........+.+.|+|++|+||||+|+.+++.  +.  |. .+-+. .+.... ...+..++.
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ieln-asd~r~-~~~i~~~i~   86 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELN-ASDQRT-ADVIERVAG   86 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEc-cccccc-HHHHHHHHH
Confidence            5689999999999999975322223788999999999999999999998  32  22 12222 332221 222333332


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEEEEeCChH-HHH-
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLIITSRNEK-LTT-  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~IIiTTR~~~-v~~-  189 (398)
                      ......                   ..+..++.+||+||++..      .....+...+.. .++.||+|+.+.. ... 
T Consensus        87 ~~~~~~-------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~~~~iIli~n~~~~~~~k  146 (482)
T PRK04195         87 EAATSG-------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-AKQPIILTANDPYDPSLR  146 (482)
T ss_pred             HhhccC-------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-CCCCEEEeccCccccchh
Confidence            211100                   001135789999999843      234455545543 3455666665432 211 


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......+++.+++. +.....+.+.+...+...++   +....|++.++|-...++
T Consensus       147 ~Lrsr~~~I~f~~~~~-~~i~~~L~~i~~~egi~i~~---eaL~~Ia~~s~GDlR~ai  200 (482)
T PRK04195        147 ELRNACLMIEFKRLST-RSIVPVLKRICRKEGIECDD---EALKEIAERSGGDLRSAI  200 (482)
T ss_pred             hHhccceEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            2334467889999998 55666666655444433333   367788888888776554

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.82  E-value=8e-08  Score=82.38  Aligned_cols=129  Identities=15%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD  138 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~  138 (398)
                      .-.+++|.|++|+|||||++.+....... ..  ++....+.++.+......  ..+.+.+...    .....+.+++++
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~----~~~~LS~G~~~r   99 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYP----WDDVLSGGEQQR   99 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhcc----CCCCCCHHHHHH
Confidence            45689999999999999999998762211 11  111111222333322110  1222222111    123478899999


Q ss_pred             HHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          139 YVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+.+.+..++-++++|++.   |....+.+...+... +..||++||+..... .  .++++.+
T Consensus       100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~~~~~~-~--~d~i~~l  160 (166)
T cd03223         100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHRPSLWK-F--HDRVLDL  160 (166)
T ss_pred             HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCChhHHh-h--CCEEEEE
Confidence            99999999999999999998   444444444444322 578999999987654 2  3455554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=8.5e-08  Score=88.18  Aligned_cols=137  Identities=18%  Similarity=0.194  Sum_probs=86.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce------EEEEecCCc------ccH------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR------IWVCTMSGQ------KTA------------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~------~~v~~v~~~------~~~------------------  108 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+..      ..+.++.+.      .+.                  
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  105 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR  105 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH
Confidence            4568999999999999999999765211 00  01000      001111111      000                  


Q ss_pred             HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      .....++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++
T Consensus       106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv  185 (255)
T PRK11248        106 LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI  185 (255)
T ss_pred             HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            1224556777776542 2233458999999999999999999999999999   4544444444443   1247889999


Q ss_pred             eCChHHHHHhcCCCceEEc
Q 015891          182 SRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       182 TR~~~v~~~~~~~~~~~~l  200 (398)
                      ||+.+.+..++  ++++.+
T Consensus       186 sH~~~~~~~~~--d~i~~l  202 (255)
T PRK11248        186 THDIEEAVFMA--TELVLL  202 (255)
T ss_pred             eCCHHHHHHhC--CEEEEE
Confidence            99998776653  344544

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.81  E-value=8.9e-09  Score=89.64  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .||||++++++|...|. .......+.+.|+|++|+|||+|++.++..
T Consensus         1 ~fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             --TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999996 335667899999999999999999999887

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.81  E-value=5.7e-08  Score=87.32  Aligned_cols=137  Identities=13%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce----------EEEEecCCc------cc---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR----------IWVCTMSGQ------KT---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~----------~~v~~v~~~------~~---------------  107 (398)
                      .-.+++|.|++|+|||||++.++..... ..  .|+..          .-+.++.+.      .+               
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  104 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP  104 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence            4578999999999999999999764211 00  01000          001111111      01               


Q ss_pred             ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891          108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~  177 (398)
                         .......+++.+++... .......+.+++++..+.+.+..++-++++|++.   |....+.+...+.   ...+..
T Consensus       105 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  184 (220)
T cd03265         105 GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT  184 (220)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCE
Confidence               11223456666776542 2223348899999999999999999999999999   4444444444443   223778


Q ss_pred             EEEEeCChHHHHHhcCCCceEEc
Q 015891          178 LIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       178 IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ||++||+...+..++  ++++.+
T Consensus       185 vi~~tH~~~~~~~~~--d~i~~l  205 (220)
T cd03265         185 ILLTTHYMEEAEQLC--DRVAII  205 (220)
T ss_pred             EEEEeCCHHHHHHhC--CEEEEE
Confidence            999999998776643  344444

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.80  E-value=5.7e-08  Score=97.20  Aligned_cols=193  Identities=18%  Similarity=0.144  Sum_probs=109.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+..++.|..++..   ..-...+.++|++|+||||+|+.+++...-...+...+|.+ .+    .    ..+..
T Consensus        14 ~dvvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C-~s----c----~~i~~   81 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC-ES----C----LAVRR   81 (504)
T ss_pred             HHhcChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC-hh----h----HHHhc
Confidence            5689999999999998864   22345679999999999999999987632112222234433 11    0    00000


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRN-EKLT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~  188 (398)
                      .................+..+. +...+     ..++.++|+||++.  ....+.|...+.. ...+.+|++|.. ..+.
T Consensus        82 ~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~  160 (504)
T PRK14963         82 GAHPDVLEIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP  160 (504)
T ss_pred             CCCCceEEecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence            0000000000000112222222 22222     24567999999983  3555566656543 334555666654 3333


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      ..+......+++.+++. ++....+.+.+...+....   .+.+..|++.++|.+..+.
T Consensus       161 ~~I~SRc~~~~f~~ls~-~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al  215 (504)
T PRK14963        161 PTILSRTQHFRFRRLTE-EEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE  215 (504)
T ss_pred             hHHhcceEEEEecCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence            33434567899999999 6677777775544333322   2367778889999887664

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.80  E-value=4.9e-08  Score=87.62  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=81.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc----------eEEEEecCCc------cc---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP----------RIWVCTMSGQ------KT---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~----------~~~v~~v~~~------~~---------------  107 (398)
                      .-.+++|.|++|+|||||++.+..-... ..  .|+.          .-.+.++.+.      .+               
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  109 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK  109 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence            4568999999999999999999764211 00  0100          0001111111      01               


Q ss_pred             ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891          108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL  178 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I  178 (398)
                         ......++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..|
T Consensus       110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  189 (218)
T cd03266         110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI  189 (218)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence               11233456667776532 2223347899999999999999999999999999   4444444444433  2347899


Q ss_pred             EEEeCChHHHHHh
Q 015891          179 IITSRNEKLTTEM  191 (398)
Q Consensus       179 IiTTR~~~v~~~~  191 (398)
                      |++||+...+..+
T Consensus       190 i~~tH~~~~~~~~  202 (218)
T cd03266         190 LFSTHIMQEVERL  202 (218)
T ss_pred             EEEeCCHHHHHHh
Confidence            9999998876654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.80  E-value=4.4e-08  Score=86.09  Aligned_cols=171  Identities=18%  Similarity=0.197  Sum_probs=93.9

Q ss_pred             CCCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      -++|||.+.-++.+.-++... ...+....+.+|||+|+||||||..+++.  ....|.   +.+ .. .  .       
T Consensus        23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~s-g~-~--i-------   86 (233)
T PF05496_consen   23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITS-GP-A--I-------   86 (233)
T ss_dssp             CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEE-CC-C----------
T ss_pred             HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---ecc-ch-h--h-------
Confidence            478999999999887766531 13456778999999999999999999998  555553   222 11 0  0       


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC---------CCCC--------
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR---------GYGE--------  176 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~---------~~gs--------  176 (398)
                                      .....+...+.. + .++.+|++|+++  +..+.+.|...+-.         +++.        
T Consensus        87 ----------------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~  148 (233)
T PF05496_consen   87 ----------------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP  148 (233)
T ss_dssp             -----------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred             ----------------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence                            001111111111 1 346689999999  44555555544321         1111        


Q ss_pred             --E-EEEEeCChHHHHHhcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          177 --R-LIITSRNEKLTTEMVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       177 --~-IIiTTR~~~v~~~~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                        + |=.|||...+...+.+. ..+.++..-+. ++...+..+....-+...+.   +.+.+|+++|.|.|.-
T Consensus       149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~-~el~~Iv~r~a~~l~i~i~~---~~~~~Ia~rsrGtPRi  217 (233)
T PF05496_consen  149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSE-EELAKIVKRSARILNIEIDE---DAAEEIARRSRGTPRI  217 (233)
T ss_dssp             --EEEEEESSGCCTSHCCCTTSSEEEE----TH-HHHHHHHHHCCHCTT-EE-H---HHHHHHHHCTTTSHHH
T ss_pred             CceEeeeeccccccchhHHhhcceecchhcCCH-HHHHHHHHHHHHHhCCCcCH---HHHHHHHHhcCCChHH
Confidence              2 33577765444444333 33457888888 66777777655444444333   4788899999999974

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.80  E-value=9.2e-08  Score=85.99  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=82.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc---------ceEEEEec---CCcccH------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV---------PRIWVCTM---SGQKTA------------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~---------~~~~v~~v---~~~~~~------------------  108 (398)
                      .-.+++|.|++|+|||||++.++.-... ...  |+         ...++..-   ....+.                  
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  108 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA  108 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence            3468999999999999999999765211 110  10         11111100   000011                  


Q ss_pred             HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      ......+++.+++... .......+.+++++..+.+++..++-+++||++.   |....+.+...+.   ...+..||++
T Consensus       109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~  188 (220)
T cd03293         109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV  188 (220)
T ss_pred             HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            1223456667777542 2233458999999999999999999999999999   4444444444443   1236789999


Q ss_pred             eCChHHHHHh
Q 015891          182 SRNEKLTTEM  191 (398)
Q Consensus       182 TR~~~v~~~~  191 (398)
                      ||+...+..+
T Consensus       189 sH~~~~~~~~  198 (220)
T cd03293         189 THDIDEAVFL  198 (220)
T ss_pred             ecCHHHHHHh
Confidence            9998866554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.80  E-value=1.3e-07  Score=85.99  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=82.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc--------------eEEEEecCCc------ccH----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP--------------RIWVCTMSGQ------KTA----------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~--------------~~~v~~v~~~------~~~----------  108 (398)
                      .-.+++|+|++|+|||||++.+..-... ...  |+.              ...+.++.+.      .+.          
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~  104 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE  104 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence            4568999999999999999999764210 000  000              0011111111      010          


Q ss_pred             ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                               ......+++.+++... .......+++++++..+.+.+..++-+++||++.   |....+.+...+.  ..
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  184 (235)
T cd03261         105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK  184 (235)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence                     1123445666776542 2223348999999999999999999999999999   4444444444443  12


Q ss_pred             -CCCEEEEEeCChHHHHHhc
Q 015891          174 -YGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       174 -~gs~IIiTTR~~~v~~~~~  192 (398)
                       .+..||++||+.+.+..++
T Consensus       185 ~~~~tvi~vsH~~~~~~~~~  204 (235)
T cd03261         185 ELGLTSIMVTHDLDTAFAIA  204 (235)
T ss_pred             hcCcEEEEEecCHHHHHHhc
Confidence             3788999999998776543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13173 AAA_14: AAA domain

Probab=98.80  E-value=3.2e-08  Score=80.97  Aligned_cols=119  Identities=19%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~  142 (398)
                      .+++.|.|+.|+|||||+++++++  .. .....++++ +...........+                      ....+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~-~~~~~~~~~~~~~----------------------~~~~~~   55 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYIN-FDDPRDRRLADPD----------------------LLEYFL   55 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeec-cCCHHHHHHhhhh----------------------hHHHHH
Confidence            468999999999999999999987  22 223455655 3322211000000                      112233


Q ss_pred             HHHhCCCcEEEecCCCCH-HHHHHHHhHcCCCCCCEEEEEeCChHHHHH-----hcCCCceEEcCCCCChh
Q 015891          143 QQLIGKRYLIVLDDFEDM-EVCKHLSKVLPRGYGERLIITSRNEKLTTE-----MVGEENLHQLQPLSDQE  207 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~~~-~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~-----~~~~~~~~~l~~L~~~e  207 (398)
                      +....++.+|+||++... +|.+.+.......+..+|++|+........     +.+....+++.||+-.|
T Consensus        56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E  126 (128)
T PF13173_consen   56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE  126 (128)
T ss_pred             HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence            333347889999999965 555566555555567899999998766533     23445678999999743

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.80  E-value=8.8e-08  Score=80.06  Aligned_cols=113  Identities=21%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      .-.+++|.|++|+|||||++.+....   ....+.+++...              ..++.-.      ..+.++.++..+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~--------------~~i~~~~------~lS~G~~~rv~l   81 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST--------------VKIGYFE------QLSGGEKMRLAL   81 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe--------------EEEEEEc------cCCHHHHHHHHH
Confidence            45789999999999999999998862   223444444310              0000000      047888999999


Q ss_pred             HHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          142 QQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .+.+..++-++++|++.   |....+.+...+... +..||++||+.+.+..++  ++++.+
T Consensus        82 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~~~~--d~v~~l  140 (144)
T cd03221          82 AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLDQVA--TKIIEL  140 (144)
T ss_pred             HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhC--CEEEEE
Confidence            99999999999999998   444444554444322 468999999988776542  344443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.79  E-value=2e-07  Score=88.49  Aligned_cols=178  Identities=15%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC----CCCccccceEEEEecC-CcccHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP----DVKTQFVPRIWVCTMS-GQKTAESIV  112 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~~v~~v~-~~~~~~~~~  112 (398)
                      ++++|-+...+.+...+..   ..-...+.++|+.|+||||+|+.+++..    ....+.+...|.. .. ......+ +
T Consensus         4 ~~i~g~~~~~~~l~~~~~~---~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~~~i~v~~-i   78 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIK---NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INKKSIGVDD-I   78 (313)
T ss_pred             hhccCcHHHHHHHHHHHHc---CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccCCCCCHHH-H
Confidence            4688999999999999864   2345678999999999999999998741    1122333323322 11 1111111 2


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCChH-HH
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNEK-LT  188 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~~-v~  188 (398)
                      +++...+...                     -..+++-++|+|+++  +....+.|...+.. .+++.+|++|.+.+ +.
T Consensus        79 r~~~~~~~~~---------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll  137 (313)
T PRK05564         79 RNIIEEVNKK---------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQIL  137 (313)
T ss_pred             HHHHHHHhcC---------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence            2333322211                     112456688888877  55667777777763 34778888887654 33


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      ..+......+++.+++. +....++.+.+....       .+.+..++..++|.|..+..+
T Consensus       138 ~TI~SRc~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~  190 (313)
T PRK05564        138 DTIKSRCQIYKLNRLSK-EEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF  190 (313)
T ss_pred             HHHHhhceeeeCCCcCH-HHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence            33445567899999998 556666665543211       124566778888888765544

>PRK08727 hypothetical protein; Validated

Probab=98.79  E-value=1.7e-07  Score=84.98  Aligned_cols=167  Identities=19%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             CCcccchhh-HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANE-ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~-~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      ++|++.... +..+..+...    .....+.|+|++|+|||+|+.++++.  .......+.|+. +..      ....+.
T Consensus        19 ~~f~~~~~n~~~~~~~~~~~----~~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~-~~~------~~~~~~   85 (233)
T PRK08727         19 DSYIAAPDGLLAQLQALAAG----QSSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLP-LQA------AAGRLR   85 (233)
T ss_pred             hhccCCcHHHHHHHHHHHhc----cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEe-HHH------hhhhHH
Confidence            556665543 3333333321    23356999999999999999999876  333333445555 211      000000


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh-----
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE-----  185 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~-----  185 (398)
                                            ..+ +.+ .+..+||+||++.    ..+...+...+.  ...+..||+||+..     
T Consensus        86 ----------------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~  141 (233)
T PRK08727         86 ----------------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLA  141 (233)
T ss_pred             ----------------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhh
Confidence                                  011 111 2346999999982    233334444443  23467799999853     


Q ss_pred             ----HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          186 ----KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       186 ----~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                          ++.+.+ .....+++++++. ++...++.+.+...+...++   +...-|++.+.|-...+
T Consensus       142 ~~~~dL~SRl-~~~~~~~l~~~~~-e~~~~iL~~~a~~~~l~l~~---e~~~~La~~~~rd~r~~  201 (233)
T PRK08727        142 LVLPDLRSRL-AQCIRIGLPVLDD-VARAAVLRERAQRRGLALDE---AAIDWLLTHGERELAGL  201 (233)
T ss_pred             hhhHHHHHHH-hcCceEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHH
Confidence                222222 2256899999998 67777777633222333222   35566777776655544

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.79  E-value=7e-08  Score=88.14  Aligned_cols=136  Identities=18%  Similarity=0.176  Sum_probs=85.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc------ccHHH--------------HHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ------KTAES--------------IVKRILKR  118 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~------~~~~~--------------~~~~il~~  118 (398)
                      .-.+++|+|++|+|||||++.+.....- ..  .++.. -+.++.+.      .+..+              ...+++..
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~  102 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP  102 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence            4568999999999999999999875211 11  11110 11111111      11111              12345666


Q ss_pred             cCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHh
Q 015891          119 LGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       119 l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +++... .......++++.++..+.+.|..++-+++||++.   |......+...+.   ...+..||++||+...+..+
T Consensus       103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~  182 (246)
T cd03237         103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL  182 (246)
T ss_pred             cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            666532 1223348899999999999999999999999999   4444444444443   22478999999998877765


Q ss_pred             cCCCceEEc
Q 015891          192 VGEENLHQL  200 (398)
Q Consensus       192 ~~~~~~~~l  200 (398)
                      +  ++++.+
T Consensus       183 ~--d~i~~l  189 (246)
T cd03237         183 A--DRLIVF  189 (246)
T ss_pred             C--CEEEEE
Confidence            3  344444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.78  E-value=7.8e-08  Score=84.39  Aligned_cols=122  Identities=16%  Similarity=0.145  Sum_probs=77.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc----------------ceEEEEecCCcc-------cH-------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV----------------PRIWVCTMSGQK-------TA-------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~----------------~~~~v~~v~~~~-------~~-------  108 (398)
                      .-.+++|.|++|+|||||++.+...... ..  .|+                .+.++   .+..       +.       
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~---~q~~~~~~~~~tv~~nl~~~   93 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLV---FQDPDDQLFAADVDQDVAFG   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEE---ecChhhccccccHHHHHHHH
Confidence            4568999999999999999999754211 00  000                01111   1110       00       


Q ss_pred             -----------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          109 -----------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       109 -----------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                                 ......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~  173 (190)
T TIGR01166        94 PLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL  173 (190)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                       1123455666666542 2223458899999999999999999999999999   4444444444443  


Q ss_pred             CCCCCEEEEEeCChH
Q 015891          172 RGYGERLIITSRNEK  186 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~  186 (398)
                      ...|..||++||+.+
T Consensus       174 ~~~~~tili~sH~~~  188 (190)
T TIGR01166       174 RAEGMTVVISTHDVD  188 (190)
T ss_pred             HHcCCEEEEEeeccc
Confidence            234789999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.78  E-value=8.9e-08  Score=91.52  Aligned_cols=134  Identities=16%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-------------ceEEEEe---cCCcccH-------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-------------PRIWVCT---MSGQKTA-------------  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-------------~~~~v~~---v~~~~~~-------------  108 (398)
                      ..-.+++|+|++|+|||||++.+..-..- ..  .+.             ...++..   +....+.             
T Consensus        65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~  144 (340)
T PRK13536         65 ASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM  144 (340)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC
Confidence            34579999999999999999999764210 00  000             0111110   0000011             


Q ss_pred             -----HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCE
Q 015891          109 -----ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGER  177 (398)
Q Consensus       109 -----~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~  177 (398)
                           ......++..+++.... ......+.+++++..+.+.+..++-+++||++.   |......+...+.  ...|..
T Consensus       145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~t  224 (340)
T PRK13536        145 STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT  224 (340)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence                 11233556666765422 223348999999999999999999999999999   4444444443332  234789


Q ss_pred             EEEEeCChHHHHHhcCC
Q 015891          178 LIITSRNEKLTTEMVGE  194 (398)
Q Consensus       178 IIiTTR~~~v~~~~~~~  194 (398)
                      ||+|||+.+.+..+++.
T Consensus       225 ilisSH~l~e~~~~~d~  241 (340)
T PRK13536        225 ILLTTHFMEEAERLCDR  241 (340)
T ss_pred             EEEECCCHHHHHHhCCE
Confidence            99999999887765443

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.78  E-value=1.3e-07  Score=86.97  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc---------eEEEEecC---Cccc------------HHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP---------RIWVCTMS---GQKT------------AESIVKR  114 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~---------~~~v~~v~---~~~~------------~~~~~~~  114 (398)
                      .-.+++|+|++|+|||||++.+..-... ...  |+.         ..|+..-.   ...+            .......
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~  116 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ  116 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence            4568999999999999999999765211 110  111         11221000   0001            1223456


Q ss_pred             HHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHH
Q 015891          115 ILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKL  187 (398)
Q Consensus       115 il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v  187 (398)
                      +++.+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.   ...+..||++||+...
T Consensus       117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~  196 (257)
T PRK11247        117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            6777777542 2223458999999999999999999999999999   4444444443332   2247889999999887


Q ss_pred             HHHh
Q 015891          188 TTEM  191 (398)
Q Consensus       188 ~~~~  191 (398)
                      +..+
T Consensus       197 ~~~~  200 (257)
T PRK11247        197 AVAM  200 (257)
T ss_pred             HHHh
Confidence            6654

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.78  E-value=7.9e-08  Score=86.39  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=82.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccce----------EEEEecCCc------cc---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPR----------IWVCTMSGQ------KT---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~----------~~v~~v~~~------~~---------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  |+..          ..+.++.+.      .+               
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  106 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP  106 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence            4568999999999999999999764211 000  1000          001111111      00               


Q ss_pred             ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEE
Q 015891          108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLI  179 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~II  179 (398)
                         ......++++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||
T Consensus       107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii  186 (220)
T cd03263         107 KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII  186 (220)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence               01223456666776532 2223347899999999999999999999999999   4444444444443 12347899


Q ss_pred             EEeCChHHHHHhc
Q 015891          180 ITSRNEKLTTEMV  192 (398)
Q Consensus       180 iTTR~~~v~~~~~  192 (398)
                      ++||+...+..++
T Consensus       187 ~~sH~~~~~~~~~  199 (220)
T cd03263         187 LTTHSMDEAEALC  199 (220)
T ss_pred             EEcCCHHHHHHhc
Confidence            9999998776643

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.78  E-value=8.3e-08  Score=85.88  Aligned_cols=137  Identities=16%  Similarity=0.203  Sum_probs=85.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c-----------------cceEEEEecC---Cccc-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F-----------------VPRIWVCTMS---GQKT-----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F-----------------~~~~~v~~v~---~~~~-----------  107 (398)
                      .-.+++|+|++|+|||||++.+..-... ...  |                 ....++..-.   ...+           
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV  106 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence            4568999999999999999999764210 000  0                 0111111000   0001           


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                             .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  186 (214)
T TIGR02673       107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR  186 (214)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence                   11233456666676542 2223358899999999999999999999999999   4444444444443  124


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      +..||++||+...+..++  ++++.+
T Consensus       187 ~~tii~~tH~~~~~~~~~--d~i~~l  210 (214)
T TIGR02673       187 GTTVIVATHDLSLVDRVA--HRVIIL  210 (214)
T ss_pred             CCEEEEEeCCHHHHHHhc--CEEEEe
Confidence            788999999988776543  344444

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.78  E-value=1.4e-07  Score=93.52  Aligned_cols=195  Identities=15%  Similarity=0.151  Sum_probs=109.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+..++.|...+..   ..-...+.++|+.|+||||+|+.+++.  +...+...     . .....-.....+..
T Consensus        13 ~dliGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G~GKTT~ArilAk~--LnC~~~~~-----~-~pCg~C~~C~~i~~   81 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTL---NKIPQSILLVGASGVGKTTCARIISLC--LNCSNGPT-----S-DPCGTCHNCISIKN   81 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCccHHHHHHHHHHH--HcCcCCCC-----C-CCccccHHHHHHhc
Confidence            6789999999999988864   223458999999999999999999764  11000000     0 00000000011111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEe-CChHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITS-RNEKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTT-R~~~v~~  189 (398)
                      ....+.......+..+.+..+..+...    +..+.-++|+|+++  +....+.|...+.. .+.+++|++| ....+..
T Consensus        82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~  161 (491)
T PRK14964         82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV  161 (491)
T ss_pred             cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence            000000000000112223333222221    12456799999998  44556666666652 3455666555 4455655


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......+++.+++. ++....+.+.+...+...++   +.+..|++.++|-+..+.
T Consensus       162 tI~SRc~~~~f~~l~~-~el~~~L~~ia~~Egi~i~~---eAL~lIa~~s~GslR~al  215 (491)
T PRK14964        162 TIISRCQRFDLQKIPT-DKLVEHLVDIAKKENIEHDE---ESLKLIAENSSGSMRNAL  215 (491)
T ss_pred             HHHHhheeeecccccH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            5556678899999998 66777777755544433333   356778888988876543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.78  E-value=7.2e-08  Score=83.29  Aligned_cols=130  Identities=21%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCC--CCCCC-C------CcCCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGV--DDGTT-N------SFEGQ  132 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~--~~~~~-~------~~~~~  132 (398)
                      .-.+++|+|++|+|||||++.++...   ....+.+++....- ....   ..+...++.  +.... .      ....+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~-~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS   97 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDI-KKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS   97 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEc-ccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence            45689999999999999999998752   22234444321100 0000   011111110  00000 0      00157


Q ss_pred             chHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          133 GLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       133 ~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .+++++..+.+.+..++-++++|++.   |....+.+...+.  ...|..||++||+......++  ++++.+
T Consensus        98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~--d~i~~l  168 (173)
T cd03230          98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLC--DRVAIL  168 (173)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC--CEEEEE
Confidence            88999999999999999999999999   4444444444443  123788999999998777543  344444

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.78  E-value=8.5e-08  Score=85.61  Aligned_cols=134  Identities=17%  Similarity=0.178  Sum_probs=82.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c-------------cceEEEEecC---CcccH-----------------
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F-------------VPRIWVCTMS---GQKTA-----------------  108 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F-------------~~~~~v~~v~---~~~~~-----------------  108 (398)
                      +++|+|++|+|||||++.++.-... ...  |             ....++..-.   ...+.                 
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE  106 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence            8999999999999999999754110 000  0             0011111000   00011                 


Q ss_pred             -HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEe
Q 015891          109 -ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITS  182 (398)
Q Consensus       109 -~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTT  182 (398)
                       ......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++|
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs  186 (211)
T cd03264         107 VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST  186 (211)
T ss_pred             HHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence             1223456666666532 2233448999999999999999999999999999   4444444444443 12247899999


Q ss_pred             CChHHHHHhcCCCceEEc
Q 015891          183 RNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       183 R~~~v~~~~~~~~~~~~l  200 (398)
                      |+......++  ++++.+
T Consensus       187 H~~~~~~~~~--d~i~~l  202 (211)
T cd03264         187 HIVEDVESLC--NQVAVL  202 (211)
T ss_pred             CCHHHHHHhC--CEEEEE
Confidence            9998776543  344444

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.78  E-value=1.1e-07  Score=89.72  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=83.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCc------ccH-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQ------KTA-----------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~------~~~-----------  108 (398)
                      .-.+++|.|++|+|||||++.+......   ..+.++                +.++.+.      .+.           
T Consensus        27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~---~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~  103 (301)
T TIGR03522        27 KGRIVGFLGPNGAGKSTTMKIITGYLPP---DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY  103 (301)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence            4568999999999999999999764211   011111                1111110      001           


Q ss_pred             -------HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCC
Q 015891          109 -------ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGE  176 (398)
Q Consensus       109 -------~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs  176 (398)
                             ......++..+++.... ......+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+.
T Consensus       104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~  183 (301)
T TIGR03522       104 GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK  183 (301)
T ss_pred             CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence                   12345566677776432 222348899999999999999999999999999   4444444443332 12368


Q ss_pred             EEEEEeCChHHHHHhcCC
Q 015891          177 RLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~  194 (398)
                      .||+|||+...+..+++.
T Consensus       184 tiii~sH~l~~~~~~~d~  201 (301)
T TIGR03522       184 TIILSTHIMQEVEAICDR  201 (301)
T ss_pred             EEEEEcCCHHHHHHhCCE
Confidence            899999999877665444

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.78  E-value=1.3e-07  Score=84.46  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------ceEEEEec---CCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------PRIWVCTM---SGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------~~~~v~~v---~~~~~----------------  107 (398)
                      .-.+++|.|++|+|||||++.+....... .  .|+            ...++..-   ....+                
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~  104 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK  104 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence            45689999999999999999997652110 0  010            01121100   00001                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ..+....+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..|
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv  184 (213)
T cd03301         105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT  184 (213)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence              01223455667776532 2233458899999999999999999999999999   4444444444443   1237899


Q ss_pred             EEEeCChHHHHHh
Q 015891          179 IITSRNEKLTTEM  191 (398)
Q Consensus       179 IiTTR~~~v~~~~  191 (398)
                      |++||+...+..+
T Consensus       185 i~~sH~~~~~~~~  197 (213)
T cd03301         185 IYVTHDQVEAMTM  197 (213)
T ss_pred             EEEeCCHHHHHHh
Confidence            9999998876654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.78  E-value=1.7e-07  Score=85.02  Aligned_cols=169  Identities=18%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             CCcc-cch-hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVH-GFA-NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~v-GR~-~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ++|+ |-. ..+..+..+...    .....+.|+|++|+|||+|++++++.  ....-..+.|+. +.....        
T Consensus        22 d~f~~~~n~~a~~~l~~~~~~----~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~-~~~~~~--------   86 (235)
T PRK08084         22 ASFYPGDNDSLLAALQNALRQ----EHSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVP-LDKRAW--------   86 (235)
T ss_pred             cccccCccHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE-HHHHhh--------
Confidence            4454 622 234444444422    33468999999999999999999876  222222344555 321000        


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCC-CEEEEEeCCh---
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYG-ERLIITSRNE---  185 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~g-s~IIiTTR~~---  185 (398)
                                       ....    +.+.+. +-.+|++||+..    ..+.+.+...+.  ...| .++|+||+..   
T Consensus        87 -----------------~~~~----~~~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~  144 (235)
T PRK08084         87 -----------------FVPE----VLEGME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ  144 (235)
T ss_pred             -----------------hhHH----HHHHhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence                             0001    111111 125899999973    344445544443  1223 4799999854   


Q ss_pred             ------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          186 ------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       186 ------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                            ++.+.+ ....++++++++. ++...++.+.+...+...++   +...-|++.+.|-..++..
T Consensus       145 l~~~~~~L~SRl-~~g~~~~l~~~~~-~~~~~~l~~~a~~~~~~l~~---~v~~~L~~~~~~d~r~l~~  208 (235)
T PRK08084        145 LNLGLPDLASRL-DWGQIYKLQPLSD-EEKLQALQLRARLRGFELPE---DVGRFLLKRLDREMRTLFM  208 (235)
T ss_pred             cCcccHHHHHHH-hCCceeeecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhhcCCHHHHHH
Confidence                  233333 3457899999998 66766666633332333333   3566677777766655443

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.78  E-value=1e-07  Score=86.44  Aligned_cols=137  Identities=18%  Similarity=0.204  Sum_probs=83.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEecCCc------cc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCTMSGQ------KT-------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~v~~~------~~-------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .++.            ...+.++.+.      .+             
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  104 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG  104 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence            45689999999999999999997542110 0  0000            0001111111      00             


Q ss_pred             -----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          108 -----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       108 -----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                           .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+.
T Consensus       105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~  184 (232)
T cd03218         105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI  184 (232)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence                 01123456666766542 2223348899999999999999999999999999   4444444444332  22477


Q ss_pred             EEEEEeCChHHHHHhcCCCceEEc
Q 015891          177 RLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .||++||+.+.+..++  ++++.+
T Consensus       185 tii~~sH~~~~~~~~~--d~i~~l  206 (232)
T cd03218         185 GVLITDHNVRETLSIT--DRAYII  206 (232)
T ss_pred             EEEEEeCCHHHHHHhC--CEEEEE
Confidence            8999999987666543  334444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.78  E-value=1e-07  Score=93.30  Aligned_cols=204  Identities=12%  Similarity=0.104  Sum_probs=108.6

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      -++++|.+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-...+....|..........-...+.+.
T Consensus        15 ~~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~   91 (397)
T PRK14955         15 FADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD   91 (397)
T ss_pred             HhhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence            36789999999999998864   123456889999999999999999876211111111111100011111001111111


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEe-CChHH
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITS-RNEKL  187 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTT-R~~~v  187 (398)
                      .....+............+..+. +...+     ..++.++|+||++.  ....+.+...+... +.+.+|++| +...+
T Consensus        92 ~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl  170 (397)
T PRK14955         92 AGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI  170 (397)
T ss_pred             cCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence            11111000000001122333333 22333     24566999999983  34555666666533 355555555 44445


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ...+......+++.+++. ++....+...+...+...+   .+.+..|++.++|.+..+..
T Consensus       171 ~~tl~sR~~~v~f~~l~~-~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~  227 (397)
T PRK14955        171 PATIASRCQRFNFKRIPL-EEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS  227 (397)
T ss_pred             HHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence            444433456789999998 6566666665543332222   23677788889987765543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.77  E-value=6.6e-08  Score=83.94  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=78.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe--cCCcc-cHHHHHHHHHHHcCC--CCCCCC-------Cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT--MSGQK-TAESIVKRILKRLGV--DDGTTN-------SF  129 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~--v~~~~-~~~~~~~~il~~l~~--~~~~~~-------~~  129 (398)
                      .-.+++|.|++|+|||||++.++..  . ....+.+.+..  +.... ....    ..+.++.  +.....       ..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l   97 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL--E-EPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENI   97 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhe
Confidence            4568999999999999999999875  2 22334444321  11100 0011    1111110  000000       00


Q ss_pred             --CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 --EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 --~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                        ..+.++.++..+.+++..++-+++||++.   |......+...+.   ...+..||++||+......++  ++++.+
T Consensus        98 ~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~--d~i~~l  174 (178)
T cd03229          98 ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA--DRVVVL  174 (178)
T ss_pred             eecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc--CEEEEE
Confidence              05788999999999999999999999998   4444444444443   222689999999988776542  344444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.77  E-value=1.4e-07  Score=84.41  Aligned_cols=137  Identities=15%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-----------------ceEEEEe---cCCccc-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-----------------PRIWVCT---MSGQKT-----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-----------------~~~~v~~---v~~~~~-----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  |+                 .+.++..   +....+           
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~  105 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV  105 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence            4568999999999999999999765211 000  10                 0111110   000000           


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                             ....+..+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~  185 (214)
T cd03292         106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA  185 (214)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence                   01223456666666542 2223347899999999999999999999999999   4444444444433  234


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      +..||++||+......++  ++++.+
T Consensus       186 ~~tiiivtH~~~~~~~~~--d~i~~l  209 (214)
T cd03292         186 GTTVVVATHAKELVDTTR--HRVIAL  209 (214)
T ss_pred             CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence            788999999988776543  344444

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.77  E-value=1e-07  Score=79.07  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcC
Q 015891           41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG  120 (398)
Q Consensus        41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~  120 (398)
                      +|++..+..+...+..    ...+.+.|+|++|+|||++++.+++.  ....-..++++. .............+...  
T Consensus         1 ~~~~~~~~~i~~~~~~----~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~--   71 (151)
T cd00009           1 VGQEEAIEALREALEL----PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLN-ASDLLEGLVVAELFGHF--   71 (151)
T ss_pred             CchHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEe-hhhhhhhhHHHHHhhhh--
Confidence            4788888999888853    35678999999999999999999987  322222344444 33222211111000000  


Q ss_pred             CCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcC---C----CCCCEEEEEeCCh
Q 015891          121 VDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLP---R----GYGERLIITSRNE  185 (398)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~---~----~~gs~IIiTTR~~  185 (398)
                                     ............++.++|+||++..  .....+...+.   .    ..+.++|+||...
T Consensus        72 ---------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~  130 (151)
T cd00009          72 ---------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP  130 (151)
T ss_pred             ---------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence                           0111122333456789999999953  22222222222   1    3578888888765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.77  E-value=1.5e-07  Score=81.61  Aligned_cols=129  Identities=17%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC--CCCCC--------CcCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD--DGTTN--------SFEG  131 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~--~~~~~--------~~~~  131 (398)
                      .-.+++|.|++|+|||||++.++...   ....+.+++...    ........+-..++.-  .....        ....
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L   99 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV----PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF   99 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE----EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence            45689999999999999999998762   122333333311    1111001111111100  00000        2346


Q ss_pred             CchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          132 QGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       132 ~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      +.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......   .++++.+
T Consensus       100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~~~~l  169 (178)
T cd03247         100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH---MDKILFL  169 (178)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh---CCEEEEE
Confidence            889999999999999999999999999   4444444443332 1247889999999987753   2445544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.77  E-value=2e-07  Score=88.68  Aligned_cols=181  Identities=14%  Similarity=0.214  Sum_probs=103.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-ecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-TMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-~v~~~~~~~~~~~~il  116 (398)
                      ++++|++..++.+..++..    .....+.|+|++|+||||+++.+++... ...+.. .++. +.+...... .....+
T Consensus        17 ~~~~g~~~~~~~l~~~i~~----~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~~i   89 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKE----KNMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRNKI   89 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHHHH
Confidence            5689999999999999854    3344579999999999999999987621 111211 1222 011111111 111111


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhc
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMV  192 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~  192 (398)
                      ..+....+                   .....+-++++||++.  .+..+.+...+. ....+.+|+++... .+...+.
T Consensus        90 ~~~~~~~~-------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~  150 (319)
T PRK00440         90 KEFARTAP-------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ  150 (319)
T ss_pred             HHHHhcCC-------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence            11110000                   0012356999999983  344445555554 33456777776432 2322222


Q ss_pred             CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          193 GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       193 ~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .....+++.+++. ++....+.+.+...+...++   +.+..+++.++|.+..+..
T Consensus       151 sr~~~~~~~~l~~-~ei~~~l~~~~~~~~~~i~~---~al~~l~~~~~gd~r~~~~  202 (319)
T PRK00440        151 SRCAVFRFSPLKK-EAVAERLRYIAENEGIEITD---DALEAIYYVSEGDMRKAIN  202 (319)
T ss_pred             HHhheeeeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            3345789999998 55666666655443333333   3677788889888776543

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.77  E-value=8e-08  Score=91.77  Aligned_cols=133  Identities=15%  Similarity=0.216  Sum_probs=85.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c----------cc--------c-ceEEEEe---cCCccc-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T----------QF--------V-PRIWVCT---MSGQKT-----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~----------~F--------~-~~~~v~~---v~~~~~-----------  107 (398)
                      .-.+++|+|++|+|||||++.+..-.... .          .+        . .+.++..   +....+           
T Consensus        30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~  109 (343)
T TIGR02314        30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  109 (343)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence            45689999999999999999996542110 0          00        0 0111110   000000           


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG  173 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~  173 (398)
                             ......++++.+++... .......+++++++..++++|..++-++++|++.   |....+.+...+.   ..
T Consensus       110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~  189 (343)
T TIGR02314       110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR  189 (343)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence                   11234566777777653 2334458999999999999999999999999999   4444444433333   22


Q ss_pred             CCCEEEEEeCChHHHHHhcCC
Q 015891          174 YGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      .|.+||++||+.+++..+++.
T Consensus       190 ~g~tiiliTH~~~~v~~~~d~  210 (343)
T TIGR02314       190 LGLTILLITHEMDVVKRICDC  210 (343)
T ss_pred             cCCEEEEEeCCHHHHHHhCCE
Confidence            478999999999988775443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.77  E-value=8.5e-08  Score=99.62  Aligned_cols=170  Identities=19%  Similarity=0.282  Sum_probs=97.6

Q ss_pred             CCcccchhhHH---HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFANEEL---HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~~~~~---~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      ++|+|.+..+.   .+..++..    .....+.|+|++|+||||||+.+++.  ....|.   .+. ... .... .++.
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~----~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~ln-a~~-~~i~-dir~   95 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKA----DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLN-AVL-AGVK-DLRA   95 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eeh-hhh-hhhH-HHHH
Confidence            56899988774   46666643    45667899999999999999999987  444431   111 100 0000 0011


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEE--EeCChH--
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLII--TSRNEK--  186 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIi--TTR~~~--  186 (398)
                      +                      .......+  .+++.+|+|||++  +..+.+.|...+.  .++.++|  ||.+..  
T Consensus        96 ~----------------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE--~g~IiLI~aTTenp~~~  151 (725)
T PRK13341         96 E----------------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE--NGTITLIGATTENPYFE  151 (725)
T ss_pred             H----------------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc--CceEEEEEecCCChHhh
Confidence            1                      11111111  2356799999998  4455555554443  2444444  334432  


Q ss_pred             HHHHhcCCCceEEcCCCCChhHHHHHHHhhhC-------CCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVR-------DKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~-------~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      +...+......+.++||+. ++...++.+++.       ......+   .+....|++.+.|....+.
T Consensus       152 l~~aL~SR~~v~~l~pLs~-edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~ll  215 (725)
T PRK13341        152 VNKALVSRSRLFRLKSLSD-EDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSLL  215 (725)
T ss_pred             hhhHhhccccceecCCCCH-HHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHHH
Confidence            2222223456899999998 778888877554       2222222   3356677777877655443

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.77  E-value=2.2e-08  Score=92.04  Aligned_cols=103  Identities=15%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEE
Q 015891          111 IVKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLI  179 (398)
Q Consensus       111 ~~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~II  179 (398)
                      ...++++.++++..    ...+.+.+++..++..++-.+..++-|||-|+++..       ..++.|.... ...|..+|
T Consensus       130 ~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~-~e~~~aii  208 (316)
T COG0444         130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ-REKGTALI  208 (316)
T ss_pred             HHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH-HhcCCEEE
Confidence            45567777888765    345667899999999999999999999999999943       2333333332 35799999


Q ss_pred             EEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          180 ITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       180 iTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      ++|||-.+...+++...++.-+.+-+.-....+|.
T Consensus       209 lITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~  243 (316)
T COG0444         209 LITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK  243 (316)
T ss_pred             EEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence            99999998888766433333333333233344553

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.77  E-value=1.9e-07  Score=84.14  Aligned_cols=130  Identities=19%  Similarity=0.240  Sum_probs=82.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc---------eEEEEe-----------cCC--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP---------RIWVCT-----------MSG--------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~---------~~~v~~-----------v~~--------------  104 (398)
                      .-.+++|.|++|+|||||++.+....... .  .|+.         ..++..           +..              
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~   84 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR   84 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence            35689999999999999999997642110 0  0110         111110           000              


Q ss_pred             cc--cHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          105 QK--TAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       105 ~~--~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                      ..  ........+++.+++.... ......+.+++++..+.+.+..++-++++|++.   |....+.+...+.  ...+.
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~  164 (223)
T TIGR03771        85 RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT  164 (223)
T ss_pred             CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence            00  0112345567777775422 223348899999999999999999999999999   4444444444443  23478


Q ss_pred             EEEEEeCChHHHHHh
Q 015891          177 RLIITSRNEKLTTEM  191 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~  191 (398)
                      .||++||+.+....+
T Consensus       165 tvii~sH~~~~~~~~  179 (223)
T TIGR03771       165 AILMTTHDLAQAMAT  179 (223)
T ss_pred             EEEEEeCCHHHHHHh
Confidence            999999999866654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.76  E-value=1.9e-07  Score=83.57  Aligned_cols=130  Identities=18%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc------------------ceEEEEecC---CcccH--------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV------------------PRIWVCTMS---GQKTA--------  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~------------------~~~~v~~v~---~~~~~--------  108 (398)
                      .. .+++|+|++|+|||||++.+..-... ...  |+                  ...++..-.   ...+.        
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~  100 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL  100 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence            46 89999999999999999999764211 000  10                  011111000   00011        


Q ss_pred             --------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891          109 --------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG  173 (398)
Q Consensus       109 --------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~  173 (398)
                              .....++++.+++... .......+.+++++..+.+++..++-+++||++.   |....+.+...+.   ..
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  180 (214)
T cd03297         101 KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN  180 (214)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence                    1123456677776542 2233458899999999999999999999999999   4444444444443   22


Q ss_pred             CCCEEEEEeCChHHHHHh
Q 015891          174 YGERLIITSRNEKLTTEM  191 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~  191 (398)
                      .|..||++||+.+....+
T Consensus       181 ~~~tiii~sH~~~~~~~~  198 (214)
T cd03297         181 LNIPVIFVTHDLSEAEYL  198 (214)
T ss_pred             cCcEEEEEecCHHHHHHh
Confidence            377899999999877654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=7.5e-08  Score=92.62  Aligned_cols=132  Identities=13%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEe---------cCCc---------c--
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCT---------MSGQ---------K--  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~---------v~~~---------~--  106 (398)
                      .-.+++|.|++|+|||||.+.++.-.... .  .|+.            +.++..         +.++         .  
T Consensus        29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~  108 (356)
T PRK11650         29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK  108 (356)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence            34689999999999999999997642110 0  0110            111100         0000         0  


Q ss_pred             -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                       .......++++.+++... .......+++++++..+.+.|..++-+++||++.   |....+.+...+.   ...|..+
T Consensus       109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti  188 (356)
T PRK11650        109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTS  188 (356)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence             112334567777777643 2233458999999999999999999999999999   3333333333332   2347899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       189 i~vTHd~~ea~~l~D  203 (356)
T PRK11650        189 LYVTHDQVEAMTLAD  203 (356)
T ss_pred             EEEeCCHHHHHHhCC
Confidence            999999887766544

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=2e-07  Score=83.36  Aligned_cols=132  Identities=18%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-----------eEEEEec---CCccc---------------H
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-----------RIWVCTM---SGQKT---------------A  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-----------~~~v~~v---~~~~~---------------~  108 (398)
                      ..-.+++|.|++|+|||||++.+....... .  .|+.           +.++..-   ....+               .
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~  114 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRA  114 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcH
Confidence            345689999999999999999997652110 0  0110           1222100   00001               1


Q ss_pred             HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891          109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS  182 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT  182 (398)
                      ......++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++|
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s  194 (214)
T PRK13543        115 KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT  194 (214)
T ss_pred             HHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            1233456666776532 2223348899999999999999999999999998   4444444444442  23467899999


Q ss_pred             CChHHHHHhc
Q 015891          183 RNEKLTTEMV  192 (398)
Q Consensus       183 R~~~v~~~~~  192 (398)
                      |+...+..++
T Consensus       195 H~~~~~~~~~  204 (214)
T PRK13543        195 HGAYAAPPVR  204 (214)
T ss_pred             cChhhhhhhc
Confidence            9998777653

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=1.4e-07  Score=87.63  Aligned_cols=132  Identities=19%  Similarity=0.141  Sum_probs=83.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccce-----------EEEEecCCcc---------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPR-----------IWVCTMSGQK---------------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~-----------~~v~~v~~~~---------------------  106 (398)
                      .-.+++|+|++|+|||||++.+..-... ...  |+..           .-+.++.+..                     
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~  109 (274)
T PRK13647         30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG  109 (274)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence            4579999999999999999999754111 000  0000           0011111110                     


Q ss_pred             ----cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          107 ----TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       107 ----~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                          ........++..+++... .......+.+++++..+.+++..++-+++||++.   |......+...+.  ...|.
T Consensus       110 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~  189 (274)
T PRK13647        110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK  189 (274)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence                011223455666676532 2233458999999999999999999999999999   4444444444432  12378


Q ss_pred             EEEEEeCChHHHHHhcC
Q 015891          177 RLIITSRNEKLTTEMVG  193 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~  193 (398)
                      .||++||+.+.+..+++
T Consensus       190 tili~tH~~~~~~~~~d  206 (274)
T PRK13647        190 TVIVATHDVDLAAEWAD  206 (274)
T ss_pred             EEEEEeCCHHHHHHhCC
Confidence            99999999987765433

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=1.4e-07  Score=88.98  Aligned_cols=82  Identities=17%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..+++..+++..  ........+.+++++..+++.+..++-+|+||++.   |....+.+...+.  ...|.+||++||+
T Consensus       145 ~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd  224 (305)
T PRK13651        145 AAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD  224 (305)
T ss_pred             HHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence            456677778752  23344458999999999999999999999999999   4444444433332  2347899999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      .+.+..+++
T Consensus       225 ~~~~~~~ad  233 (305)
T PRK13651        225 LDNVLEWTK  233 (305)
T ss_pred             HHHHHHhCC
Confidence            886655433

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=1.7e-07  Score=83.14  Aligned_cols=130  Identities=14%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-------------eEEEEe---cCCcc---------------c
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-------------RIWVCT---MSGQK---------------T  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-------------~~~v~~---v~~~~---------------~  107 (398)
                      .-.+++|.|++|+|||||++.++...... .  .|+.             ..++..   +....               .
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  105 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPG  105 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCcc
Confidence            45689999999999999999997652110 0  0110             111110   00000               1


Q ss_pred             HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEE
Q 015891          108 AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIIT  181 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiT  181 (398)
                      .......+++.+++... .......+.+++++..+.+.+..++-++++|++.   |....+.+...+.  ...+..||++
T Consensus       106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~  185 (204)
T PRK13538        106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT  185 (204)
T ss_pred             HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            11234456777777532 2233448899999999999999999999999999   4444444444443  2346789999


Q ss_pred             eCChHHHHHh
Q 015891          182 SRNEKLTTEM  191 (398)
Q Consensus       182 TR~~~v~~~~  191 (398)
                      ||+......+
T Consensus       186 sh~~~~i~~~  195 (204)
T PRK13538        186 THQDLPVASD  195 (204)
T ss_pred             ecChhhhccC
Confidence            9998887765

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.76  E-value=1e-07  Score=89.92  Aligned_cols=132  Identities=15%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-------------ceEEEEe---cCCcccHH-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-------------PRIWVCT---MSGQKTAE-------------  109 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-------------~~~~v~~---v~~~~~~~-------------  109 (398)
                      .-.+++|.|++|+|||||++.+..-..- ..  .|.             ...++..   +....+..             
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  108 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS  108 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence            4568999999999999999999764210 00  000             0112110   00000111             


Q ss_pred             -----HHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891          110 -----SIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL  178 (398)
Q Consensus       110 -----~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I  178 (398)
                           .....++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..|
T Consensus       109 ~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ti  188 (303)
T TIGR01288       109 TREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTI  188 (303)
T ss_pred             HHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence                 122345566666542 2223348999999999999999999999999999   4444444443332  2347899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       189 l~~sH~~~~~~~~~d  203 (303)
T TIGR01288       189 LLTTHFMEEAERLCD  203 (303)
T ss_pred             EEECCCHHHHHHhCC
Confidence            999999987766543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.76  E-value=1.6e-07  Score=93.65  Aligned_cols=198  Identities=17%  Similarity=0.151  Sum_probs=111.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccce-EEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR-IWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~~v~~v~~~~~~~~~~~~il  116 (398)
                      .+++|.+..+..|...+..   ..-...+.++|+.|+||||+|+.+++...-....... .+.. .......    ..+.
T Consensus        21 ~dliGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~-C~~C~~C----~~i~   92 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILN---DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT-CEQCTNC----ISFN   92 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC-CCCChHH----HHHh
Confidence            5689999999999988754   2335688999999999999999998762111111000 0000 0000000    0011


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEE-EeCChHHH
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLII-TSRNEKLT  188 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIi-TTR~~~v~  188 (398)
                      ......-......+..+.+..+..+...    +.+++.++|+||++.  ...++.|...+.. .+.+.+|+ ||+...+.
T Consensus        93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~  172 (507)
T PRK06645         93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP  172 (507)
T ss_pred             cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence            0000000000000112333333333222    234567999999994  4556666666653 33455554 55555565


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      ..+......+++.+++. ++....+.+.+...+....+   +.+..|++.++|.+..+.
T Consensus       173 ~tI~SRc~~~ef~~ls~-~el~~~L~~i~~~egi~ie~---eAL~~Ia~~s~GslR~al  227 (507)
T PRK06645        173 ATIISRCQRYDLRRLSF-EEIFKLLEYITKQENLKTDI---EALRIIAYKSEGSARDAV  227 (507)
T ss_pred             HHHHhcceEEEccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            55545567899999998 66777887766544433332   356678888998876543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.6e-07  Score=80.86  Aligned_cols=130  Identities=20%  Similarity=0.242  Sum_probs=90.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-----cccc--------------eEEEEecCCc----------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-----QFVP--------------RIWVCTMSGQ----------------  105 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-----~F~~--------------~~~v~~v~~~----------------  105 (398)
                      ..-.+.+|.||+|+|||||+..+..++.+.-     .|+.              .+|+. +..+                
T Consensus        28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLa-fQ~P~ei~GV~~~~fLr~a~  106 (251)
T COG0396          28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLA-FQYPVEIPGVTNSDFLRAAM  106 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEe-ecCCccCCCeeHHHHHHHHH
Confidence            3456889999999999999999987653321     1221              12332 1100                


Q ss_pred             ----------ccHHHHHHHHHHHcCCCCC---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH
Q 015891          106 ----------KTAESIVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV  169 (398)
Q Consensus       106 ----------~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~  169 (398)
                                ......+++.+..+++++.   ..-....++++..+..+.+.+.-+|-|.|||+++   |.+.++.+...
T Consensus       107 n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~  186 (251)
T COG0396         107 NARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG  186 (251)
T ss_pred             HhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHH
Confidence                      1223455566777777652   1112337889999999999999999999999999   45666666665


Q ss_pred             cC--CCCCCEEEEEeCChHHHHHh
Q 015891          170 LP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       170 l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +.  ..+++.+|++||...++..+
T Consensus       187 i~~lr~~~~~~liITHy~rll~~i  210 (251)
T COG0396         187 INALREEGRGVLIITHYQRLLDYI  210 (251)
T ss_pred             HHHHhcCCCeEEEEecHHHHHhhc
Confidence            54  46788999999999999886

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.76  E-value=2.5e-07  Score=95.30  Aligned_cols=176  Identities=11%  Similarity=0.082  Sum_probs=100.8

Q ss_pred             CCCcccchhhHHHHHHHHhccCC-CCCeeEEEEEcCCCChHHHHHHHHHcCCCC---Ccccc--ceEEEEecCCcccHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGT-DDQFRAIGVVGVAGVGKTTLCQRIFHKPDV---KTQFV--PRIWVCTMSGQKTAES  110 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~-~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~~v~~v~~~~~~~~  110 (398)
                      |+.+.||++++++|...|...-. .....++.|+|++|.|||++++.+.+....   .....  .++++. ...-.....
T Consensus       754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~Lstp~s  832 (1164)
T PTZ00112        754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNVVHPNA  832 (1164)
T ss_pred             CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCccCCHHH
Confidence            47899999999999998876322 233456789999999999999999765210   11122  134555 455566777


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh---CCCcEEEecCCCCHH--HHHHHHhHcC--CCCCCEEE--EE
Q 015891          111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI---GKRYLIVLDDFEDME--VCKHLSKVLP--RGYGERLI--IT  181 (398)
Q Consensus       111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~~~--~~~~l~~~l~--~~~gs~II--iT  181 (398)
                      ++..|..+|....+.    ...........+...+.   ....+|||||++...  ..+.|..++.  ...+++|+  .+
T Consensus       833 IYqvI~qqL~g~~P~----~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI  908 (1164)
T PTZ00112        833 AYQVLYKQLFNKKPP----NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI  908 (1164)
T ss_pred             HHHHHHHHHcCCCCC----ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence            788888887433211    11122223333443332   124599999999431  2223333332  23455544  34


Q ss_pred             eCChHHHHH----hcC--CCceEEcCCCCChhHHHHHHHhhhC
Q 015891          182 SRNEKLTTE----MVG--EENLHQLQPLSDQESCWLIYRDSVR  218 (398)
Q Consensus       182 TR~~~v~~~----~~~--~~~~~~l~~L~~~e~~~~l~~~~~~  218 (398)
                      |.+.++...    +..  ....+.+.|.+. +....++.+.+.
T Consensus       909 SNdlDLperLdPRLRSRLg~eeIvF~PYTa-EQL~dILk~RAe  950 (1164)
T PTZ00112        909 SNTMDLPERLIPRCRSRLAFGRLVFSPYKG-DEIEKIIKERLE  950 (1164)
T ss_pred             cCchhcchhhhhhhhhccccccccCCCCCH-HHHHHHHHHHHH
Confidence            543322211    111  123466788888 667777777554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.75  E-value=6.4e-08  Score=86.42  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=83.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc------------eEEEEecC---Cccc---------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP------------RIWVCTMS---GQKT---------------  107 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~------------~~~v~~v~---~~~~---------------  107 (398)
                      ..-.+++|.|++|+|||||++.+..-... ..  .++.            ..++..-.   ...+               
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  101 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKL  101 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCc
Confidence            34578999999999999999999764211 00  0000            11111000   0000               


Q ss_pred             ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891          108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~  177 (398)
                         .......++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t  181 (211)
T cd03298         102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT  181 (211)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence               12234556666776532 2233458999999999999999999999999999   4444444444443   224788


Q ss_pred             EEEEeCChHHHHHh
Q 015891          178 LIITSRNEKLTTEM  191 (398)
Q Consensus       178 IIiTTR~~~v~~~~  191 (398)
                      ||++||+...+..+
T Consensus       182 ii~~sH~~~~~~~~  195 (211)
T cd03298         182 VLMVTHQPEDAKRL  195 (211)
T ss_pred             EEEEecCHHHHHhh
Confidence            99999999877664

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.75  E-value=2.6e-07  Score=92.85  Aligned_cols=179  Identities=18%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-------------------cccceEE
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-------------------QFVPRIW   98 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~~   98 (398)
                      ++++|.+..++.|...+..   ..-...+.++|+.|+||||+|+.+++...-..                   .|...++
T Consensus        16 ~diiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie   92 (546)
T PRK14957         16 AEVAGQQHALNSLVHALET---QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE   92 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence            5789999999999998864   22345688999999999999999987521100                   0111111


Q ss_pred             EEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHH-HHhCCCcEEEecCCC--CHHHHHHHHhHcCCC-C
Q 015891           99 VCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQ-QLIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-Y  174 (398)
Q Consensus        99 v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~  174 (398)
                      +. .......                       .....+...+.. -..+++.++|+||++  +....+.|...+... .
T Consensus        93 id-aas~~gv-----------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~  148 (546)
T PRK14957         93 ID-AASRTGV-----------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE  148 (546)
T ss_pred             ee-cccccCH-----------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence            11 1000000                       111111111111 123466799999998  445666666666533 3


Q ss_pred             CCEEEEEe-CChHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          175 GERLIITS-RNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       175 gs~IIiTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+++|++| ....+...+......+++.+++. ++....+.+.+...+....+   .....|++.++|-+..+.
T Consensus       149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~-~eI~~~L~~il~~egi~~e~---~Al~~Ia~~s~GdlR~al  218 (546)
T PRK14957        149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQ-ADIKDQLKIILAKENINSDE---QSLEYIAYHAKGSLRDAL  218 (546)
T ss_pred             CceEEEEECChhhhhhhHHHheeeEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            45555444 44445544445578999999998 55666666654433332222   256678888888776443

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.75  E-value=9.8e-08  Score=87.51  Aligned_cols=137  Identities=17%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCcc--------cH-----------HHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQK--------TA-----------ESIVKRILKRL  119 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~~--------~~-----------~~~~~~il~~l  119 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  +.....+.++.+..        +.           ......+++.+
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV  108 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence            4578999999999999999999865211 110  11100011111110        01           12234566677


Q ss_pred             CCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhc
Q 015891          120 GVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       120 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+..||++||+...+..++
T Consensus       109 gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~  188 (251)
T PRK09544        109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKT  188 (251)
T ss_pred             CChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence            76542 2223347899999999999999999999999999   4444444444432   223788999999998776643


Q ss_pred             CCCceEEc
Q 015891          193 GEENLHQL  200 (398)
Q Consensus       193 ~~~~~~~l  200 (398)
                        ++++.+
T Consensus       189 --d~i~~l  194 (251)
T PRK09544        189 --DEVLCL  194 (251)
T ss_pred             --CEEEEE
Confidence              344444

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.75  E-value=3.1e-07  Score=91.24  Aligned_cols=190  Identities=16%  Similarity=0.225  Sum_probs=101.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--ccceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      +++||.+...+.|...+..   ..-...+.++|++|+||||+|+.+++...-...  +.. +..+         .....+
T Consensus        14 ~divGq~~i~~~L~~~i~~---~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p-c~~c---------~~c~~i   80 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKK---NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP-CNEC---------RACRSI   80 (472)
T ss_pred             HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC-Cccc---------HHHHHH
Confidence            6789999888888888754   223356899999999999999999876211110  100 0000         000000


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHH-----HhCCCcEEEecCCCCH--HHHHHHHhHcCCCC-CCEEEEEeCC-hH
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQ-----LIGKRYLIVLDDFEDM--EVCKHLSKVLPRGY-GERLIITSRN-EK  186 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~-gs~IIiTTR~-~~  186 (398)
                      ...-.............+.+..+. +...     ..+++.++|+||++..  ...+.|...+...+ ...+|++|.+ ..
T Consensus        81 ~~g~~~dv~el~aa~~~gid~iR~-i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k  159 (472)
T PRK14962         81 DEGTFMDVIELDAASNRGIDEIRK-IRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK  159 (472)
T ss_pred             hcCCCCccEEEeCcccCCHHHHHH-HHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence            000000000000000112222221 2222     1245679999999843  44455555554333 3444444433 44


Q ss_pred             HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      +...+......+++.+++. ++....+.+.+...+...++   +.+..|++.++|-...
T Consensus       160 l~~~L~SR~~vv~f~~l~~-~el~~~L~~i~~~egi~i~~---eal~~Ia~~s~GdlR~  214 (472)
T PRK14962        160 VPPTIISRCQVIEFRNISD-ELIIKRLQEVAEAEGIEIDR---EALSFIAKRASGGLRD  214 (472)
T ss_pred             hhHHHhcCcEEEEECCccH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHH
Confidence            5555545667899999999 56777777755443333333   3566778777665543

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=2.7e-07  Score=94.18  Aligned_cols=203  Identities=12%  Similarity=0.116  Sum_probs=109.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .++||.+..++.|...+..   ..-...+.++|+.|+||||+|+.+++...-...+..-.|..........-...+.+..
T Consensus        16 ~eivGQe~i~~~L~~~i~~---~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~   92 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRM---DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA   92 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence            6789999999999998854   2234568899999999999999998762211111101111101111110011111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcCCCC-CCEEEEEe-CChHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLPRGY-GERLIITS-RNEKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~-gs~IIiTT-R~~~v~~  189 (398)
                      .-..+............++++..+...    +.+++-++|+||++.  ....+.|...+..-+ .+.+|++| +...+..
T Consensus        93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~  172 (620)
T PRK14954         93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA  172 (620)
T ss_pred             cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence            100000000000112234444333222    234567899999984  355566666665332 44444444 4455555


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......+++.+++. ++....+.+.+...+...++   +.+..|++.++|....+.
T Consensus       173 TI~SRc~~vef~~l~~-~ei~~~L~~i~~~egi~I~~---eal~~La~~s~Gdlr~al  226 (620)
T PRK14954        173 TIASRCQRFNFKRIPL-DEIQSQLQMICRAEGIQIDA---DALQLIARKAQGSMRDAQ  226 (620)
T ss_pred             HHHhhceEEecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHHHH
Confidence            5556678999999998 55666666655433332223   266778888888665443

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3.4e-08  Score=95.28  Aligned_cols=130  Identities=22%  Similarity=0.237  Sum_probs=88.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-----eEEEEe---c-----------CCc-----c-cHHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-----RIWVCT---M-----------SGQ-----K-TAESIVKRIL  116 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-----~~~v~~---v-----------~~~-----~-~~~~~~~~il  116 (398)
                      .-+..|++|.+|+|||||.+++.+.  .-..|..     ..++..   +           .+.     . ...++...++
T Consensus       105 ~GrRYGLvGrNG~GKsTLLRaia~~--~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L  182 (582)
T KOG0062|consen  105 RGRRYGLVGRNGIGKSTLLRAIANG--QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL  182 (582)
T ss_pred             cccccceeCCCCCcHHHHHHHHHhc--CcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence            3567899999999999999999984  2333332     111110   0           001     0 2233444477


Q ss_pred             HHcCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891          117 KRLGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVLPRGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       117 ~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..+|+..+.  .+..+.+++-+.+..|++++-.++-||+||++++.   .....|..++... +.++||.|||+.++..+
T Consensus       183 ~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~-~~T~liVSHDr~FLn~V  261 (582)
T KOG0062|consen  183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW-KITSLIVSHDRNFLNTV  261 (582)
T ss_pred             HhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC-CceEEEEeccHHHHHHH
Confidence            788887642  23334788999999999999999999999999953   3334455555433 47899999999998876


Q ss_pred             cCC
Q 015891          192 VGE  194 (398)
Q Consensus       192 ~~~  194 (398)
                      +..
T Consensus       262 ~td  264 (582)
T KOG0062|consen  262 CTD  264 (582)
T ss_pred             HHH
Confidence            543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.74  E-value=1.1e-07  Score=82.04  Aligned_cols=129  Identities=19%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHHHHHHHHHcCCC--CCCC---CCcC--CCc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESIVKRILKRLGVD--DGTT---NSFE--GQG  133 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~--~~~~---~~~~--~~~  133 (398)
                      .-.+++|.|++|+|||||++.++.-  . ....+.+++.... ........    ...++.-  ....   ...+  .+.
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~   99 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGL--L-RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG   99 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc--c-CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence            4568999999999999999999875  2 2223334333110 00111111    1111110  0000   0000  578


Q ss_pred             hHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          134 LAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       134 ~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      +++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+......   .++++.+
T Consensus       100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~---~d~v~~l  168 (173)
T cd03246         100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS---ADRILVL  168 (173)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh---CCEEEEE
Confidence            9999999999999999999999999   4444444444432  2347899999999887643   2445544

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.74  E-value=1.7e-07  Score=85.36  Aligned_cols=131  Identities=18%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC---ccccceEEEEecCC----------------------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK---TQFVPRIWVCTMSG----------------------------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~~v~~v~~----------------------------------  104 (398)
                      .-..+++.|++|+|||||.+.++.=+.-.   -.|....|.+ +++                                  
T Consensus        27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D-~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~  105 (345)
T COG1118          27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD-VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR  105 (345)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccc-hhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence            46789999999999999999996431100   0122222222 110                                  


Q ss_pred             -----cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          105 -----QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       105 -----~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                           ......-..++++.+.+..- ...+...+++++++..++++|.-.|-+|+||++.   |..+...++..+.   .
T Consensus       106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~  185 (345)
T COG1118         106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD  185 (345)
T ss_pred             ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH
Confidence                 11233445566666655542 3345568999999999999999999999999998   5555555555554   3


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..|...+++|||...+..+.+
T Consensus       186 ~~~~ttvfVTHD~eea~~lad  206 (345)
T COG1118         186 RLGVTTVFVTHDQEEALELAD  206 (345)
T ss_pred             hhCceEEEEeCCHHHHHhhcc
Confidence            448889999999987777543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.74  E-value=1.4e-07  Score=85.31  Aligned_cols=137  Identities=17%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc---------eEEEEe---cCCcccH------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP---------RIWVCT---MSGQKTA------------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~---------~~~v~~---v~~~~~~------------------  108 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  |+.         ..++..   +....+.                  
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~   89 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS   89 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence            3468999999999999999999765211 000  100         011110   0000010                  


Q ss_pred             --HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEE
Q 015891          109 --ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLI  179 (398)
Q Consensus       109 --~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~II  179 (398)
                        ......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.   ...+..||
T Consensus        90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii  169 (230)
T TIGR01184        90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL  169 (230)
T ss_pred             HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence              1123455666676532 2223348999999999999999999999999999   4444444444443   22477899


Q ss_pred             EEeCChHHHHHhcCCCceEEc
Q 015891          180 ITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       180 iTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ++||+......++  ++++.+
T Consensus       170 ~~sH~~~~~~~~~--d~v~~l  188 (230)
T TIGR01184       170 MVTHDVDEALLLS--DRVVML  188 (230)
T ss_pred             EEeCCHHHHHHhc--CEEEEE
Confidence            9999988766643  344444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.74  E-value=4.9e-08  Score=92.16  Aligned_cols=138  Identities=17%  Similarity=0.205  Sum_probs=89.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC----------------------CccccceEEEEecC--Cc------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV----------------------KTQFVPRIWVCTMS--GQ------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~----------------------~~~F~~~~~v~~v~--~~------------  105 (398)
                      .-.++++.||+|+|||||.+.++.=...                      .--|...+.+..++  ++            
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~  109 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK  109 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence            3468999999999999999999542111                      11121111110011  11            


Q ss_pred             -ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHcC---CCCCCE
Q 015891          106 -KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       106 -~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~---~~~gs~  177 (398)
                       ....+...+.++.+++.... ..+.+.+++++++..+++.|..++-+++||++-+.   ...+.++..+.   ...|-+
T Consensus       110 ~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT  189 (352)
T COG3842         110 KAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT  189 (352)
T ss_pred             HHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence             12445677788888877643 33445899999999999999999999999999843   32233322221   344889


Q ss_pred             EEEEeCChHHHHHhcCCCceEE
Q 015891          178 LIITSRNEKLTTEMVGEENLHQ  199 (398)
Q Consensus       178 IIiTTR~~~v~~~~~~~~~~~~  199 (398)
                      .|+.|||..-+..+.+..-+++
T Consensus       190 ~i~VTHDqeEAl~msDrI~Vm~  211 (352)
T COG3842         190 FVYVTHDQEEALAMSDRIAVMN  211 (352)
T ss_pred             EEEEECCHHHHhhhccceEEcc
Confidence            9999999988887755433333

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.74  E-value=1.3e-07  Score=85.83  Aligned_cols=131  Identities=17%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEec---CCcccH---------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCTM---SGQKTA---------  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~v---~~~~~~---------  108 (398)
                      ..-.+++|+|++|+|||||++.++.-.... .  .|+                 .+.++..-   ....+.         
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~  108 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLE  108 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHH
Confidence            346789999999999999999997542110 0  010                 11111100   000011         


Q ss_pred             ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                               .....++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~  188 (233)
T cd03258         109 IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR  188 (233)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH
Confidence                     1123455666776542 2223347899999999999999999999999999   4444445544443   2


Q ss_pred             CCCCEEEEEeCChHHHHHh
Q 015891          173 GYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..|..||++||+.+.+..+
T Consensus       189 ~~~~tvii~sH~~~~~~~~  207 (233)
T cd03258         189 ELGLTIVLITHEMEVVKRI  207 (233)
T ss_pred             HcCCEEEEEeCCHHHHHHh
Confidence            2378999999998877654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=2.3e-07  Score=94.38  Aligned_cols=199  Identities=15%  Similarity=0.172  Sum_probs=110.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      +++||-+..++.|..++..   ..-...+.++|+.|+||||+|+.+.+...-....  ....     ...+..-.....+
T Consensus        16 ~dviGQe~vv~~L~~~l~~---~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-----~~pCg~C~~C~~i   87 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQ---QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT-----ATPCGVCQACRDI   87 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC-----CCCCCccHHHHHH
Confidence            6789999999999999864   2334677999999999999999997652111100  0000     0000000111111


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEEEEeCC-hHH
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLIITSRN-EKL  187 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~IIiTTR~-~~v  187 (398)
                      ...-..........+..+.+..+..+....    .++.-++|||+++  +....+.|...+..- ..+++|++|.+ ..+
T Consensus        88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki  167 (618)
T PRK14951         88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV  167 (618)
T ss_pred             HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence            100000000000001123333333332211    2345699999999  456666666666532 34556655544 455


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ...+......+++++++. ++....+.+.+...+...++   +.+..|++.++|-+..+..
T Consensus       168 l~TIlSRc~~~~f~~Ls~-eei~~~L~~i~~~egi~ie~---~AL~~La~~s~GslR~al~  224 (618)
T PRK14951        168 PVTVLSRCLQFNLRPMAP-ETVLEHLTQVLAAENVPAEP---QALRLLARAARGSMRDALS  224 (618)
T ss_pred             hHHHHHhceeeecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            544545678899999998 66777777665444433322   3567788888887766544

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.74  E-value=1.5e-07  Score=83.85  Aligned_cols=127  Identities=20%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c------------cceEEEEecCCc------ccH------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F------------VPRIWVCTMSGQ------KTA------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F------------~~~~~v~~v~~~------~~~------------  108 (398)
                      .-.+++|.|++|+|||||++.++..... ...  +            ....++   .+.      .+.            
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~---~q~~~~~~~~tv~e~l~~~~~~~~  101 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL---IEAPGFYPNLTARENLRLLARLLG  101 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe---cCCCccCccCcHHHHHHHHHHhcC
Confidence            4578999999999999999999754110 000  0            011111   111      011            


Q ss_pred             --HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEE
Q 015891          109 --ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLII  180 (398)
Q Consensus       109 --~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIi  180 (398)
                        ......+++.+++.... ......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||+
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~  181 (208)
T cd03268         102 IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI  181 (208)
T ss_pred             CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence              12234566666665421 223347899999999999999999999999999   4444444444443  124788999


Q ss_pred             EeCChHHHHHh
Q 015891          181 TSRNEKLTTEM  191 (398)
Q Consensus       181 TTR~~~v~~~~  191 (398)
                      +||+...+..+
T Consensus       182 ~tH~~~~~~~~  192 (208)
T cd03268         182 SSHLLSEIQKV  192 (208)
T ss_pred             EcCCHHHHHHh
Confidence            99999877664

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.73  E-value=1.6e-07  Score=90.90  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=83.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------ceEEEEe---cCCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------PRIWVCT---MSGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------~~~~v~~---v~~~~~----------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|+            .+.++..   +....+                
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~  107 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK  107 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence            35689999999999999999997642110 0  010            0111110   000000                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ......++++.+++... .......+++++++..+.+.|..++-+|+||++.   |....+.+...+.   ...+..|
T Consensus       108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv  187 (369)
T PRK11000        108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM  187 (369)
T ss_pred             HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence              11234566777777642 2233458999999999999999999999999999   4444444433332   2237889


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+.+.+..+++
T Consensus       188 I~vTHd~~~~~~~~d  202 (369)
T PRK11000        188 IYVTHDQVEAMTLAD  202 (369)
T ss_pred             EEEeCCHHHHHHhCC
Confidence            999999987766533

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.73  E-value=1.3e-07  Score=96.33  Aligned_cols=195  Identities=16%  Similarity=0.170  Sum_probs=109.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH-HH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR-IL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~-il  116 (398)
                      +++||.+..++.|..++..   ..-...+.++|+.|+||||+|+.+.+...-......   .. .........+-.. ..
T Consensus        16 ddIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~---~p-Cg~C~sCr~i~~g~~~   88 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG---EP-CGVCQSCTQIDAGRYV   88 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCC---CC-CcccHHHHHHhccCcc
Confidence            6789999999999999964   223567899999999999999999876211111000   00 0000000000000 00


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHH
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLT  188 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~  188 (398)
                      +.+.+..     ....+.+.++..+...    ..++..++|+||++.  ....+.|...+. ....+++|++|.+. .+.
T Consensus        89 DvlEida-----As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~  163 (709)
T PRK08691         89 DLLEIDA-----ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP  163 (709)
T ss_pred             ceEEEec-----cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence            0000000     0112223333333221    234567999999984  344455555554 23456677666553 343


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+.+....|++.+++. ++....+.+.+...+....+   +.+..|++.++|.+..+..
T Consensus       164 ~TIrSRC~~f~f~~Ls~-eeI~~~L~~Il~kEgi~id~---eAL~~Ia~~A~GslRdAln  219 (709)
T PRK08691        164 VTVLSRCLQFVLRNMTA-QQVADHLAHVLDSEKIAYEP---PALQLLGRAAAGSMRDALS  219 (709)
T ss_pred             hHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHcCCCcCH---HHHHHHHHHhCCCHHHHHH
Confidence            33334456788999998 66777777766554433322   3677888999998876654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.73  E-value=3.1e-08  Score=85.49  Aligned_cols=84  Identities=13%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~  202 (398)
                      ..++++++++-.+++.++-+|-+|++|++.+.      ...+.+...+.  ..-+|||.||+.+-+..+.+....+.++.
T Consensus       148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~  225 (253)
T COG1117         148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGE  225 (253)
T ss_pred             cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccE
Confidence            34899999999999999999999999999843      33333333332  56789999999988877765555566666


Q ss_pred             CCChhHHHHHHH
Q 015891          203 LSDQESCWLIYR  214 (398)
Q Consensus       203 L~~~e~~~~l~~  214 (398)
                      |-+......+|.
T Consensus       226 LvE~g~T~~iF~  237 (253)
T COG1117         226 LVEFGPTDKIFT  237 (253)
T ss_pred             EEEEcCHHhhhc
Confidence            665455556664

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.73  E-value=1.9e-07  Score=83.76  Aligned_cols=128  Identities=19%  Similarity=0.223  Sum_probs=82.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEec---CCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCTM---SGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~v---~~~~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|+                  .+.++..-   ....+          
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  108 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL  108 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence            45689999999999999999997542110 0  000                  11111100   00000          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                              .......++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ..
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~  188 (218)
T cd03255         109 LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK  188 (218)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                    11234566777777542 2223348899999999999999999999999999   4444444444443  12


Q ss_pred             -CCCEEEEEeCChHHHH
Q 015891          174 -YGERLIITSRNEKLTT  189 (398)
Q Consensus       174 -~gs~IIiTTR~~~v~~  189 (398)
                       .+..||++||+.....
T Consensus       189 ~~~~tii~~sH~~~~~~  205 (218)
T cd03255         189 EAGTTIVVVTHDPELAE  205 (218)
T ss_pred             hcCCeEEEEECCHHHHh
Confidence             4788999999988765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=2e-07  Score=87.25  Aligned_cols=132  Identities=18%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc---------------eEEEEecCCcc-----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP---------------RIWVCTMSGQK-----------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~---------------~~~v~~v~~~~-----------------  106 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .|+.               ...+.++.+..                 
T Consensus        31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~  110 (288)
T PRK13643         31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP  110 (288)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence            45689999999999999999997541110 0  0000               00011111110                 


Q ss_pred             --------cHHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          107 --------TAESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       107 --------~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                              .......++++.+++..  ........+.+++++..+.+.+..++-+++||++.   |......+...+.  
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l  190 (288)
T PRK13643        111 QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI  190 (288)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence                    01123445566677742  23334458999999999999999999999999999   4444444443432  


Q ss_pred             CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...|.+||++||+.+.+..+++
T Consensus       191 ~~~g~til~vtHd~~~~~~~~d  212 (288)
T PRK13643        191 HQSGQTVVLVTHLMDDVADYAD  212 (288)
T ss_pred             HHCCCEEEEEecCHHHHHHhCC
Confidence            2247899999999987765433

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=1.6e-07  Score=90.08  Aligned_cols=132  Identities=16%  Similarity=0.229  Sum_probs=84.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEe---cCCccc-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCT---MSGQKT-----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~---v~~~~~-----------  107 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .|+                 .+.++..   +....+           
T Consensus        30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~  109 (343)
T PRK11153         30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL  109 (343)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence            45689999999999999999997642100 0  000                 0111110   000000           


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG  173 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~  173 (398)
                             .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.   ..
T Consensus       110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~  189 (343)
T PRK11153        110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE  189 (343)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence                   11234456777777543 2233458999999999999999999999999999   4444444444443   22


Q ss_pred             CCCEEEEEeCChHHHHHhcC
Q 015891          174 YGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~  193 (398)
                      .|.+||++||+.+.+..+++
T Consensus       190 ~g~tiilvtH~~~~i~~~~d  209 (343)
T PRK11153        190 LGLTIVLITHEMDVVKRICD  209 (343)
T ss_pred             cCCEEEEEeCCHHHHHHhCC
Confidence            37899999999988776543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.73  E-value=2e-07  Score=94.92  Aligned_cols=81  Identities=20%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891          112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEK  186 (398)
Q Consensus       112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~  186 (398)
                      ...++..+++...  .......+++++++..+++.+..++-+++||++.   |....+.+...+. ..+..||++||+..
T Consensus       135 ~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~-~~~~tiiivsHd~~  213 (530)
T PRK15064        135 AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN-ERNSTMIIISHDRH  213 (530)
T ss_pred             HHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCCeEEEEeCCHH
Confidence            3456667777542  1233458999999999999999999999999999   4455555555553 24678999999998


Q ss_pred             HHHHhcC
Q 015891          187 LTTEMVG  193 (398)
Q Consensus       187 v~~~~~~  193 (398)
                      .+..+++
T Consensus       214 ~~~~~~d  220 (530)
T PRK15064        214 FLNSVCT  220 (530)
T ss_pred             HHHhhcc
Confidence            8766543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.73  E-value=1.8e-07  Score=85.04  Aligned_cols=137  Identities=15%  Similarity=0.129  Sum_probs=84.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-------------ceEEEE-e---cCCcccH-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-------------PRIWVC-T---MSGQKTA-------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-------------~~~~v~-~---v~~~~~~-------------  108 (398)
                      .-.+++|.|++|+|||||++.++..... ...  |+             ...++. .   +....+.             
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~  125 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL  125 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence            4578999999999999999999764210 000  00             011110 0   0000011             


Q ss_pred             -----HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCC
Q 015891          109 -----ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGE  176 (398)
Q Consensus       109 -----~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs  176 (398)
                           ......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+.
T Consensus       126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  205 (236)
T cd03267         126 PPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT  205 (236)
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence                 1122345566666432 2222347899999999999999999999999999   4444444444443   22478


Q ss_pred             EEEEEeCChHHHHHhcCCCceEEc
Q 015891          177 RLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .||++||+...+..++  ++++.+
T Consensus       206 tiiivsH~~~~~~~~~--d~i~~l  227 (236)
T cd03267         206 TVLLTSHYMKDIEALA--RRVLVI  227 (236)
T ss_pred             EEEEEecCHHHHHHhC--CEEEEE
Confidence            9999999998776643  344444

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.72  E-value=2.6e-07  Score=85.83  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=83.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc--------eEEEEecCCc-------------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP--------RIWVCTMSGQ-------------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~--------~~~v~~v~~~-------------------------  105 (398)
                      .-.+++|+|++|+|||||++.+...... ...  |+.        ...+.++.+.                         
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~  111 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW  111 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccc
Confidence            4568999999999999999999754210 000  100        0001111110                         


Q ss_pred             -----ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          106 -----KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       106 -----~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                           .........+++.+++... .......+.+++++..+.+++..++-++++|++.   |....+.+...+.  ...
T Consensus       112 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~  191 (272)
T PRK15056        112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE  191 (272)
T ss_pred             ccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence                 0012234556677777542 2223348899999999999999999999999999   4444444444443  224


Q ss_pred             CCEEEEEeCChHHHHHhcC
Q 015891          175 GERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~  193 (398)
                      |..||++||+.+.+..+++
T Consensus       192 g~tviivsH~~~~~~~~~d  210 (272)
T PRK15056        192 GKTMLVSTHNLGSVTEFCD  210 (272)
T ss_pred             CCEEEEEeCCHHHHHHhCC
Confidence            7789999999877665433

>PRK10908 cell division protein FtsE; Provisional

Probab=98.72  E-value=5.4e-08  Score=87.62  Aligned_cols=138  Identities=14%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccce--------------EEEEecCCcc------cH---------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPR--------------IWVCTMSGQK------TA---------  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~--------------~~v~~v~~~~------~~---------  108 (398)
                      ..-.+++|+|++|+|||||++.++..... ...  |+..              ..+.++.+..      +.         
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  105 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI  105 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence            35678999999999999999999754210 000  1000              0011111110      00         


Q ss_pred             ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                               ......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ..
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  185 (222)
T PRK10908        106 IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR  185 (222)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence                     1112355666666542 2223458899999999999999999999999999   4444344443333  23


Q ss_pred             CCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          174 YGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .+..||++||+.+....++  ++++.+
T Consensus       186 ~~~tiii~sH~~~~~~~~~--d~i~~l  210 (222)
T PRK10908        186 VGVTVLMATHDIGLISRRS--YRMLTL  210 (222)
T ss_pred             CCCEEEEEeCCHHHHHHhC--CEEEEE
Confidence            4789999999998777643  344444

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.72  E-value=3.3e-07  Score=81.49  Aligned_cols=128  Identities=17%  Similarity=0.210  Sum_probs=80.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------------ceEEEEec---CCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------------PRIWVCTM---SGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------------~~~~v~~v---~~~~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+                  ...++..-   ....+          
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~  102 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK  102 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence            3468999999999999999999764210 00  000                  01111100   00001          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                              ..+....+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ..
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  182 (206)
T TIGR03608       103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND  182 (206)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence                    11223456777776442 2223448899999999999999999999999999   4444444444443  22


Q ss_pred             CCCEEEEEeCChHHHH
Q 015891          174 YGERLIITSRNEKLTT  189 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~  189 (398)
                      .+..||++||+.....
T Consensus       183 ~~~tii~~sh~~~~~~  198 (206)
T TIGR03608       183 EGKTIIIVTHDPEVAK  198 (206)
T ss_pred             cCCEEEEEeCCHHHHh
Confidence            4789999999987654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.72  E-value=2e-07  Score=84.73  Aligned_cols=136  Identities=17%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce----------EEEEecCCcc------c---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR----------IWVCTMSGQK------T---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~----------~~v~~v~~~~------~---------------  107 (398)
                      .-.+++|+|++|+|||||++.++..... ..  .++..          ..+.++.+..      +               
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~  105 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS  105 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence            4578999999999999999999754210 00  01000          0011111110      0               


Q ss_pred             ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891          108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~  177 (398)
                         .......+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...|..
T Consensus       106 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t  185 (236)
T TIGR03864       106 RAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS  185 (236)
T ss_pred             HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence               11123456666776542 2223348899999999999999999999999998   4444444444443   124788


Q ss_pred             EEEEeCChHHHHHhcCCCceEEc
Q 015891          178 LIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       178 IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ||++||+.+.+..   .++++.+
T Consensus       186 iii~sH~~~~~~~---~d~i~~l  205 (236)
T TIGR03864       186 VLWATHLVDEIEA---DDRLVVL  205 (236)
T ss_pred             EEEEecChhhHhh---CCEEEEE
Confidence            9999999987753   3445554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.72  E-value=3.4e-07  Score=82.30  Aligned_cols=136  Identities=15%  Similarity=0.248  Sum_probs=85.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cc------------------cceEEEEec---CCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QF------------------VPRIWVCTM---SGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F------------------~~~~~v~~v---~~~~~----------  107 (398)
                      .-.+++|.|++|+|||||++.++..... ..  .|                  ....++..-   ....+          
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  109 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL  109 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence            4568999999999999999999764110 00  00                  011222100   00001          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              ......+++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~  189 (221)
T TIGR02211       110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR  189 (221)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence                    01123456677777542 2223458999999999999999999999999999   4444444444443   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          173 GYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+..||++||+......+   ++++.+
T Consensus       190 ~~~~tii~~tH~~~~~~~~---d~v~~l  214 (221)
T TIGR02211       190 ELNTSFLVVTHDLELAKKL---DRVLEM  214 (221)
T ss_pred             hcCCEEEEEeCCHHHHhhc---CEEEEE
Confidence            2467899999998876542   445554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.72  E-value=1.3e-07  Score=90.99  Aligned_cols=132  Identities=13%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---c--ccc------------eEEEEe---------cCCc---------c
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---Q--FVP------------RIWVCT---------MSGQ---------K  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~--F~~------------~~~v~~---------v~~~---------~  106 (398)
                      .-.+++|+|++|+|||||.+.++.-.....   .  |+.            +.++..         +.++         .
T Consensus        30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~  109 (362)
T TIGR03258        30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM  109 (362)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence            346899999999999999999986421111   0  110            111100         0000         0


Q ss_pred             ---cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC-C
Q 015891          107 ---TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY-G  175 (398)
Q Consensus       107 ---~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~-g  175 (398)
                         ........+++.+++... .......+.+++++..+.+.|..++-+++||++.   |....+.+...+.   ... |
T Consensus       110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g  189 (362)
T TIGR03258       110 PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE  189 (362)
T ss_pred             CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence               112234567777777653 2334458999999999999999999999999998   4433333433332   222 7


Q ss_pred             CEEEEEeCChHHHHHhcC
Q 015891          176 ERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~~~  193 (398)
                      ..+|++||+...+..+++
T Consensus       190 ~til~vTHd~~ea~~l~d  207 (362)
T TIGR03258       190 LTILCVTHDQDDALTLAD  207 (362)
T ss_pred             CEEEEEeCCHHHHHHhCC
Confidence            899999999988766544

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.72  E-value=1.6e-07  Score=96.19  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCc------ccH-------------HHHHHHHHHHcCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQ------KTA-------------ESIVKRILKRLGV  121 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~------~~~-------------~~~~~~il~~l~~  121 (398)
                      .-.+++|+|++|+|||||++.++....-. .......-+.++.+.      .+.             .....+++..+++
T Consensus       364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l  443 (590)
T PRK13409        364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL  443 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence            45689999999999999999998752111 110000112212221      111             1223556777777


Q ss_pred             CCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891          122 DDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       122 ~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ... .......+++++++..+++++..++-+++||++.   |......+...+.   ...+..||++||+...+..++  
T Consensus       444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a--  521 (590)
T PRK13409        444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS--  521 (590)
T ss_pred             HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence            542 2333458999999999999999999999999999   4444444444443   224788999999998887753  


Q ss_pred             CceEEcC
Q 015891          195 ENLHQLQ  201 (398)
Q Consensus       195 ~~~~~l~  201 (398)
                      ++++.+.
T Consensus       522 Drvivl~  528 (590)
T PRK13409        522 DRLMVFE  528 (590)
T ss_pred             CEEEEEc
Confidence            3455554

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.72  E-value=2.3e-07  Score=94.68  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=110.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+..++.|...+..   ..-...+.++|+.|+||||+|+.+++.  +.....    .  ....+..-.....+..
T Consensus        16 ~divGQe~vv~~L~~~l~~---~rl~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~----~--~~~pCg~C~~C~~i~~   84 (647)
T PRK07994         16 AEVVGQEHVLTALANALDL---GRLHHAYLFSGTRGVGKTTIARLLAKG--LNCETG----I--TATPCGECDNCREIEQ   84 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHh--hhhccC----C--CCCCCCCCHHHHHHHc
Confidence            6789999999999999864   223456789999999999999999876  221100    0  0000000011111110


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~~  189 (398)
                      .-..+.......+....+..+..+...    ..++..++|+|+++  +....+.|...+-. ....++|++|.+ ..+..
T Consensus        85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~  164 (647)
T PRK07994         85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  164 (647)
T ss_pred             CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence            000000000000012233333322221    23466799999999  45666666666642 235555555544 44554


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      .+......|.+.+|+. +.....+.+.+...+....   ......|++.++|.+..+..+
T Consensus       165 TI~SRC~~~~f~~Ls~-~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l  220 (647)
T PRK07994        165 TILSRCLQFHLKALDV-EQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL  220 (647)
T ss_pred             HHHhhheEeeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence            4445578999999999 6677677665533222211   235677888999988766544

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.72  E-value=1.9e-07  Score=93.72  Aligned_cols=196  Identities=15%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||-+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-...+...   . .....    ....+..
T Consensus        16 ~divGq~~v~~~L~~~~~~---~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~---p-Cg~C~----~C~~i~~   84 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQ---QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN---P-CNDCE----NCREIDE   84 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHh---CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc---c-CCCCH----HHHHHhc
Confidence            6789999999999999964   2234567899999999999999998762111111100   0 00000    0000000


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~~  189 (398)
                      .-..+.......+..+.+..+..+...    ..++..++|+|+++  +....+.|...+.. ...+++|++|.+ ..+..
T Consensus        85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~  164 (509)
T PRK14958         85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV  164 (509)
T ss_pred             CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence            000000000000012233323222211    12455799999999  45566666666653 245666665544 34444


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+......+++.+++. ++....+.+.+...+....+   +.+..|++.++|-+..+..
T Consensus       165 tI~SRc~~~~f~~l~~-~~i~~~l~~il~~egi~~~~---~al~~ia~~s~GslR~al~  219 (509)
T PRK14958        165 TVLSRCLQFHLAQLPP-LQIAAHCQHLLKEENVEFEN---AALDLLARAANGSVRDALS  219 (509)
T ss_pred             HHHHHhhhhhcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence            4444567889999998 55655555554433333222   2566788888888866543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.72  E-value=2.3e-07  Score=82.92  Aligned_cols=131  Identities=14%  Similarity=0.121  Sum_probs=82.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEecC---Cccc---------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCTMS---GQKT---------------  107 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~v~---~~~~---------------  107 (398)
                      ..-.+++|.|++|+|||||++.++...... .  .|+.            ..++..-.   ...+               
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~  101 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL  101 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence            356789999999999999999997652110 0  0100            11111000   0000               


Q ss_pred             ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891          108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~  177 (398)
                         ......++++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+..
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t  181 (213)
T TIGR01277       102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT  181 (213)
T ss_pred             cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence               11223456666776532 2223358899999999999999999999999999   4444444444443   224789


Q ss_pred             EEEEeCChHHHHHh
Q 015891          178 LIITSRNEKLTTEM  191 (398)
Q Consensus       178 IIiTTR~~~v~~~~  191 (398)
                      ||++||+......+
T Consensus       182 ii~vsh~~~~~~~~  195 (213)
T TIGR01277       182 LLMVTHHLSDARAI  195 (213)
T ss_pred             EEEEeCCHHHHHhh
Confidence            99999998876554

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.72  E-value=3.4e-07  Score=84.39  Aligned_cols=82  Identities=11%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..++++.+++...  .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       132 ~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~  211 (257)
T PRK10619        132 AVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE  211 (257)
T ss_pred             HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3456777777543  2334458999999999999999999999999999   4444444444433  2247899999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      ...+..+++
T Consensus       212 ~~~~~~~~d  220 (257)
T PRK10619        212 MGFARHVSS  220 (257)
T ss_pred             HHHHHHhcC
Confidence            988776433

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.71  E-value=2.6e-07  Score=88.93  Aligned_cols=132  Identities=15%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce---------------EEEEecCCc------cc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR---------------IWVCTMSGQ------KT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~---------------~~v~~v~~~------~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|+..               ..+.++.+.      .+          
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  102 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA  102 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence            34689999999999999999997642110 0  01000               001111111      01          


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ......++++.+++... .......+++++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..|
T Consensus       103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti  182 (352)
T PRK11144        103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI  182 (352)
T ss_pred             hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence              11234567777887642 2333458999999999999999999999999999   4444444443332   2237789


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       183 i~vTHd~~~~~~~~d  197 (352)
T PRK11144        183 LYVSHSLDEILRLAD  197 (352)
T ss_pred             EEEecCHHHHHHhCC
Confidence            999999987766543

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.71  E-value=1.6e-07  Score=85.74  Aligned_cols=131  Identities=16%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-----------eEEEEecCCc------cc--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-----------RIWVCTMSGQ------KT--------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-----------~~~v~~v~~~------~~--------------  107 (398)
                      .-.+++|+|++|+|||||++.++...... .  .|+.           ...+.++.+.      .+              
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  105 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW  105 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence            45689999999999999999997642110 0  0100           0011111111      00              


Q ss_pred             ----HHHHHHHHHHHcCCCC---CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891          108 ----AESIVKRILKRLGVDD---GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY  174 (398)
Q Consensus       108 ----~~~~~~~il~~l~~~~---~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~  174 (398)
                          ......++++.+++..   ........+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...
T Consensus       106 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~  185 (242)
T cd03295         106 PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL  185 (242)
T ss_pred             CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc
Confidence                0123456677777763   22333458899999999999999999999999999   4444444444443   123


Q ss_pred             CCEEEEEeCChHHHHHhc
Q 015891          175 GERLIITSRNEKLTTEMV  192 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~  192 (398)
                      |..||++||+...+..++
T Consensus       186 g~tvii~sH~~~~~~~~~  203 (242)
T cd03295         186 GKTIVFVTHDIDEAFRLA  203 (242)
T ss_pred             CCEEEEEecCHHHHHHhC
Confidence            788999999988666543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=1.5e-07  Score=90.23  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=84.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc------------eEEEEe---------cCCc------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP------------RIWVCT---------MSGQ------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~------------~~~v~~---------v~~~------------  105 (398)
                      .-.+++|.|++|+|||||++.++.-.....   .|+.            +.++..         +.++            
T Consensus        31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~  110 (351)
T PRK11432         31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK  110 (351)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence            456899999999999999999975421110   0110            111100         0000            


Q ss_pred             ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          106 KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                      ....+....+++.+++... .......+++++++..+.+.|..++-+++||++.   |....+.+...+.   ...+..+
T Consensus       111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti  190 (351)
T PRK11432        111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITS  190 (351)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            0112344566777777543 2334458999999999999999999999999998   4443344443332   2347899


Q ss_pred             EEEeCChHHHHHhcCC
Q 015891          179 IITSRNEKLTTEMVGE  194 (398)
Q Consensus       179 IiTTR~~~v~~~~~~~  194 (398)
                      |++||+...+..+++.
T Consensus       191 i~vTHd~~e~~~laD~  206 (351)
T PRK11432        191 LYVTHDQSEAFAVSDT  206 (351)
T ss_pred             EEEcCCHHHHHHhCCE
Confidence            9999999887665443

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=9.6e-08  Score=86.60  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=82.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------ceEEEEe---cCCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------PRIWVCT---MSGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------~~~~v~~---v~~~~~----------------  107 (398)
                      .-.+++|+|++|+|||||++.+..-... ..  .|+            ...++..   +....+                
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  103 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN  103 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence            4678999999999999999999654110 00  000            0111110   000000                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ......++++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...|..|
T Consensus       104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti  183 (232)
T PRK10771        104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL  183 (232)
T ss_pred             HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              11224556667776532 2233358999999999999999999999999998   4444444444432   2237899


Q ss_pred             EEEeCChHHHHHhc
Q 015891          179 IITSRNEKLTTEMV  192 (398)
Q Consensus       179 IiTTR~~~v~~~~~  192 (398)
                      |++||+...+..++
T Consensus       184 ii~sH~~~~~~~~~  197 (232)
T PRK10771        184 LMVSHSLEDAARIA  197 (232)
T ss_pred             EEEECCHHHHHHhC
Confidence            99999998776643

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.71  E-value=2e-07  Score=82.44  Aligned_cols=131  Identities=16%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--------------cc-cceEEEEe---cCCcccH-------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--------------QF-VPRIWVCT---MSGQKTA-------------  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--------------~F-~~~~~v~~---v~~~~~~-------------  108 (398)
                      ..-.+++|+|++|+|||||++.+...... ..              .+ ....|+..   .....+.             
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~  104 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG  104 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcc
Confidence            35678999999999999999999765211 00              00 01112110   0001111             


Q ss_pred             HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891          109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS  182 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT  182 (398)
                      ......+++.+++... .......+.++.++..+.+.+..++-++++|++.   |....+.+...+.  ...+..||+||
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s  184 (200)
T PRK13540        105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS  184 (200)
T ss_pred             hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            1124556666666432 2222347899999999999999999999999998   4444445544443  23478899999


Q ss_pred             CChHHHHHh
Q 015891          183 RNEKLTTEM  191 (398)
Q Consensus       183 R~~~v~~~~  191 (398)
                      |+......+
T Consensus       185 h~~~~~~~~  193 (200)
T PRK13540        185 HQDLPLNKA  193 (200)
T ss_pred             CCchhcccc
Confidence            998776653

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.71  E-value=1.1e-07  Score=81.88  Aligned_cols=122  Identities=18%  Similarity=0.199  Sum_probs=74.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC-cccHHHHHHHHHHHcCC--CCCCC---CCcC--CCc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-QKTAESIVKRILKRLGV--DDGTT---NSFE--GQG  133 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~l~~--~~~~~---~~~~--~~~  133 (398)
                      .-.+++|.|++|+|||||++.++.-  . ....+.+++....- ......    ....++.  .....   ...+  .+.
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~   99 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG   99 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence            4578999999999999999999886  2 22334444331100 000111    0111110  00000   0000  577


Q ss_pred             hHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          134 LAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       134 ~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                      +++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......
T Consensus       100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  160 (171)
T cd03228         100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD  160 (171)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence            8899999999999999999999999   4444444444432 2235789999999887754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.71  E-value=3.6e-07  Score=83.79  Aligned_cols=81  Identities=12%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891          113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK  186 (398)
Q Consensus       113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~  186 (398)
                      ..++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+..
T Consensus       126 ~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~  205 (250)
T PRK11264        126 RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS  205 (250)
T ss_pred             HHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            445666676542 2223348899999999999999999999999999   4444444444332  224778999999988


Q ss_pred             HHHHhcC
Q 015891          187 LTTEMVG  193 (398)
Q Consensus       187 v~~~~~~  193 (398)
                      .+..+++
T Consensus       206 ~~~~~~d  212 (250)
T PRK11264        206 FARDVAD  212 (250)
T ss_pred             HHHHhcC
Confidence            7766433

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=3.8e-07  Score=83.18  Aligned_cols=131  Identities=18%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc-----------eEEEEecCCcc-----c--------------H
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP-----------RIWVCTMSGQK-----T--------------A  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-----------~~~v~~v~~~~-----~--------------~  108 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  |+.           ...+.++.+..     +              .
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~  107 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK  107 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcH
Confidence            3568999999999999999999764210 000  100           00011111110     0              0


Q ss_pred             HHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEE
Q 015891          109 ESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLII  180 (398)
Q Consensus       109 ~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIi  180 (398)
                      ......+++.+++..  ........+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||+
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~  187 (241)
T PRK14250        108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW  187 (241)
T ss_pred             HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            122345667777752  22333458899999999999999999999999999   4444444444443   123789999


Q ss_pred             EeCChHHHHHhc
Q 015891          181 TSRNEKLTTEMV  192 (398)
Q Consensus       181 TTR~~~v~~~~~  192 (398)
                      +||+.+.+..++
T Consensus       188 ~sH~~~~~~~~~  199 (241)
T PRK14250        188 ITHNMEQAKRIG  199 (241)
T ss_pred             EeccHHHHHHhC
Confidence            999998776643

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.71  E-value=2.6e-07  Score=85.74  Aligned_cols=131  Identities=15%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------------ceEEEEe---cCCcccH---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------------PRIWVCT---MSGQKTA---------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------------~~~~v~~---v~~~~~~---------  108 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+                  .+.++..   +....+.         
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  128 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE  128 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence            4578999999999999999999764211 00  010                  0111110   0000011         


Q ss_pred             ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                               .....++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~  208 (269)
T cd03294         129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA  208 (269)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence                     1123456667777542 2233458999999999999999999999999999   4444444444432   2


Q ss_pred             CCCCEEEEEeCChHHHHHhc
Q 015891          173 GYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..|..||++||+.+.+..++
T Consensus       209 ~~g~tiii~tH~~~~~~~~~  228 (269)
T cd03294         209 ELQKTIVFITHDLDEALRLG  228 (269)
T ss_pred             hcCCEEEEEeCCHHHHHHhc
Confidence            23789999999988765543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.71  E-value=7.2e-08  Score=87.64  Aligned_cols=81  Identities=16%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ..++++.+++.... ......+.+++++..+.+.+..++-++++|++.   |......+...+.  ...|..||++||+.
T Consensus       124 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~  203 (236)
T cd03219         124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM  203 (236)
T ss_pred             HHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence            44566667765422 223348899999999999999999999999999   4444444444432  12577899999999


Q ss_pred             HHHHHhc
Q 015891          186 KLTTEMV  192 (398)
Q Consensus       186 ~v~~~~~  192 (398)
                      ..+..++
T Consensus       204 ~~~~~~~  210 (236)
T cd03219         204 DVVMSLA  210 (236)
T ss_pred             HHHHHhC
Confidence            8876653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.71  E-value=2.8e-07  Score=88.62  Aligned_cols=132  Identities=20%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccceEE---------EEecCCc------------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPRIW---------VCTMSGQ------------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~---------v~~v~~~------------------------  105 (398)
                      .-.+++|.|++|+|||||.+.++.-.....   .|+...+         +.++.+.                        
T Consensus        29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~  108 (353)
T TIGR03265        29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR  108 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence            356899999999999999999976521110   0111000         0001110                        


Q ss_pred             ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          106 KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                      ........++++.+++.... ......+++++++..+.+.|..++-+++||++.   |....+.+...+.   ...+..+
T Consensus       109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv  188 (353)
T TIGR03265       109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT  188 (353)
T ss_pred             HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            01123456677888876532 233458999999999999999999999999998   4433333433332   2347899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       189 i~vTHd~~ea~~l~d  203 (353)
T TIGR03265       189 IMVTHDQEEALSMAD  203 (353)
T ss_pred             EEEcCCHHHHHHhCC
Confidence            999999987766544

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.70  E-value=1.6e-07  Score=90.83  Aligned_cols=132  Identities=16%  Similarity=0.186  Sum_probs=84.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccceEE---------EEecCCc---------------------c--
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPRIW---------VCTMSGQ---------------------K--  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~~~---------v~~v~~~---------------------~--  106 (398)
                      .-.+++|.|++|+|||||.+.++.-.... .  .|+..-+         +.++.+.                     .  
T Consensus        39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~  118 (375)
T PRK09452         39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA  118 (375)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence            45689999999999999999997542110 0  0111000         0001110                     0  


Q ss_pred             -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                       .......++++.+++... ...+...+++++++..+.+.|..++-+++||++.   |....+.+...+.   ...+..+
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ti  198 (375)
T PRK09452        119 AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITF  198 (375)
T ss_pred             HHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence             012234566777777642 2233458999999999999999999999999998   4444444444443   2347899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       199 I~vTHd~~ea~~laD  213 (375)
T PRK09452        199 VFVTHDQEEALTMSD  213 (375)
T ss_pred             EEEeCCHHHHHHhCC
Confidence            999999987766543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.70  E-value=7.3e-08  Score=92.59  Aligned_cols=132  Identities=17%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEe---------cCC-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCT---------MSG-------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~---------v~~-------------  104 (398)
                      .-.+++|.|++|+|||||++.++.-.... .  .|+.            ..++..         +.+             
T Consensus        27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~  106 (353)
T PRK10851         27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE  106 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence            34689999999999999999997642110 0  0100            111100         000             


Q ss_pred             ccc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891          105 QKT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY  174 (398)
Q Consensus       105 ~~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~  174 (398)
                      ..+   ......++++.+++... .......+++++++..+.+.|..++-+++||++.   |....+.+...+.   ...
T Consensus       107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~  186 (353)
T PRK10851        107 RPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL  186 (353)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            001   12345567777777542 2334458999999999999999999999999998   4444444443332   234


Q ss_pred             CCEEEEEeCChHHHHHhcC
Q 015891          175 GERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~  193 (398)
                      +..+|++||+...+..+++
T Consensus       187 g~tii~vTHd~~ea~~~~D  205 (353)
T PRK10851        187 KFTSVFVTHDQEEAMEVAD  205 (353)
T ss_pred             CCEEEEEeCCHHHHHHhCC
Confidence            7899999999988777644

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1.7e-07  Score=90.76  Aligned_cols=132  Identities=14%  Similarity=0.170  Sum_probs=83.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc------------eEEEEe---------cCCc---------c--
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP------------RIWVCT---------MSGQ---------K--  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~------------~~~v~~---------v~~~---------~--  106 (398)
                      .-.+++|.|++|+|||||.+.++.-.....   .|+.            +.++..         +.++         .  
T Consensus        44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~  123 (377)
T PRK11607         44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK  123 (377)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence            456899999999999999999975421100   0110            111100         0000         0  


Q ss_pred             -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                       .......++++.+++... .......+++++++..|.+.|..++-+|+||++.   |....+.+...+.   ...|..+
T Consensus       124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti  203 (377)
T PRK11607        124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC  203 (377)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence             012234567777777643 2333458999999999999999999999999998   3433333332221   2347899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       204 i~vTHd~~ea~~laD  218 (377)
T PRK11607        204 VMVTHDQEEAMTMAG  218 (377)
T ss_pred             EEEcCCHHHHHHhCC
Confidence            999999987766544

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=3e-07  Score=87.72  Aligned_cols=83  Identities=12%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             HHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          112 VKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       112 ~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      ..++++.+++...    ...+...+++++++..+.+.|..++-+||+|++.   |......+...+.   ...|..||++
T Consensus       136 ~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~i  215 (330)
T PRK15093        136 AIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI  215 (330)
T ss_pred             HHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3456777777642    2334468999999999999999999999999999   3333333333332   2347899999


Q ss_pred             eCChHHHHHhcCC
Q 015891          182 SRNEKLTTEMVGE  194 (398)
Q Consensus       182 TR~~~v~~~~~~~  194 (398)
                      ||+..++..+++.
T Consensus       216 tHdl~~v~~~~dr  228 (330)
T PRK15093        216 SHDLQMLSQWADK  228 (330)
T ss_pred             ECCHHHHHHhCCE
Confidence            9999888775443

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.70  E-value=2.9e-07  Score=81.91  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=87.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-----------eEEEEecC---CcccH--------------H
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-----------RIWVCTMS---GQKTA--------------E  109 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-----------~~~v~~v~---~~~~~--------------~  109 (398)
                      ..-.+++|+|++|+|||||++.+....... .  .|+.           ..|+..-.   ...+.              .
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~  105 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE  105 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence            346789999999999999999997652110 0  0110           11221000   00011              1


Q ss_pred             HHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          110 SIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       110 ~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ....++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH  185 (207)
T PRK13539        106 LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH  185 (207)
T ss_pred             HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            124556666776532 2223347899999999999999999999999999   4444444444443  234788999999


Q ss_pred             ChHHHHHhcCCCceEEcCCCC
Q 015891          184 NEKLTTEMVGEENLHQLQPLS  204 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l~~L~  204 (398)
                      +......    .+++.+++..
T Consensus       186 ~~~~~~~----~~~~~~~~~~  202 (207)
T PRK13539        186 IPLGLPG----ARELDLGPFA  202 (207)
T ss_pred             Cchhhcc----CcEEeecCcc
Confidence            9876553    5667776644

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.70  E-value=2.2e-07  Score=83.55  Aligned_cols=131  Identities=16%  Similarity=0.228  Sum_probs=79.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c---------------cceEEEEec---CCcccH------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F---------------VPRIWVCTM---SGQKTA------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F---------------~~~~~v~~v---~~~~~~------------  108 (398)
                      .-.+++|+|++|+|||||++.+..-... ...  +               ..+.++..-   ....+.            
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~  104 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR  104 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence            4579999999999999999999654110 000  0               001121100   000011            


Q ss_pred             ----HHHHHHHHHHc-CCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCE
Q 015891          109 ----ESIVKRILKRL-GVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGER  177 (398)
Q Consensus       109 ----~~~~~~il~~l-~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~  177 (398)
                          ......+++.+ ++... .......+.+++++..+.+.+..++-++++|++.   |....+.+...+.  ...+..
T Consensus       105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  184 (222)
T cd03224         105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT  184 (222)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence                11223444544 23221 2222347889999999999999999999999999   4444444444443  225789


Q ss_pred             EEEEeCChHHHHHhc
Q 015891          178 LIITSRNEKLTTEMV  192 (398)
Q Consensus       178 IIiTTR~~~v~~~~~  192 (398)
                      ||++||+......++
T Consensus       185 iii~sH~~~~~~~~~  199 (222)
T cd03224         185 ILLVEQNARFALEIA  199 (222)
T ss_pred             EEEEeCCHHHHHHhc
Confidence            999999988766543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.70  E-value=3.4e-07  Score=81.83  Aligned_cols=137  Identities=16%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc----------------ceEEEEecC---Cccc------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV----------------PRIWVCTMS---GQKT------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~----------------~~~~v~~v~---~~~~------------  107 (398)
                      .-.+++|.|++|+|||||++.++.-... ..  .++                ...++..-.   ...+            
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~  104 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV  104 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence            4568999999999999999999764211 00  000                011111000   0000            


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                             ..+....+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~  184 (213)
T cd03262         105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE  184 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc
Confidence                   01123455666666542 2233458899999999999999999999999999   4444444444443  124


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      |..||++||+......++  ++++.+
T Consensus       185 ~~tvi~~sh~~~~~~~~~--d~i~~l  208 (213)
T cd03262         185 GMTMVVVTHEMGFAREVA--DRVIFM  208 (213)
T ss_pred             CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence            778999999988776543  344444

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=3.3e-07  Score=85.55  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ..+++.+++..  ........+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||+.
T Consensus       126 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~  205 (280)
T PRK13649        126 REKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM  205 (280)
T ss_pred             HHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence            34556667752  23333458899999999999999999999999999   4444444444433  22478999999998


Q ss_pred             HHHHHh
Q 015891          186 KLTTEM  191 (398)
Q Consensus       186 ~v~~~~  191 (398)
                      ..+..+
T Consensus       206 ~~~~~~  211 (280)
T PRK13649        206 DDVANY  211 (280)
T ss_pred             HHHHHh
Confidence            877654

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=4.9e-08  Score=92.87  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=85.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEecCCcc--------c------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCTMSGQK--------T------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~v~~~~--------~------  107 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .|+                 .+.++   .+..        .      
T Consensus        40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v---~Q~~~~~l~p~~~v~~~l~  116 (327)
T PRK11308         40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV---FQNPYGSLNPRKKVGQILE  116 (327)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEE---EcCchhhcCCccCHHHHHH
Confidence            45689999999999999999997642110 0  010                 01111   1110        1      


Q ss_pred             -------------HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH
Q 015891          108 -------------AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV  169 (398)
Q Consensus       108 -------------~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~  169 (398)
                                   ......++++.+++..  ........++++.++..+.+.|..++-+||+|++.   |......+...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~l  196 (327)
T PRK11308        117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNL  196 (327)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHH
Confidence                         1123456677777753  23344568999999999999999999999999999   33333333333


Q ss_pred             cC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891          170 LP---RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       170 l~---~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      +.   ...|..||++||+..++..+++.
T Consensus       197 L~~l~~~~g~til~iTHdl~~~~~~adr  224 (327)
T PRK11308        197 MMDLQQELGLSYVFISHDLSVVEHIADE  224 (327)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence            32   23478999999999988776443

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.70  E-value=1.9e-07  Score=84.13  Aligned_cols=130  Identities=17%  Similarity=0.157  Sum_probs=82.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce-------EEEEecCCc------ccH--------------HHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR-------IWVCTMSGQ------KTA--------------ESI  111 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~-------~~v~~v~~~------~~~--------------~~~  111 (398)
                      .-.+++|.|++|+|||||++.+...... ..  .|+..       ..+.++.+.      .+.              ...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~  104 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR  104 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence            4568999999999999999999764110 01  01000       001111111      111              123


Q ss_pred             HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ...+++.+++.... ......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+.
T Consensus       105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~  184 (223)
T TIGR03740       105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL  184 (223)
T ss_pred             HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34566667765422 222347889999999999999999999999998   4444444444443  23477899999999


Q ss_pred             HHHHHh
Q 015891          186 KLTTEM  191 (398)
Q Consensus       186 ~v~~~~  191 (398)
                      ..+..+
T Consensus       185 ~~~~~~  190 (223)
T TIGR03740       185 SEVQQL  190 (223)
T ss_pred             HHHHHh
Confidence            877654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.70  E-value=1e-06  Score=84.85  Aligned_cols=197  Identities=15%  Similarity=0.125  Sum_probs=110.5

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccce------EEEEecCCcccHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR------IWVCTMSGQKTAES  110 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~------~~v~~v~~~~~~~~  110 (398)
                      ..+++|.+...+.|.+.+..   ..-...+.++|+.|+||+|+|..+++...-.......      .-+. +.....   
T Consensus        18 ~~~iiGq~~~~~~L~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~---   90 (365)
T PRK07471         18 TTALFGHAAAEAALLDAYRS---GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHP---   90 (365)
T ss_pred             hhhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCCh---
Confidence            36799999999999999864   2335578999999999999999887651100100000      0000 000110   


Q ss_pred             HHHHHHHHcCCCC--------CCCC-C-cCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcCCC
Q 015891          111 IVKRILKRLGVDD--------GTTN-S-FEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLPRG  173 (398)
Q Consensus       111 ~~~~il~~l~~~~--------~~~~-~-~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~~  173 (398)
                      ..+.+. .-..++        .... . ...-.+++.+. +.+.+.     +.+.++|+||++  +....+.|...+..-
T Consensus        91 ~c~~i~-~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep  168 (365)
T PRK07471         91 VARRIA-AGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP  168 (365)
T ss_pred             HHHHHH-ccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence            111111 100000        0000 0 00112334332 333332     456799999999  556666666666533


Q ss_pred             -CCCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          174 -YGERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       174 -~gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                       .++.+|++|++. .+...+......+.+.+++. ++...++.+..+...    .   .....+++.++|.|+....+.
T Consensus       169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~-~~i~~~L~~~~~~~~----~---~~~~~l~~~s~Gsp~~Al~ll  239 (365)
T PRK07471        169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAP-EDVIDALAAAGPDLP----D---DPRAALAALAEGSVGRALRLA  239 (365)
T ss_pred             CCCeEEEEEECCchhchHHhhccceEEECCCCCH-HHHHHHHHHhcccCC----H---HHHHHHHHHcCCCHHHHHHHh
Confidence             356677777765 44444455678999999999 556666665443211    1   122567888999998766544

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.70  E-value=1.7e-07  Score=82.49  Aligned_cols=133  Identities=17%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC---------------------------CCccccceEEEEecC--Cc------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD---------------------------VKTQFVPRIWVCTMS--GQ------  105 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~---------------------------~~~~F~~~~~v~~v~--~~------  105 (398)
                      .+-.+++|.|++|+|||||.+.+....+                           +.--|+..+.++.++  .+      
T Consensus        32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr  111 (263)
T COG1127          32 PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR  111 (263)
T ss_pred             cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence            4567999999999999999999954310                           011122211111111  11      


Q ss_pred             -------ccHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHc
Q 015891          106 -------KTAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVL  170 (398)
Q Consensus       106 -------~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l  170 (398)
                             ....++...-++..|+...  ...+.+.+++...+..+++++.-.|-||++|++.   |+   ...+.|...+
T Consensus       112 e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L  191 (263)
T COG1127         112 EHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL  191 (263)
T ss_pred             hhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence                   1122333344556677654  3445668999999999999999999999999998   33   4444444455


Q ss_pred             CCCCCCEEEEEeCChHHHHHhcC
Q 015891          171 PRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       171 ~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...-|.++++.|||-+-+..+++
T Consensus       192 ~~~lg~T~i~VTHDl~s~~~i~D  214 (263)
T COG1127         192 NDALGLTVIMVTHDLDSLLTIAD  214 (263)
T ss_pred             HHhhCCEEEEEECChHHHHhhhc
Confidence            55568999999999877666544

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=3.8e-07  Score=85.44  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++..+++. . ........+.+++++..+.+.+..++-+|+||++.   |....+.+...+.  ...|..||++||+
T Consensus       125 ~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~  204 (287)
T PRK13641        125 ALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN  204 (287)
T ss_pred             HHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            35566677775 2 23334458999999999999999999999999999   4444444444443  2347899999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      .+.+..+++
T Consensus       205 ~~~~~~~~d  213 (287)
T PRK13641        205 MDDVAEYAD  213 (287)
T ss_pred             HHHHHHhCC
Confidence            987766533

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=3.8e-07  Score=83.21  Aligned_cols=79  Identities=13%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891          113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK  186 (398)
Q Consensus       113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~  186 (398)
                      ..+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||+..
T Consensus       123 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  202 (242)
T PRK11124        123 EKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE  202 (242)
T ss_pred             HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            445666666532 2223448899999999999999999999999999   4444444444443  234788999999998


Q ss_pred             HHHHh
Q 015891          187 LTTEM  191 (398)
Q Consensus       187 v~~~~  191 (398)
                      ....+
T Consensus       203 ~~~~~  207 (242)
T PRK11124        203 VARKT  207 (242)
T ss_pred             HHHHh
Confidence            77654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.69  E-value=2.9e-07  Score=94.21  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=54.5

Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhc
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      +..+++..........+++++++..+.+.+..++-+++||++.   |....+.+...+..-. ..||++||+.+.+..++
T Consensus       149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~tviiisHd~~~~~~~~  227 (556)
T PRK11819        149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-GTVVAVTHDRYFLDNVA  227 (556)
T ss_pred             HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-CeEEEEeCCHHHHHhhc
Confidence            3444443222333458999999999999999999999999999   4444445544544222 48999999998887754


Q ss_pred             C
Q 015891          193 G  193 (398)
Q Consensus       193 ~  193 (398)
                      +
T Consensus       228 d  228 (556)
T PRK11819        228 G  228 (556)
T ss_pred             C
Confidence            3

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.69  E-value=3.4e-07  Score=83.45  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ...++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++||+
T Consensus       125 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~  204 (241)
T cd03256         125 ALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ  204 (241)
T ss_pred             HHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3455666776532 2233458899999999999999999999999999   4444444444443   2237789999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      .+.+..++
T Consensus       205 ~~~~~~~~  212 (241)
T cd03256         205 VDLAREYA  212 (241)
T ss_pred             HHHHHHhC
Confidence            88777553

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.69  E-value=3e-07  Score=93.14  Aligned_cols=132  Identities=14%  Similarity=0.077  Sum_probs=84.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc---------------ceEEEEecC---Cccc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV---------------PRIWVCTMS---GQKT-------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~---------------~~~~v~~v~---~~~~-------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-..- ...  |+               .+.|+..-.   ...+             
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  115 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ  115 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence            4568999999999999999999764210 000  11               011221000   0001             


Q ss_pred             -HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEE
Q 015891          108 -AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLII  180 (398)
Q Consensus       108 -~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIi  180 (398)
                       .......++..+++... .......+.+++++..+.+.|..++-+++||++.   |....+.+...+.  ...|..||+
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii  195 (510)
T PRK15439        116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF  195 (510)
T ss_pred             HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence             12334567777887643 2223458999999999999999999999999999   4444444444332  234788999


Q ss_pred             EeCChHHHHHhcC
Q 015891          181 TSRNEKLTTEMVG  193 (398)
Q Consensus       181 TTR~~~v~~~~~~  193 (398)
                      +||+...+..+++
T Consensus       196 vtHd~~~~~~~~d  208 (510)
T PRK15439        196 ISHKLPEIRQLAD  208 (510)
T ss_pred             EeCCHHHHHHhCC
Confidence            9999887766433

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.69  E-value=3.7e-07  Score=82.48  Aligned_cols=136  Identities=19%  Similarity=0.241  Sum_probs=85.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEe---cCCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCT---MSGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~---v~~~~~----------  107 (398)
                      .-.+++|.|++|+|||||++.++.-.... .  .|+                  ...++..   +....+          
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~  114 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL  114 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence            45799999999999999999997652100 0  000                  1111110   000000          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  194 (228)
T PRK10584        115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR  194 (228)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                    01223456666776542 2233458899999999999999999999999999   4555555544443   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          173 GYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+..||++||+......   .++++.+
T Consensus       195 ~~~~tii~~sH~~~~~~~---~d~i~~l  219 (228)
T PRK10584        195 EHGTTLILVTHDLQLAAR---CDRRLRL  219 (228)
T ss_pred             hcCCEEEEEecCHHHHHh---CCEEEEE
Confidence            237799999999887643   2445554

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.69  E-value=7.1e-07  Score=94.00  Aligned_cols=194  Identities=11%  Similarity=0.078  Sum_probs=109.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .++||.+..++.|..++..   ..-...+.++|+.|+||||+|+.+.+...-.......   . +....+.    ..+..
T Consensus        15 ~eiiGqe~v~~~L~~~i~~---~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---p-Cg~C~sC----~~~~~   83 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDS---GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---P-CGECDSC----VALAP   83 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---C-CcccHHH----HHHHc
Confidence            5789999999999999964   2234568999999999999999998762111111000   0 0000000    00000


Q ss_pred             HcCCCCCCC---CCcCCCchHHHHHHHHH----HHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeC-ChH
Q 015891          118 RLGVDDGTT---NSFEGQGLAFLDYVLQQ----QLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSR-NEK  186 (398)
Q Consensus       118 ~l~~~~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR-~~~  186 (398)
                      . +....+.   ......+++..+....+    -...+..++|||+++  +....+.|...+.. ...+.+|++|. ...
T Consensus        84 g-~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k  162 (824)
T PRK07764         84 G-GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK  162 (824)
T ss_pred             C-CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence            0 0000000   00001223333332211    123456799999999  45666677777753 34555555554 445


Q ss_pred             HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      +...+....+.|++.+++. +....++.+.+...+...+.   +.+..|++.++|-+..+.
T Consensus       163 Ll~TIrSRc~~v~F~~l~~-~~l~~~L~~il~~EGv~id~---eal~lLa~~sgGdlR~Al  219 (824)
T PRK07764        163 VIGTIRSRTHHYPFRLVPP-EVMRGYLERICAQEGVPVEP---GVLPLVIRAGGGSVRDSL  219 (824)
T ss_pred             hhHHHHhheeEEEeeCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            6655556678999999988 66776777665444333222   255667888888775443

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=4.2e-07  Score=86.24  Aligned_cols=80  Identities=14%  Similarity=0.200  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++..+++..  ........+++++++..+.+.|..++-+|+||++.   |....+.+...+.  ...|.+||++||+
T Consensus       156 ~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd  235 (320)
T PRK13631        156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT  235 (320)
T ss_pred             HHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            345667777752  23334458999999999999999999999999999   4444444444432  2347899999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      .+.+...
T Consensus       236 ~~~~~~~  242 (320)
T PRK13631        236 MEHVLEV  242 (320)
T ss_pred             HHHHHHh
Confidence            8866543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.69  E-value=3.3e-07  Score=84.14  Aligned_cols=138  Identities=14%  Similarity=0.164  Sum_probs=86.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc-------------ccce----------------EEE-EecCCc-----
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ-------------FVPR----------------IWV-CTMSGQ-----  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~-------------F~~~----------------~~v-~~v~~~-----  105 (398)
                      .-.+++|+|++|+|||||++.++.-... ...             |+..                .++ .++...     
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  104 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVK  104 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHH
Confidence            4568999999999999999999765211 000             1110                010 000100     


Q ss_pred             ---------ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          106 ---------KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       106 ---------~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                               ........++++.+++.... ......+.+++++..+.+.+...+-+++||++.   |......+...+. 
T Consensus       105 ~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~  184 (255)
T cd03236         105 GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE  184 (255)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence                     01123456667777775422 223347889999999999999999999999999   4443333333332 


Q ss_pred             -CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          172 -RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                       ...+..||++||+.+.+..++  ++++.+.
T Consensus       185 l~~~~~tIIiiSHd~~~~~~~a--d~i~~l~  213 (255)
T cd03236         185 LAEDDNYVLVVEHDLAVLDYLS--DYIHCLY  213 (255)
T ss_pred             HHhcCCEEEEEECCHHHHHHhC--CEEEEEC
Confidence             123688999999998877643  3444443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=3.4e-07  Score=85.04  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             HHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHH
Q 015891          114 RILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKL  187 (398)
Q Consensus       114 ~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v  187 (398)
                      .++..+++... .......+++++++..+.+.+..++-+++||++.   |......+...+.  ...|..||++||+.+.
T Consensus       119 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  198 (271)
T PRK13638        119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL  198 (271)
T ss_pred             HHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45555665432 2223348899999999999999999999999999   4444444443432  1247789999999887


Q ss_pred             HHHhc
Q 015891          188 TTEMV  192 (398)
Q Consensus       188 ~~~~~  192 (398)
                      +..++
T Consensus       199 ~~~~~  203 (271)
T PRK13638        199 IYEIS  203 (271)
T ss_pred             HHHhC
Confidence            76643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.68  E-value=2.8e-07  Score=84.10  Aligned_cols=87  Identities=20%  Similarity=0.212  Sum_probs=59.5

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ..++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..||++||+
T Consensus       126 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~  205 (243)
T TIGR02315       126 ALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ  205 (243)
T ss_pred             HHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3455666666532 2233458899999999999999999999999999   4444444444443   1236789999999


Q ss_pred             hHHHHHhcCCCceEEc
Q 015891          185 EKLTTEMVGEENLHQL  200 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l  200 (398)
                      ...+..+++  +++.+
T Consensus       206 ~~~~~~~~d--~v~~l  219 (243)
T TIGR02315       206 VDLAKKYAD--RIVGL  219 (243)
T ss_pred             HHHHHHhcC--eEEEE
Confidence            987765433  34444

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.68  E-value=3.8e-07  Score=94.75  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=57.3

Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTT  189 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~  189 (398)
                      ..++..+++.. .......+++++++..|.+.|..++-+|+||++.   |....+.+...+..-. ..||++||+...+.
T Consensus       140 ~~~l~~lgl~~-~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~tvlivsHd~~~l~  217 (635)
T PRK11147        140 NEVLAQLGLDP-DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-GSIIFISHDRSFIR  217 (635)
T ss_pred             HHHHHhCCCCC-CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCHHHHH
Confidence            34455566642 2333458999999999999999999999999999   4455555555554222 48999999999887


Q ss_pred             HhcC
Q 015891          190 EMVG  193 (398)
Q Consensus       190 ~~~~  193 (398)
                      .+++
T Consensus       218 ~~~d  221 (635)
T PRK11147        218 NMAT  221 (635)
T ss_pred             HhcC
Confidence            7543

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.68  E-value=4.9e-07  Score=81.53  Aligned_cols=136  Identities=18%  Similarity=0.152  Sum_probs=86.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc-----------eEEEEecCCcc-----c---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP-----------RIWVCTMSGQK-----T---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-----------~~~v~~v~~~~-----~---------------  107 (398)
                      .-.+++|+|++|+|||||++.++..... ..  .++.           ...+.++.+..     +               
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~  111 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ  111 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCC
Confidence            4568999999999999999999764210 00  0000           00111111110     0               


Q ss_pred             -HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 -AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 -~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                       .......+++.+++..  ........+.++.++..+.+.+..++-++|||++.   |....+.+...+.   ...|..|
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv  191 (225)
T PRK10247        112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAV  191 (225)
T ss_pred             hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence             1123446777777742  23334458899999999999999999999999998   4444455544443   2237889


Q ss_pred             EEEeCChHHHHHhcCCCceEEc
Q 015891          179 IITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       179 IiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      |++||+.+....   .++++.+
T Consensus       192 ii~sh~~~~~~~---~d~i~~l  210 (225)
T PRK10247        192 LWVTHDKDEINH---ADKVITL  210 (225)
T ss_pred             EEEECChHHHHh---CCEEEEE
Confidence            999999887753   3455555

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=2.8e-07  Score=82.94  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHc---CCCCCCEEEE
Q 015891          108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVL---PRGYGERLII  180 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l---~~~~gs~IIi  180 (398)
                      ......+.+..+++.... ..+...++++.++..++..|.-++.++|||++.   |....+.+...+   ....|.+||+
T Consensus       115 ~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~  194 (235)
T COG1122         115 IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII  194 (235)
T ss_pred             HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            344566777777776542 334458999999999999999999999999999   443333333333   2344789999


Q ss_pred             EeCChHHHHHhcCC
Q 015891          181 TSRNEKLTTEMVGE  194 (398)
Q Consensus       181 TTR~~~v~~~~~~~  194 (398)
                      +||+.+.....++.
T Consensus       195 ~tHd~~~~~~~ad~  208 (235)
T COG1122         195 VTHDLELVLEYADR  208 (235)
T ss_pred             EeCcHHHHHhhCCE
Confidence            99999887775443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.68  E-value=1e-07  Score=86.81  Aligned_cols=137  Identities=19%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------ceEEEEe---cCCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------PRIWVCT---MSGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------~~~~v~~---v~~~~~----------------  107 (398)
                      .-.+++|.|++|+|||||++.++.-... ..  .|+            .+.++..   +....+                
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  106 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE  106 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence            4578999999999999999999764210 00  000            1111110   000000                


Q ss_pred             ------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891          108 ------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY  174 (398)
Q Consensus       108 ------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~  174 (398)
                            .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  186 (239)
T cd03296         107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL  186 (239)
T ss_pred             cCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence                  01223456667776532 2223348899999999999999999999999999   4444444444443   123


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      |..||++||+.+.+..++  ++++.+
T Consensus       187 ~~tvii~sH~~~~~~~~~--d~i~~l  210 (239)
T cd03296         187 HVTTVFVTHDQEEALEVA--DRVVVM  210 (239)
T ss_pred             CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence            678999999988766543  344444

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=5.2e-07  Score=81.87  Aligned_cols=130  Identities=18%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cc------------------cceEEEEec---CCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QF------------------VPRIWVCTM---SGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F------------------~~~~~v~~v---~~~~~----------  107 (398)
                      .-.+++|.|++|+|||||++.++.-... ..  .|                  ..+.++..-   -...+          
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  113 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL  113 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence            4568999999999999999999764210 00  00                  011111100   00001          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              ......++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  193 (233)
T PRK11629        114 IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR  193 (233)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                    11234566777777542 2223448899999999999999999999999999   4444444444443   1


Q ss_pred             CCCCEEEEEeCChHHHHHh
Q 015891          173 GYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..|..||++||+.+.+..+
T Consensus       194 ~~g~tvii~sH~~~~~~~~  212 (233)
T PRK11629        194 LQGTAFLVVTHDLQLAKRM  212 (233)
T ss_pred             hCCCEEEEEeCCHHHHHhh
Confidence            2478999999999877654

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=3.9e-07  Score=84.86  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce-----------EEEEecCCc----------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR-----------IWVCTMSGQ----------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~-----------~~v~~v~~~----------------------  105 (398)
                      .-.+++|+|++|+|||||++.+...... ..  .|+..           -.+.++.+.                      
T Consensus        29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~  108 (277)
T PRK13652         29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG  108 (277)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence            4568999999999999999999754110 00  01000           001111111                      


Q ss_pred             ccH---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          106 KTA---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       106 ~~~---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                      .+.   ......+++.+++... .......+.+++++..+.+++..++-++|||++.   |....+.+...+.   ...|
T Consensus       109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g  188 (277)
T PRK13652        109 LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG  188 (277)
T ss_pred             CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            000   1123455666666532 2233458999999999999999999999999999   4444444444443   2237


Q ss_pred             CEEEEEeCChHHHHHhcC
Q 015891          176 ERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~~~  193 (398)
                      .+||++||+.+....+++
T Consensus       189 ~tvli~tH~~~~~~~~~d  206 (277)
T PRK13652        189 MTVIFSTHQLDLVPEMAD  206 (277)
T ss_pred             CEEEEEecCHHHHHHhCC
Confidence            899999999887655433

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.67  E-value=2.8e-07  Score=83.99  Aligned_cols=131  Identities=20%  Similarity=0.240  Sum_probs=82.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc----------------ceEEEEe---cCCccc------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV----------------PRIWVCT---MSGQKT------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~----------------~~~~v~~---v~~~~~------------  107 (398)
                      .-.+++|.|++|+|||||++.+..-... ..  .|+                .+.++..   +....+            
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  105 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV  105 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence            4568999999999999999999754210 00  000                0111110   000000            


Q ss_pred             -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                             ......++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...
T Consensus       106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~  185 (240)
T PRK09493        106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE  185 (240)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence                   01123456666776532 2223347899999999999999999999999999   4444444444442  224


Q ss_pred             CCEEEEEeCChHHHHHhc
Q 015891          175 GERLIITSRNEKLTTEMV  192 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~  192 (398)
                      +..||++||+...+..++
T Consensus       186 ~~tiii~sH~~~~~~~~~  203 (240)
T PRK09493        186 GMTMVIVTHEIGFAEKVA  203 (240)
T ss_pred             CCEEEEEeCCHHHHHHhC
Confidence            788999999998876643

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.67  E-value=2.6e-07  Score=93.26  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=83.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc--------------eEEEEe-----------------cCCcc-
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP--------------RIWVCT-----------------MSGQK-  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~--------------~~~v~~-----------------v~~~~-  106 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  |..              ..++..                 +.... 
T Consensus        28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  107 (490)
T PRK10938         28 AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ  107 (490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence            4568999999999999999999754110 000  000              001100                 00000 


Q ss_pred             ---cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCE
Q 015891          107 ---TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGER  177 (398)
Q Consensus       107 ---~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~  177 (398)
                         ........++..+++... .......+++++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..
T Consensus       108 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t  187 (490)
T PRK10938        108 DEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT  187 (490)
T ss_pred             cchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence               011234567777877542 2333458999999999999999999999999999   4444444444432  234788


Q ss_pred             EEEEeCChHHHHHhc
Q 015891          178 LIITSRNEKLTTEMV  192 (398)
Q Consensus       178 IIiTTR~~~v~~~~~  192 (398)
                      ||++||+...+...+
T Consensus       188 vii~tH~~~~~~~~~  202 (490)
T PRK10938        188 LVLVLNRFDEIPDFV  202 (490)
T ss_pred             EEEEeCCHHHHHhhC
Confidence            999999987776643

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.67  E-value=1.3e-07  Score=92.14  Aligned_cols=132  Identities=19%  Similarity=0.181  Sum_probs=83.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c---------------cccc-eEEEEe---c----C--------C-----
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T---------------QFVP-RIWVCT---M----S--------G-----  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~---------------~F~~-~~~v~~---v----~--------~-----  104 (398)
                      .-.+++|.|++|+|||||.+.+..-.... .               .+.. ..++..   +    +        .     
T Consensus        28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~  107 (402)
T PRK09536         28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS  107 (402)
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence            45689999999999999999997541100 0               0000 111110   0    0        0     


Q ss_pred             -----cccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          105 -----QKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       105 -----~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                           ..........+++.+++.... ......+.+++++..+.+.|..++-+++||++.   |......+...+.  ..
T Consensus       108 ~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~  187 (402)
T PRK09536        108 RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD  187 (402)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence                 001123456677777776432 223348999999999999999999999999999   4432233333322  12


Q ss_pred             CCCEEEEEeCChHHHHHhcC
Q 015891          174 YGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~  193 (398)
                      .+.+||++||+.+.+..+++
T Consensus       188 ~g~TIIivsHdl~~~~~~ad  207 (402)
T PRK09536        188 DGKTAVAAIHDLDLAARYCD  207 (402)
T ss_pred             cCCEEEEEECCHHHHHHhCC
Confidence            47799999999988876544

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.67  E-value=9.4e-08  Score=89.79  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc----------------------cccceEEEEecC--------------Cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----------------------QFVPRIWVCTMS--------------GQ  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----------------------~F~~~~~v~~v~--------------~~  105 (398)
                      +-..++|+||+|+|||||.+.++.=+....                      -|...+....++              ..
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k  107 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK  107 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence            456899999999999999999965321110                      011100000010              01


Q ss_pred             ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHc---CCCCCCEE
Q 015891          106 KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVL---PRGYGERL  178 (398)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l---~~~~gs~I  178 (398)
                      ....+-..+.++.|++... ...+...+++++++..+.+++-.++-+++||++-+.   .....++..+   ...-+.++
T Consensus       108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~  187 (338)
T COG3839         108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT  187 (338)
T ss_pred             HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence            2345566778888887764 233455899999999999999999999999999842   2222222222   23357899


Q ss_pred             EEEeCChHHHHHhcCC
Q 015891          179 IITSRNEKLTTEMVGE  194 (398)
Q Consensus       179 IiTTR~~~v~~~~~~~  194 (398)
                      |..|||..-+..+.+.
T Consensus       188 IYVTHDq~EAmtladr  203 (338)
T COG3839         188 IYVTHDQVEAMTLADR  203 (338)
T ss_pred             EEEcCCHHHHHhhCCE
Confidence            9999999888877443

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.67  E-value=1.2e-07  Score=83.89  Aligned_cols=129  Identities=18%  Similarity=0.202  Sum_probs=81.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--------------ccc-ceEEEEe---cCCccc------------HHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--------------QFV-PRIWVCT---MSGQKT------------AES  110 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--------------~F~-~~~~v~~---v~~~~~------------~~~  110 (398)
                      .-.+++|+|++|+|||||++.+...... ..              .+. ...++..   +....+            ...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  104 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE  104 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence            4678999999999999999999764210 00              000 0111110   000001            122


Q ss_pred             HHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          111 IVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       111 ~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ....+++.+++... .......+.+++++..+.+.+..++-++|||++.   |....+.+...+.  ...|..||++||+
T Consensus       105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~  184 (201)
T cd03231         105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ  184 (201)
T ss_pred             HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            34566777777542 2223347889999999999999999999999999   4444444444443  2347789999998


Q ss_pred             hHHHHH
Q 015891          185 EKLTTE  190 (398)
Q Consensus       185 ~~v~~~  190 (398)
                      ......
T Consensus       185 ~~~~~~  190 (201)
T cd03231         185 DLGLSE  190 (201)
T ss_pred             chhhhh
Confidence            654443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.67  E-value=3.2e-07  Score=90.73  Aligned_cols=105  Identities=12%  Similarity=0.161  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCCCCCCC---CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---H----HHHHHHHhHcCCCCCCEEE
Q 015891          110 SIVKRILKRLGVDDGTT---NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---M----EVCKHLSKVLPRGYGERLI  179 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~----~~~~~l~~~l~~~~gs~II  179 (398)
                      ....++++.++++++..   .+...+++++++..++..+..+|.|||+|+++.   .    +.++.+... ....|..+|
T Consensus       131 ~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l-~~e~g~a~l  209 (539)
T COG1123         131 KRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL-QRELGMAVL  209 (539)
T ss_pred             HHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH-HHHcCcEEE
Confidence            34556778888877543   455689999999999999999999999999993   3    333333322 245689999


Q ss_pred             EEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891          180 ITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       180 iTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      ++|||..|...+++...+++=+.+-+.-....+|.+
T Consensus       210 ~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~  245 (539)
T COG1123         210 FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN  245 (539)
T ss_pred             EEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence            999999999887665444444444333444555543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=4.7e-07  Score=82.85  Aligned_cols=131  Identities=19%  Similarity=0.222  Sum_probs=81.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC----CCcc--ccc-----------eEEEEecCCcc-----c------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD----VKTQ--FVP-----------RIWVCTMSGQK-----T------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~----~~~~--F~~-----------~~~v~~v~~~~-----~------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-..    ....  |+.           ..-+.++.+..     +            
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~  106 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLH  106 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhc
Confidence            456899999999999999999986411    0110  000           00011111110     0            


Q ss_pred             --------HHHHHHHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891          108 --------AESIVKRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP  171 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~  171 (398)
                              .......+++.+++..     ........+.+++++..+.+.+..++-+++||++.   |......+...+.
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~  186 (246)
T PRK14269        107 GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK  186 (246)
T ss_pred             CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence                    0112345667777642     11223347899999999999999999999999998   4444444444433


Q ss_pred             -CCCCCEEEEEeCChHHHHHhc
Q 015891          172 -RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~  192 (398)
                       ...+..||++||+.+.+..++
T Consensus       187 ~~~~~~tiii~tH~~~~~~~~~  208 (246)
T PRK14269        187 ELSHNLSMIMVTHNMQQGKRVA  208 (246)
T ss_pred             HHhCCCEEEEEecCHHHHHhhC
Confidence             123788999999988766543

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.67  E-value=5.2e-07  Score=82.33  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             HHHHHHHcCCCCC--CCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDDG--TTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~~--~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ...++..+++...  ..... ..+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||
T Consensus       123 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH  202 (243)
T TIGR01978       123 LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH  202 (243)
T ss_pred             HHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEe
Confidence            3445666676521  22222 38899999999999999999999999999   4444444444443  224788999999


Q ss_pred             ChHHHHHh
Q 015891          184 NEKLTTEM  191 (398)
Q Consensus       184 ~~~v~~~~  191 (398)
                      +.+.+..+
T Consensus       203 ~~~~~~~~  210 (243)
T TIGR01978       203 YQRLLNYI  210 (243)
T ss_pred             cHHHHHhh
Confidence            99877664

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.9e-07  Score=79.89  Aligned_cols=136  Identities=15%  Similarity=0.159  Sum_probs=83.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-----------------C-------------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-----------------G-------------------  104 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-----------------~-------------------  104 (398)
                      .+-.+++|.|++|+||||+.+.++.-  +.. -.+.+.++.+.                 +                   
T Consensus        26 e~Gei~GlLG~NGAGKTT~LRmiatl--L~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L  102 (245)
T COG4555          26 EEGEITGLLGENGAGKTTLLRMIATL--LIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL  102 (245)
T ss_pred             ccceEEEEEcCCCCCchhHHHHHHHh--ccC-CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence            56789999999999999999999754  111 11111111111                 0                   


Q ss_pred             ----cccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHcC--CCC
Q 015891          105 ----QKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVLP--RGY  174 (398)
Q Consensus       105 ----~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~--~~~  174 (398)
                          ....+.-..++.+.|++..... .-.+.+.+..++..+++++-++|-++|||++.+.   .....+...+.  .++
T Consensus       103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e  182 (245)
T COG4555         103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE  182 (245)
T ss_pred             hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence                0112223344444455433211 1123577888899999999999999999999943   33333333332  456


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEE
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQ  199 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~  199 (398)
                      |-.||+.||..+-...+|+...++.
T Consensus       183 gr~viFSSH~m~EvealCDrvivlh  207 (245)
T COG4555         183 GRAVIFSSHIMQEVEALCDRVIVLH  207 (245)
T ss_pred             CcEEEEecccHHHHHHhhheEEEEe
Confidence            8889999999876665555543433

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=5.3e-07  Score=84.52  Aligned_cols=132  Identities=16%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce---------------EEEEecCCcc-----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR---------------IWVCTMSGQK-----------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~---------------~~v~~v~~~~-----------------  106 (398)
                      .-.+++|.|++|+|||||++.+..-.... .  .|+..               .-+.++.+..                 
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~  111 (290)
T PRK13634         32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP  111 (290)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence            45689999999999999999997541110 0  00000               0011111110                 


Q ss_pred             -----c---HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          107 -----T---AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       107 -----~---~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                           .   .......+++.+++..  ........+.+++++..+.+.+..++-+++||++.   |......+...+.  
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l  191 (290)
T PRK13634        112 MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL  191 (290)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence                 0   1123455667778752  23344558999999999999999999999999999   4444444443332  


Q ss_pred             -CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 -RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                       ...|.+||++||+.+.+..+++
T Consensus       192 ~~~~g~tviiitHd~~~~~~~~d  214 (290)
T PRK13634        192 HKEKGLTTVLVTHSMEDAARYAD  214 (290)
T ss_pred             HHhcCCEEEEEeCCHHHHHHhCC
Confidence             2247899999999887766533

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=4.1e-07  Score=94.43  Aligned_cols=80  Identities=24%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHH
Q 015891          113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKL  187 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v  187 (398)
                      ..++..+++..  ........+++++++..|.+.|..++-+|+||++.   |....+.+...+... +..||++||+...
T Consensus       130 ~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~tviivsHd~~~  208 (638)
T PRK10636        130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QGTLILISHDRDF  208 (638)
T ss_pred             HHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCHHH
Confidence            34566666642  22333458999999999999999999999999999   445555555555422 4589999999998


Q ss_pred             HHHhcC
Q 015891          188 TTEMVG  193 (398)
Q Consensus       188 ~~~~~~  193 (398)
                      +..+++
T Consensus       209 l~~~~d  214 (638)
T PRK10636        209 LDPIVD  214 (638)
T ss_pred             HHHhcC
Confidence            877543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.66  E-value=6.6e-07  Score=82.27  Aligned_cols=131  Identities=15%  Similarity=0.253  Sum_probs=82.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-----Ccc--ccc---------eEEEEecCCcc--------c----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-----KTQ--FVP---------RIWVCTMSGQK--------T----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-----~~~--F~~---------~~~v~~v~~~~--------~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-...     ...  ++.         ...+.++.+..        +          
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~  107 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL  107 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence            4568999999999999999999865211     010  100         00011111110        0          


Q ss_pred             ------HHHHHHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---
Q 015891          108 ------AESIVKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---  171 (398)
Q Consensus       108 ------~~~~~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---  171 (398)
                            .......+++.+++...    .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~  187 (254)
T PRK10418        108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV  187 (254)
T ss_pred             HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence                  01223456666776541    2233458899999999999999999999999999   4444334433332   


Q ss_pred             CCCCCEEEEEeCChHHHHHhc
Q 015891          172 RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...|..||++||+......++
T Consensus       188 ~~~g~til~~sH~~~~~~~~~  208 (254)
T PRK10418        188 QKRALGMLLVTHDMGVVARLA  208 (254)
T ss_pred             HhcCcEEEEEecCHHHHHHhC
Confidence            224788999999988766543

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.66  E-value=1.3e-06  Score=84.45  Aligned_cols=182  Identities=15%  Similarity=0.178  Sum_probs=104.4

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCC--ccccc-----------------eE
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVK--TQFVP-----------------RI   97 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~-----------------~~   97 (398)
                      -.+++|.+..++.|..++..   ..-...+.++|++|+||||+|+.+.....-.  ..+..                 ..
T Consensus        13 ~~~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~   89 (355)
T TIGR02397        13 FEDVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI   89 (355)
T ss_pred             HhhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence            36789999999999998864   2234578899999999999999987652100  11110                 11


Q ss_pred             EEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcCC-CC
Q 015891           98 WVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLPR-GY  174 (398)
Q Consensus        98 ~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~-~~  174 (398)
                      ++. -...... ..++.++..+...                     -+.+++-++|+|+++..  ...+.+...+.. ..
T Consensus        90 ~~~-~~~~~~~-~~~~~l~~~~~~~---------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~  146 (355)
T TIGR02397        90 EID-AASNNGV-DDIREILDNVKYA---------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE  146 (355)
T ss_pred             Eee-ccccCCH-HHHHHHHHHHhcC---------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence            111 0000000 0111111111100                     01234569999999743  444555555543 23


Q ss_pred             CCEEEEEeCChH-HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          175 GERLIITSRNEK-LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       175 gs~IIiTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+.+|++|.+.. +...+......+++.+++. ++...++.+.+...+...++   +.+..+++.++|.|..+..
T Consensus       147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~-~~l~~~l~~~~~~~g~~i~~---~a~~~l~~~~~g~~~~a~~  217 (355)
T TIGR02397       147 HVVFILATTEPHKIPATILSRCQRFDFKRIPL-EDIVERLKKILDKEGIKIED---EALELIARAADGSLRDALS  217 (355)
T ss_pred             ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCChHHHHH
Confidence            566666765544 4444444456889999888 55666666644433333222   3677788889998876554

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=4.8e-07  Score=88.06  Aligned_cols=132  Identities=13%  Similarity=0.105  Sum_probs=84.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEe---cCCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCT---MSGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~---v~~~~~----------  107 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .|+                  ...++..   +....+          
T Consensus        53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~  132 (400)
T PRK10070         53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME  132 (400)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence            45689999999999999999997642110 0  000                  1111110   000001          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              ......++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       133 ~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~  212 (400)
T PRK10070        133 LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA  212 (400)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence                    01233456777777643 2333458999999999999999999999999999   4444444444442   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..+.+||++||+.+.+..+++
T Consensus       213 ~~g~TIIivTHd~~~~~~~~D  233 (400)
T PRK10070        213 KHQRTIVFISHDLDEAMRIGD  233 (400)
T ss_pred             HCCCeEEEEECCHHHHHHhCC
Confidence            247889999999987766533

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.66  E-value=4.1e-07  Score=92.18  Aligned_cols=81  Identities=11%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++..+++. . ........+++++++..+.+.+..++-+||||++.   |....+.+...+.  ...|..||++||+
T Consensus       383 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd  462 (510)
T PRK15439        383 LERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD  462 (510)
T ss_pred             HHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            44667777875 2 23334458999999999999999999999999999   4444444444432  1247889999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      .+.+..++
T Consensus       463 ~~~i~~~~  470 (510)
T PRK15439        463 LEEIEQMA  470 (510)
T ss_pred             HHHHHHhC
Confidence            98887654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=4.3e-07  Score=84.98  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=84.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------------eEEEEe----------cCCc-----
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------------RIWVCT----------MSGQ-----  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------------~~~v~~----------v~~~-----  105 (398)
                      .-.+++|+|++|+|||||++.++...... .  .|+.                  +.++..          +..+     
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~  111 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGP  111 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhH
Confidence            45689999999999999999997542110 0  0000                  111110          0000     


Q ss_pred             ----cc---HHHHHHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          106 ----KT---AESIVKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       106 ----~~---~~~~~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                          ..   .......++..+++. . ........+.++.++..+.+.+..++-+++||++.   |......+...+.  
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l  191 (286)
T PRK13646        112 KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL  191 (286)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence                00   112344667777775 2 22334558999999999999999999999999999   4444444444443  


Q ss_pred             -CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 -RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                       ...|.+||++||+.+.+..+++
T Consensus       192 ~~~~g~tvl~vtH~~~~~~~~~d  214 (286)
T PRK13646        192 QTDENKTIILVSHDMNEVARYAD  214 (286)
T ss_pred             HHhCCCEEEEEecCHHHHHHhCC
Confidence             2347899999999887665433

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.66  E-value=1.5e-07  Score=91.21  Aligned_cols=178  Identities=15%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             CCCCcccchhhHHHHHHHHhccC---------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           36 PPANVHGFANEELHLQKLLSNRG---------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~---------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..+++.|++..+++|.+.+....         +-...+.+.|+|++|+|||++|+++++.  ....|     +. +..  
T Consensus       120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~-v~~--  189 (364)
T TIGR01242       120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IR-VVG--  189 (364)
T ss_pred             CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Ee-cch--
Confidence            34678999999999998775310         1123567999999999999999999987  44333     22 211  


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL---  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l---  170 (398)
                        ..+....   ++           .........+...-...+.+|+|||++..             .....+...+   
T Consensus       190 --~~l~~~~---~g-----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l  253 (364)
T TIGR01242       190 --SELVRKY---IG-----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL  253 (364)
T ss_pred             --HHHHHHh---hh-----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence              1111110   00           11111222233333456789999998742             1112222222   


Q ss_pred             C---CCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+.+||.||........ +   ...+..+++++.+. ++...+|+..........+-    ....+++.+.|..
T Consensus       254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~-~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s  328 (364)
T TIGR01242       254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF-EGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS  328 (364)
T ss_pred             hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH-HHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence            1   2346778888876432221 1   12256788977776 77888887654332211111    3456777777765


Q ss_pred             h
Q 015891          244 E  244 (398)
Q Consensus       244 l  244 (398)
                      -
T Consensus       329 g  329 (364)
T TIGR01242       329 G  329 (364)
T ss_pred             H
Confidence            3

Many proteins may score above the trusted cutoff because an internal

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.66  E-value=9.6e-07  Score=84.57  Aligned_cols=199  Identities=15%  Similarity=0.190  Sum_probs=112.5

Q ss_pred             CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc----ccceEEEEecCCcccHHHH
Q 015891           36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ----FVPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~v~~v~~~~~~~~~  111 (398)
                      ....++|-++..+.+...+..   ..-...+.|+|+.|+||||+|..+++.  +...    +....    ..........
T Consensus        21 ~~~~l~Gh~~a~~~L~~a~~~---grl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~----~~~~~~~c~~   91 (351)
T PRK09112         21 ENTRLFGHEEAEAFLAQAYRE---GKLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET----LADPDPASPV   91 (351)
T ss_pred             chhhccCcHHHHHHHHHHHHc---CCCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc----cCCCCCCCHH
Confidence            346799999999999999964   233557999999999999999999776  2211    11110    1111111112


Q ss_pred             HHHHHHH-------cCCCCCCC--CCcCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcCC-CC
Q 015891          112 VKRILKR-------LGVDDGTT--NSFEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLPR-GY  174 (398)
Q Consensus       112 ~~~il~~-------l~~~~~~~--~~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~  174 (398)
                      .+.+...       +.......  .....-..++.+ .+...+.     ++..++|+|+++  +....+.|...+.. ..
T Consensus        92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~  170 (351)
T PRK09112         92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA  170 (351)
T ss_pred             HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence            2222211       10000000  000112234433 3444443     356799999999  44555666666642 23


Q ss_pred             CCEEEEEeCC-hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          175 GERLIITSRN-EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       175 gs~IIiTTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                      ++.+|++|+. ..+...+......+.+.|++. ++...++.+......  .   ..+....|++.++|.|.....+.
T Consensus       171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~-~~~~~~L~~~~~~~~--~---~~~~~~~i~~~s~G~pr~Al~ll  241 (351)
T PRK09112        171 RALFILISHSSGRLLPTIRSRCQPISLKPLDD-DELKKALSHLGSSQG--S---DGEITEALLQRSKGSVRKALLLL  241 (351)
T ss_pred             CceEEEEECChhhccHHHHhhccEEEecCCCH-HHHHHHHHHhhcccC--C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence            4555555544 444444545567999999999 667777766322211  1   12256678899999998765543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.65  E-value=5.3e-07  Score=83.00  Aligned_cols=137  Identities=16%  Similarity=0.159  Sum_probs=84.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc-----------eEEEEecCCcc------c--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP-----------RIWVCTMSGQK------T--------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-----------~~~v~~v~~~~------~--------------  107 (398)
                      .-.+++|+|++|+|||||++.+...... ..  .|+.           ...+.++.+..      +              
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  105 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRS  105 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhh
Confidence            4578999999999999999999764211 00  0100           00011111110      0              


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                              .......+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ..
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  185 (256)
T TIGR03873       106 LWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA  185 (256)
T ss_pred             hccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence                    01123455666666432 2223348899999999999999999999999999   4444444444443  22


Q ss_pred             CCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          174 YGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .+..||++||+......+++  +++.+
T Consensus       186 ~~~tiii~sH~~~~~~~~~d--~i~~l  210 (256)
T TIGR03873       186 TGVTVVAALHDLNLAASYCD--HVVVL  210 (256)
T ss_pred             cCCEEEEEeCCHHHHHHhCC--EEEEE
Confidence            47789999999988766433  44444

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=2.9e-07  Score=85.86  Aligned_cols=128  Identities=17%  Similarity=0.129  Sum_probs=82.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc--------------eEEEEe----------cCCc---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP--------------RIWVCT----------MSGQ---------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~--------------~~~v~~----------v~~~---------  105 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+.              +.++..          +..+         
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~  111 (279)
T PRK13650         32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG  111 (279)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence            4578999999999999999999754110 00  0000              011110          0000         


Q ss_pred             cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          106 KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       106 ~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                      .+   .......+++.+++... .......+.++.++..+.+++..++-++|||++.   |....+.+...+.   ...|
T Consensus       112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g  191 (279)
T PRK13650        112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ  191 (279)
T ss_pred             CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            00   11234556677777542 2233458999999999999999999999999999   4444444444443   2247


Q ss_pred             CEEEEEeCChHHHH
Q 015891          176 ERLIITSRNEKLTT  189 (398)
Q Consensus       176 s~IIiTTR~~~v~~  189 (398)
                      .+||++||+.....
T Consensus       192 ~tilivtH~~~~~~  205 (279)
T PRK13650        192 MTVISITHDLDEVA  205 (279)
T ss_pred             CEEEEEecCHHHHH
Confidence            89999999987764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.65  E-value=2.8e-07  Score=77.67  Aligned_cols=149  Identities=15%  Similarity=0.119  Sum_probs=92.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEec---------------------------CCc--------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTM---------------------------SGQ--------  105 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v---------------------------~~~--------  105 (398)
                      ..-.+++|.|++|+|||||...++.=   ...-.+.+|+...                           .++        
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF---~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~   99 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGF---ETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG   99 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhc---cCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence            34578999999999999999999642   1111122333211                           110        


Q ss_pred             ----ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---H----HHHHHHHhHcCCC
Q 015891          106 ----KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---M----EVCKHLSKVLPRG  173 (398)
Q Consensus       106 ----~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~----~~~~~l~~~l~~~  173 (398)
                          ....+.+..++.+.|+.... ..+...+++++++..++++|-..+-+++||++.+   +    +.+..+.... ..
T Consensus       100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~-~E  178 (231)
T COG3840         100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC-DE  178 (231)
T ss_pred             cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH-Hh
Confidence                11234566778888877643 2344589999999999999999999999999984   3    3333333332 45


Q ss_pred             CCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHH
Q 015891          174 YGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIY  213 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~  213 (398)
                      .+-++++.||..+-+..+......+.=+.......+..+|
T Consensus       179 ~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         179 RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            6788999999876665543333333333344433344444

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=3.6e-07  Score=85.54  Aligned_cols=132  Identities=19%  Similarity=0.247  Sum_probs=84.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC------------Cc------ccc-ceEEEEe----------cCCc-------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV------------KT------QFV-PRIWVCT----------MSGQ-------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~------------~~------~F~-~~~~v~~----------v~~~-------  105 (398)
                      .-.+++|+|++|+|||||++.+..-...            ..      .+. .+.++..          +...       
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~  111 (287)
T PRK13637         32 DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN  111 (287)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence            4568999999999999999999754110            00      000 0111110          0000       


Q ss_pred             --cc---HHHHHHHHHHHcCCC--C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---
Q 015891          106 --KT---AESIVKRILKRLGVD--D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---  171 (398)
Q Consensus       106 --~~---~~~~~~~il~~l~~~--~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---  171 (398)
                        ..   .......+++.+++.  . ........+.+++++..+.+.|..++-+||+|++.   |......+...+.   
T Consensus       112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~  191 (287)
T PRK13637        112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH  191 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence              00   112345677777875  2 23334458999999999999999999999999999   4444444444443   


Q ss_pred             CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...|.+||++||+.+.+..+++
T Consensus       192 ~~~g~tvi~vtHd~~~~~~~~d  213 (287)
T PRK13637        192 KEYNMTIILVSHSMEDVAKLAD  213 (287)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCC
Confidence            2237899999999887765433

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=4.3e-07  Score=83.28  Aligned_cols=86  Identities=9%  Similarity=0.064  Sum_probs=58.1

Q ss_pred             HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      .++++.+++..     ......+.+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||
T Consensus       124 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH  203 (250)
T PRK14247        124 RWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH  203 (250)
T ss_pred             HHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            44556666532     12233458999999999999999999999999998   4444444444433 123678999999


Q ss_pred             ChHHHHHhcCCCceEEc
Q 015891          184 NEKLTTEMVGEENLHQL  200 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l  200 (398)
                      +......++  ++++.+
T Consensus       204 ~~~~~~~~~--d~i~~l  218 (250)
T PRK14247        204 FPQQAARIS--DYVAFL  218 (250)
T ss_pred             CHHHHHHhc--CEEEEE
Confidence            988776543  344444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.65  E-value=3.5e-07  Score=81.12  Aligned_cols=130  Identities=15%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------e------------cC--------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------T------------MS--------  103 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~------------v~--------  103 (398)
                      +.-.+++++|++|+||||+.+++-+-  + ..-.+.+.+.                 |            +.        
T Consensus        25 ~~gef~vliGpSGsGKTTtLkMINrL--i-ept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~  101 (309)
T COG1125          25 EEGEFLVLIGPSGSGKTTTLKMINRL--I-EPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK  101 (309)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhcc--c-CCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence            45678899999999999999999442  1 1111111111                 0            00        


Q ss_pred             ----CcccHHHHHHHHHHHcCCCCC---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHc
Q 015891          104 ----GQKTAESIVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVL  170 (398)
Q Consensus       104 ----~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l  170 (398)
                          ......+...+++..+++++.   ...+.+.+++++++.-+.++|...+-++++|++.   |+   ..++.....+
T Consensus       102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l  181 (309)
T COG1125         102 LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL  181 (309)
T ss_pred             hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence                112344556788888888763   3445668999999999999999999999999998   33   2222222222


Q ss_pred             CCCCCCEEEEEeCChHHHHHhcC
Q 015891          171 PRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       171 ~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...-+.+||+.|||.+-|-.+.+
T Consensus       182 q~~l~kTivfVTHDidEA~kLad  204 (309)
T COG1125         182 QKELGKTIVFVTHDIDEALKLAD  204 (309)
T ss_pred             HHHhCCEEEEEecCHHHHHhhhc
Confidence            23458899999999988877643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=1.4e-07  Score=85.98  Aligned_cols=130  Identities=16%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc------------eEEEEecCCcc------c-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP------------RIWVCTMSGQK------T-------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~------------~~~v~~v~~~~------~-------------  107 (398)
                      .-.+++|.|++|+|||||++.+...... ..  .++.            ..-+.++.+..      +             
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~  107 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD  107 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence            4578999999999999999999764211 00  0000            00011111110      0             


Q ss_pred             ------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891          108 ------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG  175 (398)
Q Consensus       108 ------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g  175 (398)
                            ......++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g  187 (241)
T PRK10895        108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG  187 (241)
T ss_pred             ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC
Confidence                  11234456666666432 1223347899999999999999999999999999   4443333333332  2247


Q ss_pred             CEEEEEeCChHHHHHh
Q 015891          176 ERLIITSRNEKLTTEM  191 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~  191 (398)
                      ..||++||+......+
T Consensus       188 ~tiii~sH~~~~~~~~  203 (241)
T PRK10895        188 LGVLITDHNVRETLAV  203 (241)
T ss_pred             CEEEEEEcCHHHHHHh
Confidence            7899999998766554

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.65  E-value=6.2e-07  Score=82.68  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      .++++.+++..  ........+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++||+
T Consensus       132 ~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~  211 (258)
T PRK11701        132 GDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD  211 (258)
T ss_pred             HHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            45566777753  12334458999999999999999999999999999   4444444444432   2237899999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      ...+..+++
T Consensus       212 ~~~~~~~~d  220 (258)
T PRK11701        212 LAVARLLAH  220 (258)
T ss_pred             HHHHHHhcC
Confidence            988876433

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.65  E-value=7.2e-07  Score=81.39  Aligned_cols=81  Identities=11%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChH
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEK  186 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~  186 (398)
                      ...+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||+|||+.+
T Consensus       124 ~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  203 (242)
T TIGR03411       124 IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME  203 (242)
T ss_pred             HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            4556667777542 2223348899999999999999999999999999   4444444444433 122578999999988


Q ss_pred             HHHHhc
Q 015891          187 LTTEMV  192 (398)
Q Consensus       187 v~~~~~  192 (398)
                      .+..++
T Consensus       204 ~~~~~~  209 (242)
T TIGR03411       204 FVRSIA  209 (242)
T ss_pred             HHHHhC
Confidence            776643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.65  E-value=4.8e-07  Score=89.77  Aligned_cols=129  Identities=15%  Similarity=0.128  Sum_probs=83.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE----------ecCCcccH------------------HHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC----------TMSGQKTA------------------ESIVK  113 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~----------~v~~~~~~------------------~~~~~  113 (398)
                      .-.+++|+|++|+|||||++.++.-...   ..+.+++.          ......+.                  .....
T Consensus        49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~  125 (549)
T PRK13545         49 EGEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIP  125 (549)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence            4568999999999999999999876211   11111110          01111111                  11223


Q ss_pred             HHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHH
Q 015891          114 RILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKL  187 (398)
Q Consensus       114 ~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v  187 (398)
                      .+++.+++... .......+++++++..+++++...+-+|+||++.   |....+.+...+.  ...|..||++||+...
T Consensus       126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~  205 (549)
T PRK13545        126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ  205 (549)
T ss_pred             HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            45666666542 2233458999999999999999999999999999   4444444444432  2347899999999887


Q ss_pred             HHHhcC
Q 015891          188 TTEMVG  193 (398)
Q Consensus       188 ~~~~~~  193 (398)
                      +..+++
T Consensus       206 i~~l~D  211 (549)
T PRK13545        206 VKSFCT  211 (549)
T ss_pred             HHHhCC
Confidence            766533

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.64  E-value=6.3e-07  Score=80.92  Aligned_cols=79  Identities=14%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             HHHHHHHcCCCCCC-CC--CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDDGT-TN--SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~~~-~~--~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ...+++.+++.... ..  ....+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ... ..||++||
T Consensus       120 ~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH  198 (227)
T cd03260         120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTH  198 (227)
T ss_pred             HHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEec
Confidence            34566777775431 22  2458999999999999999999999999999   4444444444443  223 78999999


Q ss_pred             ChHHHHHh
Q 015891          184 NEKLTTEM  191 (398)
Q Consensus       184 ~~~v~~~~  191 (398)
                      +...+..+
T Consensus       199 ~~~~~~~~  206 (227)
T cd03260         199 NMQQAARV  206 (227)
T ss_pred             cHHHHHHh
Confidence            98876654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.64  E-value=5.5e-07  Score=81.34  Aligned_cols=168  Identities=18%  Similarity=0.193  Sum_probs=93.0

Q ss_pred             CCcc-cchhh-HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVH-GFANE-ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~v-GR~~~-~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ++|+ |.... +..+.++..   .......+.|+|++|+|||+||+.+++.  ....-....+++ .....      .. 
T Consensus        18 d~f~~~~~~~~~~~l~~~~~---~~~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~-~~~~~------~~-   84 (227)
T PRK08903         18 DNFVAGENAELVARLRELAA---GPVADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLD-AASPL------LA-   84 (227)
T ss_pred             cccccCCcHHHHHHHHHHHh---ccCCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEe-hHHhH------HH-
Confidence            5555 44333 344444443   2234568899999999999999999886  211111234444 21110      00 


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcC--CCCCC-EEEEEeCChHH---
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLP--RGYGE-RLIITSRNEKL---  187 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~--~~~gs-~IIiTTR~~~v---  187 (398)
                         +                        ......-+||+||++..  ...+.+...+.  ...+. .+|+|++....   
T Consensus        85 ---~------------------------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~  137 (227)
T PRK08903         85 ---F------------------------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP  137 (227)
T ss_pred             ---H------------------------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence               0                        01123458999999833  33344444443  12333 46666664321   


Q ss_pred             -----HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          188 -----TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       188 -----~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                           ...+ .....++++||+.. ....++.+.....+...++   +....+++.+.|.+..+..+.
T Consensus       138 l~~~L~sr~-~~~~~i~l~pl~~~-~~~~~l~~~~~~~~v~l~~---~al~~L~~~~~gn~~~l~~~l  200 (227)
T PRK08903        138 LREDLRTRL-GWGLVYELKPLSDA-DKIAALKAAAAERGLQLAD---EVPDYLLTHFRRDMPSLMALL  200 (227)
T ss_pred             CCHHHHHHH-hcCeEEEecCCCHH-HHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHH
Confidence                 1122 22468899999984 4555665544333333333   366778888999998876643

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.3e-07  Score=94.26  Aligned_cols=131  Identities=19%  Similarity=0.229  Sum_probs=86.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCc--------cc------------HHHHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQ--------KT------------AESIVKRILKR  118 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~--------~~------------~~~~~~~il~~  118 (398)
                      .-.+++|+|++|+|||||++.+...... ...  +....-+.++.+.        ..            .......++..
T Consensus       337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  416 (638)
T PRK10636        337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG  416 (638)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH
Confidence            4569999999999999999999875211 111  1111111112221        01            11223456777


Q ss_pred             cCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          119 LGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       119 l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      +++..  ........+++++++..+.+.+..++-+||||++.   |....+.+...+..-. ..||++||+...+..+++
T Consensus       417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-gtvi~vSHd~~~~~~~~d  495 (638)
T PRK10636        417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE-GALVVVSHDRHLLRSTTD  495 (638)
T ss_pred             cCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHhCC
Confidence            77743  22334458999999999999999999999999999   4555555555554223 489999999998877543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.64  E-value=4.5e-07  Score=84.10  Aligned_cols=131  Identities=18%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-----------------ceEEEEe---cCCcccHH---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-----------------PRIWVCT---MSGQKTAE---------  109 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-----------------~~~~v~~---v~~~~~~~---------  109 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+                 ...++..   +....+..         
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  111 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE  111 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999764210 00  010                 0112110   00000111         


Q ss_pred             ----------HHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          110 ----------SIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       110 ----------~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                                .....++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  191 (269)
T PRK11831        112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS  191 (269)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence                      122335566666542 2223348999999999999999999999999999   4444444444443   2


Q ss_pred             CCCCEEEEEeCChHHHHHhc
Q 015891          173 GYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..|..||++||+...+..++
T Consensus       192 ~~g~tiiivsH~~~~~~~~~  211 (269)
T PRK11831        192 ALGVTCVVVSHDVPEVLSIA  211 (269)
T ss_pred             hcCcEEEEEecCHHHHHHhh
Confidence            23789999999987766543

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=5e-07  Score=83.11  Aligned_cols=81  Identities=11%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCCh
Q 015891          113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNE  185 (398)
Q Consensus       113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~  185 (398)
                      ..+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..||++||+.
T Consensus       135 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~  214 (255)
T PRK11300        135 ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM  214 (255)
T ss_pred             HHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence            445566666432 2223347899999999999999999999999999   4444444444443   22378999999999


Q ss_pred             HHHHHhcC
Q 015891          186 KLTTEMVG  193 (398)
Q Consensus       186 ~v~~~~~~  193 (398)
                      ..+..+++
T Consensus       215 ~~~~~~~d  222 (255)
T PRK11300        215 KLVMGISD  222 (255)
T ss_pred             HHHHHhCC
Confidence            88766533

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.64  E-value=2.5e-07  Score=85.80  Aligned_cols=175  Identities=17%  Similarity=0.249  Sum_probs=101.9

Q ss_pred             CCcccchhhHHH---HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFANEELH---LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      .++||.+..+.+   |..++    ..+....+.+||++|+||||||+.+....  +.+-  ..||. .+-...-..-++.
T Consensus       138 ~dyvGQ~hlv~q~gllrs~i----eq~~ipSmIlWGppG~GKTtlArlia~ts--k~~S--yrfve-lSAt~a~t~dvR~  208 (554)
T KOG2028|consen  138 DDYVGQSHLVGQDGLLRSLI----EQNRIPSMILWGPPGTGKTTLARLIASTS--KKHS--YRFVE-LSATNAKTNDVRD  208 (554)
T ss_pred             HHhcchhhhcCcchHHHHHH----HcCCCCceEEecCCCCchHHHHHHHHhhc--CCCc--eEEEE-EeccccchHHHHH
Confidence            456776655443   44444    34678889999999999999999999873  2221  34555 5543333333444


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEE--EEeCChHHH-
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLI--ITSRNEKLT-  188 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~II--iTTR~~~v~-  188 (398)
                      ++++-                    .-...+..++.+|++|+|.  +..+.+.   ++|. ..|.-++  .||.++.+- 
T Consensus       209 ife~a--------------------q~~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFql  265 (554)
T KOG2028|consen  209 IFEQA--------------------QNEKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQL  265 (554)
T ss_pred             HHHHH--------------------HHHHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccch
Confidence            44431                    1112345678999999998  4444443   3453 3454444  477776432 


Q ss_pred             -HHhcCCCceEEcCCCCChhHHHHHHHhhh---CCCCC---cchH----HHHHHHHHHHHhcCCCchh
Q 015891          189 -TEMVGEENLHQLQPLSDQESCWLIYRDSV---RDKDA---QLKS----QARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       189 -~~~~~~~~~~~l~~L~~~e~~~~l~~~~~---~~~~~---~~~~----~~~~~~~~I~~~c~GlPla  245 (398)
                       ..+.....++.|++|.. ++...++.++.   +....   ..+.    ....+.+-++.-|.|-..+
T Consensus       266 n~aLlSRC~VfvLekL~~-n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~  332 (554)
T KOG2028|consen  266 NAALLSRCRVFVLEKLPV-NAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA  332 (554)
T ss_pred             hHHHHhccceeEeccCCH-HHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence             22234578999999999 66677776632   22111   1111    2333555566667776654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=4.7e-07  Score=86.20  Aligned_cols=83  Identities=13%  Similarity=0.220  Sum_probs=58.8

Q ss_pred             HHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          112 VKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       112 ~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      ..++++.+++...    .......++++.++..+.+.+..++-+||+|++.   |......+...+.   ...|..||++
T Consensus       131 ~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~i  210 (326)
T PRK11022        131 AIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLI  210 (326)
T ss_pred             HHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            4456777777541    2334458999999999999999999999999999   3332223332222   2347899999


Q ss_pred             eCChHHHHHhcCC
Q 015891          182 SRNEKLTTEMVGE  194 (398)
Q Consensus       182 TR~~~v~~~~~~~  194 (398)
                      ||+..++..+++.
T Consensus       211 THdl~~~~~~adr  223 (326)
T PRK11022        211 THDLALVAEAAHK  223 (326)
T ss_pred             eCCHHHHHHhCCE
Confidence            9999888765443

>PRK09087 hypothetical protein; Validated

Probab=98.64  E-value=6.9e-07  Score=80.43  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ..+.+.|+|++|+|||+|++.++..  ..     ..+++ ..      .....++                         
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~--~~-----~~~i~-~~------~~~~~~~-------------------------   83 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREK--SD-----ALLIH-PN------EIGSDAA-------------------------   83 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh--cC-----CEEec-HH------HcchHHH-------------------------
Confidence            3467999999999999999999876  21     12443 10      0001111                         


Q ss_pred             HHHHhCCCcEEEecCCCCH-HHHHHHHhHcC--CCCCCEEEEEeCC---------hHHHHHhcCCCceEEcCCCCChhHH
Q 015891          142 QQQLIGKRYLIVLDDFEDM-EVCKHLSKVLP--RGYGERLIITSRN---------EKLTTEMVGEENLHQLQPLSDQESC  209 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~~~-~~~~~l~~~l~--~~~gs~IIiTTR~---------~~v~~~~~~~~~~~~l~~L~~~e~~  209 (398)
                       ..+.  .-+|++||++.. ...+.+...+.  ...|..+|+|++.         .++.+.+ ....++++++++. +..
T Consensus        84 -~~~~--~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl-~~gl~~~l~~pd~-e~~  158 (226)
T PRK09087         84 -NAAA--EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRL-KAATVVEIGEPDD-ALL  158 (226)
T ss_pred             -Hhhh--cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHH-hCCceeecCCCCH-HHH
Confidence             0111  138889999732 01122333333  2347789998873         3344443 4567899999998 778


Q ss_pred             HHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          210 WLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       210 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..++.+.+...+...++   +...-|++++.|-..++..
T Consensus       159 ~~iL~~~~~~~~~~l~~---ev~~~La~~~~r~~~~l~~  194 (226)
T PRK09087        159 SQVIFKLFADRQLYVDP---HVVYYLVSRMERSLFAAQT  194 (226)
T ss_pred             HHHHHHHHHHcCCCCCH---HHHHHHHHHhhhhHHHHHH
Confidence            88888876554444433   3666777778777666543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.64  E-value=4.3e-07  Score=91.86  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..+++..+++. . ........+++++++..+++.+..++-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       375 ~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd  454 (501)
T PRK10762        375 VSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE  454 (501)
T ss_pred             HHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            45667777774 2 23334458999999999999999999999999999   4443333333332  2347889999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      .+.+..++
T Consensus       455 ~~~~~~~~  462 (501)
T PRK10762        455 MPEVLGMS  462 (501)
T ss_pred             HHHHHhhC
Confidence            88776653

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.64  E-value=6.4e-07  Score=82.30  Aligned_cols=79  Identities=18%  Similarity=0.222  Sum_probs=56.7

Q ss_pred             HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ..+++.+++..  ........+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..||++||+
T Consensus       129 ~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~  208 (253)
T TIGR02323       129 HDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD  208 (253)
T ss_pred             HHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            45566777642  12233448899999999999999999999999999   4444444444432   2247899999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      .+.+..+
T Consensus       209 ~~~~~~~  215 (253)
T TIGR02323       209 LGVARLL  215 (253)
T ss_pred             HHHHHHh
Confidence            8877654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.64  E-value=8.6e-06  Score=80.79  Aligned_cols=163  Identities=10%  Similarity=0.190  Sum_probs=98.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ...+.|+|+.|+|||+|++++++.  +....  ..++++.       ...+...+...++...            .....
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~-------~~~f~~~~~~~l~~~~------------~~~~~  199 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS-------GDEFARKAVDILQKTH------------KEIEQ  199 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE-------HHHHHHHHHHHHHHhh------------hHHHH
Confidence            456899999999999999999885  22211  1233443       2345555555443210            01122


Q ss_pred             HHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCCC
Q 015891          141 LQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLSD  205 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~~  205 (398)
                      +...+. +.-+||+||+..    ..+.+.+...+.  ...+..||+|+...         .+...+ ...-++.+++++.
T Consensus       200 ~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~-~~Gl~~~L~~pd~  277 (450)
T PRK14087        200 FKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF-NMGLSIAIQKLDN  277 (450)
T ss_pred             HHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH-hCCceeccCCcCH
Confidence            333333 456899999973    344455555554  33456788887643         222333 2356788999998


Q ss_pred             hhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          206 QESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       206 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                       ++...++.+.+...+... ....+...-|++.+.|.|..+..++
T Consensus       278 -e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL  320 (450)
T PRK14087        278 -KTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSV  320 (450)
T ss_pred             -HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHH
Confidence             778888887554332210 2234477889999999998876543

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.64  E-value=5.3e-07  Score=90.89  Aligned_cols=195  Identities=12%  Similarity=0.126  Sum_probs=105.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .+++|++..++.+...+..   ..-...+.++|+.|+||||+|+.+++...-..      |.. .. .+..-...+.+..
T Consensus        16 ~dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~-~~-~Cg~C~sCr~i~~   84 (605)
T PRK05896         16 KQIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKD-GD-CCNSCSVCESINT   84 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCC-CC-CCcccHHHHHHHc
Confidence            6789999999999998854   23346789999999999999999987621111      110 00 0000011111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEe-CChHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITS-RNEKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTT-R~~~v~~  189 (398)
                      ...............+.+..+..+...    ...++-++|+|+++.  ....+.|...+... ..+.+|++| ....+..
T Consensus        85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~  164 (605)
T PRK05896         85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL  164 (605)
T ss_pred             CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence            100000000000012233322222111    123455899999984  45556666666432 344555444 4444544


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......+++.+++. ++....+.+.+...+...++   +.+..+++.++|-+..+.
T Consensus       165 TI~SRcq~ieF~~Ls~-~eL~~~L~~il~kegi~Is~---eal~~La~lS~GdlR~Al  218 (605)
T PRK05896        165 TIISRCQRYNFKKLNN-SELQELLKSIAKKEKIKIED---NAIDKIADLADGSLRDGL  218 (605)
T ss_pred             HHHhhhhhcccCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHH
Confidence            4445567899999998 55666666655433322222   256678888888776443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.64  E-value=6.5e-07  Score=86.93  Aligned_cols=191  Identities=10%  Similarity=0.051  Sum_probs=105.4

Q ss_pred             CCcccchhhHHHHHHHHhccCC------CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGT------DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~------~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~  111 (398)
                      ++++|.+..++.|..++.....      ..-...+.++|++|+|||++|+.+++.  +......  .-. ........  
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~--~~~-Cg~C~~C~--   77 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD--EPG-CGECRACR--   77 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC--CCC-CCCCHHHH--
Confidence            4689999999999999975210      013567999999999999999999765  1111000  000 00000000  


Q ss_pred             HHHHHHHcCCCCCCCC----CcCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEE
Q 015891          112 VKRILKRLGVDDGTTN----SFEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLI  179 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~----~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~II  179 (398)
                        .+..   ...++..    .......++.+..+ +.+.     +++.++|+|+++  +....+.|...+. ..+++.+|
T Consensus        78 --~~~~---~~hpD~~~i~~~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI  151 (394)
T PRK07940         78 --TVLA---GTHPDVRVVAPEGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL  151 (394)
T ss_pred             --HHhc---CCCCCEEEeccccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence              0000   0000000    00012233333222 2222     345689999999  3444455555554 23456566


Q ss_pred             EEeCC-hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          180 ITSRN-EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       180 iTTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                      ++|.+ ..+...+......+.+.+++. +.....+.+..+.     +   .+.+..+++.++|.|.....++
T Consensus       152 L~a~~~~~llpTIrSRc~~i~f~~~~~-~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l~  214 (394)
T PRK07940        152 LCAPSPEDVLPTIRSRCRHVALRTPSV-EAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRLA  214 (394)
T ss_pred             EEECChHHChHHHHhhCeEEECCCCCH-HHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence            66655 445555555678999999998 5566555543221     1   1255677888999887766554

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.64  E-value=6e-07  Score=81.09  Aligned_cols=85  Identities=14%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             HHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCCh
Q 015891          114 RILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNE  185 (398)
Q Consensus       114 ~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~  185 (398)
                      .++..+++..  ........+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++||+.
T Consensus       127 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  206 (228)
T cd03257         127 LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL  206 (228)
T ss_pred             HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4556666632  12333458899999999999999999999999999   4444444444443   12378999999999


Q ss_pred             HHHHHhcCCCceEEc
Q 015891          186 KLTTEMVGEENLHQL  200 (398)
Q Consensus       186 ~v~~~~~~~~~~~~l  200 (398)
                      ..+..++  ++++.+
T Consensus       207 ~~~~~~~--d~i~~l  219 (228)
T cd03257         207 GVVAKIA--DRVAVM  219 (228)
T ss_pred             HHHHHhc--CeEEEE
Confidence            8776543  344544

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.64  E-value=4.6e-07  Score=91.70  Aligned_cols=132  Identities=15%  Similarity=0.108  Sum_probs=83.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc---------------ceEEEEe---------cCC----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV---------------PRIWVCT---------MSG----------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~---------------~~~~v~~---------v~~----------  104 (398)
                      .-.+++|+|++|+|||||++.++.-..- ..  .|+               ...++..         +.+          
T Consensus        29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  108 (501)
T PRK10762         29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN  108 (501)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence            4578999999999999999999754110 00  010               0111110         000          


Q ss_pred             ---ccc---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891          105 ---QKT---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R  172 (398)
Q Consensus       105 ---~~~---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~  172 (398)
                         ..+   ......++++.+++.... ......+.+++++..+.+++..++-+++||++.   |....+.+...+.  .
T Consensus       109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~  188 (501)
T PRK10762        109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK  188 (501)
T ss_pred             ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence               000   112345677778876532 233458999999999999999999999999999   4433333333332  2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..|..||++||+.+.+..+++
T Consensus       189 ~~~~tvii~sHd~~~~~~~~d  209 (501)
T PRK10762        189 SQGRGIVYISHRLKEIFEICD  209 (501)
T ss_pred             HCCCEEEEEeCCHHHHHHhCC
Confidence            347789999999887766533

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.64  E-value=7.5e-07  Score=80.63  Aligned_cols=130  Identities=15%  Similarity=0.256  Sum_probs=82.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-----Ccc--ccc---------eEEEEecCCcc--------cH---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-----KTQ--FVP---------RIWVCTMSGQK--------TA---------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-----~~~--F~~---------~~~v~~v~~~~--------~~---------  108 (398)
                      .-.+++|.|++|+|||||++.++.-...     ...  ++.         ...+.++.+..        +.         
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~   90 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR   90 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence            4568999999999999999999876221     110  110         00111111110        10         


Q ss_pred             ---------HHHHHHHHHHcCCCC----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          109 ---------ESIVKRILKRLGVDD----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       109 ---------~~~~~~il~~l~~~~----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                               .....++++.+++..    ........+.+++++..+.+.+..++-+++||++.   |....+.+...+. 
T Consensus        91 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~  170 (230)
T TIGR02770        91 SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE  170 (230)
T ss_pred             HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence                     111345566666652    12233448899999999999999999999999999   4444444444443 


Q ss_pred             --CCCCCEEEEEeCChHHHHHh
Q 015891          172 --RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~~  191 (398)
                        ...+..||++||+.+....+
T Consensus       171 ~~~~~~~tiii~sH~~~~~~~~  192 (230)
T TIGR02770       171 LRQLFGTGILLITHDLGVVARI  192 (230)
T ss_pred             HHHhcCCEEEEEeCCHHHHHHh
Confidence              12377899999998877654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.64  E-value=5.2e-07  Score=79.48  Aligned_cols=129  Identities=13%  Similarity=0.126  Sum_probs=79.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-------eEEEEecCCc------ccH-------------HHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-------RIWVCTMSGQ------KTA-------------ESIV  112 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-------~~~v~~v~~~------~~~-------------~~~~  112 (398)
                      .-.+++|+|++|+|||||++.++...... .  .++.       ...+.++.+.      .+.             ....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~  104 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETL  104 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHH
Confidence            45689999999999999999997652110 0  0100       0001111111      011             1123


Q ss_pred             HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891          113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK  186 (398)
Q Consensus       113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~  186 (398)
                      ..+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||+..
T Consensus       105 ~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  184 (195)
T PRK13541        105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES  184 (195)
T ss_pred             HHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            445566666432 2223347889999999999999999999999999   4444444444442  235788999999886


Q ss_pred             HHHH
Q 015891          187 LTTE  190 (398)
Q Consensus       187 v~~~  190 (398)
                      ....
T Consensus       185 ~i~~  188 (195)
T PRK13541        185 SIKS  188 (195)
T ss_pred             ccch
Confidence            5443

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.64  E-value=5e-07  Score=91.41  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=58.7

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++..+++..  ........+++++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       383 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd  462 (500)
T TIGR02633       383 IGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE  462 (500)
T ss_pred             HHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            456777788753  23344458999999999999999999999999999   4443333333322  2347789999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      ......++
T Consensus       463 ~~~~~~~~  470 (500)
T TIGR02633       463 LAEVLGLS  470 (500)
T ss_pred             HHHHHHhC
Confidence            98777653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.63  E-value=1.1e-06  Score=89.25  Aligned_cols=193  Identities=11%  Similarity=0.041  Sum_probs=106.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-......        .....-.....+..
T Consensus        13 ~eivGq~~i~~~L~~~i~~---~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--------~pCg~C~~C~~i~~   81 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDA---GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA--------TPCGVCESCVALAP   81 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC--------CcccccHHHHHhhc
Confidence            6789999999999999964   223446789999999999999999876211111000        00000000011110


Q ss_pred             HcCCCCC--CCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEE-EEeCChHH
Q 015891          118 RLGVDDG--TTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLI-ITSRNEKL  187 (398)
Q Consensus       118 ~l~~~~~--~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~II-iTTR~~~v  187 (398)
                      .-+...+  ........+.+..+......    ...+.-++|+|+++  +....+.|...+..- ..+.+| +||....+
T Consensus        82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl  161 (584)
T PRK14952         82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV  161 (584)
T ss_pred             ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence            0000000  00000011233332221111    13456799999998  556666676666532 345555 45454556


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      ...+......|++.+++. ++....+.+.+...+...++   +.+..|++.++|-+..
T Consensus       162 l~TI~SRc~~~~F~~l~~-~~i~~~L~~i~~~egi~i~~---~al~~Ia~~s~GdlR~  215 (584)
T PRK14952        162 LPTIRSRTHHYPFRLLPP-RTMRALIARICEQEGVVVDD---AVYPLVIRAGGGSPRD  215 (584)
T ss_pred             HHHHHHhceEEEeeCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHH
Confidence            655555678899999998 55666666655443333222   2556677888887753

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.63  E-value=6.6e-07  Score=86.28  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccc---------------eEEEEecCCc------ccH---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVP---------------RIWVCTMSGQ------KTA---------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~---------------~~~v~~v~~~------~~~---------  108 (398)
                      .-.+++|+|++|+|||||++.++.-.... ..  |+.               ...+.++.+.      .+.         
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  101 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK  101 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence            34689999999999999999997642110 00  000               0001111111      011         


Q ss_pred             -------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891          109 -------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY  174 (398)
Q Consensus       109 -------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~  174 (398)
                             .....++++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...
T Consensus       102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~  181 (354)
T TIGR02142       102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF  181 (354)
T ss_pred             ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence                   1124566777777542 2233458999999999999999999999999999   4444444443332   223


Q ss_pred             CCEEEEEeCChHHHHHhcC
Q 015891          175 GERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~  193 (398)
                      +..||++||+.+.+..+++
T Consensus       182 g~tiiivtH~~~~~~~~~d  200 (354)
T TIGR02142       182 GIPILYVSHSLQEVLRLAD  200 (354)
T ss_pred             CCEEEEEecCHHHHHHhCC
Confidence            7789999999887766433

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=7e-07  Score=83.07  Aligned_cols=129  Identities=22%  Similarity=0.185  Sum_probs=83.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc----------------ceEEEEecCCcc-------c--------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV----------------PRIWVCTMSGQK-------T--------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~----------------~~~~v~~v~~~~-------~--------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  |+                .+.++.   +..       +        
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~---q~~~~~~~~~tv~e~i~~~  103 (275)
T PRK13639         27 KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVF---QNPDDQLFAPTVEEDVAFG  103 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEe---eChhhhhccccHHHHHHHH
Confidence            4568999999999999999999754111 000  00                011221   110       0        


Q ss_pred             ----------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          108 ----------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       108 ----------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                                .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.  
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  183 (275)
T PRK13639        104 PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL  183 (275)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                      01223456666776542 2333458999999999999999999999999999   4444444444433  


Q ss_pred             CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...|..||++||+...+..+++
T Consensus       184 ~~~~~til~vtH~~~~~~~~~d  205 (275)
T PRK13639        184 NKEGITIIISTHDVDLVPVYAD  205 (275)
T ss_pred             HHCCCEEEEEecCHHHHHHhCC
Confidence            1247889999999887665433

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.63  E-value=8.8e-07  Score=81.11  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...+.+||++||+......+
T Consensus       145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~  211 (248)
T PRK09580        145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYI  211 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence            47899999999999999999999999999   4444444444332  23478999999998877653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.6e-07  Score=79.62  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=79.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCC---------------CCccc-cceEEEEe-------------------cCCccc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPD---------------VKTQF-VPRIWVCT-------------------MSGQKT  107 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~---------------~~~~F-~~~~~v~~-------------------v~~~~~  107 (398)
                      -.++.|.|++|+|||||.+.++.=.+               ....| ....|+..                   +... .
T Consensus        28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~-~  106 (209)
T COG4133          28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS-G  106 (209)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC-C
Confidence            45788999999999999999964200               01111 01111110                   0000 1


Q ss_pred             HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEE
Q 015891          108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIIT  181 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiT  181 (398)
                      ....+.+.+..+++..-. .+-...+.+++.+..+++..-.++-|.|||++.   |.+....+...+.  ...|.-||.|
T Consensus       107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt  186 (209)
T COG4133         107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT  186 (209)
T ss_pred             chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            122344555666665532 223347889999999999999999999999998   5565556665554  3568899999


Q ss_pred             eCChH
Q 015891          182 SRNEK  186 (398)
Q Consensus       182 TR~~~  186 (398)
                      ||.+-
T Consensus       187 tHq~l  191 (209)
T COG4133         187 THQPL  191 (209)
T ss_pred             cCCcc
Confidence            99773

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.63  E-value=6.6e-07  Score=82.47  Aligned_cols=130  Identities=17%  Similarity=0.179  Sum_probs=81.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc--------------ceEEEEecC---Cccc--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV--------------PRIWVCTMS---GQKT--------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~--------------~~~~v~~v~---~~~~--------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ...  ++              ...++..-.   ...+              
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  106 (258)
T PRK13548         27 PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL  106 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence            4568999999999999999999765211 000  00              011111000   0000              


Q ss_pred             ----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHh------CCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          108 ----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLI------GKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       108 ----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                          .......+++.+++... .......+.+++++..+.+.+.      .++-+++||++.   |....+.+...+.  
T Consensus       107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  186 (258)
T PRK13548        107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL  186 (258)
T ss_pred             CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                11234556666776542 2233458899999999999998      589999999999   4444444444433  


Q ss_pred             C-CCCCEEEEEeCChHHHHHh
Q 015891          172 R-GYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       172 ~-~~gs~IIiTTR~~~v~~~~  191 (398)
                      . ..+..||++||+......+
T Consensus       187 ~~~~~~tiii~sH~~~~~~~~  207 (258)
T PRK13548        187 AHERGLAVIVVLHDLNLAARY  207 (258)
T ss_pred             HHhcCCEEEEEECCHHHHHHh
Confidence            1 3477899999998877654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.63  E-value=2.9e-07  Score=78.09  Aligned_cols=124  Identities=21%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      .-.+++|.|++|+|||||++.+...  . ......+++....-. ....    .....++.-.      ..+.++.++..
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~----~~~~~i~~~~------qlS~G~~~r~~   90 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLE----ELRRRIGYVP------QLSGGQRQRVA   90 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHH----HHHhceEEEe------eCCHHHHHHHH
Confidence            3478999999999999999999886  2 234455555411100 0111    1112222111      15788899999


Q ss_pred             HHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          141 LQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      +.+.+..++-++++|++.   |......+...+.  ...+..+|++||+......++  ++++.+
T Consensus        91 l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~--d~i~~l  153 (157)
T cd00267          91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAA--DRVIVL  153 (157)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC--CEEEEE
Confidence            999999999999999999   4444444444332  123678999999998877642  344444

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.63  E-value=4.6e-07  Score=82.13  Aligned_cols=131  Identities=17%  Similarity=0.194  Sum_probs=83.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--cc------------ceEEEEe---cCCcccH---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FV------------PRIWVCT---MSGQKTA---------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~------------~~~~v~~---v~~~~~~---------------  108 (398)
                      .-.+++|.|++|+|||||++.++...... ..  |+            ...++..   +-...+.               
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~  104 (232)
T cd03300          25 EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK  104 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence            45789999999999999999997652111 00  10            0111110   0000010               


Q ss_pred             ---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          109 ---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       109 ---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                         ......+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...|.+|
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti  184 (232)
T cd03300         105 AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF  184 (232)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence               1123455666777542 2223458899999999999999999999999999   4444444444443   2237899


Q ss_pred             EEEeCChHHHHHhc
Q 015891          179 IITSRNEKLTTEMV  192 (398)
Q Consensus       179 IiTTR~~~v~~~~~  192 (398)
                      |++||+......++
T Consensus       185 ii~sh~~~~~~~~~  198 (232)
T cd03300         185 VFVTHDQEEALTMS  198 (232)
T ss_pred             EEEeCCHHHHHHhc
Confidence            99999998766543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00202 tuzin; Provisional

Probab=98.63  E-value=3.1e-07  Score=88.04  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=98.1

Q ss_pred             CCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHH
Q 015891           33 KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIV  112 (398)
Q Consensus        33 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~  112 (398)
                      .+.++..|+||++++..|...|... +....+++.|.|++|+|||||++.+.....    +  ..++.+..   ...+++
T Consensus       257 lPa~~~~FVGReaEla~Lr~VL~~~-d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr---g~eElL  326 (550)
T PTZ00202        257 APAVIRQFVSREAEESWVRQVLRRL-DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR---GTEDTL  326 (550)
T ss_pred             CCCCccCCCCcHHHHHHHHHHHhcc-CCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC---CHHHHH
Confidence            4445688999999999999999752 333456999999999999999999997732    1  13333233   678999


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-h-CCCcEEEecCCC--CH--HHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-I-GKRYLIVLDDFE--DM--EVCKHLSKVLPRGYGERLIITSRNEK  186 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVLDdv~--~~--~~~~~l~~~l~~~~gs~IIiTTR~~~  186 (398)
                      ..++..||.+.....   ..-...+...+.+.- . +++.+||+-=-+  +.  -.-+.+. +--...-|.|++----+.
T Consensus       327 r~LL~ALGV~p~~~k---~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evples  402 (550)
T PTZ00202        327 RSVVKALGVPNVEAC---GDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLES  402 (550)
T ss_pred             HHHHHHcCCCCcccH---HHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhh
Confidence            999999998543211   111222333333322 2 455666654322  22  1111211 111334677877665554


Q ss_pred             HHHHh--cCCCceEEcCCCCChhHHHHHH
Q 015891          187 LTTEM--VGEENLHQLQPLSDQESCWLIY  213 (398)
Q Consensus       187 v~~~~--~~~~~~~~l~~L~~~e~~~~l~  213 (398)
                      +....  ...-..|-+++++..+ +..+.
T Consensus       403 lt~~~~~lprldf~~vp~fsr~q-af~y~  430 (550)
T PTZ00202        403 LTIANTLLPRLDFYLVPNFSRSQ-AFAYT  430 (550)
T ss_pred             cchhcccCccceeEecCCCCHHH-HHHHH
Confidence            43322  1224568888888844 44433

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=6e-07  Score=83.09  Aligned_cols=130  Identities=12%  Similarity=0.097  Sum_probs=82.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc--------------ceEEEEec-C--Cccc--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV--------------PRIWVCTM-S--GQKT--------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~--------------~~~~v~~v-~--~~~~--------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+              ...++..- .  ...+              
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  115 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHG  115 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccc
Confidence            4578999999999999999999754210 00  000              01111100 0  0000              


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              .......++..+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       116 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~  195 (265)
T PRK10575        116 ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ  195 (265)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                    11234556666766432 2233458999999999999999999999999999   4444444444432   2


Q ss_pred             CCCCEEEEEeCChHHHHHh
Q 015891          173 GYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..+..||++||+......+
T Consensus       196 ~~~~tiii~sH~~~~i~~~  214 (265)
T PRK10575        196 ERGLTVIAVLHDINMAARY  214 (265)
T ss_pred             hcCCEEEEEeCCHHHHHHh
Confidence            2378899999998877654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.63  E-value=6.1e-07  Score=83.12  Aligned_cols=131  Identities=15%  Similarity=0.160  Sum_probs=82.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc-----------eEEEEecCCcc---------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP-----------RIWVCTMSGQK---------------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-----------~~~v~~v~~~~---------------------  106 (398)
                      .-.+++|+|++|+|||||++.+..-... ...  ++.           ..-+.++.+..                     
T Consensus        38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~  117 (267)
T PRK15112         38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN  117 (267)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence            4568999999999999999999754210 000  000           00011111110                     


Q ss_pred             ------cHHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          107 ------TAESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       107 ------~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                            .......++++.+++..  ........+.++.++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  197 (267)
T PRK15112        118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE  197 (267)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                  00122345677777742  12223458899999999999999999999999999   4444444444443   1


Q ss_pred             CCCCEEEEEeCChHHHHHhc
Q 015891          173 GYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..|..||++||+.+....++
T Consensus       198 ~~g~tviivsH~~~~~~~~~  217 (267)
T PRK15112        198 KQGISYIYVTQHLGMMKHIS  217 (267)
T ss_pred             HcCcEEEEEeCCHHHHHHhc
Confidence            23778999999988777643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.63  E-value=6.4e-07  Score=77.99  Aligned_cols=117  Identities=16%  Similarity=0.199  Sum_probs=73.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE------------------ecCCcc-----cH-HHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC------------------TMSGQK-----TA-ESIVKRILK  117 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~------------------~v~~~~-----~~-~~~~~~il~  117 (398)
                      .-.+++|.|++|+|||||++.+..-..   ...+.+++.                  ++.+..     .. ......+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~  101 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL  101 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence            456899999999999999999987521   112222222                  111110     00 011111110


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..          ..+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||+......+
T Consensus       102 ~~----------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  170 (182)
T cd03215         102 SS----------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL  170 (182)
T ss_pred             Hh----------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            00          05778889999999999999999999998   4444444444443  22478999999998766654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.63  E-value=8.1e-07  Score=90.57  Aligned_cols=200  Identities=13%  Similarity=0.123  Sum_probs=111.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il  116 (398)
                      ++++|.+..++.|...+..   ..-...+.++|+.|+||||+|+.+++...-...... ..-+.    ....-.....+.
T Consensus        24 ~dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~   96 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIM   96 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHh
Confidence            6789999999999999964   223557899999999999999999886211111100 00000    000000111121


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEe-CChHHH
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITS-RNEKLT  188 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTT-R~~~v~  188 (398)
                      .....+.......+..+.+..+..+...    +..++-++|+|+++  +....+.|...+.. ..++++|++| ....+.
T Consensus        97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll  176 (598)
T PRK09111         97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP  176 (598)
T ss_pred             cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence            1111100000000112344433332221    12356789999998  44556666666642 3456665555 444555


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+......+++.+++. ++....+.+.+...+....+   +.+..|++.++|-+..+..
T Consensus       177 ~tI~SRcq~~~f~~l~~-~el~~~L~~i~~kegi~i~~---eAl~lIa~~a~Gdlr~al~  232 (598)
T PRK09111        177 VTVLSRCQRFDLRRIEA-DVLAAHLSRIAAKEGVEVED---EALALIARAAEGSVRDGLS  232 (598)
T ss_pred             HHHHhheeEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            55545567899999998 66777777655444433333   3667788888888866543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.62  E-value=4.7e-07  Score=83.57  Aligned_cols=132  Identities=14%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccce-EEEE-e--cCCc---------------ccHH---HHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPR-IWVC-T--MSGQ---------------KTAE---SIVKRIL  116 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~-~~v~-~--v~~~---------------~~~~---~~~~~il  116 (398)
                      .-.+++|.|++|+|||||++.++.......   .++.. .++. .  +...               ....   .....++
T Consensus        49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l  128 (264)
T PRK13546         49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKII  128 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            456899999999999999999987621110   01110 1110 0  0000               0111   1122344


Q ss_pred             HHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891          117 KRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       117 ~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~  190 (398)
                      +.+++.... ......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||+...+..
T Consensus       129 ~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~  208 (264)
T PRK13546        129 EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQ  208 (264)
T ss_pred             HHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            555554321 223347899999999999999999999999999   4433333333332  2347899999999887766


Q ss_pred             hcC
Q 015891          191 MVG  193 (398)
Q Consensus       191 ~~~  193 (398)
                      +++
T Consensus       209 ~~d  211 (264)
T PRK13546        209 FCT  211 (264)
T ss_pred             HcC
Confidence            533

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=5.6e-07  Score=91.18  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++..+++..  ........+++++++..+.+.+..++-++|||++.   |....+.+...+.  ...|..||++||+
T Consensus       385 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd  464 (506)
T PRK13549        385 ILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE  464 (506)
T ss_pred             HHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            456677777742  23334568999999999999999999999999999   4433333333332  1347889999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      .+.+..+++
T Consensus       465 ~~~~~~~~d  473 (506)
T PRK13549        465 LPEVLGLSD  473 (506)
T ss_pred             HHHHHHhCC
Confidence            887776533

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.62  E-value=6e-07  Score=91.06  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=58.9

Q ss_pred             HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ..++++.+++.... ......+++++++..+.+.+..++-+++||++.   |......+...+.  ...|..||++||+.
T Consensus       126 ~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~  205 (510)
T PRK09700        126 AAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL  205 (510)
T ss_pred             HHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            45567777776432 223458999999999999999999999999999   4444444433332  23478899999998


Q ss_pred             HHHHHhcC
Q 015891          186 KLTTEMVG  193 (398)
Q Consensus       186 ~v~~~~~~  193 (398)
                      +.+..+++
T Consensus       206 ~~~~~~~d  213 (510)
T PRK09700        206 AEIRRICD  213 (510)
T ss_pred             HHHHHhCC
Confidence            87776543

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=2.2e-07  Score=85.48  Aligned_cols=82  Identities=11%  Similarity=0.139  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ...++..+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...+..||++||+.
T Consensus       119 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~  198 (255)
T PRK11231        119 VNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL  198 (255)
T ss_pred             HHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3455666666432 2223448899999999999999999999999999   4444444444443  22478899999998


Q ss_pred             HHHHHhcC
Q 015891          186 KLTTEMVG  193 (398)
Q Consensus       186 ~v~~~~~~  193 (398)
                      .....+++
T Consensus       199 ~~~~~~~d  206 (255)
T PRK11231        199 NQASRYCD  206 (255)
T ss_pred             HHHHHhcC
Confidence            87665433

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.61  E-value=6.6e-07  Score=90.76  Aligned_cols=87  Identities=14%  Similarity=0.136  Sum_probs=62.0

Q ss_pred             HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..+++..+++. . ........+++++++..+++.+..++-++|||++.   |....+.+...+.  ...|..||++||+
T Consensus       389 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd  468 (510)
T PRK09700        389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE  468 (510)
T ss_pred             HHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            45677778875 3 23344558999999999999999999999999999   4444444444432  2347889999999


Q ss_pred             hHHHHHhcCCCceEEc
Q 015891          185 EKLTTEMVGEENLHQL  200 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l  200 (398)
                      ...+..++  ++++.+
T Consensus       469 ~~~~~~~~--d~i~~l  482 (510)
T PRK09700        469 LPEIITVC--DRIAVF  482 (510)
T ss_pred             HHHHHhhC--CEEEEE
Confidence            88776653  344444

>PRK05642 DNA replication initiation factor; Validated

Probab=98.61  E-value=1.1e-06  Score=79.63  Aligned_cols=148  Identities=19%  Similarity=0.225  Sum_probs=84.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~  142 (398)
                      ...+.|+|+.|+|||.|++++++.  ....-..++|++ ..      ++...                   .    ..+.
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~-~~------~~~~~-------------------~----~~~~   92 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLP-LA------ELLDR-------------------G----PELL   92 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEee-HH------HHHhh-------------------h----HHHH
Confidence            467899999999999999999875  222223355665 21      11110                   0    1122


Q ss_pred             HHHhCCCcEEEecCCC----CHHHHHHHHhHcC--CCCCCEEEEEeCChH---------HHHHhcCCCceEEcCCCCChh
Q 015891          143 QQLIGKRYLIVLDDFE----DMEVCKHLSKVLP--RGYGERLIITSRNEK---------LTTEMVGEENLHQLQPLSDQE  207 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~----~~~~~~~l~~~l~--~~~gs~IIiTTR~~~---------v~~~~~~~~~~~~l~~L~~~e  207 (398)
                      +.+.+ --+||+||+.    ...+.+.+...+.  ...|..+|+|++...         +.+.+ ....++++++++. +
T Consensus        93 ~~~~~-~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl-~~gl~~~l~~~~~-e  169 (234)
T PRK05642         93 DNLEQ-YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL-TLALVFQMRGLSD-E  169 (234)
T ss_pred             Hhhhh-CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH-hcCeeeecCCCCH-H
Confidence            22222 2478999997    2344455555554  335678899887532         12222 2346789999998 6


Q ss_pred             HHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          208 SCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +...++++.+.......++   +...-|++++.|-...+..
T Consensus       170 ~~~~il~~ka~~~~~~l~~---ev~~~L~~~~~~d~r~l~~  207 (234)
T PRK05642        170 DKLRALQLRASRRGLHLTD---EVGHFILTRGTRSMSALFD  207 (234)
T ss_pred             HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence            6776666322222233332   3566677777666655443

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=1.3e-06  Score=81.13  Aligned_cols=71  Identities=8%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..++  ++++.+.
T Consensus       153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~--d~i~~l~  227 (269)
T PRK14259        153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVS--DMTAFFN  227 (269)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc--CEEEEEe
Confidence            347889999999999999999999999999   4444444444443 123578999999988776653  4555554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.61  E-value=6.2e-07  Score=91.20  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             HHHHHHcCCCC------CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEE
Q 015891          113 KRILKRLGVDD------GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLII  180 (398)
Q Consensus       113 ~~il~~l~~~~------~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIi  180 (398)
                      ..++..+++..      ........+++++++..+.+.+..++-+||||++.   |....+.+...+.   ...|..||+
T Consensus       404 ~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~  483 (520)
T TIGR03269       404 VITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII  483 (520)
T ss_pred             HHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence            45667777753      12334458999999999999999999999999999   4444444444443   223788999


Q ss_pred             EeCChHHHHHhcCCCceEEc
Q 015891          181 TSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       181 TTR~~~v~~~~~~~~~~~~l  200 (398)
                      +||+.+.+..++  ++++.+
T Consensus       484 vsHd~~~~~~~~--d~i~~l  501 (520)
T TIGR03269       484 VSHDMDFVLDVC--DRAALM  501 (520)
T ss_pred             EeCCHHHHHHhC--CEEEEE
Confidence            999998877653  344444

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.61  E-value=8.1e-07  Score=90.98  Aligned_cols=136  Identities=17%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCcc-------cH----------------HHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQK-------TA----------------ESIVKRI  115 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~~-------~~----------------~~~~~~i  115 (398)
                      .-.+++|+|++|+|||||++.++....- ..  .|....-+.++.+..       +.                ......+
T Consensus       349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  428 (556)
T PRK11819        349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY  428 (556)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence            4568999999999999999999865211 11  111110111122110       11                1122356


Q ss_pred             HHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          116 LKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       116 l~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      +..+++...  .......+++++++..+.+.+..++-+++||++.   |....+.+...+..-.+ .||++||+...+..
T Consensus       429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~~~  507 (556)
T PRK11819        429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPG-CAVVISHDRWFLDR  507 (556)
T ss_pred             HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence            777777532  3334458999999999999999999999999999   45555555555542234 69999999988776


Q ss_pred             hcCCCceEEc
Q 015891          191 MVGEENLHQL  200 (398)
Q Consensus       191 ~~~~~~~~~l  200 (398)
                      ++  ++++.+
T Consensus       508 ~~--d~i~~l  515 (556)
T PRK11819        508 IA--THILAF  515 (556)
T ss_pred             hC--CEEEEE
Confidence            53  344555

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.61  E-value=5e-07  Score=86.87  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc---------------eEEEEecCCc------cc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP---------------RIWVCTMSGQ------KT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~---------------~~~v~~v~~~------~~----------  107 (398)
                      .-.+++|.|++|+|||||.+.+..-.....   .|+.               .-.+.++.+.      .+          
T Consensus        18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~   97 (363)
T TIGR01186        18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE   97 (363)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence            457899999999999999999975421000   0000               0001111110      01          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              ..+...++++.+++... ...+...+++++++..+.+.|..++-++++|++.   |....+.+...+.   .
T Consensus        98 ~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~  177 (363)
T TIGR01186        98 LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA  177 (363)
T ss_pred             HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence                    12234566777777542 2334458999999999999999999999999999   4443334433332   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..+.+||++||+.+.+..+++
T Consensus       178 ~~~~Tii~vTHd~~ea~~~~d  198 (363)
T TIGR01186       178 TLQKTIVFITHDLDEAIRIGD  198 (363)
T ss_pred             hcCCEEEEEeCCHHHHHHhCC
Confidence            347889999999987766543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=6e-07  Score=91.47  Aligned_cols=136  Identities=19%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc--------ccH-------------HHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ--------KTA-------------ESIVKRILK  117 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~--------~~~-------------~~~~~~il~  117 (398)
                      .-.+++|+|++|+|||||++.++.-..- ..  .|....-+.++.+.        ...             ......++.
T Consensus       344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~  423 (530)
T PRK15064        344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG  423 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence            4568999999999999999999865211 11  12211111111111        011             123445667


Q ss_pred             HcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhc
Q 015891          118 RLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       118 ~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      .+++..  ........+++++++..+.+.+..++-+++||++.   |....+.+...+..- +..||++||+...+..++
T Consensus       424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~~~~~~  502 (530)
T PRK15064        424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EGTLIFVSHDREFVSSLA  502 (530)
T ss_pred             HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhC
Confidence            777632  23334558999999999999999999999999999   445555555555422 348999999998887754


Q ss_pred             CCCceEEc
Q 015891          193 GEENLHQL  200 (398)
Q Consensus       193 ~~~~~~~l  200 (398)
                        ++++.+
T Consensus       503 --d~i~~l  508 (530)
T PRK15064        503 --TRIIEI  508 (530)
T ss_pred             --CEEEEE
Confidence              344444

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.61  E-value=6.3e-07  Score=80.35  Aligned_cols=153  Identities=20%  Similarity=0.317  Sum_probs=86.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCcccc--ceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV--PRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY  139 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  139 (398)
                      ....+.|+|+.|+|||.|++++++.  ......  .+++++       ...+...+...+.-.          .    ..
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~-------~~~f~~~~~~~~~~~----------~----~~   89 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS-------AEEFIREFADALRDG----------E----IE   89 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE-------HHHHHHHHHHHHHTT----------S----HH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec-------HHHHHHHHHHHHHcc----------c----ch
Confidence            4556889999999999999999887  433222  244544       334444444443211          1    12


Q ss_pred             HHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCC
Q 015891          140 VLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLS  204 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~  204 (398)
                      .+...+. .--+|++||++..    .+.+.+...+.  ...|.++|+|++..         ++.+.+ .....+++++++
T Consensus        90 ~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl-~~Gl~~~l~~pd  167 (219)
T PF00308_consen   90 EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL-SWGLVVELQPPD  167 (219)
T ss_dssp             HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH-HCSEEEEE----
T ss_pred             hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH-hhcchhhcCCCC
Confidence            2333343 5679999999832    34455555554  34577999999643         344444 346689999998


Q ss_pred             ChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          205 DQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       205 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      . +....++.+.+...+...+++   +..-|++.+.+..
T Consensus       168 ~-~~r~~il~~~a~~~~~~l~~~---v~~~l~~~~~~~~  202 (219)
T PF00308_consen  168 D-EDRRRILQKKAKERGIELPEE---VIEYLARRFRRDV  202 (219)
T ss_dssp             H-HHHHHHHHHHHHHTT--S-HH---HHHHHHHHTTSSH
T ss_pred             H-HHHHHHHHHHHHHhCCCCcHH---HHHHHHHhhcCCH
Confidence            8 667777776554444433332   4444555554433

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.60  E-value=8.8e-07  Score=90.68  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ....+++++++..+.+.+..++-+++||++.   |....+.+...+... +..||++||+.+....+++
T Consensus       159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-~~tvIiisHd~~~~~~~~d  226 (552)
T TIGR03719       159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PGTVVAVTHDRYFLDNVAG  226 (552)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhcC
Confidence            3458999999999999999999999999999   445444555555422 2489999999988776543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=7.2e-07  Score=90.35  Aligned_cols=132  Identities=14%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC---Ccc--ccc---------------eEEEEe---cCCc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV---KTQ--FVP---------------RIWVCT---MSGQ-------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~~--F~~---------------~~~v~~---v~~~-------------  105 (398)
                      .-.+++|+|++|+|||||++.++.-...   ...  |+.               ..++..   +...             
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  109 (506)
T PRK13549         30 AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI  109 (506)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence            4568999999999999999999775221   110  110               111110   0000             


Q ss_pred             -----cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          106 -----KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       106 -----~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                           ..   ......+++..+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.  
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l  189 (506)
T PRK13549        110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL  189 (506)
T ss_pred             cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence                 00   11234567777777543 2233458999999999999999999999999999   4433333333332  


Q ss_pred             CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...|..||++||+...+..+++
T Consensus       190 ~~~~~tvi~~tH~~~~~~~~~d  211 (506)
T PRK13549        190 KAHGIACIYISHKLNEVKAISD  211 (506)
T ss_pred             HHCCCEEEEEeCcHHHHHHhcC
Confidence            2347789999999887766533

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.60  E-value=9.2e-07  Score=81.71  Aligned_cols=81  Identities=15%  Similarity=0.143  Sum_probs=58.1

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ..++++.+++... .......+.+++++..+.+.+..++-+|+||++.   |....+.+...+.   ...|..||++||+
T Consensus       133 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~  212 (262)
T PRK09984        133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ  212 (262)
T ss_pred             HHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4556666776532 2233448899999999999999999999999999   4454445544443   1237899999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      ...+..++
T Consensus       213 ~~~~~~~~  220 (262)
T PRK09984        213 VDYALRYC  220 (262)
T ss_pred             HHHHHHhC
Confidence            98766543

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=5.9e-07  Score=83.52  Aligned_cols=129  Identities=17%  Similarity=0.153  Sum_probs=80.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEecCCcc-------c------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCTMSGQK-------T------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~v~~~~-------~------------  107 (398)
                      .-.+++|.|++|+|||||++.++.-.... .  .|+.            ...+.++.+..       +            
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~  106 (274)
T PRK13644         27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL  106 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence            45689999999999999999997642110 0  0000            00011011100       0            


Q ss_pred             ------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891          108 ------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG  175 (398)
Q Consensus       108 ------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g  175 (398)
                            .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.  ...|
T Consensus       107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g  186 (274)
T PRK13644        107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG  186 (274)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence                  11223455666676542 2223448899999999999999999999999999   4433333333332  2347


Q ss_pred             CEEEEEeCChHHHHH
Q 015891          176 ERLIITSRNEKLTTE  190 (398)
Q Consensus       176 s~IIiTTR~~~v~~~  190 (398)
                      .+||++||+.+.+..
T Consensus       187 ~til~~tH~~~~~~~  201 (274)
T PRK13644        187 KTIVYITHNLEELHD  201 (274)
T ss_pred             CEEEEEecCHHHHhh
Confidence            899999999887743

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.60  E-value=7.4e-07  Score=90.16  Aligned_cols=82  Identities=15%  Similarity=0.151  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          111 IVKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       111 ~~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ....++..+++. . ........+++++++..+.+.+..++-+|+||++.   |....+.+...+.  ...|..||++||
T Consensus       375 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH  454 (501)
T PRK11288        375 NADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS  454 (501)
T ss_pred             HHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence            345677778873 2 23334558999999999999999999999999999   4444444443332  234778999999


Q ss_pred             ChHHHHHhc
Q 015891          184 NEKLTTEMV  192 (398)
Q Consensus       184 ~~~v~~~~~  192 (398)
                      +.+....++
T Consensus       455 d~~~~~~~~  463 (501)
T PRK11288        455 DLPEVLGVA  463 (501)
T ss_pred             CHHHHHhhC
Confidence            998877653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.60  E-value=5e-07  Score=79.83  Aligned_cols=124  Identities=17%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-------------ceEEEEe---cCCcccH--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-------------PRIWVCT---MSGQKTA--------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-------------~~~~v~~---v~~~~~~--------------  108 (398)
                      .-.+++|+|++|+|||||++.+...... ...  |+             ...++..   .....+.              
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  104 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGA  104 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCc
Confidence            4678999999999999999999765210 000  00             0111110   0000011              


Q ss_pred             HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891          109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS  182 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT  182 (398)
                      ......+++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++|
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s  184 (198)
T TIGR01189       105 QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT  184 (198)
T ss_pred             HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence            1123455666666542 2223347889999999999999999999999999   4444444444442  23467899999


Q ss_pred             CCh
Q 015891          183 RNE  185 (398)
Q Consensus       183 R~~  185 (398)
                      |+.
T Consensus       185 H~~  187 (198)
T TIGR01189       185 HQD  187 (198)
T ss_pred             ccc
Confidence            977

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.60  E-value=4.3e-07  Score=93.13  Aligned_cols=131  Identities=13%  Similarity=0.204  Sum_probs=84.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC-CCcc-------------ccc----------------eEE-EEecCCcc----
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQ-------------FVP----------------RIW-VCTMSGQK----  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~-------------F~~----------------~~~-v~~v~~~~----  106 (398)
                      .-.+++|+|++|+|||||++.+..... ....             |..                ..+ ..++....    
T Consensus        98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~  177 (590)
T PRK13409         98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK  177 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence            456999999999999999999976511 0111             111                000 00011100    


Q ss_pred             -cH---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          107 -TA---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       107 -~~---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                       +.         .....++++.+++... .......++++.++..+.+.+..++-+++||++.   |......+...+. 
T Consensus       178 ~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~  257 (590)
T PRK13409        178 GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE  257 (590)
T ss_pred             chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence             11         1234567777777643 2233458999999999999999999999999998   4444444443333 


Q ss_pred             -CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 -RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                       .. +..||++||+...+..+++
T Consensus       258 l~~-g~tvIivsHd~~~l~~~~D  279 (590)
T PRK13409        258 LAE-GKYVLVVEHDLAVLDYLAD  279 (590)
T ss_pred             HHC-CCEEEEEeCCHHHHHHhCC
Confidence             23 7889999999988876543

>PLN03073 ABC transporter F family; Provisional

Probab=98.60  E-value=6.7e-07  Score=93.51  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCcc--------c------------HHHHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQK--------T------------AESIVKRILKR  118 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~~--------~------------~~~~~~~il~~  118 (398)
                      .-.+++|+|++|+|||||++.+...... ...  +....-+.++.+..        .            .......++..
T Consensus       534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~  613 (718)
T PLN03073        534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  613 (718)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4458999999999999999999875211 110  11101111111110        0            11234566777


Q ss_pred             cCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          119 LGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       119 l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      +++..  ........+++++++..+.+.+..++-+||||++.   |....+.+...+.... ..||++||+...+..++ 
T Consensus       614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~-gtvIivSHd~~~i~~~~-  691 (718)
T PLN03073        614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQ-GGVLMVSHDEHLISGSV-  691 (718)
T ss_pred             CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhC-
Confidence            77753  23334458999999999999999999999999999   4444455554443223 48999999998887753 


Q ss_pred             CCceEEc
Q 015891          194 EENLHQL  200 (398)
Q Consensus       194 ~~~~~~l  200 (398)
                       ++++.+
T Consensus       692 -drv~~l  697 (718)
T PLN03073        692 -DELWVV  697 (718)
T ss_pred             -CEEEEE
Confidence             344444

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.60  E-value=8.1e-07  Score=89.66  Aligned_cols=132  Identities=14%  Similarity=0.132  Sum_probs=83.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc---------------ceEEEEe---------cCC----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV---------------PRIWVCT---------MSG----------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~---------------~~~~v~~---------v~~----------  104 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|+               ...++..         +..          
T Consensus        23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  102 (491)
T PRK10982         23 PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK  102 (491)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence            4568999999999999999999654210 00  000               0112110         000          


Q ss_pred             c--cc---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          105 Q--KT---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       105 ~--~~---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                      .  .+   .......++..+++.... ......+++++++..+.+.+..++-++|||++.   |....+.+...+.  ..
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~  182 (491)
T PRK10982        103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE  182 (491)
T ss_pred             ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence            0  00   112345667777775432 223448999999999999999999999999999   4444444433332  23


Q ss_pred             CCCEEEEEeCChHHHHHhcC
Q 015891          174 YGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~  193 (398)
                      .|..||++||+...+..+++
T Consensus       183 ~g~tvii~tH~~~~~~~~~d  202 (491)
T PRK10982        183 RGCGIVYISHKMEEIFQLCD  202 (491)
T ss_pred             CCCEEEEEecCHHHHHHhCC
Confidence            47789999999887766533

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.60  E-value=6.4e-07  Score=85.41  Aligned_cols=82  Identities=15%  Similarity=0.261  Sum_probs=57.2

Q ss_pred             HHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891          113 KRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS  182 (398)
Q Consensus       113 ~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT  182 (398)
                      .++++.+++...    ...+...++++.++..+.+.+..++-|||+|++.   |......+...+.   ...|..||++|
T Consensus       140 ~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT  219 (330)
T PRK09473        140 VRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT  219 (330)
T ss_pred             HHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence            445666666531    1234458999999999999999999999999999   3333333333322   23478999999


Q ss_pred             CChHHHHHhcCC
Q 015891          183 RNEKLTTEMVGE  194 (398)
Q Consensus       183 R~~~v~~~~~~~  194 (398)
                      |+..++..+++.
T Consensus       220 Hdl~~~~~~~Dr  231 (330)
T PRK09473        220 HDLGVVAGICDK  231 (330)
T ss_pred             CCHHHHHHhCCE
Confidence            999888765443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.60  E-value=5.9e-07  Score=80.69  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+.+... ++  ++++.+
T Consensus       140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~-~~--d~v~~l  211 (220)
T cd03245         140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LV--DRIIVM  211 (220)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hC--CEEEEE
Confidence            57899999999999999999999999998   4444444444443 122378999999998763 32  444544

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=8.9e-07  Score=83.02  Aligned_cols=79  Identities=18%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             HHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCCh
Q 015891          114 RILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNE  185 (398)
Q Consensus       114 ~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~  185 (398)
                      .++..+++..  ........+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+..||++||+.
T Consensus       132 ~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~  211 (289)
T PRK13645        132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM  211 (289)
T ss_pred             HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            4556666632  22333458899999999999999999999999999   4444444444332   22378899999998


Q ss_pred             HHHHHhc
Q 015891          186 KLTTEMV  192 (398)
Q Consensus       186 ~v~~~~~  192 (398)
                      ..+..++
T Consensus       212 ~~~~~~~  218 (289)
T PRK13645        212 DQVLRIA  218 (289)
T ss_pred             HHHHHhC
Confidence            8766543

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.59  E-value=7.2e-07  Score=85.04  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      .++++.+++..  ........++++.++..+.+.+..++-+||+|++.   |......+...+.   ...+..||++||+
T Consensus       142 ~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd  221 (331)
T PRK15079        142 KAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD  221 (331)
T ss_pred             HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            45566677742  23334558999999999999999999999999999   3333323333332   2247899999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      ...+..+++
T Consensus       222 l~~~~~~~d  230 (331)
T PRK15079        222 LAVVKHISD  230 (331)
T ss_pred             HHHHHHhCC
Confidence            998877544

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.59  E-value=7.4e-07  Score=90.21  Aligned_cols=132  Identities=15%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC---Ccc--ccc---------------eEEEEecC---Cc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV---KTQ--FVP---------------RIWVCTMS---GQ-------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~~--F~~---------------~~~v~~v~---~~-------------  105 (398)
                      .-.+++|+|++|+|||||++.++.-...   ...  |+.               ..++..-.   ..             
T Consensus        26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~  105 (500)
T TIGR02633        26 PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEI  105 (500)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence            4568999999999999999999875211   110  110               11111000   00             


Q ss_pred             ------c---cHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891          106 ------K---TAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP  171 (398)
Q Consensus       106 ------~---~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~  171 (398)
                            .   ........+++.+++...  .......+++++++..+++.+..++-+++||++.   |....+.+...+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  185 (500)
T TIGR02633       106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR  185 (500)
T ss_pred             cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence                  0   011234566777777543  2223458999999999999999999999999999   4444444444332


Q ss_pred             --CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 --RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                        ...|..||++||+.+.+..+++
T Consensus       186 ~l~~~g~tviiitHd~~~~~~~~d  209 (500)
T TIGR02633       186 DLKAHGVACVYISHKLNEVKAVCD  209 (500)
T ss_pred             HHHhCCCEEEEEeCcHHHHHHhCC
Confidence              2347889999999887766533

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.59  E-value=7.6e-07  Score=80.58  Aligned_cols=131  Identities=18%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc------------eEEEEecCCc------ccH------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP------------RIWVCTMSGQ------KTA------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~------------~~~v~~v~~~------~~~------------  108 (398)
                      .-.+++|+|++|+|||||++.+..-... ..  .|+.            ...+.++.+.      .+.            
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  104 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP  104 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence            4678999999999999999999754210 00  0000            0011111111      011            


Q ss_pred             ---HHHHHHHHHHcC-CCC-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891          109 ---ESIVKRILKRLG-VDD-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       109 ---~~~~~~il~~l~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~  177 (398)
                         ......++..++ +.. ........+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...+..
T Consensus       105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  184 (230)
T TIGR03410       105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA  184 (230)
T ss_pred             cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence               112233444443 221 12223347899999999999999999999999998   4444444444443   223789


Q ss_pred             EEEEeCChHHHHHhc
Q 015891          178 LIITSRNEKLTTEMV  192 (398)
Q Consensus       178 IIiTTR~~~v~~~~~  192 (398)
                      ||++||+.+.+..++
T Consensus       185 ii~~sH~~~~~~~~~  199 (230)
T TIGR03410       185 ILLVEQYLDFARELA  199 (230)
T ss_pred             EEEEeCCHHHHHHhC
Confidence            999999998776643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.59  E-value=5.2e-07  Score=91.12  Aligned_cols=196  Identities=15%  Similarity=0.143  Sum_probs=104.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|-+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-.....        ......-.....+..
T Consensus        16 ~divGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--------~~pcg~C~~C~~i~~   84 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQ---QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--------ATPCGVCSACLEIDS   84 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCCCHHHHHHhc
Confidence            5789999999999999864   22345678999999999999999977621111000        000000000000000


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEeCC-hHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITSRN-EKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTTR~-~~v~~  189 (398)
                      .-...............+..+..+....    .+++.++|+|+++.  ....+.|...+..- ..+.+|++|.+ ..+..
T Consensus        85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~  164 (527)
T PRK14969         85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV  164 (527)
T ss_pred             CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence            0000000000000122333332222211    24567999999993  45556666666432 35556655544 33332


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+......+++.+++. ++....+.+.+...+...+   ...+..|++.++|.+..+..
T Consensus       165 tI~SRc~~~~f~~l~~-~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~  219 (527)
T PRK14969        165 TVLSRCLQFNLKQMPP-PLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALS  219 (527)
T ss_pred             hHHHHHHHHhcCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence            3333356889999998 5566666665543332222   23567788889998875544

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.59  E-value=6.5e-07  Score=81.44  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc--------c-eEEEEecCCc------cc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV--------P-RIWVCTMSGQ------KT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~--------~-~~~v~~v~~~------~~----------------  107 (398)
                      .-.+++|.|++|+|||||++.+...... ...  |+        . .-.+.++.+.      .+                
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~  104 (237)
T TIGR00968        25 TGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK  104 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCH
Confidence            4568999999999999999999764111 000  10        0 0011111111      00                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ......+++..+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+..|
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tv  184 (237)
T TIGR00968       105 AKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT  184 (237)
T ss_pred             HHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              01223455666666431 1222347899999999999999999999999999   4444444444443   2237899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       185 li~sH~~~~~~~~~d  199 (237)
T TIGR00968       185 VFVTHDQEEAMEVAD  199 (237)
T ss_pred             EEEeCCHHHHHhhcC
Confidence            999999987666533

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.59  E-value=8.9e-07  Score=81.95  Aligned_cols=132  Identities=15%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce-----------EEEEecCCc------cc--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR-----------IWVCTMSGQ------KT--------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~-----------~~v~~v~~~------~~--------------  107 (398)
                      .-.+++|+|++|+|||||++.++...... .  .|+..           ..+.++.+.      .+              
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~  111 (265)
T PRK10253         32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP  111 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence            45689999999999999999997652110 0  01100           000001110      00              


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~  191 (265)
T PRK10253        112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR  191 (265)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence                    11233456666666532 2233448899999999999999999999999998   4444444444442   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..+..||++||+...+..+++
T Consensus       192 ~~~~tiii~tH~~~~~~~~~d  212 (265)
T PRK10253        192 EKGYTLAAVLHDLNQACRYAS  212 (265)
T ss_pred             hcCCEEEEEeCCHHHHHHhCC
Confidence            237789999999987666533

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.58  E-value=6.1e-06  Score=76.03  Aligned_cols=202  Identities=15%  Similarity=0.153  Sum_probs=124.2

Q ss_pred             CCCcccch---hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc------cceEEEEecCCccc
Q 015891           37 PANVHGFA---NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF------VPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~---~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~~v~~v~~~~~  107 (398)
                      .+.+||-.   +.++.|.++|.. ........+.|+|.+|.|||++++.+...  ....+      -.++.+. +....+
T Consensus        33 ~~rWIgY~~A~~~L~~L~~Ll~~-P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq-~P~~p~  108 (302)
T PF05621_consen   33 ADRWIGYPRAKEALDRLEELLEY-PKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQ-MPPEPD  108 (302)
T ss_pred             cCCeecCHHHHHHHHHHHHHHhC-CcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEe-cCCCCC
Confidence            46677755   344556666654 35567788999999999999999999865  11112      1355666 788899


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC-CCcEEEecCCCCH---------HHHHHHHhHcCCCCCCE
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG-KRYLIVLDDFEDM---------EVCKHLSKVLPRGYGER  177 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~---------~~~~~l~~~l~~~~gs~  177 (398)
                      ...+...|+..++......     .............+.. +.-+||+|++.+.         +.+..|+.+-+.-.=+-
T Consensus       109 ~~~~Y~~IL~~lgaP~~~~-----~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipi  183 (302)
T PF05621_consen  109 ERRFYSAILEALGAPYRPR-----DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPI  183 (302)
T ss_pred             hHHHHHHHHHHhCcccCCC-----CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCe
Confidence            9999999999999876433     2233333444445543 6679999999964         33333333222223344


Q ss_pred             EEEEeCChHHHHH----hcCCCceEEcCCCCChhHHHHHHHh---hhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          178 LIITSRNEKLTTE----MVGEENLHQLQPLSDQESCWLIYRD---SVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       178 IIiTTR~~~v~~~----~~~~~~~~~l~~L~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      |.+-|++.--+-.    +.+.-..+.+++-..+++...|+..   .++-..+.. =...+.+..|...++|+.-.+..
T Consensus       184 V~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~  260 (302)
T PF05621_consen  184 VGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSR  260 (302)
T ss_pred             EEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHH
Confidence            5555554322211    1223456777777776666666543   444332221 12345778899999998876554

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.58  E-value=8.3e-07  Score=81.51  Aligned_cols=80  Identities=13%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ..++++.+++... .......+.+++++..+.+.+..++-+++||++.   |......+...+.   ...|..||++||+
T Consensus       127 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~  206 (252)
T TIGR03005       127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE  206 (252)
T ss_pred             HHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            3456666776532 1223347899999999999999999999999999   4444444444443   1237899999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      ......+
T Consensus       207 ~~~~~~~  213 (252)
T TIGR03005       207 MGFAREF  213 (252)
T ss_pred             HHHHHHh
Confidence            8876554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.2e-06  Score=81.31  Aligned_cols=170  Identities=18%  Similarity=0.230  Sum_probs=110.1

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecCCcccHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~~~~~~~~~~~~  114 (398)
                      |+.+.+|+++++++...|...-....+.-+.|+|++|+|||+.++.+++.  +......  .+++. +....+..+++..
T Consensus        16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yIN-c~~~~t~~~i~~~   92 (366)
T COG1474          16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYIN-CLELRTPYQVLSK   92 (366)
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEe-eeeCCCHHHHHHH
Confidence            35599999999999998887434444555999999999999999999887  3333221  57777 7778889999999


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHH--HHHHhHcC--CCCCCE--EEEEeCChH
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDMEVC--KHLSKVLP--RGYGER--LIITSRNEK  186 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~~~--~~l~~~l~--~~~gs~--IIiTTR~~~  186 (398)
                      |++.++..+.     ......+....+.+.+..  +..++|||+++....-  +.|..++.  ....++  +|.++.+..
T Consensus        93 i~~~~~~~p~-----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~  167 (366)
T COG1474          93 ILNKLGKVPL-----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK  167 (366)
T ss_pred             HHHHcCCCCC-----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence            9999972221     124445556666666654  7899999999944111  34444443  222343  455666655


Q ss_pred             HHHHhcC------CCceEEcCCCCChhHHHHHHHh
Q 015891          187 LTTEMVG------EENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       187 v~~~~~~------~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      +...+..      ....+..+|=+. ++....+..
T Consensus       168 ~~~~ld~rv~s~l~~~~I~F~pY~a-~el~~Il~~  201 (366)
T COG1474         168 FLDYLDPRVKSSLGPSEIVFPPYTA-EELYDILRE  201 (366)
T ss_pred             HHHHhhhhhhhccCcceeeeCCCCH-HHHHHHHHH
Confidence            4433311      123356777776 445555554

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.58  E-value=1e-06  Score=80.67  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             HHHHHHcCCC----C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVD----D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~----~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      ..+++.+++.    . ........+.+++++..+.+.+..++-+++||++.   |......+...+. ...+..||++||
T Consensus       122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH  201 (247)
T TIGR00972       122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH  201 (247)
T ss_pred             HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence            4455666664    2 12233458899999999999999999999999999   4444444444443 122478999999


Q ss_pred             ChHHHHHhcC
Q 015891          184 NEKLTTEMVG  193 (398)
Q Consensus       184 ~~~v~~~~~~  193 (398)
                      +...+..+++
T Consensus       202 ~~~~~~~~~d  211 (247)
T TIGR00972       202 NMQQAARISD  211 (247)
T ss_pred             CHHHHHHhCC
Confidence            9987766433

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.58  E-value=1.2e-06  Score=80.99  Aligned_cols=81  Identities=19%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR  183 (398)
                      ...+++.+++..  ........+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++||
T Consensus       130 ~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH  209 (265)
T TIGR02769       130 IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH  209 (265)
T ss_pred             HHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence            345667777742  12333458899999999999999999999999998   4443333333332   223788999999


Q ss_pred             ChHHHHHhc
Q 015891          184 NEKLTTEMV  192 (398)
Q Consensus       184 ~~~v~~~~~  192 (398)
                      +...+..++
T Consensus       210 ~~~~~~~~~  218 (265)
T TIGR02769       210 DLRLVQSFC  218 (265)
T ss_pred             CHHHHHHHh
Confidence            998776543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.58  E-value=7e-07  Score=92.56  Aligned_cols=83  Identities=17%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR  183 (398)
                      ..++++.+++..  ......+.+++++++..+++.|..++-|||+|++.   |......+...+.   ...|..||++||
T Consensus       443 ~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isH  522 (623)
T PRK10261        443 VAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH  522 (623)
T ss_pred             HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            345677778742  23344568999999999999999999999999999   4433333333332   224788999999


Q ss_pred             ChHHHHHhcCC
Q 015891          184 NEKLTTEMVGE  194 (398)
Q Consensus       184 ~~~v~~~~~~~  194 (398)
                      +..++..+++.
T Consensus       523 dl~~v~~~~dr  533 (623)
T PRK10261        523 DMAVVERISHR  533 (623)
T ss_pred             CHHHHHHhCCE
Confidence            99888776443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=8.9e-07  Score=82.71  Aligned_cols=128  Identities=16%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC----cc--cc--------------ceEEEEecC----Cccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK----TQ--FV--------------PRIWVCTMS----GQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~--------------~~~~v~~v~----~~~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-....    ..  |+              .+.++..-.    ...+          
T Consensus        32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~  111 (282)
T PRK13640         32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE  111 (282)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHH
Confidence            45789999999999999999998652111    00  00              011111000    0000          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              ..+....+++.+++... .......+.++.++..+.+.+..++-++|||++.   |....+.+...+.   .
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~  191 (282)
T PRK13640        112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK  191 (282)
T ss_pred             hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence                    01223456667776542 2233458899999999999999999999999999   4444444444443   2


Q ss_pred             CCCCEEEEEeCChHHHH
Q 015891          173 GYGERLIITSRNEKLTT  189 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~  189 (398)
                      ..|..||++||+.....
T Consensus       192 ~~g~tvli~tH~~~~~~  208 (282)
T PRK13640        192 KNNLTVISITHDIDEAN  208 (282)
T ss_pred             hcCCEEEEEecCHHHHH
Confidence            23789999999988765

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.57  E-value=1e-06  Score=91.37  Aligned_cols=82  Identities=11%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             HHHHHHHcCCCC----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          112 VKRILKRLGVDD----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       112 ~~~il~~l~~~~----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      ..++++.+++..    ........+++++++..|++.|..++-+||||++.   |......+...+.   ...|..||++
T Consensus       146 ~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i  225 (623)
T PRK10261        146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI  225 (623)
T ss_pred             HHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            345677778753    12344568999999999999999999999999999   4433333333332   2337889999


Q ss_pred             eCChHHHHHhcC
Q 015891          182 SRNEKLTTEMVG  193 (398)
Q Consensus       182 TR~~~v~~~~~~  193 (398)
                      ||+...+..+++
T Consensus       226 tHdl~~~~~~ad  237 (623)
T PRK10261        226 THDMGVVAEIAD  237 (623)
T ss_pred             cCCHHHHHHhCC
Confidence            999888776543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.57  E-value=9.5e-07  Score=80.91  Aligned_cols=132  Identities=20%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--ccc-----------eEEEEecCCc--------------------c--
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FVP-----------RIWVCTMSGQ--------------------K--  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~-----------~~~v~~v~~~--------------------~--  106 (398)
                      .-.+++|+|++|+|||||++.+..-......  |+.           ...+.++.+.                    .  
T Consensus        21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~  100 (248)
T PRK03695         21 AGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRT  100 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCc
Confidence            4568999999999999999999754211100  000           0001111110                    0  


Q ss_pred             -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhC-------CCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891          107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIG-------KRYLIVLDDFE---DMEVCKHLSKVLP--R  172 (398)
Q Consensus       107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~-------k~~LlVLDdv~---~~~~~~~l~~~l~--~  172 (398)
                       .......++++.+++... .......+.+++++..+.+.+..       ++-+++||++.   |....+.+...+.  .
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~  180 (248)
T PRK03695        101 EAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC  180 (248)
T ss_pred             HHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence             012234566777777542 22234478999999999999986       56999999998   4444444444443  2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..+..||++||+.+....+++
T Consensus       181 ~~~~tvi~~sH~~~~~~~~~d  201 (248)
T PRK03695        181 QQGIAVVMSSHDLNHTLRHAD  201 (248)
T ss_pred             hCCCEEEEEecCHHHHHHhCC
Confidence            347899999999886655433

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.57  E-value=6.5e-07  Score=79.22  Aligned_cols=80  Identities=13%  Similarity=0.174  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHH----HHHHhHcCCCCCCEEEEE
Q 015891          110 SIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVC----KHLSKVLPRGYGERLIIT  181 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~----~~l~~~l~~~~gs~IIiT  181 (398)
                      .....+++.++......... ..+.+++++..+++++..+|-|+|||++.+   ....    +.+........+..+|+.
T Consensus       150 ~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~V  229 (257)
T COG1119         150 AAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV  229 (257)
T ss_pred             HHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEE
Confidence            34567788888775433333 378899999999999999999999999983   3323    233333323346677777


Q ss_pred             eCChHHHH
Q 015891          182 SRNEKLTT  189 (398)
Q Consensus       182 TR~~~v~~  189 (398)
                      ||..+-+.
T Consensus       230 tHh~eEi~  237 (257)
T COG1119         230 THHAEEIP  237 (257)
T ss_pred             Ecchhhcc
Confidence            77654433

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.57  E-value=7.8e-07  Score=89.79  Aligned_cols=87  Identities=11%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++..+++..  ........+++++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       371 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd  450 (491)
T PRK10982        371 TQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE  450 (491)
T ss_pred             HHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            345566666642  23344558999999999999999999999999999   4433333333332  2347889999999


Q ss_pred             hHHHHHhcCCCceEEc
Q 015891          185 EKLTTEMVGEENLHQL  200 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l  200 (398)
                      .+.+..++  ++++.+
T Consensus       451 ~~~~~~~~--d~v~~l  464 (491)
T PRK10982        451 MPELLGIT--DRILVM  464 (491)
T ss_pred             hHHHHhhC--CEEEEE
Confidence            88877653  344544

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.57  E-value=6.6e-07  Score=88.52  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             HHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEEE
Q 015891          111 IVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLIIT  181 (398)
Q Consensus       111 ~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIiT  181 (398)
                      .+.+++...++...  ...+.+.+++++++..+++.|..+|.+||+|++.+.       ...+.|.. +...-|...|++
T Consensus       408 rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~-lq~e~g~t~lfI  486 (539)
T COG1123         408 RVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFI  486 (539)
T ss_pred             HHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH-HHHHhCCEEEEE
Confidence            45666777777753  344556899999999999999999999999999843       22233332 223458999999


Q ss_pred             eCChHHHHHhcCCCceEEcCCCCC
Q 015891          182 SRNEKLTTEMVGEENLHQLQPLSD  205 (398)
Q Consensus       182 TR~~~v~~~~~~~~~~~~l~~L~~  205 (398)
                      |||..+...+++...++..+.+-+
T Consensus       487 SHDl~vV~~i~drv~vm~~G~iVE  510 (539)
T COG1123         487 SHDLAVVRYIADRVAVMYDGRIVE  510 (539)
T ss_pred             eCCHHHHHhhCceEEEEECCeEEE
Confidence            999999998876544444444443

>COG3899 Predicted ATPase [General function prediction only]

Probab=98.57  E-value=8.4e-07  Score=94.37  Aligned_cols=203  Identities=19%  Similarity=0.148  Sum_probs=115.1

Q ss_pred             CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc---ccceEEEEecCCcc---------
Q 015891           39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ---FVPRIWVCTMSGQK---------  106 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~v~~v~~~~---------  106 (398)
                      .++||+.+++.|...+... ......++.+.|.+|||||+|++++...  +.+.   |-...+-. ...+.         
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v-~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~   76 (849)
T COG3899           1 PLYGRETELAQLLAAFDRV-SKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQ-FERNIPLSPLVQAF   76 (849)
T ss_pred             CCCchHhHHHHHHHHHHHH-hCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhccc-ccCCCchHHHHHHH
Confidence            4799999999999999874 4455669999999999999999999876  3322   11111111 11110         


Q ss_pred             -------------cHHHHHHHHHHHcCCCCCC---------------CCCcC--CCchHHH-----HHHHHHHH-hCCCc
Q 015891          107 -------------TAESIVKRILKRLGVDDGT---------------TNSFE--GQGLAFL-----DYVLQQQL-IGKRY  150 (398)
Q Consensus       107 -------------~~~~~~~~il~~l~~~~~~---------------~~~~~--~~~~~~~-----~~~l~~~l-~~k~~  150 (398)
                                   ....-...++..+|.....               .+..+  ....+..     ...+.... ..+|.
T Consensus        77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl  156 (849)
T COG3899          77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL  156 (849)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence                         1111122333333322110               00001  0111111     11112222 34699


Q ss_pred             EEEecCCC--CHHHHHHHHhHcCCCC-------CCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCC
Q 015891          151 LIVLDDFE--DMEVCKHLSKVLPRGY-------GERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDK  220 (398)
Q Consensus       151 LlVLDdv~--~~~~~~~l~~~l~~~~-------gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~  220 (398)
                      ++|+||+.  |...++.+........       ....+.|.+.. .....-......+.|.||+. .+...+....++..
T Consensus       157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~-~d~~~lV~~~l~~~  235 (849)
T COG3899         157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSR-ADTNQLVAATLGCT  235 (849)
T ss_pred             EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCch-hhHHHHHHHHhCCc
Confidence            99999997  6655555544433211       22233333333 22222224467899999999 55778888777764


Q ss_pred             CCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          221 DAQLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       221 ~~~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                      ....    .+..+.|.++..|+|+-+..+.
T Consensus       236 ~~~~----~p~~~~i~~kt~GnPfFi~e~l  261 (849)
T COG3899         236 KLLP----APLLELIFEKTKGNPFFIEEFL  261 (849)
T ss_pred             cccc----chHHHHHHHHhcCCCccHHHHH
Confidence            3332    2377889999999999977654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=4.9e-07  Score=82.22  Aligned_cols=63  Identities=13%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+.+.+..++
T Consensus       137 ~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~  204 (237)
T PRK11614        137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA  204 (237)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhC
Confidence            47889999999999999999999999999   4444444444432  234788999999987665543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=1.5e-06  Score=79.79  Aligned_cols=64  Identities=11%  Similarity=0.076  Sum_probs=48.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......++
T Consensus       146 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~  213 (251)
T PRK14249        146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARAS  213 (251)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhC
Confidence            347899999999999999999999999998   4443333333332 124689999999988777653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.57  E-value=1.1e-06  Score=89.03  Aligned_cols=131  Identities=15%  Similarity=0.088  Sum_probs=83.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc---------------ceEEEEe---cCCcc--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV---------------PRIWVCT---MSGQK--------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~---------------~~~~v~~---v~~~~--------------  106 (398)
                      .-.+++|+|++|+|||||++.++.-... ..  .|.               .+.++..   +....              
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  108 (501)
T PRK11288         29 AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK  108 (501)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence            4568999999999999999999764210 00  000               0111110   00000              


Q ss_pred             -------cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          107 -------TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       107 -------~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                             .......++++.+++... .......+++++++..+.+.+..++-+++||++.   |....+.+...+.  ..
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  188 (501)
T PRK11288        109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA  188 (501)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                   011234556777777543 2233458999999999999999999999999999   4444444443332  23


Q ss_pred             CCCEEEEEeCChHHHHHhc
Q 015891          174 YGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~  192 (398)
                      .|..||++||+...+..++
T Consensus       189 ~g~tiiiitHd~~~~~~~~  207 (501)
T PRK11288        189 EGRVILYVSHRMEEIFALC  207 (501)
T ss_pred             CCCEEEEEeCCHHHHHHhC
Confidence            4788999999988776653

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.57  E-value=2e-06  Score=78.90  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             HHHHHHcCCCC--CCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          113 KRILKRLGVDD--GTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..++..+++..  ...... ..+.++.++..+.+.+..++-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       131 ~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~  210 (252)
T CHL00131        131 NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY  210 (252)
T ss_pred             HHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            34566666652  122222 37899999999999999999999999999   4444444444443  2247889999999


Q ss_pred             hHHHHH
Q 015891          185 EKLTTE  190 (398)
Q Consensus       185 ~~v~~~  190 (398)
                      ......
T Consensus       211 ~~~~~~  216 (252)
T CHL00131        211 QRLLDY  216 (252)
T ss_pred             HHHHHh
Confidence            887765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.57  E-value=1.3e-06  Score=80.27  Aligned_cols=65  Identities=11%  Similarity=0.131  Sum_probs=48.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..+++
T Consensus       148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d  216 (253)
T PRK14242        148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSD  216 (253)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCC
Confidence            457899999999999999999999999999   4444444444433 1236789999999887765433

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=8.4e-07  Score=81.59  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+++++++..+.+.+..++-++|||++.   |....+.+...+. ...+..||++||+...+..++
T Consensus       149 ~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~  216 (254)
T PRK14273        149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRIS  216 (254)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            348899999999999999999999999998   4444433433332 123678999999998876653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=8e-07  Score=82.54  Aligned_cols=128  Identities=13%  Similarity=0.165  Sum_probs=79.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc---------------ccc-ceEEEEec----------CCc---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT---------------QFV-PRIWVCTM----------SGQ---------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~---------------~F~-~~~~v~~v----------~~~---------  105 (398)
                      .-.+++|.|++|+|||||++.++.-... ..               .+. .+.++..-          ..+         
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~  113 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK  113 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence            4568999999999999999999764211 00               000 01111100          000         


Q ss_pred             cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          106 KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       106 ~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                      ..   ......++++.+++... .......+.+++++..+.+++..++-+++||++.   |....+.+...+.   ...+
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~  193 (271)
T PRK13632        114 VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK  193 (271)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            00   11123455666666532 2223458899999999999999999999999999   4444444444443   1224


Q ss_pred             CEEEEEeCChHHHH
Q 015891          176 ERLIITSRNEKLTT  189 (398)
Q Consensus       176 s~IIiTTR~~~v~~  189 (398)
                      ..||++||+.....
T Consensus       194 ~tiii~sH~~~~~~  207 (271)
T PRK13632        194 KTLISITHDMDEAI  207 (271)
T ss_pred             cEEEEEEechhHHh
Confidence            78999999987664

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.56  E-value=1.1e-06  Score=89.98  Aligned_cols=136  Identities=18%  Similarity=0.205  Sum_probs=87.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc-------ccH----------------HHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ-------KTA----------------ESIVKRI  115 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~-------~~~----------------~~~~~~i  115 (398)
                      .-.+++|+|++|+|||||++.++..... ..  .|.....+.++.+.       .+.                ......+
T Consensus       347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  426 (552)
T TIGR03719       347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY  426 (552)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence            4568999999999999999999865211 01  01110011111111       011                1123456


Q ss_pred             HHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          116 LKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       116 l~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      +..+++...  .......+++++++..+.+.+..++-+++||++.   |....+.+...+..-.+ .||++||+...+..
T Consensus       427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~viivsHd~~~~~~  505 (552)
T TIGR03719       427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG-CAVVISHDRWFLDR  505 (552)
T ss_pred             HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            777777532  3334558999999999999999999999999999   45555555555542224 69999999988776


Q ss_pred             hcCCCceEEc
Q 015891          191 MVGEENLHQL  200 (398)
Q Consensus       191 ~~~~~~~~~l  200 (398)
                      ++  ++++.+
T Consensus       506 ~~--d~i~~l  513 (552)
T TIGR03719       506 IA--THILAF  513 (552)
T ss_pred             hC--CEEEEE
Confidence            53  345555

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.56  E-value=1.3e-06  Score=85.11  Aligned_cols=179  Identities=16%  Similarity=0.270  Sum_probs=100.9

Q ss_pred             CCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           36 PPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..+++.|+++.+++|.+.+...         -+-..++.|.|+|++|+|||++|+++++.  ....     |+. +..  
T Consensus       129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~-v~~--  198 (389)
T PRK03992        129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIR-VVG--  198 (389)
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEE-eeh--
Confidence            3467889999999999876431         11234677999999999999999999987  3322     222 211  


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC--
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP--  171 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--  171 (398)
                        ..+....   .+           .........+...-...+.+|+|||++..             +....+...+.  
T Consensus       199 --~~l~~~~---~g-----------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l  262 (389)
T PRK03992        199 --SELVQKF---IG-----------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM  262 (389)
T ss_pred             --HHHhHhh---cc-----------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc
Confidence              1111100   00           11112222333333456789999999843             12222333321  


Q ss_pred             ----CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          172 ----RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       172 ----~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                          ...+..||.||...+.... +.   ..+..+++++.+. ++...+|+..+........-    ....+++.+.|..
T Consensus       263 d~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~-~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~s  337 (389)
T PRK03992        263 DGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDE-EGRLEILKIHTRKMNLADDV----DLEELAELTEGAS  337 (389)
T ss_pred             cccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCH-HHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCCC
Confidence                1235667878876543222 11   2256789988877 67778887655433221111    3456677777765


Q ss_pred             hh
Q 015891          244 ED  245 (398)
Q Consensus       244 la  245 (398)
                      -+
T Consensus       338 ga  339 (389)
T PRK03992        338 GA  339 (389)
T ss_pred             HH
Confidence            43

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.56  E-value=9.9e-07  Score=79.29  Aligned_cols=69  Identities=14%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......+   ++++.+
T Consensus       138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~---d~i~~l  210 (221)
T cd03244         138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS---DRILVL  210 (221)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC---CEEEEE
Confidence            347889999999999999999999999999   4444444444443 22357899999998776542   444444

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=1.1e-06  Score=81.92  Aligned_cols=129  Identities=15%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccceE-----------EEEecCCcc---------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPRI-----------WVCTMSGQK---------------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~~-----------~v~~v~~~~---------------------  106 (398)
                      .-.+++|.|++|+|||||++.++...... .  .|+..-           -+.++.+..                     
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~  111 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG  111 (279)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence            45689999999999999999997552110 0  011000           000011100                     


Q ss_pred             -c---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          107 -T---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       107 -~---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                       .   .......++..+++.... ......+.+++++..+.+.+..++-+|+||++.   |....+.+...+.   ...|
T Consensus       112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~  191 (279)
T PRK13635        112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG  191 (279)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence             0   012245556666665422 223348899999999999999999999999999   4554445544443   2237


Q ss_pred             CEEEEEeCChHHHHH
Q 015891          176 ERLIITSRNEKLTTE  190 (398)
Q Consensus       176 s~IIiTTR~~~v~~~  190 (398)
                      .+||++||+.+....
T Consensus       192 ~tilivsH~~~~~~~  206 (279)
T PRK13635        192 ITVLSITHDLDEAAQ  206 (279)
T ss_pred             CEEEEEecCHHHHHc
Confidence            899999999887653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=9.4e-07  Score=81.97  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=80.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc--------------ceEEEEecCC----ccc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV--------------PRIWVCTMSG----QKT-------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~--------------~~~~v~~v~~----~~~-------------  107 (398)
                      .-.+++|.|++|+|||||++.+..-... ..  .++              ...++..-..    ...             
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~  113 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA  113 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence            4668999999999999999999764211 00  000              0112110000    000             


Q ss_pred             -----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          108 -----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       108 -----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                           .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~  193 (269)
T PRK13648        114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN  193 (269)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                 01223456666776532 2233458899999999999999999999999999   4444444444443   2237


Q ss_pred             CEEEEEeCChHHHHH
Q 015891          176 ERLIITSRNEKLTTE  190 (398)
Q Consensus       176 s~IIiTTR~~~v~~~  190 (398)
                      .+||++||+...+..
T Consensus       194 ~tiiivtH~~~~~~~  208 (269)
T PRK13648        194 ITIISITHDLSEAME  208 (269)
T ss_pred             CEEEEEecCchHHhc
Confidence            889999999876653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=9.4e-07  Score=82.58  Aligned_cols=129  Identities=18%  Similarity=0.148  Sum_probs=83.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c-----------------cccc-eEEEEecCCcc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T-----------------QFVP-RIWVCTMSGQK----------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~-----------------~F~~-~~~v~~v~~~~----------------  106 (398)
                      .-.+++|+|++|+|||||++.++.-.... .                 .+.. +.++   .+..                
T Consensus        31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v---~q~~~~~~~~~tv~e~l~~~  107 (283)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMV---FQDPDNQLFSASVYQDVSFG  107 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEE---ecCcchhhccccHHHHHHhH
Confidence            45689999999999999999997542100 0                 0000 1111   1110                


Q ss_pred             ------c---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          107 ------T---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       107 ------~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                            .   .......+++.+++... .......+.+++++..+.+.|..++-++|||++.   |......+...+.  
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l  187 (283)
T PRK13636        108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM  187 (283)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence                  0   01234555666776542 2233448999999999999999999999999999   4544444444432  


Q ss_pred             -CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 -RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                       ...|..||++||+.+.+..+++
T Consensus       188 ~~~~g~tillvsH~~~~~~~~~d  210 (283)
T PRK13636        188 QKELGLTIIIATHDIDIVPLYCD  210 (283)
T ss_pred             HHhCCCEEEEEecCHHHHHHhCC
Confidence             2237899999999887765433

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.56  E-value=1e-06  Score=91.52  Aligned_cols=130  Identities=19%  Similarity=0.223  Sum_probs=84.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc-------ccH----------------HHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ-------KTA----------------ESIVKRI  115 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~-------~~~----------------~~~~~~i  115 (398)
                      .-.+++|+|++|+|||||++.++..... ..  .|...+.+.++.+.       .+.                ......+
T Consensus       344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  423 (635)
T PRK11147        344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY  423 (635)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence            4458999999999999999999875211 11  11111111112211       011                1123445


Q ss_pred             HHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          116 LKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       116 l~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      +..+++...  .......+++++++..+.+.+..++-+|+||++.   |....+.+...+... ++.||++||+...+..
T Consensus       424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vSHd~~~~~~  502 (635)
T PRK11147        424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QGTVLLVSHDRQFVDN  502 (635)
T ss_pred             HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHH
Confidence            556665421  2233458999999999999999999999999999   455555666655432 4589999999988876


Q ss_pred             hc
Q 015891          191 MV  192 (398)
Q Consensus       191 ~~  192 (398)
                      ++
T Consensus       503 ~~  504 (635)
T PRK11147        503 TV  504 (635)
T ss_pred             hc
Confidence            53

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.55  E-value=1.1e-06  Score=78.53  Aligned_cols=132  Identities=17%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC-CCcc---ccceE-EEE---ecCCcccHHHH---------------HHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQ---FVPRI-WVC---TMSGQKTAESI---------------VKRILKR  118 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~---F~~~~-~v~---~v~~~~~~~~~---------------~~~il~~  118 (398)
                      .-.+++|+|++|+|||||++.++.-.. ....   +.... .+.   .+....+..+.               ...+...
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~   91 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL   91 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            457899999999999999999986521 1111   11110 010   01111111111               1111222


Q ss_pred             cCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHc-CCCCCCEEEEEeCChHHHHHhcC
Q 015891          119 LGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVL-PRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       119 l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l-~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      +++... .......+.+++++..+.+.+..++-++++|++.   +......+...+ ....+..+|++||+......+++
T Consensus        92 ~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d  171 (213)
T PRK15177         92 TQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCH  171 (213)
T ss_pred             hChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcC
Confidence            232221 1122347888999999999999999999999985   333322233222 11123358999999987765433

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.55  E-value=2.9e-06  Score=74.25  Aligned_cols=89  Identities=18%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             CCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCC
Q 015891          147 GKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDA  222 (398)
Q Consensus       147 ~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~  222 (398)
                      +.+-++|+||++.  .+..+.|...+. ..+.+.+|++|++. .+...+......+++.|++. ++....+.+. +    
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~-~~~~~~l~~~-g----  168 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSE-EALLQWLIRQ-G----  168 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCH-HHHHHHHHHc-C----
Confidence            4567999999984  345556666664 23456677766653 34444444567899999998 5555555554 2    


Q ss_pred             cchHHHHHHHHHHHHhcCCCchh
Q 015891          223 QLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       223 ~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                       ..   .+.+..|++.++|.|..
T Consensus       169 -i~---~~~~~~i~~~~~g~~r~  187 (188)
T TIGR00678       169 -IS---EEAAELLLALAGGSPGA  187 (188)
T ss_pred             -CC---HHHHHHHHHHcCCCccc
Confidence             11   23678899999998864

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.55  E-value=1.3e-06  Score=76.87  Aligned_cols=123  Identities=13%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE--------------ecCCcccH---HHHHHHHHHHcCCCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC--------------TMSGQKTA---ESIVKRILKRLGVDD  123 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~--------------~v~~~~~~---~~~~~~il~~l~~~~  123 (398)
                      ..-.+++|.|++|+|||||++.+..-.. .....+.+++.              ++.+....   ..+...+....... 
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-  110 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-  110 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-
Confidence            3457899999999999999999987520 01222222221              11221110   01111111100000 


Q ss_pred             CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH-HHHHh
Q 015891          124 GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK-LTTEM  191 (398)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~-v~~~~  191 (398)
                            ..+.++.++..+.+++..++-++++|++.   |....+.+...+.  ...+..||++||+.. ....+
T Consensus       111 ------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~  178 (194)
T cd03213         111 ------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL  178 (194)
T ss_pred             ------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence                  46889999999999999999999999998   4444444444443  234789999999975 44443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.54  E-value=1.4e-06  Score=80.83  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=57.3

Q ss_pred             HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR  183 (398)
                      ...++..+++..  ........+.+++++..+.+.+..++-+|+||++.   |....+.+...+.   ...+..||++||
T Consensus       131 ~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH  210 (268)
T PRK10419        131 ASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH  210 (268)
T ss_pred             HHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEEC
Confidence            455666777642  22333457899999999999999999999999999   4443334433332   223789999999


Q ss_pred             ChHHHHHhc
Q 015891          184 NEKLTTEMV  192 (398)
Q Consensus       184 ~~~v~~~~~  192 (398)
                      +......++
T Consensus       211 ~~~~i~~~~  219 (268)
T PRK10419        211 DLRLVERFC  219 (268)
T ss_pred             CHHHHHHhC
Confidence            988776643

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=1e-06  Score=82.26  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ...+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++||+
T Consensus       125 ~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~  204 (280)
T PRK13633        125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY  204 (280)
T ss_pred             HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            4556666776542 2233458999999999999999999999999999   4444444444443   2247899999999


Q ss_pred             hHHHHH
Q 015891          185 EKLTTE  190 (398)
Q Consensus       185 ~~v~~~  190 (398)
                      .+.+..
T Consensus       205 ~~~~~~  210 (280)
T PRK13633        205 MEEAVE  210 (280)
T ss_pred             hHHHhc
Confidence            887654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.54  E-value=6.6e-07  Score=78.64  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE-------------EecCCcccH---HHHHHHHHHHcCCCCCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV-------------CTMSGQKTA---ESIVKRILKRLGVDDGT  125 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v-------------~~v~~~~~~---~~~~~~il~~l~~~~~~  125 (398)
                      .-.+++|+|++|+|||||++.++..... ......+++             .++.+....   ......+.......   
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---  107 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---  107 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh---
Confidence            4578999999999999999999864110 001111111             112221110   11122221100000   


Q ss_pred             CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH-HHHHhcCCCceEE
Q 015891          126 TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK-LTTEMVGEENLHQ  199 (398)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~-v~~~~~~~~~~~~  199 (398)
                          ..+.++.++..+.+.+..++-++++|++.   |....+.+...+.  ...+..||++||+.+ ....++  ++++.
T Consensus       108 ----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~--d~i~~  181 (192)
T cd03232         108 ----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF--DRLLL  181 (192)
T ss_pred             ----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhC--CEEEE
Confidence                46889999999999999999999999998   4444444444433  224789999999976 333332  44555


Q ss_pred             c
Q 015891          200 L  200 (398)
Q Consensus       200 l  200 (398)
                      +
T Consensus       182 l  182 (192)
T cd03232         182 L  182 (192)
T ss_pred             E
Confidence            4

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.54  E-value=1.1e-06  Score=89.44  Aligned_cols=132  Identities=20%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--cc-----------------ceEEEEec-----CCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FV-----------------PRIWVCTM-----SGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~-----------------~~~~v~~v-----~~~~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-......  |+                 .+.++..-     ....+          
T Consensus       311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~  390 (529)
T PRK15134        311 PGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLR  390 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHH
Confidence            4568999999999999999999764210000  10                 01121100     00000          


Q ss_pred             ----------HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          108 ----------AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       108 ----------~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                                ......+++..+++..  ........+++++++..+++.+..++-++|||++.   |....+.+...+. 
T Consensus       391 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        391 VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence                      0122345677777752  23344568999999999999999999999999999   4444444444443 


Q ss_pred             --CCCCCEEEEEeCChHHHHHhcC
Q 015891          172 --RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                        ...|..||++||+...+..+++
T Consensus       471 ~~~~~~~tvi~vsHd~~~~~~~~d  494 (529)
T PRK15134        471 LQQKHQLAYLFISHDLHVVRALCH  494 (529)
T ss_pred             HHHhhCCEEEEEeCCHHHHHHhcC
Confidence              2237789999999987776543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.54  E-value=1.1e-06  Score=89.44  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ..+++..+++... .......+++++++..+++.+..++-+|+||++.   |....+.+...+.   ...|..||++||+
T Consensus       149 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd  228 (520)
T TIGR03269       149 AVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW  228 (520)
T ss_pred             HHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            3456667777542 2233458999999999999999999999999999   4444444433332   2247889999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      .+.+..++
T Consensus       229 ~~~~~~~~  236 (520)
T TIGR03269       229 PEVIEDLS  236 (520)
T ss_pred             HHHHHHhc
Confidence            98877653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.8e-06  Score=80.03  Aligned_cols=79  Identities=9%  Similarity=0.093  Sum_probs=54.6

Q ss_pred             HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      ..+++.+++..     ........+.++.++..+.+.+..++-+|+||++.   |....+.+...+. ...+..||++||
T Consensus       141 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH  220 (267)
T PRK14235        141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH  220 (267)
T ss_pred             HHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            44555666632     11223457899999999999999999999999999   4444444443332 123578999999


Q ss_pred             ChHHHHHh
Q 015891          184 NEKLTTEM  191 (398)
Q Consensus       184 ~~~v~~~~  191 (398)
                      +...+..+
T Consensus       221 ~~~~~~~~  228 (267)
T PRK14235        221 SMQQAARV  228 (267)
T ss_pred             CHHHHHhh
Confidence            98877654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.54  E-value=1.4e-06  Score=77.08  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=74.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE------------------EecCCcccH--HHHHHHHHHHcCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV------------------CTMSGQKTA--ESIVKRILKRLGV  121 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v------------------~~v~~~~~~--~~~~~~il~~l~~  121 (398)
                      .-.+++|+|++|+|||||++.+...... ..-.+.+.+                  .++.+....  .....+++..   
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~---  100 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGHPKY-EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY---  100 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh---
Confidence            4579999999999999999999875210 001111111                  111221110  0111122211   


Q ss_pred             CCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891          122 DDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~  190 (398)
                           .....+.++.++..+.+.+..++-++++|++.   |....+.+...+.  ...+..||++||+......
T Consensus       101 -----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~  169 (200)
T cd03217         101 -----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY  169 (200)
T ss_pred             -----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence                 11246889999999999999999999999999   4433434433332  1247899999999987764

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.54  E-value=2.4e-06  Score=75.84  Aligned_cols=126  Identities=15%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-eEEEEecCCc-----------------ccHHHHHHHHHHHc
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-RIWVCTMSGQ-----------------KTAESIVKRILKRL  119 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-~~~v~~v~~~-----------------~~~~~~~~~il~~l  119 (398)
                      ..-.+++|.|++|+|||||++.+..-.... .  .|+. +.++   .+.                 ... ......++.+
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~---~q~~~l~~~t~~enl~~~~~~~~-~~~~~~~~~~  104 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYV---SQEPWIQNGTIRENILFGKPFDE-ERYEKVIKAC  104 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEE---ecCchhccCcHHHHhccCCCcCH-HHHHHHHHHc
Confidence            356789999999999999999998752111 1  1221 1111   111                 111 1122222222


Q ss_pred             CCC-----------C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh-HcC--CCCCCEEEEE
Q 015891          120 GVD-----------D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK-VLP--RGYGERLIIT  181 (398)
Q Consensus       120 ~~~-----------~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~-~l~--~~~gs~IIiT  181 (398)
                      ++.           . ........+.+++++..+.+.+..++-++++|++.   |....+.+.. .+.  ...+..||++
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~  184 (204)
T cd03250         105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV  184 (204)
T ss_pred             CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            211           0 01122347889999999999999999999999998   4444443433 222  2347899999


Q ss_pred             eCChHHHHH
Q 015891          182 SRNEKLTTE  190 (398)
Q Consensus       182 TR~~~v~~~  190 (398)
                      ||+......
T Consensus       185 sh~~~~~~~  193 (204)
T cd03250         185 THQLQLLPH  193 (204)
T ss_pred             eCCHHHHhh
Confidence            999877664

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.54  E-value=7.6e-07  Score=78.52  Aligned_cols=131  Identities=18%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE------------ecCC------------------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC------------TMSG------------------------  104 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~------------~v~~------------------------  104 (398)
                      ..-++.++.|++|+||||..+.+..=  +...-..+-|-.            ++..                        
T Consensus        26 ~~G~i~GllG~NGAGKTTtfRmILgl--le~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~  103 (300)
T COG4152          26 PPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP  103 (300)
T ss_pred             cCCeEEEeecCCCCCccchHHHHhcc--CCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence            45689999999999999999999764  211111122211            1110                        


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCCCcC-CCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891          105 QKTAESIVKRILKRLGVDDGTTNSFE-GQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL  178 (398)
Q Consensus       105 ~~~~~~~~~~il~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I  178 (398)
                      ......-+..+++.+.+.......+. .+.+.++...+...+-++|-|+|||++.   |+-..+.|.....  ...|.+|
T Consensus       104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatI  183 (300)
T COG4152         104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI  183 (300)
T ss_pred             HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEE
Confidence            11223345566777776654443333 6777788888888889999999999998   4444455554443  5679999


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |+.||...-+..+|+
T Consensus       184 ifSsH~Me~vEeLCD  198 (300)
T COG4152         184 IFSSHRMEHVEELCD  198 (300)
T ss_pred             EEecchHHHHHHHhh
Confidence            999998654444433

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.54  E-value=1.5e-06  Score=76.70  Aligned_cols=124  Identities=15%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCC--C----CCc-----c-c--------cceEEEEecCCccc------HHHHHHHHHHH
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKP--D----VKT-----Q-F--------VPRIWVCTMSGQKT------AESIVKRILKR  118 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~--~----~~~-----~-F--------~~~~~v~~v~~~~~------~~~~~~~il~~  118 (398)
                      +++|+|++|+|||||+++++.-.  .    ...     - |        .....+..+.++++      ......++++.
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~  103 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA  103 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence            88999999999999999985210  0    000     0 0        01122222222221      12233444444


Q ss_pred             cCCCCCCCCCcCCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          119 LGVDDGTTNSFEGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       119 l~~~~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                        ...........+.+++++..+...+.    ..+-+++||++.   |....+.+...+. ...+..||++||+.+....
T Consensus       104 --~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~  181 (197)
T cd03278         104 --PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA  181 (197)
T ss_pred             --CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence              11122223347888888888988875    456899999998   4444444444443 2235789999999987653

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.53  E-value=2e-06  Score=83.20  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ..++++.+++.... ......+.+++++..+.+.|..++-++++|++.   |......+...+.   ...+.+||++||+
T Consensus       145 a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd  224 (382)
T TIGR03415       145 VDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD  224 (382)
T ss_pred             HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            45667777876432 233448999999999999999999999999998   4433333333332   2237899999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      .+.+..+++
T Consensus       225 l~e~~~l~D  233 (382)
T TIGR03415       225 LDEALKIGN  233 (382)
T ss_pred             HHHHHHhCC
Confidence            988766533

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.53  E-value=1.9e-06  Score=78.22  Aligned_cols=130  Identities=17%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc-c--------------ccceEEEEe---cCCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-Q--------------FVPRIWVCT---MSGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~--------------F~~~~~v~~---v~~~~~----------------  107 (398)
                      .-.+++|.|++|+|||||++.+........ .              ...+.++..   +-...+                
T Consensus        24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~  103 (235)
T cd03299          24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK  103 (235)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence            456899999999999999999976421110 0              001111110   000000                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ......++++.+++... .......+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+.+|
T Consensus       104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti  183 (235)
T cd03299         104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV  183 (235)
T ss_pred             HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              11123455666776532 2223357899999999999999999999999998   4444444433332   2237899


Q ss_pred             EEEeCChHHHHHh
Q 015891          179 IITSRNEKLTTEM  191 (398)
Q Consensus       179 IiTTR~~~v~~~~  191 (398)
                      |++||+...+...
T Consensus       184 li~tH~~~~~~~~  196 (235)
T cd03299         184 LHVTHDFEEAWAL  196 (235)
T ss_pred             EEEecCHHHHHHh
Confidence            9999999876654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=3e-06  Score=82.34  Aligned_cols=182  Identities=15%  Similarity=0.214  Sum_probs=101.0

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC------CccccceEEEEecCCcccHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV------KTQFVPRIWVCTMSGQKTAES  110 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~~v~~v~~~~~~~~  110 (398)
                      -++++|.+..++.+...+..   ..-...+.++|++|+||||+|+.+.+...-      ...|...+.-.+....... .
T Consensus        16 ~~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~   91 (367)
T PRK14970         16 FDDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-D   91 (367)
T ss_pred             HHhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-H
Confidence            36789999999999999964   234568899999999999999999776211      0112111110000010101 1


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEe-CChH
Q 015891          111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITS-RNEK  186 (398)
Q Consensus       111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTT-R~~~  186 (398)
                      .+..++..+...                     -+.+++-++++||++.  ....+.+...+.. ...+.+|++| +...
T Consensus        92 ~i~~l~~~~~~~---------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k  150 (367)
T PRK14970         92 DIRNLIDQVRIP---------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK  150 (367)
T ss_pred             HHHHHHHHHhhc---------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence            122222221100                     0123456899999983  3344555444532 2244555555 3333


Q ss_pred             HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      +...+......+++.+++. ++....+...+...+...++   +.+..|++.++|.+..+.
T Consensus       151 l~~~l~sr~~~v~~~~~~~-~~l~~~l~~~~~~~g~~i~~---~al~~l~~~~~gdlr~~~  207 (367)
T PRK14970        151 IIPTILSRCQIFDFKRITI-KDIKEHLAGIAVKEGIKFED---DALHIIAQKADGALRDAL  207 (367)
T ss_pred             CCHHHHhcceeEecCCccH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHHH
Confidence            3333334456899999998 55666666544333332222   366777888887666543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.5e-06  Score=81.41  Aligned_cols=64  Identities=11%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.+..++-+||||++.   |....+.+...+. ...+..||++||+...+..++
T Consensus       181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~  248 (286)
T PRK14275        181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVS  248 (286)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence            348899999999999999999999999998   4444444444443 123578999999988876643

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.52  E-value=2.1e-06  Score=83.23  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=49.1

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..+.+++++..+.+++-+.|+|+|||++.   |.+-...+...+.  ...|+.+|++||...++..+
T Consensus       472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~  538 (580)
T COG4618         472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV  538 (580)
T ss_pred             CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence            37899999999999999999999999998   3333344444443  45789999999999887764

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=2.1e-06  Score=87.03  Aligned_cols=192  Identities=15%  Similarity=0.175  Sum_probs=104.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|-+..++.|...+..   ..-...+.++|+.|+||||+|+.+++...-......        ..+..-...+.+..
T Consensus        16 ~dIiGQe~v~~~L~~ai~~---~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~--------~pCg~C~sC~~i~~   84 (624)
T PRK14959         16 AEVAGQETVKAILSRAAQE---NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG--------EPCNTCEQCRKVTQ   84 (624)
T ss_pred             HHhcCCHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC--------CCCcccHHHHHHhc
Confidence            5789999888889988864   123567889999999999999999887221110000        00000001111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRN-EKLT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~  188 (398)
                      .................+..+. +...+     ..+..++|+|+++.  ....+.|...+.. .....+|++|.+ ..+.
T Consensus        85 g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll  163 (624)
T PRK14959         85 GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP  163 (624)
T ss_pred             CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence            1000000000000112222222 22222     34567999999984  4555666666642 234556665555 4455


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      ..+......+++.+++. ++....+.+.+...+...++   +.++.|++.++|-...
T Consensus       164 ~TI~SRcq~i~F~pLs~-~eL~~~L~~il~~egi~id~---eal~lIA~~s~GdlR~  216 (624)
T PRK14959        164 VTIVSRCQHFTFTRLSE-AGLEAHLTKVLGREGVDYDP---AAVRLIARRAAGSVRD  216 (624)
T ss_pred             HHHHhhhhccccCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHH
Confidence            44444556889999998 55666666644333322222   3566777778876643

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.3e-06  Score=80.53  Aligned_cols=64  Identities=13%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..++
T Consensus       153 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~  220 (258)
T PRK14268        153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARIS  220 (258)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhC
Confidence            348899999999999999999999999998   4444444444332 123688999999998776543

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.51  E-value=9.3e-07  Score=79.23  Aligned_cols=158  Identities=12%  Similarity=0.064  Sum_probs=95.4

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcCC-------CCCc--ccc----------------ceEEEEecC--Ccc------
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHKP-------DVKT--QFV----------------PRIWVCTMS--GQK------  106 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~-------~~~~--~F~----------------~~~~v~~v~--~~~------  106 (398)
                      -+.-.+++++|++|.||||+.+.+-.-.       ++..  .|+                ...|++ ..  ...      
T Consensus        47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd-lp~~ds~~v~~~I  125 (325)
T COG4586          47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD-LPALDSLEVLKLI  125 (325)
T ss_pred             cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee-chhhhhHHHHHHH
Confidence            3567899999999999999999994321       0111  111                123554 22  111      


Q ss_pred             ------cHHHHHHHHHHHcCCCCCCCC-CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891          107 ------TAESIVKRILKRLGVDDGTTN-SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG  173 (398)
Q Consensus       107 ------~~~~~~~~il~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~  173 (398)
                            ...+-+..+.+-|+++..-.. --..+.+++.+..+...|-+++-++.||+++   |......++.++.   ..
T Consensus       126 y~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~  205 (325)
T COG4586         126 YEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE  205 (325)
T ss_pred             HhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHh
Confidence                  122333444555555532111 1226889999999999999999999999998   4433334444443   45


Q ss_pred             CCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhC
Q 015891          174 YGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVR  218 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~  218 (398)
                      .+++|+.|||+-+=...++.....+.-+.+-.+.....|-.+..+
T Consensus       206 ~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~  250 (325)
T COG4586         206 RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP  250 (325)
T ss_pred             hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence            699999999996544444455455555566553444444444333

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.51  E-value=1e-06  Score=81.78  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------ecCCccc----------------H
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------TMSGQKT----------------A  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~v~~~~~----------------~  108 (398)
                      .-.+++|+|++|+|||||++.++.-...    .+.+++.                 ++.+...                .
T Consensus        29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~~----~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~  104 (275)
T cd03289          29 PGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS  104 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCC
Confidence            4568999999999999999999765211    1222221                 1111110                1


Q ss_pred             HHHHHHHHHHcCCCCCCC------------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-C
Q 015891          109 ESIVKRILKRLGVDDGTT------------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-R  172 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~------------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~  172 (398)
                      ...+...++.+++.....            .....+.++.++..+.+.+..++-++++|++.   |......+...+. .
T Consensus       105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~  184 (275)
T cd03289         105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA  184 (275)
T ss_pred             HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            112334445555432100            01127889999999999999999999999998   4444444444443 2


Q ss_pred             CCCCEEEEEeCChHHHHH
Q 015891          173 GYGERLIITSRNEKLTTE  190 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~  190 (398)
                      ..+++||++||+.+....
T Consensus       185 ~~~~tii~isH~~~~i~~  202 (275)
T cd03289         185 FADCTVILSEHRIEAMLE  202 (275)
T ss_pred             cCCCEEEEEECCHHHHHh
Confidence            347899999999876654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG3903 Predicted ATPase [General function prediction only]

Probab=98.51  E-value=1.9e-07  Score=88.41  Aligned_cols=223  Identities=18%  Similarity=0.191  Sum_probs=142.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ..+.+.++|+||+||||++-++..   +...|....|+.+..+-.+.....-.+...+++..        ..++.....+
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~--------~~g~~~~~~~   81 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV--------QPGDSAVDTL   81 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc--------ccchHHHHHH
Confidence            478899999999999999999988   45667776665547766777777777777787764        2334445567


Q ss_pred             HHHHhCCCcEEEecCCCCH-HHHHHHH-hHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHh-hh-
Q 015891          142 QQQLIGKRYLIVLDDFEDM-EVCKHLS-KVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRD-SV-  217 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~~~-~~~~~l~-~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~-~~-  217 (398)
                      .....+++.++++||..+. +....+. ..+...+.-+|+.|+|+.-..    .....+.+.+|+..+.+-.+|.. +. 
T Consensus        82 ~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~----~ge~~~~~~~L~~~d~a~~lf~~ra~~  157 (414)
T COG3903          82 VRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV----AGEVHRRVPSLSLFDEAIELFVCRAVL  157 (414)
T ss_pred             HHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc----cccccccCCccccCCchhHHHHHHHHH
Confidence            7888899999999999865 2222222 233355677889999976432    34667889999887656555543 22 


Q ss_pred             CCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChH-H-HHHHhhhhcCCchhHHhHHHHHhhhccCCCCCCcchhhhh
Q 015891          218 RDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQ-L-VEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEK  295 (398)
Q Consensus       218 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lp-l-~~~lg~~l~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~  295 (398)
                      -...............+|.++..|.|++|...++... + .+.+.+.+++.   +...... ...-.........    .
T Consensus       158 ~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~dr---f~ll~~~-~r~a~~~~qtl~a----s  229 (414)
T COG3903         158 VALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDR---FRLLTGG-ARLAVLRQQTLRA----S  229 (414)
T ss_pred             hccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhH---HHHHhcc-cccchhHHHhccc----h
Confidence            1111122222234788999999999999987766543 3 56666666432   1111111 1111122222233    6


Q ss_pred             hHHHHHHHHH-hh
Q 015891          296 LQGQITKMIE-EK  307 (398)
Q Consensus       296 l~~sy~~l~~-e~  307 (398)
                      +..||--|.. |.
T Consensus       230 l~ws~~lLtgwe~  242 (414)
T COG3903         230 LDWSYALLTGWER  242 (414)
T ss_pred             hhhhhHhhhhHHH
Confidence            7788887776 54

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.51  E-value=2.7e-06  Score=76.80  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ....+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......   .++++.+
T Consensus       148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~i~~l  221 (226)
T cd03248         148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER---ADQILVL  221 (226)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh---CCEEEEe
Confidence            3447899999999999999999999999999   4444444444443 1225789999999887743   3455555

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.50  E-value=2.4e-06  Score=77.62  Aligned_cols=62  Identities=15%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...|..||++||+.+.+..
T Consensus       137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~  202 (237)
T cd03252         137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN  202 (237)
T ss_pred             CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence            458899999999999999999999999999   4444444443332 1237889999999987753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.50  E-value=2.4e-07  Score=81.88  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH---cCCCCCCEEEEE
Q 015891          109 ESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV---LPRGYGERLIIT  181 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~---l~~~~gs~IIiT  181 (398)
                      .+....+++.+++........ +.+.+++.+-.++++|..++-||+||++-   +....+.+...   ++...|..|+++
T Consensus       127 ~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI  206 (250)
T COG0411         127 RERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI  206 (250)
T ss_pred             HHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            344567788888877544433 37889999999999999999999999998   33333333333   334467899999


Q ss_pred             eCChHHHHHhcCCCceEEc
Q 015891          182 SRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       182 TR~~~v~~~~~~~~~~~~l  200 (398)
                      -|+.++...++  ++++.+
T Consensus       207 EHdM~~Vm~l~--dri~Vl  223 (250)
T COG0411         207 EHDMKLVMGLA--DRIVVL  223 (250)
T ss_pred             EeccHHHhhhc--cEEEec
Confidence            99999887764  344444

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.9e-06  Score=79.07  Aligned_cols=64  Identities=13%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+++..++-+++||++.   |....+.+...+. ...+..||++||+......++
T Consensus       146 ~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~  213 (251)
T PRK14251        146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRIS  213 (251)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhc
Confidence            347889999999999999999999999998   4444444444443 123578999999998766543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.9e-06  Score=79.49  Aligned_cols=86  Identities=7%  Similarity=0.039  Sum_probs=56.8

Q ss_pred             HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      ..+++.+++..     ........+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||
T Consensus       126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH  205 (258)
T PRK14241        126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH  205 (258)
T ss_pred             HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            34555566521     12223448899999999999999999999999998   4443334433332 123578999999


Q ss_pred             ChHHHHHhcCCCceEEc
Q 015891          184 NEKLTTEMVGEENLHQL  200 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l  200 (398)
                      +...+..++  ++++.+
T Consensus       206 ~~~~~~~~~--d~i~~l  220 (258)
T PRK14241        206 NMQQAARVS--DQTAFF  220 (258)
T ss_pred             CHHHHHHhC--CEEEEE
Confidence            988766543  344444

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.7e-06  Score=79.47  Aligned_cols=64  Identities=11%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......++
T Consensus       148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~  215 (253)
T PRK14267        148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS  215 (253)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhC
Confidence            347889999999999999999999999998   4444444443332 123578999999988766543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.50  E-value=1.7e-06  Score=78.76  Aligned_cols=187  Identities=15%  Similarity=0.190  Sum_probs=107.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+..+..|...+..    ........+||+|.|||+.|++++....-.+.|.+++.=.+++...... +.+.=  
T Consensus        36 de~~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K--  108 (346)
T KOG0989|consen   36 DELAGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK--  108 (346)
T ss_pred             HhhcchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh--
Confidence            6789999999999998864    5678899999999999999999987732234455543221133221111 00000  


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCC-cEEEecCCCCH--HHHHHHHhHcC-CCCCCEEEEEeCC-hHHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKR-YLIVLDDFEDM--EVCKHLSKVLP-RGYGERLIITSRN-EKLTTE  190 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVLDdv~~~--~~~~~l~~~l~-~~~gs~IIiTTR~-~~v~~~  190 (398)
                                   ..+.........+..  ..++ -++|||+++..  +.|..|+..+. ....++.|+++.. ..+...
T Consensus       109 -------------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p  175 (346)
T KOG0989|consen  109 -------------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP  175 (346)
T ss_pred             -------------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence                         000000000000000  0123 58999999954  66777777765 3556666655544 333333


Q ss_pred             hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +......|..++|.+++ .-.-++.....++...+.   +..+.|++.++|--...++
T Consensus       176 i~SRC~KfrFk~L~d~~-iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR~Ait  229 (346)
T KOG0989|consen  176 LVSRCQKFRFKKLKDED-IVDRLEKIASKEGVDIDD---DALKLIAKISDGDLRRAIT  229 (346)
T ss_pred             HHhhHHHhcCCCcchHH-HHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence            33445678999999844 444344433333333333   3677888888887655444

>PRK06620 hypothetical protein; Validated

Probab=98.49  E-value=4.6e-06  Score=74.45  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQ  143 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~  143 (398)
                      ..+.|+|++|+|||+|++.+++..  ..     .++.   ....              .         .          .
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~---~~~~--------------~---------~----------~   81 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK---DIFF--------------N---------E----------E   81 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc---hhhh--------------c---------h----------h
Confidence            679999999999999999988762  11     1111   0000              0         0          0


Q ss_pred             HHhCCCcEEEecCCCCHHHHHHHHhHcC--CCCCCEEEEEeCChH-------HHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          144 QLIGKRYLIVLDDFEDMEVCKHLSKVLP--RGYGERLIITSRNEK-------LTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       144 ~l~~k~~LlVLDdv~~~~~~~~l~~~l~--~~~gs~IIiTTR~~~-------v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      .. ....++++||++.... ..+...+.  ...|..+|+|++...       +.+.+ ....++++++++. +....+++
T Consensus        82 ~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl-~~gl~~~l~~pd~-~~~~~~l~  157 (214)
T PRK06620         82 IL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI-KSVLSILLNSPDD-ELIKILIF  157 (214)
T ss_pred             HH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH-hCCceEeeCCCCH-HHHHHHHH
Confidence            01 2345889999985432 23333333  245778999987432       22333 3355899999998 66777777


Q ss_pred             hhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          215 DSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      +.+...+...++   ++..-|++.+.|--..+
T Consensus       158 k~~~~~~l~l~~---ev~~~L~~~~~~d~r~l  186 (214)
T PRK06620        158 KHFSISSVTISR---QIIDFLLVNLPREYSKI  186 (214)
T ss_pred             HHHHHcCCCCCH---HHHHHHHHHccCCHHHH
Confidence            765433333333   25555666665555443

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.49  E-value=3e-07  Score=87.53  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      ...+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...|..||++||+
T Consensus        81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187        81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            4556777777542 2233458999999999999999999999999999   4444444444332   2247889999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      ...+..+++
T Consensus       161 ~~e~~~~~d  169 (325)
T TIGR01187       161 QEEAMTMSD  169 (325)
T ss_pred             HHHHHHhCC
Confidence            887766533

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2.3e-06  Score=78.42  Aligned_cols=80  Identities=11%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      ..+++.+++..     ........+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||
T Consensus       124 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH  203 (250)
T PRK14245        124 EETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTH  203 (250)
T ss_pred             HHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            34556666532     12223358999999999999999999999999999   4444444443432 123678999999


Q ss_pred             ChHHHHHhc
Q 015891          184 NEKLTTEMV  192 (398)
Q Consensus       184 ~~~v~~~~~  192 (398)
                      +...+..++
T Consensus       204 ~~~~~~~~~  212 (250)
T PRK14245        204 NMQQAARVS  212 (250)
T ss_pred             CHHHHHhhC
Confidence            988765543

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=8.9e-07  Score=81.72  Aligned_cols=64  Identities=9%  Similarity=0.108  Sum_probs=48.1

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..++
T Consensus       155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~  222 (260)
T PRK10744        155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCS  222 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence            447899999999999999999999999999   4444444444432 123578999999988776543

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2.4e-06  Score=78.36  Aligned_cols=79  Identities=13%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             HHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCC
Q 015891          114 RILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRN  184 (398)
Q Consensus       114 ~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~  184 (398)
                      .+++.+++..     ........+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+
T Consensus       128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~  207 (251)
T PRK14244        128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS  207 (251)
T ss_pred             HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            4566666643     11223347899999999999999999999999998   4444444444432 1236889999999


Q ss_pred             hHHHHHhc
Q 015891          185 EKLTTEMV  192 (398)
Q Consensus       185 ~~v~~~~~  192 (398)
                      ...+..++
T Consensus       208 ~~~~~~~~  215 (251)
T PRK14244        208 MKQAKKVS  215 (251)
T ss_pred             HHHHHhhc
Confidence            88776543

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.49  E-value=5.9e-07  Score=80.71  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=81.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce--------------EEEEecCCc-------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR--------------IWVCTMSGQ-------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~--------------~~v~~v~~~-------------------  105 (398)
                      .-.+++|.|++|+|||||++.+....... .  .|+..              ..+.++.+.                   
T Consensus        30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~  109 (220)
T TIGR02982        30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL  109 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence            45799999999999999999997541100 0  00000              001111110                   


Q ss_pred             ---cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          106 ---KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       106 ---~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                         ..   .......+++.+++... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   .
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~  189 (220)
T TIGR02982       110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR  189 (220)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence               00   11234566777777542 2233458899999999999999999999999999   4444444444442   2


Q ss_pred             CCCCEEEEEeCChHHHH
Q 015891          173 GYGERLIITSRNEKLTT  189 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~  189 (398)
                      ..+..||++||+.++..
T Consensus       190 ~~~~tii~~sh~~~~~~  206 (220)
T TIGR02982       190 EQGCTILIVTHDNRILD  206 (220)
T ss_pred             HcCCEEEEEeCCHHHHh
Confidence            24789999999998653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2.3e-06  Score=79.52  Aligned_cols=71  Identities=8%  Similarity=0.052  Sum_probs=52.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+.++.++..+.+.+..++-++|||++.   |....+.+...+. ...+..||++||+......++  ++++.+.
T Consensus       160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~--d~i~~l~  234 (274)
T PRK14265        160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVA--DWTAFFN  234 (274)
T ss_pred             ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC--CEEEEEe
Confidence            347889999999999999999999999998   4444444444443 223578999999998877653  4555553

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.49  E-value=4.8e-06  Score=74.04  Aligned_cols=69  Identities=10%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..+|++||+...+..+   ++++.+
T Consensus       124 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~---d~v~~l  196 (207)
T cd03369         124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY---DKILVM  196 (207)
T ss_pred             CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC---CEEEEE
Confidence            347889999999999999999999999999   4444444444443 22478899999998876542   444444

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.49  E-value=3.7e-06  Score=76.00  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......   .++++.+
T Consensus       138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~i~~l  210 (229)
T cd03254         138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN---ADKILVL  210 (229)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh---CCEEEEE
Confidence            347889999999999999999999999999   4444443433332 1247789999999887654   2444444

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=2.1e-06  Score=80.04  Aligned_cols=129  Identities=15%  Similarity=0.086  Sum_probs=80.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cc-------------cc-eEEEEecCC----cccH------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QF-------------VP-RIWVCTMSG----QKTA------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F-------------~~-~~~v~~v~~----~~~~------------  108 (398)
                      .-.+++|+|++|+|||||++.+..-... ..  .|             .. +.++..-..    ..+.            
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~  111 (277)
T PRK13642         32 KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG  111 (277)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence            4568999999999999999999754110 00  00             00 111110000    0000            


Q ss_pred             ------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          109 ------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       109 ------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                            .+....+++.+++... .......+.+++++..+.+.+..++-++++|++.   |....+.+...+.   ...|
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g  191 (277)
T PRK13642        112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ  191 (277)
T ss_pred             CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                  1122445555565432 2223458999999999999999999999999998   4444444444443   2237


Q ss_pred             CEEEEEeCChHHHHH
Q 015891          176 ERLIITSRNEKLTTE  190 (398)
Q Consensus       176 s~IIiTTR~~~v~~~  190 (398)
                      ..||++||+...+..
T Consensus       192 ~tiil~sH~~~~~~~  206 (277)
T PRK13642        192 LTVLSITHDLDEAAS  206 (277)
T ss_pred             CEEEEEeCCHHHHHh
Confidence            899999999888753

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=3.2e-06  Score=79.88  Aligned_cols=64  Identities=9%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.|..++-+|+||++.   |......+...+. ...+..||++||+...+..++
T Consensus       199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~  266 (305)
T PRK14264        199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS  266 (305)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence            447899999999999999999999999999   4444444444443 122467999999998876653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.48  E-value=2.3e-06  Score=79.33  Aligned_cols=63  Identities=13%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......+
T Consensus       162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~  228 (267)
T PRK14237        162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARA  228 (267)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            457899999999999999999999999999   4433333333332 12357899999998776554

>PLN03073 ABC transporter F family; Provisional

Probab=98.48  E-value=1.5e-06  Score=90.90  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=50.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+++++++..|.+.|..++-+|+||++.   |......+...+.. .+..||++||+...+..+++
T Consensus       343 ~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~~~tviivsHd~~~l~~~~d  409 (718)
T PLN03073        343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-WPKTFIVVSHAREFLNTVVT  409 (718)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCC
Confidence            458999999999999999999999999999   44555555555532 25689999999988877543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=3.1e-06  Score=79.13  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=80.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC------CCcc--ccce-------------EEEEecCCcc-----cH------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD------VKTQ--FVPR-------------IWVCTMSGQK-----TA------  108 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~------~~~~--F~~~-------------~~v~~v~~~~-----~~------  108 (398)
                      ..-.+++|+|++|+|||||++.+..-..      ....  |...             .-+.++.+..     +.      
T Consensus        63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~  142 (285)
T PRK14254         63 PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAY  142 (285)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHH
Confidence            3456899999999999999999986421      0110  1000             0011111110     11      


Q ss_pred             -----------HHHHHHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH
Q 015891          109 -----------ESIVKRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV  169 (398)
Q Consensus       109 -----------~~~~~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~  169 (398)
                                 ......+++.+++..     ........+.+++++..+.+.+..++-+|+||++.   |....+.+...
T Consensus       143 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~  222 (285)
T PRK14254        143 GLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL  222 (285)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence                       112234555565531     12233458999999999999999999999999999   44444444444


Q ss_pred             cC-CCCCCEEEEEeCChHHHHHh
Q 015891          170 LP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       170 l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +. ...+..||++||+.+.+..+
T Consensus       223 L~~~~~~~tiii~tH~~~~i~~~  245 (285)
T PRK14254        223 IEELAEEYTVVIVTHNMQQAARI  245 (285)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHhh
Confidence            43 11236899999998877664

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.48  E-value=3.1e-06  Score=86.89  Aligned_cols=196  Identities=15%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+..++.|..++..   ..-...+.++|+.|+||||+|+.+++.  +......    . -...+..-.....+..
T Consensus        16 ~eiiGq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~----~-~~~~c~~c~~c~~i~~   85 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKA--VNCTTND----P-KGRPCGTCEMCRAIAE   85 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCC----C-CCCCCccCHHHHHHhc
Confidence            6789999999999998864   223456789999999999999999876  2111000    0 0001111112222222


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~  188 (398)
                      ..+..............+..+..+ ..+     ..++.++|+|+++  +.+..+.|...+.. ...+.+|+++.+ ..+.
T Consensus        86 ~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll  164 (585)
T PRK14950         86 GSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP  164 (585)
T ss_pred             CCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence            111110000000112223322222 222     2356799999998  34555666666543 235566665544 3444


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+......+++.+++. ++....+.+.+...+...++   +.+..|++.++|.+..+..
T Consensus       165 ~tI~SR~~~i~f~~l~~-~el~~~L~~~a~~egl~i~~---eal~~La~~s~Gdlr~al~  220 (585)
T PRK14950        165 ATILSRCQRFDFHRHSV-ADMAAHLRKIAAAEGINLEP---GALEAIARAATGSMRDAEN  220 (585)
T ss_pred             HHHHhccceeeCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            44445567889999988 55666666554433332222   3677888899998876553

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.48  E-value=2.3e-06  Score=77.28  Aligned_cols=131  Identities=19%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC----CCcc--ccc--------eEEEEecCCcc------cHHH----------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD----VKTQ--FVP--------RIWVCTMSGQK------TAES----------  110 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~----~~~~--F~~--------~~~v~~v~~~~------~~~~----------  110 (398)
                      ..-.+++|+|++|+|||||++.+..-..    ....  ++.        ...+.++.+..      +..+          
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~  110 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL  110 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhc
Confidence            3457899999999999999999976522    1110  100        00011111110      1100          


Q ss_pred             -----------HHHH-HHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891          111 -----------IVKR-ILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R  172 (398)
Q Consensus       111 -----------~~~~-il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~  172 (398)
                                 .... ++..+++.... ......+.++.++..+.+.+...+-++++|++.   |......+...+.  .
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~  190 (226)
T cd03234         111 PRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA  190 (226)
T ss_pred             ccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence                       1112 44445544321 222347889999999999999999999999998   4433334433332  1


Q ss_pred             CCCCEEEEEeCCh-HHHHHh
Q 015891          173 GYGERLIITSRNE-KLTTEM  191 (398)
Q Consensus       173 ~~gs~IIiTTR~~-~v~~~~  191 (398)
                      ..+..||+|||+. ..+..+
T Consensus       191 ~~~~tiii~sh~~~~~~~~~  210 (226)
T cd03234         191 RRNRIVILTIHQPRSDLFRL  210 (226)
T ss_pred             HCCCEEEEEecCCCHHHHHh
Confidence            2377999999996 344433

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=2.8e-06  Score=78.18  Aligned_cols=86  Identities=14%  Similarity=0.193  Sum_probs=58.2

Q ss_pred             HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      ..+++.+++..     ........+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...++.||++||
T Consensus       131 ~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh  210 (257)
T PRK14246        131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSH  210 (257)
T ss_pred             HHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEEC
Confidence            34455566532     12233347889999999999999999999999999   4444444444443 123589999999


Q ss_pred             ChHHHHHhcCCCceEEc
Q 015891          184 NEKLTTEMVGEENLHQL  200 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l  200 (398)
                      +...+..++  ++++.+
T Consensus       211 ~~~~~~~~~--d~v~~l  225 (257)
T PRK14246        211 NPQQVARVA--DYVAFL  225 (257)
T ss_pred             CHHHHHHhC--CEEEEE
Confidence            998876643  344444

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.48  E-value=2.2e-06  Score=87.28  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=57.2

Q ss_pred             HHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891          113 KRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS  182 (398)
Q Consensus       113 ~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT  182 (398)
                      .++++.+++...    .......+++++++..+++.+..++-+|+||++.   |....+.+...+.   ...|..||++|
T Consensus       135 ~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt  214 (529)
T PRK15134        135 LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT  214 (529)
T ss_pred             HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            455666777531    2234458999999999999999999999999999   4444444443332   22367899999


Q ss_pred             CChHHHHHhc
Q 015891          183 RNEKLTTEMV  192 (398)
Q Consensus       183 R~~~v~~~~~  192 (398)
                      |+.+.+..++
T Consensus       215 Hd~~~~~~~~  224 (529)
T PRK15134        215 HNLSIVRKLA  224 (529)
T ss_pred             CcHHHHHHhc
Confidence            9988776643

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.48  E-value=3.4e-06  Score=78.24  Aligned_cols=80  Identities=13%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHh---------CCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLI---------GKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~---------~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                      ...+++.+++... .......+.++.++..+.+.+.         .++-+++||++.   |....+.+...+.   ...+
T Consensus       126 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~  205 (272)
T PRK13547        126 AWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN  205 (272)
T ss_pred             HHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC
Confidence            3455666666532 2223448899999999999998         489999999998   4444444444443   2237


Q ss_pred             CEEEEEeCChHHHHHh
Q 015891          176 ERLIITSRNEKLTTEM  191 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~  191 (398)
                      ..||++||+......+
T Consensus       206 ~tviiisH~~~~~~~~  221 (272)
T PRK13547        206 LGVLAIVHDPNLAARH  221 (272)
T ss_pred             CEEEEEECCHHHHHHh
Confidence            8899999998876554

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.47  E-value=2.9e-06  Score=87.32  Aligned_cols=190  Identities=12%  Similarity=0.156  Sum_probs=104.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .+++|.+..++.|...+..   ..-...+.++|+.|+||||+|+.+++...-.....       ....  ......    
T Consensus        18 ~dIiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~-------~~~p--C~~C~~----   81 (725)
T PRK07133         18 DDIVGQDHIVQTLKNIIKS---NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD-------LLEP--CQECIE----   81 (725)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC-------CCCc--hhHHHH----
Confidence            5789999999999999964   23456778999999999999999987621111000       0000  000000    


Q ss_pred             HcCCCCCC--CCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEE-EEeCChH
Q 015891          118 RLGVDDGT--TNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLI-ITSRNEK  186 (398)
Q Consensus       118 ~l~~~~~~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~II-iTTR~~~  186 (398)
                      ..+.....  .......+.+..+. +...+     .+++.++|+|+++  +......|...+-.- ..+.+| +|++...
T Consensus        82 ~~~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K  160 (725)
T PRK07133         82 NVNNSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK  160 (725)
T ss_pred             hhcCCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence            01110000  00000112222222 22222     2456799999998  445566666666422 244444 4544455


Q ss_pred             HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +...+......+++.+++. ++....+...+...+....+   +.+..|++.++|-+..+..
T Consensus       161 Ll~TI~SRcq~ieF~~L~~-eeI~~~L~~il~kegI~id~---eAl~~LA~lS~GslR~Als  218 (725)
T PRK07133        161 IPLTILSRVQRFNFRRISE-DEIVSRLEFILEKENISYEK---NALKLIAKLSSGSLRDALS  218 (725)
T ss_pred             hhHHHHhhceeEEccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            5555545567899999998 55665665544332222222   2566788888887765443

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=2.9e-06  Score=78.66  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=47.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..++
T Consensus       163 ~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~  230 (268)
T PRK14248        163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVS  230 (268)
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhC
Confidence            348899999999999999999999999999   4444444444332 122578999999988766543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.47  E-value=3.2e-06  Score=76.65  Aligned_cols=69  Identities=12%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......   .++++.+
T Consensus       137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~v~~l  209 (234)
T cd03251         137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN---ADRIVVL  209 (234)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh---CCEEEEe
Confidence            347889999999999999999999999998   4444444444443 2246789999999887754   2444444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=2.9e-06  Score=78.95  Aligned_cols=64  Identities=16%  Similarity=0.150  Sum_probs=48.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..++
T Consensus       162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~  229 (276)
T PRK14271        162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARIS  229 (276)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            347899999999999999999999999999   4444444444433 122478999999998766643

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.46  E-value=4.1e-06  Score=83.90  Aligned_cols=194  Identities=15%  Similarity=0.194  Sum_probs=108.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC--CccccceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV--KTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ++++|-+...+.|...+..   ..-...+.++|+.|+||||+|+.+++...-  ...+.. +..+         .....+
T Consensus        14 deiiGqe~v~~~L~~~I~~---grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p-C~~C---------~~C~~~   80 (535)
T PRK08451         14 DELIGQESVSKTLSLALDN---NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP-CDTC---------IQCQSA   80 (535)
T ss_pred             HHccCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC-Cccc---------HHHHHH
Confidence            6789999999999999864   234556789999999999999988765210  011100 0000         000000


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCCh-HH
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNE-KL  187 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v  187 (398)
                      .................+.+..+..+...    ..++.-++|+|+++  +.+..+.|...+. ..+.+++|++|.+. .+
T Consensus        81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL  160 (535)
T PRK08451         81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL  160 (535)
T ss_pred             hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence            00000000000000011233333333221    11345699999998  4456666666664 23456777777653 33


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ...+......+++.+++. ++....+.+.+...+....+   +.+..|++.++|-+..+..
T Consensus       161 ~~tI~SRc~~~~F~~Ls~-~ei~~~L~~Il~~EGi~i~~---~Al~~Ia~~s~GdlR~aln  217 (535)
T PRK08451        161 PATILSRTQHFRFKQIPQ-NSIISHLKTILEKEGVSYEP---EALEILARSGNGSLRDTLT  217 (535)
T ss_pred             chHHHhhceeEEcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence            333444567899999998 55666666655444333222   3667888889998866544

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.46  E-value=2.3e-05  Score=78.12  Aligned_cols=157  Identities=14%  Similarity=0.206  Sum_probs=90.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY  139 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  139 (398)
                      ....+.|+|++|+|||+|++++++.  ....+..  ++++.       ...+...+...+..          ..    ..
T Consensus       147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~-------~~~~~~~~~~~~~~----------~~----~~  203 (450)
T PRK00149        147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVT-------SEKFTNDFVNALRN----------NT----ME  203 (450)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEE-------HHHHHHHHHHHHHc----------Cc----HH
Confidence            3467899999999999999999987  4443322  33444       22233334433321          11    12


Q ss_pred             HHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCChH---------HHHHhcCCCceEEcCCCC
Q 015891          140 VLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNEK---------LTTEMVGEENLHQLQPLS  204 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~~---------v~~~~~~~~~~~~l~~L~  204 (398)
                      .+...+. +.-+|+|||++..    ...+.+...+.  ...+..||+||....         +...+ .....+++++.+
T Consensus       204 ~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl-~~gl~v~i~~pd  281 (450)
T PRK00149        204 EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF-EWGLTVDIEPPD  281 (450)
T ss_pred             HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh-cCCeeEEecCCC
Confidence            2333333 4669999999732    22233333332  223556777776431         12222 234578999999


Q ss_pred             ChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          205 DQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       205 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      . +....++++.+...+...++   +...-|++.+.|....+.
T Consensus       282 ~-~~r~~il~~~~~~~~~~l~~---e~l~~ia~~~~~~~R~l~  320 (450)
T PRK00149        282 L-ETRIAILKKKAEEEGIDLPD---EVLEFIAKNITSNVRELE  320 (450)
T ss_pred             H-HHHHHHHHHHHHHcCCCCCH---HHHHHHHcCcCCCHHHHH
Confidence            8 66777777755433333333   367778888887776544

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.8e-06  Score=82.22  Aligned_cols=66  Identities=8%  Similarity=0.059  Sum_probs=48.9

Q ss_pred             CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891          128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ....+.+++++..+++++..++-+|+|||+.   |......+...+. ...+++||++||+.+.+..+++
T Consensus       223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~D  292 (329)
T PRK14257        223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISD  292 (329)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            3448899999999999999999999999999   4433333433333 2236889999999888776433

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.46  E-value=2.6e-06  Score=78.26  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......+
T Consensus       147 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~  213 (252)
T PRK14239        147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRI  213 (252)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHh
Confidence            347899999999999999999999999999   4444444444433 12357899999998766554

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.46  E-value=1.4e-06  Score=84.96  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      +.+++.+.+..|++.|-.+|.|++|||+.   |.+....|..++..-....++|++|+++....+|.
T Consensus       221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT  287 (614)
T KOG0927|consen  221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCT  287 (614)
T ss_pred             ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhh
Confidence            47899999999999999999999999999   55555556666642212279999999988877654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.46  E-value=1.8e-06  Score=81.44  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=97.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc-------------------eEEEEe---cCCcc-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP-------------------RIWVCT---MSGQK-----------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~-------------------~~~v~~---v~~~~-----------  106 (398)
                      .-..++|+|.+|+|||||.+++..-..-..  .|.+                   ++|-+-   ++...           
T Consensus       312 ~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~  391 (534)
T COG4172         312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR  391 (534)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence            456899999999999999999954311000  1111                   111110   11111           


Q ss_pred             ---------cHHHHHHHHHHHcCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHh
Q 015891          107 ---------TAESIVKRILKRLGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSK  168 (398)
Q Consensus       107 ---------~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~  168 (398)
                               ...+.....+...|++...  ..+.+.+++++++..+++.+--|+-+|+||++.+.       ..++.|+ 
T Consensus       392 vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr-  470 (534)
T COG4172         392 VHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR-  470 (534)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH-
Confidence                     1223344566777777643  33456899999999999999999999999999954       2223333 


Q ss_pred             HcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          169 VLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       169 ~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      .+....+-.-|++|||-.|...++....+++-+..-+...+..+|.
T Consensus       471 ~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         471 DLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             HHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence            2334568889999999999988765544455444444344555553

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.46  E-value=1.4e-06  Score=76.59  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             HHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChH
Q 015891          114 RILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEK  186 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~  186 (398)
                      ..+..+|+.+...... ..+++++++..++++|..++-+|+-|++.   |+...+.+...+.   ...|.+||++.|+-+
T Consensus       130 ~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd  209 (258)
T COG3638         130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD  209 (258)
T ss_pred             HHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence            4455566554333222 37999999999999999999999999988   4433333333332   456899999999999


Q ss_pred             HHHHhcC
Q 015891          187 LTTEMVG  193 (398)
Q Consensus       187 v~~~~~~  193 (398)
                      ++...+.
T Consensus       210 lA~~Y~~  216 (258)
T COG3638         210 LAKKYAD  216 (258)
T ss_pred             HHHHHHh
Confidence            8887643

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.6e-06  Score=79.69  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR  183 (398)
                      ..+++.+++..     ........+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||
T Consensus       126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH  205 (252)
T PRK14256        126 ESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH  205 (252)
T ss_pred             HHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence            44555566532     11223347899999999999999999999999999   3433333333332 122468999999


Q ss_pred             ChHHHHHhcC
Q 015891          184 NEKLTTEMVG  193 (398)
Q Consensus       184 ~~~v~~~~~~  193 (398)
                      +......+++
T Consensus       206 ~~~~~~~~~d  215 (252)
T PRK14256        206 NMQQAARVSD  215 (252)
T ss_pred             CHHHHHhhCC
Confidence            9887665433

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.6e-06  Score=78.04  Aligned_cols=65  Identities=9%  Similarity=0.143  Sum_probs=48.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |......+...+. ...+..||++||+.+....+++
T Consensus       144 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d  212 (249)
T PRK14253        144 FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISD  212 (249)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC
Confidence            347889999999999999999999999999   4444444444443 1235789999999887766533

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.45  E-value=7.2e-06  Score=81.95  Aligned_cols=189  Identities=15%  Similarity=0.142  Sum_probs=101.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC--CccccceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV--KTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      .+++|.+..++.|..++..   ..-...+.++|+.|+||||+|+.++....-  ....+.      +....+..    .+
T Consensus        16 ~diiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~p------c~~c~nc~----~i   82 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEP------CGKCENCV----EI   82 (486)
T ss_pred             HHccChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCccHHHH----HH
Confidence            5689999999999999964   223456788999999999999999775210  000000      00000000    00


Q ss_pred             HHHcCCCCCCC---CCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEeCC
Q 015891          116 LKRLGVDDGTT---NSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITSRN  184 (398)
Q Consensus       116 l~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTTR~  184 (398)
                      .   +......   ......+.+..+ .+...+     .+++-++|+|+++.  ....+.|...+... +...+|++|.+
T Consensus        83 ~---~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~  158 (486)
T PRK14953         83 D---KGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE  158 (486)
T ss_pred             h---cCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence            0   0000000   000011122212 122222     24567999999983  35555666566432 34455555543


Q ss_pred             -hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          185 -EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       185 -~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                       ..+...+......+.+.+++. +.....+.+.+...+...++   +.+..|++.++|.+..+.
T Consensus       159 ~~kl~~tI~SRc~~i~f~~ls~-~el~~~L~~i~k~egi~id~---~al~~La~~s~G~lr~al  218 (486)
T PRK14953        159 YDKIPPTILSRCQRFIFSKPTK-EQIKEYLKRICNEEKIEYEE---KALDLLAQASEGGMRDAA  218 (486)
T ss_pred             HHHHHHHHHHhceEEEcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence             344434334456899999988 55665666544333322222   256677888888776544

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=3.3e-06  Score=77.90  Aligned_cols=63  Identities=10%  Similarity=0.144  Sum_probs=47.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |......+...+. ...+..||++||+.+....+
T Consensus       154 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~  220 (259)
T PRK14274        154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARV  220 (259)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence            347899999999999999999999999999   4444444444332 12357899999998776654

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=3.3e-06  Score=77.87  Aligned_cols=65  Identities=12%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+.+++++..+.+++..++-+++||++.   |......+...+. ...+..||++||+...+..+++
T Consensus       149 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d  217 (259)
T PRK14260        149 LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD  217 (259)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence            347899999999999999999999999999   4433333333332 1224789999999887776543

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.45  E-value=4.9e-06  Score=75.59  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=50.1

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...|..||++||+......   .++++.+
T Consensus       137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~---~d~~~~l  208 (236)
T cd03253         137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN---ADKIIVL  208 (236)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh---CCEEEEE
Confidence            47889999999999999999999999999   4444444444442 1227789999999887754   3445544

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.44  E-value=4.7e-06  Score=81.17  Aligned_cols=178  Identities=16%  Similarity=0.267  Sum_probs=100.6

Q ss_pred             CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      -.++.|.+..+++|.+.+...         .+-...+.+.|+|++|+|||+||+++++.  ....|     +. +..   
T Consensus       144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~-i~~---  212 (398)
T PTZ00454        144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IR-VVG---  212 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EE-Eeh---
Confidence            366889999999888876420         12235678999999999999999999987  33333     22 111   


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhH---cC
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKV---LP  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~---l~  171 (398)
                       ..+...   .++           .........+.......+.+|+|||++..             .....+...   +.
T Consensus       213 -s~l~~k---~~g-----------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld  277 (398)
T PTZ00454        213 -SEFVQK---YLG-----------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD  277 (398)
T ss_pred             -HHHHHH---hcc-----------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence             111111   011           11122333444445567899999997732             111122222   21


Q ss_pred             ---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          172 ---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       172 ---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                         ...+..||+||...+.... +.   ..+..+++++.+. ++...+|+..........+.    ...++++...|..-
T Consensus       278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~-~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~sg  352 (398)
T PTZ00454        278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR-RQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKISA  352 (398)
T ss_pred             ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH-HHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCCH
Confidence               2245678888886554322 11   2356788866665 66777777655433222111    34566667766654


Q ss_pred             h
Q 015891          245 D  245 (398)
Q Consensus       245 a  245 (398)
                      |
T Consensus       353 a  353 (398)
T PTZ00454        353 A  353 (398)
T ss_pred             H
Confidence            3

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.44  E-value=4e-05  Score=77.61  Aligned_cols=154  Identities=14%  Similarity=0.210  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ..+.|+|..|+|||.|++++++.  ....+  ..+.|+.       ...++..+...+..          ..    ...+
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit-------aeef~~el~~al~~----------~~----~~~f  371 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS-------SEEFTNEFINSIRD----------GK----GDSF  371 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee-------HHHHHHHHHHHHHh----------cc----HHHH
Confidence            45899999999999999999987  33222  1234444       23333343333211          01    1123


Q ss_pred             HHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCCCh
Q 015891          142 QQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLSDQ  206 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~~~  206 (398)
                      .+.+. +.-+|||||+..    ..+.+.|...+.  ...+..|||||+..         .+.+.+ ....++++++.+. 
T Consensus       372 ~~~y~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf-~~GLvv~I~~PD~-  448 (617)
T PRK14086        372 RRRYR-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF-EWGLITDVQPPEL-  448 (617)
T ss_pred             HHHhh-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh-hcCceEEcCCCCH-
Confidence            33333 357899999983    233344444444  33466788888752         223333 3466889999998 


Q ss_pred             hHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          207 ESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       207 e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      +....++++.+.......+.   +++.-|++++.+....+
T Consensus       449 EtR~aIL~kka~~r~l~l~~---eVi~yLa~r~~rnvR~L  485 (617)
T PRK14086        449 ETRIAILRKKAVQEQLNAPP---EVLEFIASRISRNIREL  485 (617)
T ss_pred             HHHHHHHHHHHHhcCCCCCH---HHHHHHHHhccCCHHHH
Confidence            77777877765544444333   35666677666554443

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=2.1e-06  Score=78.76  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+.+.+..+
T Consensus       145 ~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~  211 (250)
T PRK14262        145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRI  211 (250)
T ss_pred             hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence            347889999999999999999999999998   4444444444432 12357899999998866554

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.44  E-value=5.7e-06  Score=84.25  Aligned_cols=195  Identities=14%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+...+.|...+..   ..-...+.++|+.|+||||+|+.+.+...-...-.        ..+.+.-.....+..
T Consensus        16 ~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~--------~~pC~~C~~C~~i~~   84 (559)
T PRK05563         16 EDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD--------GEPCNECEICKAITN   84 (559)
T ss_pred             HhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccHHHHHHhc
Confidence            6789999999999999975   22356678899999999999999976521111000        000000001111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCCC-CCEEE-EEeCChHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRGY-GERLI-ITSRNEKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~-gs~II-iTTR~~~v~~  189 (398)
                      ....+..........+.+..+..+...    ...+.-++|+|+++  +......|...+..-+ .+.+| .||....+..
T Consensus        85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~  164 (559)
T PRK05563         85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA  164 (559)
T ss_pred             CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence            100000000000112233322222221    13456799999999  4455566666664322 34444 4444444444


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......+++.+++. ++....+...+...+...++   +.+..|++.++|-+..+.
T Consensus       165 tI~SRc~~~~f~~~~~-~ei~~~L~~i~~~egi~i~~---~al~~ia~~s~G~~R~al  218 (559)
T PRK05563        165 TILSRCQRFDFKRISV-EDIVERLKYILDKEGIEYED---EALRLIARAAEGGMRDAL  218 (559)
T ss_pred             HHHhHheEEecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            4444566889999988 55666666644433332222   256677788888776543

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=4.2e-06  Score=77.28  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=49.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+..||++||+...+..+++
T Consensus       149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d  219 (261)
T PRK14258        149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD  219 (261)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcC
Confidence            348899999999999999999999999998   4444444444433   1247899999999988776543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.44  E-value=2e-06  Score=89.21  Aligned_cols=70  Identities=19%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+++++++-.+++.+-.+|-+|+||++.   |.+....+...+. ...|.++|++||.......+   ++++-++
T Consensus       608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~a---drIiVl~  681 (709)
T COG2274         608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSA---DRIIVLD  681 (709)
T ss_pred             CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhc---cEEEEcc
Confidence            348999999999999999999999999999   4444444444443 34567778778777666654   4455443

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.43  E-value=6.6e-06  Score=73.81  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh--HcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK--VLP--RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~--~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.+++++..+.+.+..++-++++|++.   |....+.+..  .+.  ...+.+||++||+......   .++++.+
T Consensus       139 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~---~d~i~~l  214 (218)
T cd03290         139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH---ADWIIAM  214 (218)
T ss_pred             CcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh---CCEEEEe
Confidence            347899999999999999999999999999   4433333322  111  2347899999999887643   2445544

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.43  E-value=6.3e-06  Score=76.78  Aligned_cols=126  Identities=16%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----EEecCCcc-----cHH-----------HHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----VCTMSGQK-----TAE-----------SIVKRILKRLG  120 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----v~~v~~~~-----~~~-----------~~~~~il~~l~  120 (398)
                      ..-.+++|+|++|+|||||++.++......   .+.++    +.++.+..     +..           .....++..++
T Consensus        61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~  137 (282)
T cd03291          61 EKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ  137 (282)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhC
Confidence            345689999999999999999998762111   11111    11111110     000           01122222222


Q ss_pred             CCC---------C---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh-HcC-CCCCCEEEEEeC
Q 015891          121 VDD---------G---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK-VLP-RGYGERLIITSR  183 (398)
Q Consensus       121 ~~~---------~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~-~l~-~~~gs~IIiTTR  183 (398)
                      +..         .   .......+.+++++..+.+.+..++-+++||++.   |....+.+.. .+. ...+..||++||
T Consensus       138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH  217 (282)
T cd03291         138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS  217 (282)
T ss_pred             CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence            210         0   0111347889999999999999999999999998   4444333332 111 123678999999


Q ss_pred             ChHHHH
Q 015891          184 NEKLTT  189 (398)
Q Consensus       184 ~~~v~~  189 (398)
                      +.....
T Consensus       218 ~~~~~~  223 (282)
T cd03291         218 KMEHLK  223 (282)
T ss_pred             ChHHHH
Confidence            988765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.43  E-value=5.6e-06  Score=85.04  Aligned_cols=198  Identities=12%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ..++|.+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-......      .......-...+.+..
T Consensus        16 ~~liGq~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~------~~~~Cg~C~~C~~i~~   86 (620)
T PRK14948         16 DELVGQEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP------TPEPCGKCELCRAIAA   86 (620)
T ss_pred             hhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC------CCCCCcccHHHHHHhc
Confidence            5789999999999999965   122357889999999999999999887211100000      0001111111122221


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC--CHHHHHHHHhHcCCCC-CCEEEEEeCC-hHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE--DMEVCKHLSKVLPRGY-GERLIITSRN-EKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~-gs~IIiTTR~-~~v~~  189 (398)
                      .................+..+..+...-    .++.-++|+|+++  +.+..+.|...+..-+ .+.+|++|.+ ..+..
T Consensus        87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp  166 (620)
T PRK14948         87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP  166 (620)
T ss_pred             CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence            1111100000001123334443332221    2345799999999  4455666666665332 3444544544 44554


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+......+++.+++. ++....+.+.+...+....+   +.+..|++.++|.+..+..
T Consensus       167 TIrSRc~~~~f~~l~~-~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~~  221 (620)
T PRK14948        167 TIISRCQRFDFRRIPL-EAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAES  221 (620)
T ss_pred             HHHhheeEEEecCCCH-HHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            5545567889999988 55555555544333222222   2567788888888765544

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.43  E-value=4.4e-06  Score=76.02  Aligned_cols=61  Identities=16%  Similarity=0.162  Sum_probs=47.2

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHH
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTT  189 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~  189 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...|..||++||+...+.
T Consensus       138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~  202 (238)
T cd03249         138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR  202 (238)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence            347899999999999999999999999999   4444444444442 125788999999988775

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.43  E-value=6.1e-06  Score=74.48  Aligned_cols=237  Identities=16%  Similarity=0.185  Sum_probs=130.3

Q ss_pred             CCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      .+|||.++..++|.-.+... ......--+.++||+|.||||||..+++.  +...+..    . -.....-..-+..++
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~----t-sGp~leK~gDlaaiL   98 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI----T-SGPALEKPGDLAAIL   98 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe----c-ccccccChhhHHHHH
Confidence            68999999999988877652 24455678999999999999999999998  4333221    1 011111011111111


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcC---------CCCCCE--------
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLP---------RGYGER--------  177 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~---------~~~gs~--------  177 (398)
                      ..                           -.+.-++.+|+++  +....+.|.....         .++++|        
T Consensus        99 t~---------------------------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp  151 (332)
T COG2255          99 TN---------------------------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP  151 (332)
T ss_pred             hc---------------------------CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence            11                           1245678888888  3333333332221         233443        


Q ss_pred             ---EEEEeCChHHHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCCh
Q 015891          178 ---LIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSK  253 (398)
Q Consensus       178 ---IIiTTR~~~v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~l  253 (398)
                         |=.|||--.+...+.+ -..+.+++.-+. ++......+....-+...++   +.+.+|+++..|.|.-...     
T Consensus       152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~-~eL~~Iv~r~a~~l~i~i~~---~~a~eIA~rSRGTPRIAnR-----  222 (332)
T COG2255         152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTV-EELEEIVKRSAKILGIEIDE---EAALEIARRSRGTPRIANR-----  222 (332)
T ss_pred             eeEeeeccccccccchhHHhcCCeeeeecCCH-HHHHHHHHHHHHHhCCCCCh---HHHHHHHHhccCCcHHHHH-----
Confidence               3367886544333322 245667776676 66777777644433333333   3677899999999974222     


Q ss_pred             HHHHHHhh---hhcCCchhHHhHHHHHhhhccCCCCCCcchhhhhhHHHHHHHHHhhhcchHhhhHHHHHHHHHhCCchH
Q 015891          254 QLVEELGK---LQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPL  330 (398)
Q Consensus       254 pl~~~lg~---~l~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~sy~~l~~e~cf~~~~~~~~~~~il~~~g~~~~  330 (398)
                       |++.+-.   .-....-+......+|+.+.                       -..+-+...|..+..-+...++.-|.
T Consensus       223 -LLrRVRDfa~V~~~~~I~~~ia~~aL~~L~-----------------------Vd~~GLd~~D~k~L~~li~~f~GgPV  278 (332)
T COG2255         223 -LLRRVRDFAQVKGDGDIDRDIADKALKMLD-----------------------VDELGLDEIDRKYLRALIEQFGGGPV  278 (332)
T ss_pred             -HHHHHHHHHHHhcCCcccHHHHHHHHHHhC-----------------------cccccccHHHHHHHHHHHHHhCCCCc
Confidence             1221111   01000011111222222211                       11233445666778888888888899


Q ss_pred             HHHHHhhhhhh
Q 015891          331 AAKLLGEIKAQ  341 (398)
Q Consensus       331 ~~~~l~~~~~~  341 (398)
                      |+..++..++.
T Consensus       279 Gl~tia~~lge  289 (332)
T COG2255         279 GLDTIAAALGE  289 (332)
T ss_pred             cHHHHHHHhcC
Confidence            88888766443

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=4.7e-06  Score=76.54  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+.+.+..+++
T Consensus       147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d  215 (252)
T PRK14255        147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISD  215 (252)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCC
Confidence            347889999999999999999999999999   4444444444332 1224689999999887766433

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.42  E-value=7e-06  Score=81.29  Aligned_cols=158  Identities=18%  Similarity=0.247  Sum_probs=91.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCcccc--ceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV--PRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ...+.|+|++|+|||+|++++++.  +...+.  .+.|++       ...++..+...+...          ..    ..
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~-------~~~f~~~~~~~~~~~----------~~----~~  186 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT-------SEKFLNDLVDSMKEG----------KL----NE  186 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE-------HHHHHHHHHHHHhcc----------cH----HH
Confidence            446999999999999999999987  433322  244544       234455555444211          11    12


Q ss_pred             HHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeC-ChHHHHHh----c---CCCceEEcCCCCCh
Q 015891          141 LQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSR-NEKLTTEM----V---GEENLHQLQPLSDQ  206 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR-~~~v~~~~----~---~~~~~~~l~~L~~~  206 (398)
                      +...+..+.-+|++||++..    ...+.+...+.  ...+..||+||+ ...-...+    .   .....+++++.+. 
T Consensus       187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~-  265 (440)
T PRK14088        187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE-  265 (440)
T ss_pred             HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH-
Confidence            33344446779999999832    11122333332  223557888874 43322211    1   2245788999988 


Q ss_pred             hHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          207 ESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       207 e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      +....++++.+.......++   +...-|++.+.|....+.
T Consensus       266 e~r~~IL~~~~~~~~~~l~~---ev~~~Ia~~~~~~~R~L~  303 (440)
T PRK14088        266 ETRKKIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR  303 (440)
T ss_pred             HHHHHHHHHHHHhcCCCCCH---HHHHHHHhccccCHHHHH
Confidence            77777777755443333333   366777777777655543

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.42  E-value=2.8e-06  Score=87.40  Aligned_cols=135  Identities=15%  Similarity=0.226  Sum_probs=84.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-----------------EEecCCc-----------------c
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-----------------VCTMSGQ-----------------K  106 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-----------------v~~v~~~-----------------~  106 (398)
                      ..-..++|+|++|+|||||++.+..-...   ..+.+.                 +.++.++                 .
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~  440 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN  440 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc
Confidence            45678999999999999999999764111   111111                 1111111                 1


Q ss_pred             cHHHHHHHHHHHcCCCCCC-----------CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          107 TAESIVKRILKRLGVDDGT-----------TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~-----------~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                      ...+.+...++..++.+.-           ......+++++++..+++.+-.++-++||||+.   |.+..+.+...+. 
T Consensus       441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~  520 (574)
T PRK11160        441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE  520 (574)
T ss_pred             cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1222344555555543210           112337889999999999999999999999999   4454455554443 


Q ss_pred             CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+.++|++||.......   .++++.++
T Consensus       521 ~~~~~tviiitHr~~~~~~---~d~i~~l~  547 (574)
T PRK11160        521 HAQNKTVLMITHRLTGLEQ---FDRICVMD  547 (574)
T ss_pred             HcCCCEEEEEecChhHHHh---CCEEEEEe
Confidence            2346788888888766554   35556553

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.42  E-value=3.4e-06  Score=87.96  Aligned_cols=137  Identities=14%  Similarity=0.098  Sum_probs=86.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCcc------------------------cHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQK------------------------TAESIVK  113 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~~------------------------~~~~~~~  113 (398)
                      ..-..++|+|++|+|||||++.+..-... ...  ++...-+.++.+..                        ...+...
T Consensus       476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~  555 (659)
T TIGR00954       476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLE  555 (659)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHH
Confidence            34568999999999999999999765111 110  11000011111110                        0122345


Q ss_pred             HHHHHcCCCCCCC----------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEE
Q 015891          114 RILKRLGVDDGTT----------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLII  180 (398)
Q Consensus       114 ~il~~l~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIi  180 (398)
                      ++++.+++.....          .....+++++++..+++.+..++-+++||++.   |.+..+.+...+.. .+..+|+
T Consensus       556 ~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~-~~~tvI~  634 (659)
T TIGR00954       556 QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE-FGITLFS  634 (659)
T ss_pred             HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH-cCCEEEE
Confidence            5666666543111          11348899999999999999999999999999   45555555555543 3778999


Q ss_pred             EeCChHHHHHhcCCCceEEcC
Q 015891          181 TSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       181 TTR~~~v~~~~~~~~~~~~l~  201 (398)
                      +||+......   .++++.++
T Consensus       635 isH~~~~~~~---~d~il~l~  652 (659)
T TIGR00954       635 VSHRKSLWKY---HEYLLYMD  652 (659)
T ss_pred             EeCchHHHHh---CCEEEEEe
Confidence            9999887654   35666664

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.42  E-value=3e-06  Score=87.52  Aligned_cols=69  Identities=10%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..+++++++-.+++.+-.++-++||||+.   |.+....+...+. ...+.++|++||+......+   ++++.++
T Consensus       480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~---D~Ii~l~  552 (582)
T PRK11176        480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA---DEILVVE  552 (582)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC---CEEEEEE
Confidence            47899999999999999999999999999   4444444444443 23568889999988776553   4555553

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=4.1e-06  Score=76.93  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=48.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+......++
T Consensus       147 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~  214 (252)
T PRK14272        147 TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVS  214 (252)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence            347899999999999999999999999999   4444444444443 123588999999998776543

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.42  E-value=2.2e-06  Score=88.20  Aligned_cols=69  Identities=12%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..+++++++-.+.+.+-.++-+++||++.   |....+.+...+. ..++..+|+.||+......+   ++++.++
T Consensus       469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~---D~ii~l~  541 (571)
T TIGR02203       469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA---DRIVVMD  541 (571)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhC---CEEEEEe
Confidence            37899999999999999999999999999   4444455554444 33568899999998776653   5566663

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=4.3e-06  Score=76.84  Aligned_cols=63  Identities=13%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.+++++..+.+.+...+-+++||++.   |....+.+...+. ...+..||++||+......+
T Consensus       148 ~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~  214 (253)
T PRK14261        148 LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARV  214 (253)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhh
Confidence            347899999999999999999999999998   4444444444433 12247899999998877654

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.41  E-value=4.7e-06  Score=82.66  Aligned_cols=194  Identities=15%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cc-eEEEEecCCcccHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VP-RIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~-~~~v~~v~~~~~~~~~~~~  114 (398)
                      -++++|.+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-...- +. .+-.+     .+.    ..
T Consensus        16 ~~diiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c-----~~C----~~   83 (451)
T PRK06305         16 FSEILGQDAVVAVLKNALRF---NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC-----ASC----KE   83 (451)
T ss_pred             HHHhcCcHHHHHHHHHHHHc---CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc-----HHH----HH
Confidence            36799999999999999964   2234678899999999999999997752111000 00 00000     000    00


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCC-h
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRN-E  185 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~-~  185 (398)
                      +...-.............+.+..+. +...+     ..++-++|+||++.  ....+.|...+.. ...+.+|++|.+ .
T Consensus        84 i~~~~~~d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~  162 (451)
T PRK06305         84 ISSGTSLDVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH  162 (451)
T ss_pred             HhcCCCCceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence            0000000000000000011222221 11222     25677999999983  3455566666643 235556666543 4


Q ss_pred             HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          186 KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       186 ~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+...+......+++.+++. ++....+.+.+...+...+   .+.+..|++.++|.+..+.
T Consensus       163 kl~~tI~sRc~~v~f~~l~~-~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~  220 (451)
T PRK06305        163 KIPGTILSRCQKMHLKRIPE-ETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAE  220 (451)
T ss_pred             hcchHHHHhceEEeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence            44444445567899999998 5566666654433332222   2366778888888765444

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.41  E-value=2.3e-06  Score=97.41  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-------------ceEEEEe---cCCccc---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-------------PRIWVCT---MSGQKT---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-------------~~~~v~~---v~~~~~---------------  107 (398)
                      .-.+++|.|++|+|||||++.+..-..-. .  .+.             ...++..   +....+               
T Consensus       955 ~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~ 1034 (2272)
T TIGR01257       955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS 1034 (2272)
T ss_pred             CCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCC
Confidence            45689999999999999999997642100 0  000             0111110   000000               


Q ss_pred             ---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEE
Q 015891          108 ---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLI  179 (398)
Q Consensus       108 ---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~II  179 (398)
                         ..+...++++.+++.... ......+++++++..+++++..++-+|+||++.   |....+.+...+. ...|..||
T Consensus      1035 ~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TII 1114 (2272)
T TIGR01257      1035 WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114 (2272)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEE
Confidence               112345677778876532 233458999999999999999999999999999   4433333333322 12478899


Q ss_pred             EEeCChHHHHHhcC
Q 015891          180 ITSRNEKLTTEMVG  193 (398)
Q Consensus       180 iTTR~~~v~~~~~~  193 (398)
                      +|||+.+.+..+++
T Consensus      1115 ltTHdmdea~~laD 1128 (2272)
T TIGR01257      1115 MSTHHMDEADLLGD 1128 (2272)
T ss_pred             EEECCHHHHHHhCC
Confidence            99999998877644

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.41  E-value=3.8e-06  Score=78.08  Aligned_cols=63  Identities=13%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.+++++..+.+.+..++-++|||++.   |....+.+...+. ...+..||++||+.+.+..+
T Consensus       167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~  233 (272)
T PRK14236        167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV  233 (272)
T ss_pred             ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhh
Confidence            347889999999999999999999999999   4444444444443 12357899999998876654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=8.4e-06  Score=75.85  Aligned_cols=177  Identities=15%  Similarity=0.246  Sum_probs=105.4

Q ss_pred             CCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      +++=|-++.+++|.+.+.-.         -+-..++-|.++||+|.|||-||++++++  ....|     +. +..+   
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Ir-vvgS---  219 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IR-VVGS---  219 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EE-eccH---
Confidence            55678899999998876541         23456889999999999999999999998  44444     33 2211   


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------------HHHHHHHhH--
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------------EVCKHLSKV--  169 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------------~~~~~l~~~--  169 (398)
                       ++.+..+   |           .+..-.+..+.-+-...+.+|.+|+++..                 ..+++|...  
T Consensus       220 -ElVqKYi---G-----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG  284 (406)
T COG1222         220 -ELVQKYI---G-----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG  284 (406)
T ss_pred             -HHHHHHh---c-----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence             1222221   1           12222233333344567999999999832                 222222221  


Q ss_pred             cCCCCCCEEEEEeCChHHHHHh----cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          170 LPRGYGERLIITSRNEKLTTEM----VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       170 l~~~~gs~IIiTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      |....+-+||..|...+++...    ...++.++++ |++.+.-.++|+-....-....+-    ..+.+++.|.|..=|
T Consensus       285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrkM~l~~dv----d~e~la~~~~g~sGA  359 (406)
T COG1222         285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRKMNLADDV----DLELLARLTEGFSGA  359 (406)
T ss_pred             CCCCCCeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhhccCccCc----CHHHHHHhcCCCchH
Confidence            1123467899888765544331    2337888995 776576777777544332222111    456677778887743

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.41  E-value=4.7e-06  Score=73.85  Aligned_cols=129  Identities=12%  Similarity=0.083  Sum_probs=70.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE----------------EecCCccc--H-HHHHHHHHHHcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV----------------CTMSGQKT--A-ESIVKRILKRLGV  121 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v----------------~~v~~~~~--~-~~~~~~il~~l~~  121 (398)
                      ..-.+++|+|++|+|||||++.+..-........+.+++                .++.+...  . ..+...+......
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  110 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC  110 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh
Confidence            345799999999999999999998762200011111111                11111110  0 0111222111111


Q ss_pred             CCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEE-EEeCChHHHHH
Q 015891          122 DDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLI-ITSRNEKLTTE  190 (398)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~II-iTTR~~~v~~~  190 (398)
                      . ........+.++.++..+.+.+..++-+++||++.   |....+.+...+.   ...+..+| +|+++.+.+..
T Consensus       111 ~-~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~  185 (202)
T cd03233         111 K-GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD  185 (202)
T ss_pred             c-cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence            0 11222347889999999999999999999999998   4444444444433   22245544 45665444443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.41  E-value=4.8e-06  Score=85.31  Aligned_cols=202  Identities=18%  Similarity=0.179  Sum_probs=121.1

Q ss_pred             CCCCCCCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           28 VPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        28 ~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      ..+-.++.++.+.|-|..-.+.+..       ....+.+.|.-|+|.|||||+.++...   ...-..+.|++--.++.+
T Consensus         9 ~sk~~~P~~~~~~v~R~rL~~~L~~-------~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dnd   78 (894)
T COG2909           9 PSKLVRPVRPDNYVVRPRLLDRLRR-------ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDND   78 (894)
T ss_pred             ccccCCCCCcccccccHHHHHHHhc-------CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCC
Confidence            3334445556778888766655543       346899999999999999999999763   223345899993345677


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCc--------CCCchHHHHHHHHHHHh--CCCcEEEecCCC---CHHHHHHHHhHcCCC-
Q 015891          108 AESIVKRILKRLGVDDGTTNSF--------EGQGLAFLDYVLQQQLI--GKRYLIVLDDFE---DMEVCKHLSKVLPRG-  173 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~---~~~~~~~l~~~l~~~-  173 (398)
                      +..+...++..++...+.....        ....+..+...+..-+.  .++.++||||..   +...-..+..++.+. 
T Consensus        79 p~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P  158 (894)
T COG2909          79 PARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP  158 (894)
T ss_pred             HHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC
Confidence            8888888888887433221110        01223333444444333  368999999987   554445555555533 


Q ss_pred             CCCEEEEEeCChHHHHH--hcCCCceEEcC----CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          174 YGERLIITSRNEKLTTE--MVGEENLHQLQ----PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~--~~~~~~~~~l~----~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      ++-++|||||.+.-+..  +.-.+..+++.    .++. |++..||....+..-      ....++.+.+...|-+-|+
T Consensus       159 ~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~-eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al  230 (894)
T COG2909         159 ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDT-EEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAAL  230 (894)
T ss_pred             CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCCh-HHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHH
Confidence            57899999998732111  01112233332    4666 556777766543211      1124556666666666554

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=4.6e-06  Score=76.54  Aligned_cols=65  Identities=11%  Similarity=0.127  Sum_probs=48.0

Q ss_pred             CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ....+.+++++..+.+.+..++-+++||++.   |......+...+. ...+..||++||+.+.+..++
T Consensus       145 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~  213 (251)
T PRK14270        145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVS  213 (251)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhc
Confidence            3458899999999999999999999999999   4444444443433 122478999999988766643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.41  E-value=9.2e-06  Score=85.74  Aligned_cols=154  Identities=17%  Similarity=0.175  Sum_probs=85.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC---CCCccc-cceEEEEecCCcccHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP---DVKTQF-VPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~~v~~v~~~~~~~~~~~  113 (398)
                      ++++||+.+++++.+.|..    ....-+.++|++|+|||++|+.+++..   .+...+ ...+|..  .    ..    
T Consensus       182 ~~~igr~~ei~~~~~~L~~----~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~--~----~~----  247 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCR----RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL--D----MG----  247 (731)
T ss_pred             CcccCcHHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe--c----HH----
Confidence            5799999999999998865    344557899999999999999998762   111111 2233322  1    11    


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------HHHHHHHhHcCCCCCCEEEEEe
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------EVCKHLSKVLPRGYGERLIITS  182 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~gs~IIiTT  182 (398)
                      .++.....        .....+.+...+...-..++.+|++||++..           +..+.|...+..+ .-++|-+|
T Consensus       248 ~l~a~~~~--------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaT  318 (731)
T TIGR02639       248 SLLAGTKY--------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGST  318 (731)
T ss_pred             HHhhhccc--------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEec
Confidence            11100000        0011122222233222346889999999822           3344555555433 23445444


Q ss_pred             CChHH------HHHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891          183 RNEKL------TTEMVGEENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       183 R~~~v------~~~~~~~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      ...+.      -..+......+++++++. ++...+++.
T Consensus       319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~-~~~~~il~~  356 (731)
T TIGR02639       319 TYEEYKNHFEKDRALSRRFQKIDVGEPSI-EETVKILKG  356 (731)
T ss_pred             CHHHHHHHhhhhHHHHHhCceEEeCCCCH-HHHHHHHHH
Confidence            43221      111112345789999988 667777764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.41  E-value=5.6e-07  Score=81.91  Aligned_cols=98  Identities=15%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc--ccHHHHHHHHHHHcCCCCCCCCCcC-CCchHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ--KTAESIVKRILKRLGVDDGTTNSFE-GQGLAFL  137 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~-~~~~~~~  137 (398)
                      ..-..++|+|++|+|||||++.+++..... +|+..+|+. +..+  .+..++++.+...+-......+... .......
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~-vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~   91 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVL-LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV   91 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEE-EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence            456789999999999999999999984333 789999988 5555  7888888888333211111111000 0001111


Q ss_pred             HHHHHHH-HhCCCcEEEecCCCCH
Q 015891          138 DYVLQQQ-LIGKRYLIVLDDFEDM  160 (398)
Q Consensus       138 ~~~l~~~-l~~k~~LlVLDdv~~~  160 (398)
                      ....... -.+++.++++|++...
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~r~  115 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSITRL  115 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHHHh
Confidence            1112211 2468999999999854

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.4e-06  Score=78.38  Aligned_cols=63  Identities=10%  Similarity=0.131  Sum_probs=47.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..+
T Consensus       145 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~  211 (250)
T PRK14240        145 LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRI  211 (250)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhh
Confidence            347899999999999999999999999998   4444444443332 12367899999998866654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.40  E-value=3.6e-06  Score=85.02  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCCC-C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891          111 IVKRILKRLGVDD-G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS  182 (398)
Q Consensus       111 ~~~~il~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT  182 (398)
                      ...++++.+++.. . .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.   ...++.||++|
T Consensus       380 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs  459 (490)
T PRK10938        380 LAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS  459 (490)
T ss_pred             HHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            3456777788764 2 2333458999999999999999999999999999   4444444444443   22235699999


Q ss_pred             CChHHHHH
Q 015891          183 RNEKLTTE  190 (398)
Q Consensus       183 R~~~v~~~  190 (398)
                      |+.+.+..
T Consensus       460 Hd~~~~~~  467 (490)
T PRK10938        460 HHAEDAPA  467 (490)
T ss_pred             cchhhhhh
Confidence            99887754

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.40  E-value=4.5e-06  Score=85.44  Aligned_cols=138  Identities=16%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc-----------eEEEEecCCcc-------------cHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP-----------RIWVCTMSGQK-------------TAESIVK  113 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-----------~~~v~~v~~~~-------------~~~~~~~  113 (398)
                      ..-..++|+|++|+|||||++.+..-... ..  .++.           .-.+.++.++.             ...+...
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~  426 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVE  426 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHH
Confidence            35678999999999999999999754110 00  0000           00111122211             1123445


Q ss_pred             HHHHHcCCCCCCC------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          114 RILKRLGVDDGTT------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       114 ~il~~l~~~~~~~------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      +.++.+++.....      .....+++++++..+++.+..++-+++|||+.   |.+..+.+...+.   ...+.++|++
T Consensus       427 ~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i  506 (547)
T PRK10522        427 KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI  506 (547)
T ss_pred             HHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            5666666553211      12357899999999999999999999999999   4444444333321   1236778888


Q ss_pred             eCChHHHHHhcCCCceEEcC
Q 015891          182 SRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       182 TR~~~v~~~~~~~~~~~~l~  201 (398)
                      ||+.+....   .++++.++
T Consensus       507 tH~~~~~~~---~d~i~~l~  523 (547)
T PRK10522        507 SHDDHYFIH---ADRLLEMR  523 (547)
T ss_pred             EechHHHHh---CCEEEEEE
Confidence            888766554   34555553

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.39  E-value=3.9e-06  Score=88.48  Aligned_cols=134  Identities=13%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE-----------------EecCCc-----------------c
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV-----------------CTMSGQ-----------------K  106 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v-----------------~~v~~~-----------------~  106 (398)
                      ..-..++|+|++|+|||||++.+..-...   ..+.+.+                 .+++++                 .
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~  581 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLYQP---TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD  581 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC
Confidence            45678999999999999999999664111   1111111                 111111                 1


Q ss_pred             cHHHHHHHHHHHcCCCC-----------C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891          107 TAESIVKRILKRLGVDD-----------G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP  171 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~-----------~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~  171 (398)
                      ...+.+.+.++..+..+           . .......+++++++..+++.+-.++-++||||+.   |.+..+.+.. ..
T Consensus       582 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~  660 (711)
T TIGR00958       582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR  660 (711)
T ss_pred             CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh
Confidence            11223334444433221           1 1112347889999999999999999999999999   4455555554 33


Q ss_pred             CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          172 RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..++.++|++||+.+....   .++++.++
T Consensus       661 ~~~~~TvIiItHrl~~i~~---aD~IivL~  687 (711)
T TIGR00958       661 SRASRTVLLIAHRLSTVER---ADQILVLK  687 (711)
T ss_pred             ccCCCeEEEEeccHHHHHh---CCEEEEEE
Confidence            3457788999998876654   35566663

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.39  E-value=5.8e-06  Score=76.46  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=50.4

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..++  ++++.+
T Consensus       150 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~--d~v~~l  223 (264)
T PRK14243        150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVS--DMTAFF  223 (264)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC--CEEEEE
Confidence            347899999999999999999999999998   4443334433332 122468999999988776653  344444

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.39  E-value=3.5e-06  Score=89.06  Aligned_cols=68  Identities=19%  Similarity=0.228  Sum_probs=51.0

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..+++++++..+++.+-.++-+++|||+.   |....+.+...+.. .+.++|++||.......+   ++++.++
T Consensus       615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~i~~~---D~Iivl~  685 (710)
T TIGR03796       615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLSTIRDC---DEIIVLE  685 (710)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhC---CEEEEEe
Confidence            47899999999999999999999999999   44444555545543 467888888887766543   5566663

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=6.4e-06  Score=76.04  Aligned_cols=63  Identities=8%  Similarity=0.097  Sum_probs=47.3

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+.+.+..++
T Consensus       149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~  215 (261)
T PRK14263        149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVA  215 (261)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence            47889999999999999999999999998   4443333433333 123678999999998766543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.39  E-value=5.9e-06  Score=76.09  Aligned_cols=68  Identities=13%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+.+||++||+......   .++++.+
T Consensus       156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~---~dri~~l  227 (257)
T cd03288         156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD---ADLVLVL  227 (257)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh---CCEEEEE
Confidence            47889999999999999999999999998   4444444444433 2347899999999887764   2444444

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.38  E-value=1.2e-05  Score=79.03  Aligned_cols=157  Identities=15%  Similarity=0.234  Sum_probs=88.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCcccc--ceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV--PRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ...+.|+|++|+|||+|++++++.  +.....  .++++.       ...+...+...+...          ..+    .
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~-------~~~~~~~~~~~~~~~----------~~~----~  192 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS-------SEKFTNDFVNALRNN----------KME----E  192 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE-------HHHHHHHHHHHHHcC----------CHH----H
Confidence            456899999999999999999887  333322  234443       223333444443211          111    2


Q ss_pred             HHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCC-hHHHHHh----c---CCCceEEcCCCCCh
Q 015891          141 LQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRN-EKLTTEM----V---GEENLHQLQPLSDQ  206 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~-~~v~~~~----~---~~~~~~~l~~L~~~  206 (398)
                      +...+. +.-+|+|||++..    ...+.+...+.  ...+..+|+||.. ......+    .   .....+.+++.+. 
T Consensus       193 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~-  270 (405)
T TIGR00362       193 FKEKYR-SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL-  270 (405)
T ss_pred             HHHHHH-hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH-
Confidence            333333 2569999999832    22233333332  2345667777764 2222111    1   1234688888888 


Q ss_pred             hHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          207 ESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       207 e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      +....++.+.+...+...+   .+....|++.+.|....+.
T Consensus       271 ~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~  308 (405)
T TIGR00362       271 ETRLAILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE  308 (405)
T ss_pred             HHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence            6677777776554444333   3366777788877766543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.38  E-value=2.9e-06  Score=87.70  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..++++.++-.+++.+-.++-++||||+.   |.+..+.+...+. ..++.++|++||+......+   ++++.+
T Consensus       471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~---D~ii~l  542 (588)
T PRK13657        471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNA---DRILVF  542 (588)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhC---CEEEEE
Confidence            37889999999999999999999999999   4455555544443 23468899999988776543   455655

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.38  E-value=3.3e-06  Score=87.29  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=51.1

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+++++++-.+++++-.++-++||||+.   |.+..+.+...+. ..++.++|++||..+....   .++++.++
T Consensus       484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~---aD~Iivl~  557 (588)
T PRK11174        484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ---WDQIWVMQ  557 (588)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh---CCEEEEEe
Confidence            348999999999999999999999999999   4444444544443 2356778888887766554   35666663

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.37  E-value=2e-06  Score=77.35  Aligned_cols=132  Identities=17%  Similarity=0.187  Sum_probs=83.7

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcCCC------------------------CCcc----ccc-eEEEEe-cCCc---
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHKPD------------------------VKTQ----FVP-RIWVCT-MSGQ---  105 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~------------------------~~~~----F~~-~~~v~~-v~~~---  105 (398)
                      ..+..++.+|+|.+|+|||||.+.+..-.+                        .+.+    |.. +.|-++ |..+   
T Consensus        20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y   99 (352)
T COG4148          20 TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY   99 (352)
T ss_pred             cCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence            345678999999999999999999953210                        0111    110 111110 1111   


Q ss_pred             ---ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCC
Q 015891          106 ---KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGY  174 (398)
Q Consensus       106 ---~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~  174 (398)
                         .....-+..+..-||+.+- ...+...+++++++..+.++|-.++-|+++|++-..       +.+-++... ...-
T Consensus       100 G~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL-~~e~  178 (352)
T COG4148         100 GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL-RDEI  178 (352)
T ss_pred             hhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH-HHhc
Confidence               2234456778888887663 233455899999999999999999999999998722       222233222 2334


Q ss_pred             CCEEEEEeCChHHHHHh
Q 015891          175 GERLIITSRNEKLTTEM  191 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~  191 (398)
                      .--|+..||+.+-...+
T Consensus       179 ~IPIlYVSHS~~Ev~RL  195 (352)
T COG4148         179 NIPILYVSHSLDEVLRL  195 (352)
T ss_pred             CCCEEEEecCHHHHHhh
Confidence            56799999987654444

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.37  E-value=3.1e-06  Score=86.32  Aligned_cols=121  Identities=16%  Similarity=0.215  Sum_probs=75.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCcc-----------------c
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQK-----------------T  107 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~~-----------------~  107 (398)
                      +.-..++|+|++|+|||||++.+..-.   ....+.+.                +.++.++.                 .
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~  435 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLL---DPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA  435 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence            456789999999999999999997541   11111111                11122211                 1


Q ss_pred             HHHHHHHHHHHcCCCC---------C---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          108 AESIVKRILKRLGVDD---------G---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~---------~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                      ..+-+.+.++..+..+         +   .......+++++++-.+++.+-.++-++||||+.   |.+..+.+...+. 
T Consensus       436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1222334444433221         0   0112347899999999999999999999999999   4455555554543 


Q ss_pred             CCCCCEEEEEeCC
Q 015891          172 RGYGERLIITSRN  184 (398)
Q Consensus       172 ~~~gs~IIiTTR~  184 (398)
                      ..++.++|++||.
T Consensus       516 ~~~~~TvIiItHr  528 (529)
T TIGR02868       516 ALSGKTVVVITHH  528 (529)
T ss_pred             hcCCCEEEEEecC
Confidence            3457788888875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.37  E-value=6.2e-06  Score=76.13  Aligned_cols=167  Identities=13%  Similarity=0.146  Sum_probs=84.2

Q ss_pred             CCcccchhhHHHHHHHHhc---------c--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           38 ANVHGFANEELHLQKLLSN---------R--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..++|.+...+.|.+....         .  ...+....+.++|++|+||||+|+.+++...-........++. ++.  
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--   82 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--   82 (261)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence            3578988887777654322         0  1223456788999999999999999976410000001111222 211  


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------HHHHHHHhHcCCCCC-
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------EVCKHLSKVLPRGYG-  175 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~g-  175 (398)
                        ..+....   ++           .........+.+.   ...+|++||++..          +..+.+...+....+ 
T Consensus        83 --~~l~~~~---~g-----------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~  143 (261)
T TIGR02881        83 --ADLVGEY---IG-----------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE  143 (261)
T ss_pred             --HHhhhhh---cc-----------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence              1111100   00           1112222223222   2459999999842          233444444433333 


Q ss_pred             CEEEEEeCChHH---HH---HhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHH
Q 015891          176 ERLIITSRNEKL---TT---EMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQ  227 (398)
Q Consensus       176 s~IIiTTR~~~v---~~---~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~  227 (398)
                      ..+|+++.....   ..   .+.. ....+.+++++. ++...++.+.+.......++.
T Consensus       144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~-~el~~Il~~~~~~~~~~l~~~  201 (261)
T TIGR02881       144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV-EELMEIAERMVKEREYKLTEE  201 (261)
T ss_pred             EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH-HHHHHHHHHHHHHcCCccCHH
Confidence            345555543221   10   1111 135688999998 667888877665444334343

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=3e-06  Score=83.76  Aligned_cols=138  Identities=15%  Similarity=0.187  Sum_probs=87.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC-CC----------------ccccceEEEEecC--------------CcccHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-VK----------------TQFVPRIWVCTMS--------------GQKTAE  109 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~----------------~~F~~~~~v~~v~--------------~~~~~~  109 (398)
                      ..-..++|+|.+|+|||||+..+..-.. ..                ..+....|+..-+              ......
T Consensus       345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~  424 (559)
T COG4988         345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD  424 (559)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence            4567899999999999999999965311 00                1122345654111              011123


Q ss_pred             HHHHHHHHHcCCCCC-----------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCC
Q 015891          110 SIVKRILKRLGVDDG-----------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGY  174 (398)
Q Consensus       110 ~~~~~il~~l~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~  174 (398)
                      +.+.+.+++.++.+-           .......+.++.++..+++.+-+++-+++||+++   |.+..+.+...+. ...
T Consensus       425 e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~  504 (559)
T COG4988         425 EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK  504 (559)
T ss_pred             HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh
Confidence            334444444333221           0111227889999999999999999999999999   5555555554443 455


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      +.++|+.||....+..+   ++++.++
T Consensus       505 ~ktvl~itHrl~~~~~~---D~I~vld  528 (559)
T COG4988         505 QKTVLVITHRLEDAADA---DRIVVLD  528 (559)
T ss_pred             CCeEEEEEcChHHHhcC---CEEEEec
Confidence            68899999988887765   5566554

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.37  E-value=7.9e-06  Score=69.83  Aligned_cols=129  Identities=18%  Similarity=0.204  Sum_probs=84.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC-----C-------Cc-------cccc---eEEEEecCCc------------cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-----V-------KT-------QFVP---RIWVCTMSGQ------------KT  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-----~-------~~-------~F~~---~~~v~~v~~~------------~~  107 (398)
                      .-..|++.|++|+|||||.+.++.-..     +       ..       -|..   .-|.+ +-.+            ..
T Consensus        30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~-~~dNvafgL~l~Gi~k~~  108 (259)
T COG4525          30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLN-VIDNVAFGLQLRGIEKAQ  108 (259)
T ss_pred             CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhH-HHHHHHHHHHhcCCCHHH
Confidence            345788999999999999999864210     0       00       0111   12433 2211            12


Q ss_pred             HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEEE
Q 015891          108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLII  180 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~IIi  180 (398)
                      ...+..+++...|+.... ......+++.+++.-++++|.-.+-+++||++...      +..+.+.--++...|..+++
T Consensus       109 R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll  188 (259)
T COG4525         109 RREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL  188 (259)
T ss_pred             HHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            234556677777877643 33455899999999999999999999999999832      33333332334455777899


Q ss_pred             EeCChHHHHHh
Q 015891          181 TSRNEKLTTEM  191 (398)
Q Consensus       181 TTR~~~v~~~~  191 (398)
                      +||+-+-+..+
T Consensus       189 iTH~ieEAlfl  199 (259)
T COG4525         189 ITHDIEEALFL  199 (259)
T ss_pred             EeccHHHHHhh
Confidence            99998766654

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.37  E-value=8.4e-06  Score=83.38  Aligned_cols=193  Identities=13%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      +++||.+...+.|...+..   ..-...+.++|+.|+||||+|+.+++...-......        ..+..-.....+..
T Consensus        16 ~~iiGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~--------~~c~~c~~c~~i~~   84 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDT---GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA--------EPCNVCPPCVEITE   84 (576)
T ss_pred             HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC--------CCCCccHHHHHHhc
Confidence            6789999999999999864   223466789999999999999999876211111100        00000000001100


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEe-CChHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITS-RNEKLT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTT-R~~~v~  188 (398)
                      .-..+.......+..+.+..+. +...+     ..+.-++|+|+++  +....+.|...+.. ...+.+|++| ....+.
T Consensus        85 g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~  163 (576)
T PRK14965         85 GRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP  163 (576)
T ss_pred             CCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence            0000000000000112222222 22222     2345689999998  44555666666642 2355555544 445566


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      ..+......+++.+++. +.....+...+...+...++   +.+..|++.++|-...+
T Consensus       164 ~tI~SRc~~~~f~~l~~-~~i~~~L~~i~~~egi~i~~---~al~~la~~a~G~lr~a  217 (576)
T PRK14965        164 ITILSRCQRFDFRRIPL-QKIVDRLRYIADQEGISISD---AALALVARKGDGSMRDS  217 (576)
T ss_pred             HHHHHhhhhhhcCCCCH-HHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHH
Confidence            55545567889999998 55655565544443333222   25667888888866543

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.37  E-value=8.1e-05  Score=73.73  Aligned_cols=153  Identities=17%  Similarity=0.226  Sum_probs=85.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~  142 (398)
                      ...+.|+|+.|+|||+|++++++.  +......++++.       ...+...+...+...          .    ...++
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~-------~~~f~~~~~~~l~~~----------~----~~~f~  197 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR-------SELFTEHLVSAIRSG----------E----MQRFR  197 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee-------HHHHHHHHHHHHhcc----------h----HHHHH
Confidence            356889999999999999999987  322222344444       223333444433211          1    11233


Q ss_pred             HHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCC-hH--------HHHHhcCCCceEEcCCCCChh
Q 015891          143 QQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRN-EK--------LTTEMVGEENLHQLQPLSDQE  207 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~-~~--------v~~~~~~~~~~~~l~~L~~~e  207 (398)
                      ..+ ...-+|++||+...    ...+.+...+.  ...|..||+||.. ..        +...+ .....+++++++. +
T Consensus       198 ~~~-~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~-~~Gl~~~l~~pd~-e  274 (445)
T PRK12422        198 QFY-RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRF-EWGIAIPLHPLTK-E  274 (445)
T ss_pred             HHc-ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhh-cCCeEEecCCCCH-H
Confidence            333 34679999998732    22233333332  2245678888854 22        12222 2246889999987 6


Q ss_pred             HHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          208 SCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                      ....++.+.....+...++   +...-|+..+.+.-.
T Consensus       275 ~r~~iL~~k~~~~~~~l~~---evl~~la~~~~~dir  308 (445)
T PRK12422        275 GLRSFLERKAEALSIRIEE---TALDFLIEALSSNVK  308 (445)
T ss_pred             HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHH
Confidence            6777777654433333333   245556666665443

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.36  E-value=3.9e-06  Score=81.16  Aligned_cols=132  Identities=17%  Similarity=0.198  Sum_probs=85.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC----------------------------CCccccceEEEEecC------Cc--
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD----------------------------VKTQFVPRIWVCTMS------GQ--  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~----------------------------~~~~F~~~~~v~~v~------~~--  105 (398)
                      .-.+-+|.|.+|.|||||++.+|.-.+                            +.+||..+--++ +.      ..  
T Consensus        29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT-V~ENiiLg~e~~  107 (501)
T COG3845          29 KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT-VAENIILGLEPS  107 (501)
T ss_pred             CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc-hhhhhhhcCccc
Confidence            345789999999999999999975310                            112332211111 11      11  


Q ss_pred             -------ccHHHHHHHHHHHcCCCCCCCCC-cCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC--C
Q 015891          106 -------KTAESIVKRILKRLGVDDGTTNS-FEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP--R  172 (398)
Q Consensus       106 -------~~~~~~~~~il~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~--~  172 (398)
                             ....+-+..+.++.|++-+.... .+.+-+++++..+-+.|-...-+||||+++.   +...+.|...+.  .
T Consensus       108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~  187 (501)
T COG3845         108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA  187 (501)
T ss_pred             cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                   12345677788888887654332 3367788889999999999999999999993   444444444443  3


Q ss_pred             CCCCEEEEEeCChHHHHHhcCC
Q 015891          173 GYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ..|..||++||--+-...+++.
T Consensus       188 ~~G~tIi~ITHKL~Ev~~iaDr  209 (501)
T COG3845         188 AEGKTIIFITHKLKEVMAIADR  209 (501)
T ss_pred             HCCCEEEEEeccHHHHHHhhCe
Confidence            5688888888875544444343

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.36  E-value=4e-06  Score=95.56  Aligned_cols=132  Identities=19%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc----------eEEEEecCCc------cc----------------
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP----------RIWVCTMSGQ------KT----------------  107 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~----------~~~v~~v~~~------~~----------------  107 (398)
                      -.+++|.|++|+|||||++.+........   .+.+          ...+.++.+.      .+                
T Consensus      1965 GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~ 2044 (2272)
T TIGR01257      1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPA 2044 (2272)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCH
Confidence            45899999999999999999976521100   0000          0001111111      01                


Q ss_pred             --HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEE
Q 015891          108 --AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLI  179 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~II  179 (398)
                        ..+....+++.+++.... ......+++++++..++.++..++-+++||++.   |....+.+...+.  ...|..||
T Consensus      2045 ~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TII 2124 (2272)
T TIGR01257      2045 EEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVV 2124 (2272)
T ss_pred             HHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence              112234566677775432 223348999999999999999999999999999   4444333333332  23478999


Q ss_pred             EEeCChHHHHHhcCC
Q 015891          180 ITSRNEKLTTEMVGE  194 (398)
Q Consensus       180 iTTR~~~v~~~~~~~  194 (398)
                      +|||+.+.+..+++.
T Consensus      2125 LtTH~mee~e~lcDr 2139 (2272)
T TIGR01257      2125 LTSHSMEECEALCTR 2139 (2272)
T ss_pred             EEeCCHHHHHHhCCE
Confidence            999999888776544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=6.2e-06  Score=76.32  Aligned_cols=65  Identities=11%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ...+.++.++..+.+.+..++-+++||++.   |....+.+...+. ...+..||++||+.+.+..+++
T Consensus       160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d  228 (265)
T PRK14252        160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSD  228 (265)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCC
Confidence            347889999999999999999999999998   4444444444443 1235789999999987766433

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.36  E-value=2.2e-06  Score=77.36  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=57.9

Q ss_pred             HHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCC--cEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          114 RILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKR--YLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       114 ~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~--~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      +++..+++..  ........+.+++++..+.+.+...+  -++++|++.   |....+.+...+.  ...|..||++||+
T Consensus       119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~  198 (226)
T cd03270         119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD  198 (226)
T ss_pred             HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            3455566643  23344558899999999999998876  699999998   4443444433332  2347789999999


Q ss_pred             hHHHHHhcCCCceEEcCC
Q 015891          185 EKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l~~  202 (398)
                      .+.+. +  .++++.+.+
T Consensus       199 ~~~~~-~--~d~i~~l~~  213 (226)
T cd03270         199 EDTIR-A--ADHVIDIGP  213 (226)
T ss_pred             HHHHH-h--CCEEEEeCC
Confidence            98764 3  356666643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.36  E-value=6.9e-06  Score=83.80  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..+++++++..+.+.+-.++-+++|||+.   |.+..+.+...+. ...+.++|++||+......
T Consensus       458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~  522 (529)
T TIGR02857       458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER  522 (529)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence            47899999999999999999999999998   4444444444443 2357888999998877654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.35  E-value=4.4e-06  Score=88.02  Aligned_cols=68  Identities=15%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++-.+++.+-.++-++||||+.   |.+..+.+...+. ..++.++|++||+.+....+   ++++.+
T Consensus       601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~---D~iivl  672 (694)
T TIGR03375       601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV---DRIIVM  672 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC---CEEEEE
Confidence            47899999999999999999999999998   4444444444443 23467888888888766543   555655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.35  E-value=1.9e-05  Score=73.74  Aligned_cols=166  Identities=12%  Similarity=0.169  Sum_probs=85.4

Q ss_pred             CCcccchhhHHHHHHHHhc---------cC--CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           38 ANVHGFANEELHLQKLLSN---------RG--TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~--~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..++|.+...++|.++...         .+  ......-+.++|++|+||||+|+.++.............|+. ++.  
T Consensus        22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-v~~--   98 (284)
T TIGR02880        22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-VTR--   98 (284)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-ecH--
Confidence            3588988887777664321         00  011233688999999999999987765411111111112333 331  


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------HHHHHHHhHcC-CCC
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------EVCKHLSKVLP-RGY  174 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~~~~l~~~l~-~~~  174 (398)
                        ..+...   .++.           ........+.+   ...-+|+|||+...           +..+.|...+. ...
T Consensus        99 --~~l~~~---~~g~-----------~~~~~~~~~~~---a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~  159 (284)
T TIGR02880        99 --DDLVGQ---YIGH-----------TAPKTKEILKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRD  159 (284)
T ss_pred             --HHHhHh---hccc-----------chHHHHHHHHH---ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCC
Confidence              111111   1111           01111222222   23479999999722           23344444554 334


Q ss_pred             CCEEEEEeCChHHHHHh-------cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchH
Q 015891          175 GERLIITSRNEKLTTEM-------VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS  226 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~-------~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~  226 (398)
                      +.+||+++.....-...       ......+++++++. ++...++.+.+........+
T Consensus       160 ~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~-edl~~I~~~~l~~~~~~l~~  217 (284)
T TIGR02880       160 DLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE-AELLVIAGLMLKEQQYRFSA  217 (284)
T ss_pred             CEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH-HHHHHHHHHHHHHhccccCH
Confidence            55666666533221111       01146789999997 77888888766544433333

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1.1e-05  Score=74.81  Aligned_cols=64  Identities=13%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |......+...+. ...+..||++||+.+.+..++
T Consensus       166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~  233 (271)
T PRK14238        166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARIS  233 (271)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhC
Confidence            347889999999999999999999999998   4444444443332 122578999999998776643

>CHL00181 cbbX CbbX; Provisional

Probab=98.34  E-value=2.2e-05  Score=73.31  Aligned_cols=166  Identities=14%  Similarity=0.171  Sum_probs=86.0

Q ss_pred             CCcccchhhHHHHHHHHhc---------cC--CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           38 ANVHGFANEELHLQKLLSN---------RG--TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~--~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      +.++|.+...++|.++...         .+  .......+.++|++|+||||+|+.+++.......-...-|+. ++   
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~---   98 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VT---   98 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ec---
Confidence            3588988777766655321         00  112234588999999999999999976410001111112333 33   


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------HHHHHHHhHcC-CCC
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------EVCKHLSKVLP-RGY  174 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~~~~l~~~l~-~~~  174 (398)
                       ...+...+   .+..           .......+.+   ...-+|++|++...           +..+.|...+. ...
T Consensus        99 -~~~l~~~~---~g~~-----------~~~~~~~l~~---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~  160 (287)
T CHL00181         99 -RDDLVGQY---IGHT-----------APKTKEVLKK---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRD  160 (287)
T ss_pred             -HHHHHHHH---hccc-----------hHHHHHHHHH---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCC
Confidence             11121111   1110           1111222222   23469999999632           33444444443 334


Q ss_pred             CCEEEEEeCChHHHHH------h-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchH
Q 015891          175 GERLIITSRNEKLTTE------M-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS  226 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~------~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~  226 (398)
                      +.+||+++........      + ......+++++++. ++...++.+.+........+
T Consensus       161 ~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~-~el~~I~~~~l~~~~~~l~~  218 (287)
T CHL00181        161 DLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP-EELLQIAKIMLEEQQYQLTP  218 (287)
T ss_pred             CEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH-HHHHHHHHHHHHHhcCCCCh
Confidence            5667777754332111      1 12256799999998 66777777765443333333

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.34  E-value=6.2e-06  Score=87.10  Aligned_cols=68  Identities=15%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++..+++++-.++-+++||+++   |.+..+.+...+....+.++|++||+......   .++++.+
T Consensus       611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~---~D~i~~l  681 (708)
T TIGR01193       611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ---SDKIIVL  681 (708)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc---CCEEEEE
Confidence            47899999999999999999999999999   44444444444432246788888888876654   3556655

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.33  E-value=1.4e-05  Score=75.87  Aligned_cols=135  Identities=17%  Similarity=0.258  Sum_probs=79.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+...+.+..++..   ..-...+.++|++|+||||+|+.+++.  ....   ...+. .+. .. ...++..+.
T Consensus        21 ~~~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~-~~~-~~-~~~i~~~l~   89 (316)
T PHA02544         21 DECILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVN-GSD-CR-IDFVRNRLT   89 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEec-cCc-cc-HHHHHHHHH
Confidence            6789999999999999864   234567777999999999999999886  3222   22333 222 11 111111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH--HhCCCcEEEecCCCCH---HHHHHHHhHcC-CCCCCEEEEEeCChH-HHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ--LIGKRYLIVLDDFEDM---EVCKHLSKVLP-RGYGERLIITSRNEK-LTTE  190 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVLDdv~~~---~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~  190 (398)
                      .+                      ...  +...+.++|+||++..   +....+...+. ...++++|+||.... +...
T Consensus        90 ~~----------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~  147 (316)
T PHA02544         90 RF----------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP  147 (316)
T ss_pred             HH----------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence            10                      000  1134678999999843   34445554444 345678888887543 2233


Q ss_pred             hcCCCceEEcCCCCC
Q 015891          191 MVGEENLHQLQPLSD  205 (398)
Q Consensus       191 ~~~~~~~~~l~~L~~  205 (398)
                      +......+.++..+.
T Consensus       148 l~sR~~~i~~~~p~~  162 (316)
T PHA02544        148 LRSRCRVIDFGVPTK  162 (316)
T ss_pred             HHhhceEEEeCCCCH
Confidence            333345677766665

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.33  E-value=2.4e-06  Score=83.25  Aligned_cols=132  Identities=17%  Similarity=0.182  Sum_probs=89.2

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcCCCC---------Ccccc---c--------eEEEE-e---cCCcccHHHHHHH
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV---------KTQFV---P--------RIWVC-T---MSGQKTAESIVKR  114 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~---------~~~F~---~--------~~~v~-~---v~~~~~~~~~~~~  114 (398)
                      .-+.-..|+++||+|+|||||.+.++.+..-         ...|.   -        ..|.. +   .-......+..+.
T Consensus       412 gid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~  491 (614)
T KOG0927|consen  412 GIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRS  491 (614)
T ss_pred             ccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHH
Confidence            3355678999999999999999999766210         01111   0        00000 0   0011244567788


Q ss_pred             HHHHcCCCCCCC--CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891          115 ILKRLGVDDGTT--NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTT  189 (398)
Q Consensus       115 il~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~  189 (398)
                      ++..+|+.....  +-...+.+++.+..+++.+-..+-|||||++.   |.+..+.+...+..-+| .+|++|||..+..
T Consensus       492 ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~G-gvv~vSHDfrlI~  570 (614)
T KOG0927|consen  492 ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPG-GVVLVSHDFRLIS  570 (614)
T ss_pred             HHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCC-ceeeeechhhHHH
Confidence            999999885432  22237888888888999999999999999999   45777777777764444 4888899977666


Q ss_pred             Hh
Q 015891          190 EM  191 (398)
Q Consensus       190 ~~  191 (398)
                      .+
T Consensus       571 qV  572 (614)
T KOG0927|consen  571 QV  572 (614)
T ss_pred             HH
Confidence            54

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=8.4e-06  Score=74.75  Aligned_cols=63  Identities=11%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+.+++++..+.+.+..++-+++||++.   |......+...+. ...+..||++||+......+
T Consensus       145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~  211 (250)
T PRK14266        145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRV  211 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhh
Confidence            347889999999999999999999999999   4444444444443 12367899999998776664

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.31  E-value=1.3e-05  Score=81.94  Aligned_cols=69  Identities=20%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-C-CCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-R-GYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~-~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++.+-.++-++||||+.   |.+..+.+...+. . ..+.++|++||+......   .++++.+
T Consensus       453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~---~d~i~~l  526 (544)
T TIGR01842       453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC---VDKILVL  526 (544)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh---CCEEEEE
Confidence            347899999999999999999999999999   4444444544443 2 246789999998876544   3455655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.31  E-value=9.5e-06  Score=83.93  Aligned_cols=137  Identities=15%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccce-----------EEEEecCCcc----------------cHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPR-----------IWVCTMSGQK----------------TAES  110 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~-----------~~v~~v~~~~----------------~~~~  110 (398)
                      ..-..++|+|++|+|||||++.+..-.....   .++..           -.+.++.++.                ....
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~  444 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEE  444 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHH
Confidence            4567899999999999999999965411100   01110           0011112210                0112


Q ss_pred             HHHHHHHHcCCCC-----------C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCC
Q 015891          111 IVKRILKRLGVDD-----------G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGY  174 (398)
Q Consensus       111 ~~~~il~~l~~~~-----------~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~  174 (398)
                      -+.+.++..++..           . .......++++.++-.+++.+-.++-+++||++.   |.+..+.+...+. ...
T Consensus       445 ~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~  524 (592)
T PRK10790        445 QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE  524 (592)
T ss_pred             HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC
Confidence            2334444443221           1 0112347889999999999999999999999999   4454445544443 234


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ++++|++||+......+   ++++.+
T Consensus       525 ~~tvIivtHr~~~l~~~---D~ii~l  547 (592)
T PRK10790        525 HTTLVVIAHRLSTIVEA---DTILVL  547 (592)
T ss_pred             CCEEEEEecchHHHHhC---CEEEEE
Confidence            67888888888766653   455555

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.31  E-value=5.5e-06  Score=88.26  Aligned_cols=152  Identities=16%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc------ccceEEEEecCCcccHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ------FVPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~~v~~v~~~~~~~~~  111 (398)
                      ++++||+.++.++.+.|..    ....-+.|+|++|+||||+|+.+++.  +...      ....+|..+++.-..    
T Consensus       187 d~~iGr~~ei~~~i~~l~r----~~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l~a----  256 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLR----RRQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLLQA----  256 (852)
T ss_pred             CcccCCHHHHHHHHHHHhc----CCcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhhhc----
Confidence            6799999999999998865    34445679999999999999999876  2211      112223221221000    


Q ss_pred             HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCCCH----------HHHHHHHhHcCCCCCCEEEE
Q 015891          112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFEDM----------EVCKHLSKVLPRGYGERLII  180 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~gs~IIi  180 (398)
                              +..      ....-.+++...+..... .++.+|++|+++..          +....|.+.+..+ .-++|-
T Consensus       257 --------g~~------~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~Ig  321 (852)
T TIGR03345       257 --------GAS------VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIA  321 (852)
T ss_pred             --------ccc------cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEE
Confidence                    000      000111222223333222 46899999999843          2222444444333 355666


Q ss_pred             EeCChHHH------HHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891          181 TSRNEKLT------TEMVGEENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       181 TTR~~~v~------~~~~~~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      +|...+.-      ..+......+.+++++. ++...+++.
T Consensus       322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~-~~~~~iL~~  361 (852)
T TIGR03345       322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDE-ETAIRMLRG  361 (852)
T ss_pred             ecCHHHHhhhhhccHHHHHhCeEEEeCCCCH-HHHHHHHHH
Confidence            65543221      11122346899999998 556666543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.8e-05  Score=81.29  Aligned_cols=196  Identities=13%  Similarity=0.143  Sum_probs=106.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+...+.|...+..   ..-...+.++|+.|+||||+|+.+.....-...-..  .-. +....+...    +-.
T Consensus        17 ~~viGq~~~~~~L~~~i~~---~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~--~~~-Cg~C~sC~~----~~~   86 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIAT---NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD--GEA-CNECESCVA----FNE   86 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC--CCC-CCcchHHHH----Hhc
Confidence            6789999999999999864   234566899999999999999998765210000000  000 000000000    000


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEEE-EeCChHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLII-TSRNEKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~IIi-TTR~~~v~~  189 (398)
                      .-..+.......+....+..+..+...    +.+++-++|+|+++  +....+.|...+..- .++.+|+ |+....+..
T Consensus        87 ~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~  166 (614)
T PRK14971         87 QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILP  166 (614)
T ss_pred             CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence            000000000000011122222222111    12346699999998  445566676676532 3455555 445555665


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+.....++++.+++. ++....+.+.+...+....+   +.+..|+..++|-...+.
T Consensus       167 tI~SRc~iv~f~~ls~-~ei~~~L~~ia~~egi~i~~---~al~~La~~s~gdlr~al  220 (614)
T PRK14971        167 TILSRCQIFDFNRIQV-ADIVNHLQYVASKEGITAEP---EALNVIAQKADGGMRDAL  220 (614)
T ss_pred             HHHhhhheeecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            5556678899999999 55666666655443333222   256778888888776543

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.30  E-value=4.1e-07  Score=77.86  Aligned_cols=85  Identities=16%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHcCCCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVLPRGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l~~~~gs~IIiTTR~  184 (398)
                      +..++..+.+..-. .+....+++++.+..+++.|...|.+++||++.   |+   ...+.+...+. ..|--|+||-|+
T Consensus       120 l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHN  198 (243)
T COG1137         120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHN  198 (243)
T ss_pred             HHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEcccc
Confidence            45777777766532 333458999999999999999999999999998   44   33334433443 346679999998


Q ss_pred             hHHHHHhcCCCce
Q 015891          185 EKLTTEMVGEENL  197 (398)
Q Consensus       185 ~~v~~~~~~~~~~  197 (398)
                      -.-.-.+++...+
T Consensus       199 VREtL~i~dRaYI  211 (243)
T COG1137         199 VRETLDICDRAYI  211 (243)
T ss_pred             HHHHHhhhheEEE
Confidence            6544444343333

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.30  E-value=6.7e-06  Score=86.55  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++-.+++++-.++-+++|||+.   |....+.+...+... +.++|++||.......   .++++.+
T Consensus       588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiItHr~~~i~~---~D~Iivl  657 (686)
T TIGR03797       588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL-KVTRIVIAHRLSTIRN---ADRIYVL  657 (686)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEEecChHHHHc---CCEEEEE
Confidence            47899999999999999999999999999   444444554444322 4678888887766554   3555655

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.29  E-value=2.2e-05  Score=79.78  Aligned_cols=195  Identities=14%  Similarity=0.111  Sum_probs=107.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .+++|-+..++.|..++..   ..-...+.++|+.|+||||+|+.+++...-.......   . +..-.+.    ..+..
T Consensus        16 ~diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~---p-C~~C~~C----~~i~~   84 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM---P-CGECSSC----KSIDN   84 (563)
T ss_pred             HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC---C-CccchHH----HHHHc
Confidence            6789999999999999964   2345678999999999999999998872111110000   0 0000011    11111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHH----HHhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEEEEeCC-hHHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQ----QLIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLIITSRN-EKLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~IIiTTR~-~~v~~  189 (398)
                      .-...............+..+.....    -..+++-++|+|+++  +....+.|...+..- ..+.+|++|.+ ..+..
T Consensus        85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~  164 (563)
T PRK06647         85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA  164 (563)
T ss_pred             CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence            00000000000001223333322211    123566799999998  445556666666532 34555555544 44544


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .+......+++.+++. ++....+.+.+...+...++   +.+..|++.++|-+..+.
T Consensus       165 tI~SRc~~~~f~~l~~-~el~~~L~~i~~~egi~id~---eAl~lLa~~s~GdlR~al  218 (563)
T PRK06647        165 TIKSRCQHFNFRLLSL-EKIYNMLKKVCLEDQIKYED---EALKWIAYKSTGSVRDAY  218 (563)
T ss_pred             HHHHhceEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence            4445567899999998 66666666654333333222   366678888888776544

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.29  E-value=8.6e-06  Score=74.32  Aligned_cols=61  Identities=13%  Similarity=0.129  Sum_probs=43.2

Q ss_pred             CCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          130 EGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..+.++.++..+.+.+.    +.+-++++|++.   |....+.+...+. ...++.||+||+...+...
T Consensus       158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~  226 (243)
T cd03272         158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV  226 (243)
T ss_pred             ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence            37888889999999885    357899999999   4444444444443 2237889999998776543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.28  E-value=2.2e-05  Score=71.98  Aligned_cols=85  Identities=19%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             HHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          115 ILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       115 il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ++..+++..  ........+.++.++..+.+.+..+   +-+++||++.   |....+.+...+.  ...|..||++||+
T Consensus       152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~  231 (261)
T cd03271         152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN  231 (261)
T ss_pred             HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            455666654  2333445888999999999999875   6899999998   4444444444443  2347789999999


Q ss_pred             hHHHHHhcCCCceEEcCC
Q 015891          185 EKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l~~  202 (398)
                      .++...   .++++.+.|
T Consensus       232 ~~~i~~---aD~ii~Lgp  246 (261)
T cd03271         232 LDVIKC---ADWIIDLGP  246 (261)
T ss_pred             HHHHHh---CCEEEEecC
Confidence            988753   356777754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.28  E-value=1.1e-05  Score=83.26  Aligned_cols=68  Identities=12%  Similarity=0.147  Sum_probs=49.8

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..++++.++-.+++.+-.++-+++|||+.   |....+.+...+. ..++.++|++||+......+   ++++.+
T Consensus       476 ~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~---d~vi~l  547 (576)
T TIGR02204       476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA---DRIVVM  547 (576)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC---CEEEEE
Confidence            37889999999999999999999999999   3444444433333 23578889999988776543   455555

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.28  E-value=1.2e-05  Score=82.82  Aligned_cols=45  Identities=22%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++|++..+..+...+..    .....+.|+|++|+||||||+.+++.
T Consensus       154 ~~iiGqs~~~~~l~~~ia~----~~~~~vlL~Gp~GtGKTTLAr~i~~~  198 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVAS----PFPQHIILYGPPGVGKTTAARLALEE  198 (615)
T ss_pred             HhceeCcHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999988877743    34567999999999999999999876

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.28  E-value=5.2e-06  Score=72.96  Aligned_cols=70  Identities=11%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEE
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQ  199 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~  199 (398)
                      ..++++++.-.+.++|..+|-|++||++.   .+...+.+...+.   ...|-+|+++-.+...+..+.+...+++
T Consensus       136 ~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle  211 (237)
T COG0410         136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE  211 (237)
T ss_pred             CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence            47899999999999999999999999999   3433333333332   3346799999999998888654433333

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.28  E-value=2.7e-05  Score=65.03  Aligned_cols=135  Identities=16%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE----------------e---------------------cCCc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC----------------T---------------------MSGQ  105 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~----------------~---------------------v~~~  105 (398)
                      --.++|.||+|+|||||.++++.-  +...-....|-.                +                     +...
T Consensus        29 Ge~iaitGPSG~GKStllk~va~L--isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r  106 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR  106 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhc--cCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence            457899999999999999999764  222111111110                0                     0011


Q ss_pred             ccHHHHHHHHHHHcCCCCCCC--CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHH-HHhHcCCCCCC
Q 015891          106 KTAESIVKRILKRLGVDDGTT--NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKH-LSKVLPRGYGE  176 (398)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~-l~~~l~~~~gs  176 (398)
                      .........++..+++.....  ...+.++++.++..+.+-|.-.+.+++||++.+.      ...+. +..++ .....
T Consensus       107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v-~~q~v  185 (223)
T COG4619         107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV-REQNV  185 (223)
T ss_pred             CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh-hhhce
Confidence            112234455666666655322  2234889999999999999999999999999832      22222 22232 24567


Q ss_pred             EEEEEeCChHHHHHhcCCCceEEcCC
Q 015891          177 RLIITSRNEKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~~~~~~l~~  202 (398)
                      .|+-+||+++-+...  .++.+.+.+
T Consensus       186 Av~WiTHd~dqa~rh--a~k~itl~~  209 (223)
T COG4619         186 AVLWITHDKDQAIRH--ADKVITLQP  209 (223)
T ss_pred             EEEEEecChHHHhhh--hheEEEecc
Confidence            899999998765443  244455444

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.28  E-value=1e-05  Score=79.49  Aligned_cols=177  Identities=13%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             CCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      .++.|.+..+++|.+.+...         -+-.....+.|+|++|+|||++|+++++.  ....|-   .+. .+.    
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~fi---~V~-~se----  252 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATFL---RVV-GSE----  252 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCEE---EEe-cch----
Confidence            45789999999998877531         01234567889999999999999999997  443431   111 110    


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---C-
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL---P-  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l---~-  171 (398)
                        +...   .++           .........+.......+.+|+||+++..             +....+...+   . 
T Consensus       253 --L~~k---~~G-----------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg  316 (438)
T PTZ00361        253 --LIQK---YLG-----------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG  316 (438)
T ss_pred             --hhhh---hcc-----------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence              1110   000           11122233344444567899999997622             1111111111   1 


Q ss_pred             --CCCCCEEEEEeCChHHHHHh-c---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          172 --RGYGERLIITSRNEKLTTEM-V---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                        ...+.+||+||+..+..... .   ..+..+++++.+. ++...+|.............    ....++..+.|+.-|
T Consensus       317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~-~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~sgA  391 (438)
T PTZ00361        317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE-KTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDELSGA  391 (438)
T ss_pred             hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH-HHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCCCHH
Confidence              23466888888876555432 1   2256788877776 67778887654332211111    345566677776654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.27  E-value=7.2e-06  Score=80.67  Aligned_cols=130  Identities=17%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE---------------------------------------ec
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC---------------------------------------TM  102 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~---------------------------------------~v  102 (398)
                      .-.+.++.|.+|.|||||++.+..-  + ....+.+|+.                                       .-
T Consensus        33 ~GEV~aL~GeNGAGKSTLmKiLsGv--~-~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre  109 (500)
T COG1129          33 PGEVHALLGENGAGKSTLMKILSGV--Y-PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE  109 (500)
T ss_pred             CceEEEEecCCCCCHHHHHHHHhCc--c-cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence            4678999999999999999999543  1 1111111111                                       00


Q ss_pred             CCc-------ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC
Q 015891          103 SGQ-------KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP  171 (398)
Q Consensus       103 ~~~-------~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~  171 (398)
                      ...       .........++..++.... ...-.+.+-.+++...+++.+..+.-+||||+++.   ....+.|...+.
T Consensus       110 ~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir  189 (500)
T COG1129         110 PTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR  189 (500)
T ss_pred             cccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            000       1233455677787877422 22223478888999999999999989999999993   333333333333


Q ss_pred             --CCCCCEEEEEeCChHHHHHhcCC
Q 015891          172 --RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                        ...|..||++||.-+-...+++.
T Consensus       190 ~Lk~~Gv~ii~ISHrl~Ei~~i~Dr  214 (500)
T COG1129         190 RLKAQGVAIIYISHRLDEVFEIADR  214 (500)
T ss_pred             HHHhCCCEEEEEcCcHHHHHHhcCE
Confidence              45688899999876544444343

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.27  E-value=7.9e-07  Score=84.72  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc--cHHHHHHHHHHHcCCCCCCCC
Q 015891           50 LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK--TAESIVKRILKRLGVDDGTTN  127 (398)
Q Consensus        50 l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~--~~~~~~~~il~~l~~~~~~~~  127 (398)
                      +.+++..   -..-...+|+|++|+|||||++.+++..... +|+..+|+. +....  ...++++.+...+-......+
T Consensus       159 vID~l~P---IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~Vv-LIgER~~EVtdiqrsIlg~vv~st~d~~  233 (416)
T PRK09376        159 IIDLIAP---IGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVL-LIDERPEEVTDMQRSVKGEVVASTFDEP  233 (416)
T ss_pred             eeeeecc---cccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEE-EeCCchhHHHHHHHHhcCcEEEECCCCC
Confidence            4444443   3455678899999999999999999984333 799999998 66555  566667666532211111111


Q ss_pred             CcCCCchHHHHHHHHHHH--hCCCcEEEecCCCCH
Q 015891          128 SFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFEDM  160 (398)
Q Consensus       128 ~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~~  160 (398)
                      ...-..........++++  .++..+|++|+++..
T Consensus       234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~  268 (416)
T PRK09376        234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL  268 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence            000000001111222232  458999999999844

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.27  E-value=2.6e-05  Score=74.05  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCC
Q 015891          147 GKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDA  222 (398)
Q Consensus       147 ~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~  222 (398)
                      +++-++|+|+++  +....+.|...+-. ..++.+|+||++. .+...+......+.+.+++. +.+...+.+..+... 
T Consensus       105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~-~~~~~~L~~~~~~~~-  182 (328)
T PRK05707        105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN-EESLQWLQQALPESD-  182 (328)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH-HHHHHHHHHhcccCC-
Confidence            345677889999  55666667666642 3467777777775 45555556677899999998 556655555432111 


Q ss_pred             cchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891          223 QLKSQARKDLEEKLEKLQGQNEDAVNFP  250 (398)
Q Consensus       223 ~~~~~~~~~~~~I~~~c~GlPlai~~~a  250 (398)
                            .+.+..++..++|.|.....+.
T Consensus       183 ------~~~~~~~l~la~Gsp~~A~~l~  204 (328)
T PRK05707        183 ------ERERIELLTLAGGSPLRALQLH  204 (328)
T ss_pred             ------hHHHHHHHHHcCCCHHHHHHHH
Confidence                  1134566788889887666554

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.27  E-value=7.2e-06  Score=69.13  Aligned_cols=81  Identities=11%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             HHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          111 IVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       111 ~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ....++...|+.+.. ..+...+++++++..+++.|.-.+-.++||++++   ++..-.+...+.  ...|-+.++.|+.
T Consensus       132 ~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE  211 (256)
T COG4598         132 RAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE  211 (256)
T ss_pred             HHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence            345567777776543 3344589999999999999999999999999994   433222222221  2457788999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      ..++...
T Consensus       212 M~FAR~V  218 (256)
T COG4598         212 MGFARDV  218 (256)
T ss_pred             hhHHHhh
Confidence            9998876

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.26  E-value=9.4e-06  Score=80.95  Aligned_cols=164  Identities=12%  Similarity=0.188  Sum_probs=89.5

Q ss_pred             CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-----ccceEEEEec
Q 015891           37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-----FVPRIWVCTM  102 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~~v~~v  102 (398)
                      -+++.|.+..+++|.+.+...         -.-...+-+.|+|++|+|||++|+++++.  ....     .....|+. +
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~-v  257 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLN-I  257 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEe-c
Confidence            366888999999998876420         01234567999999999999999999987  3322     12233443 3


Q ss_pred             CCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHH-HhCCCcEEEecCCCCH----------H----HHHHHH
Q 015891          103 SGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQ-LIGKRYLIVLDDFEDM----------E----VCKHLS  167 (398)
Q Consensus       103 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVLDdv~~~----------~----~~~~l~  167 (398)
                      ....        ++...-..       ............+.. ..+++++|+|||++..          +    .+..+.
T Consensus       258 ~~~e--------Ll~kyvGe-------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL  322 (512)
T TIGR03689       258 KGPE--------LLNKYVGE-------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL  322 (512)
T ss_pred             cchh--------hcccccch-------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence            3210        11100000       000011111111111 1246899999999832          1    111222


Q ss_pred             hHcC---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCC
Q 015891          168 KVLP---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRD  219 (398)
Q Consensus       168 ~~l~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~  219 (398)
                      ..+.   ...+..||.||...+.... +.   ..+..+++++.+. ++...+|++.+..
T Consensus       323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~-e~r~~Il~~~l~~  380 (512)
T TIGR03689       323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA-EAAADIFSKYLTD  380 (512)
T ss_pred             HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH-HHHHHHHHHHhhc
Confidence            2332   1234556667655543322 11   2255689988887 7788899887654

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00176 ftsH cell division protein; Validated

Probab=98.26  E-value=2e-05  Score=81.15  Aligned_cols=178  Identities=16%  Similarity=0.238  Sum_probs=100.7

Q ss_pred             CCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           35 KPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..-+++.|.++..+++.+.+..-.        .....+-+.|+|++|+|||+||+++++.  ....     |+. ++.. 
T Consensus       180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~-is~s-  250 (638)
T CHL00176        180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFS-ISGS-  250 (638)
T ss_pred             CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eee-ccHH-
Confidence            444678998887777776653210        1223567999999999999999999886  2222     222 2211 


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL---  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l---  170 (398)
                         .+....   .+           .........+.......+++|++||++..             ...+.+..++   
T Consensus       251 ---~f~~~~---~g-----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~  313 (638)
T CHL00176        251 ---EFVEMF---VG-----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM  313 (638)
T ss_pred             ---HHHHHh---hh-----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh
Confidence               111100   01           11223344566666678999999999632             1112222222   


Q ss_pred             C---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+..||.||...+.... +.   ..+..+.+.+.+. ++...+++.........  +  ......+++.+.|..
T Consensus       314 dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~-~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G~s  388 (638)
T CHL00176        314 DGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR-EGRLDILKVHARNKKLS--P--DVSLELIARRTPGFS  388 (638)
T ss_pred             ccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH-HHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCCCC
Confidence            2   2345567777776544332 11   1256778877666 66777777765542211  1  124566777777744

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.26  E-value=2.9e-05  Score=78.44  Aligned_cols=178  Identities=16%  Similarity=0.199  Sum_probs=97.8

Q ss_pred             CCCCCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           35 KPPANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..-++++|.+...+++.+++..        .......+-+.++|++|+|||+||+.+++.  ....|     +. ++.  
T Consensus        52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~-i~~--  121 (495)
T TIGR01241        52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FS-ISG--  121 (495)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----ee-ccH--
Confidence            3346789988877777665542        001234556999999999999999999987  22222     22 221  


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHH---HHhHc
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKH---LSKVL  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~---l~~~l  170 (398)
                        ..+....   .+           .........+.......+.+|+|||++..             .....   +...+
T Consensus       122 --~~~~~~~---~g-----------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~  185 (495)
T TIGR01241       122 --SDFVEMF---VG-----------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM  185 (495)
T ss_pred             --HHHHHHH---hc-----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh
Confidence              1111110   01           12233344555555677899999999632             11111   11112


Q ss_pred             C---CCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+..||.||........ +   ...+..++++..+. ++...+++..+.......+    .....+++.+.|..
T Consensus       186 d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~-~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s  260 (495)
T TIGR01241       186 DGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDI-KGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS  260 (495)
T ss_pred             ccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCH-HHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence            1   2234556677765542221 1   12356788876665 6677777776544322211    13456777777755

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.26  E-value=1.1e-05  Score=83.08  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++-.+++.+..++-++||||+.   |.+..+.+...+. ...+.+||++||+.+....   .++++.+
T Consensus       471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~---~d~i~~l  542 (585)
T TIGR01192       471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN---ADLVLFL  542 (585)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc---CCEEEEE
Confidence            47899999999999999999999999999   4444444544443 2347789999998877654   3555555

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03211 ABC transporter G-25; Provisional

Probab=98.26  E-value=7.7e-06  Score=85.05  Aligned_cols=124  Identities=16%  Similarity=0.201  Sum_probs=79.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-------------EEecCCc-----------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-------------VCTMSGQ-----------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-------------v~~v~~~-----------------------  105 (398)
                      .-.+++|.|++|+|||||.+.+.....-. ...+.++             +.++.+.                       
T Consensus        93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~  171 (659)
T PLN03211         93 PGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPK  171 (659)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCC
Confidence            34689999999999999999998762110 0111111             1111111                       


Q ss_pred             -cc---HHHHHHHHHHHcCCCCCC------CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          106 -KT---AESIVKRILKRLGVDDGT------TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       106 -~~---~~~~~~~il~~l~~~~~~------~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                       ..   ..+...++++.+++....      ......+++++++..+.+.+..++-+++||++.   |......+...+. 
T Consensus       172 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~  251 (659)
T PLN03211        172 SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS  251 (659)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence             00   112345677778775421      112347899999999999999999999999999   4433333333332 


Q ss_pred             -CCCCCEEEEEeCChH
Q 015891          172 -RGYGERLIITSRNEK  186 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~  186 (398)
                       ...|.+||+|||+..
T Consensus       252 l~~~g~TvI~~sH~~~  267 (659)
T PLN03211        252 LAQKGKTIVTSMHQPS  267 (659)
T ss_pred             HHhCCCEEEEEecCCC
Confidence             225789999999875

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.26  E-value=1.5e-05  Score=81.77  Aligned_cols=137  Identities=18%  Similarity=0.227  Sum_probs=83.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccc-----------eEEEEecCCc--------------ccHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVP-----------RIWVCTMSGQ--------------KTAESIV  112 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~-----------~~~v~~v~~~--------------~~~~~~~  112 (398)
                      ..-..++|+|++|+|||||++.+..-.... ..  ++.           ...+..+.++              ....+..
T Consensus       366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~  445 (555)
T TIGR01194       366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNA  445 (555)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHH
Confidence            456799999999999999999996531110 00  000           0001111111              0112334


Q ss_pred             HHHHHHcCCCCCC-------CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC--CCCCCEEE
Q 015891          113 KRILKRLGVDDGT-------TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP--RGYGERLI  179 (398)
Q Consensus       113 ~~il~~l~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~--~~~gs~II  179 (398)
                      .+.++.+++....       ......+++++++-.+.+.+-.++-++|||++.   |.+..+.+... +.  ...+.++|
T Consensus       446 ~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tii  525 (555)
T TIGR01194       446 QQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTII  525 (555)
T ss_pred             HHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence            5567776655321       112347899999999999999999999999999   44444444332 21  13477899


Q ss_pred             EEeCChHHHHHhcCCCceEEc
Q 015891          180 ITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       180 iTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ++||+......   .++++.+
T Consensus       526 iisH~~~~~~~---~d~i~~l  543 (555)
T TIGR01194       526 IISHDDQYFEL---ADQIIKL  543 (555)
T ss_pred             EEeccHHHHHh---CCEEEEE
Confidence            99998776543   3455555

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.25  E-value=9.9e-06  Score=85.34  Aligned_cols=69  Identities=14%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++.+..++-+++||++.   |.+..+.+...+. ...+.++|++||+.+....+   ++++.+
T Consensus       592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~---d~ii~l  664 (694)
T TIGR01846       592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC---DRIIVL  664 (694)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhC---CEEEEE
Confidence            348899999999999999999999999999   4444444444443 23567899999988776543   455555

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.24  E-value=2.5e-05  Score=71.68  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             HHHHHHHHHcCCCCC---------------------CCCCcCCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHH
Q 015891          110 SIVKRILKRLGVDDG---------------------TTNSFEGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DME  161 (398)
Q Consensus       110 ~~~~~il~~l~~~~~---------------------~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~  161 (398)
                      +....+++.+++...                     .......+.+++++..+.+.+.    ..+-++++|++.   |..
T Consensus       125 ~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~  204 (251)
T cd03273         125 QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS  204 (251)
T ss_pred             HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHH
Confidence            456667788877521                     1223347888888889998886    566899999999   444


Q ss_pred             HHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          162 VCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       162 ~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..+.+...+. ...|..||++||..++...+   ++++.+.
T Consensus       205 ~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~---d~v~~~~  242 (251)
T cd03273         205 HTQNIGRMIKTHFKGSQFIVVSLKEGMFNNA---NVLFRTR  242 (251)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEECCHHHHHhC---CEEEEEE
Confidence            4444444433 23467899999998776643   4556554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.24  E-value=2.2e-05  Score=74.17  Aligned_cols=196  Identities=18%  Similarity=0.180  Sum_probs=108.8

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-------------CccccceEEEEecCC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-------------KTQFVPRIWVCTMSG  104 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~~v~~v~~  104 (398)
                      ++++|.+...+.+...+..   ..-...+.++|+.|+||+++|..+++...-             ...++...|+.....
T Consensus         4 ~~iiGq~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~   80 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ   80 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence            4689999999999999964   223578999999999999999888654110             112233344431100


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcCCCCCCE
Q 015891          105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLPRGYGER  177 (398)
Q Consensus       105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~  177 (398)
                       ..-...-...+...+.......   .-..++.+ .+.+.+.     +++-++|+|+++  +....+.|...+-.-+.+.
T Consensus        81 -~~g~~~~~~~~~~~~~~~~~~~---~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~  155 (314)
T PRK07399         81 -HQGKLITASEAEEAGLKRKAPP---QIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT  155 (314)
T ss_pred             -ccccccchhhhhhccccccccc---cCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCe
Confidence             0000000111111221111000   11223322 2333332     456799999998  4455666666664223455


Q ss_pred             EEEEeCC-hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          178 LIITSRN-EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       178 IIiTTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +|++|.+ ..+...+......+++.+++. ++....+.+........  .    ....++..++|-|.....
T Consensus       156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~-~~~~~~L~~~~~~~~~~--~----~~~~l~~~a~Gs~~~al~  220 (314)
T PRK07399        156 LILIAPSPESLLPTIVSRCQIIPFYRLSD-EQLEQVLKRLGDEEILN--I----NFPELLALAQGSPGAAIA  220 (314)
T ss_pred             EEEEECChHhCcHHHHhhceEEecCCCCH-HHHHHHHHHhhccccch--h----HHHHHHHHcCCCHHHHHH
Confidence            6655544 456666666788999999999 66766666643221111  0    134566777777765443

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.24  E-value=1.5e-05  Score=81.95  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++..+++.+..++-+++|||+.   |.+..+.+...+. ...+.++|++||+......   .++++.+
T Consensus       451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~---~d~i~~l  522 (569)
T PRK10789        451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE---ASEILVM  522 (569)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc---CCEEEEE
Confidence            47889999999999999999999999999   4444444444443 2356788888888766554   3455555

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.23  E-value=2.9e-06  Score=70.01  Aligned_cols=94  Identities=20%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------ecCCc------c-----cHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------TMSGQ------K-----TAESIVKR  114 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~v~~~------~-----~~~~~~~~  114 (398)
                      -.+++|+|++|+|||||++.++...  .. ....+++.                 ++.+.      .     ........
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~--~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~   87 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL--PP-DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE   87 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS--HE-SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred             CCEEEEEccCCCccccceeeecccc--cc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999997652  11 11111111                 01111      1     12335666


Q ss_pred             HHHHcCCCCCCCC-----CcCCCchHHHHHHHHHHHhCCCcEEEecCCCC
Q 015891          115 ILKRLGVDDGTTN-----SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED  159 (398)
Q Consensus       115 il~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~  159 (398)
                      ++..++.......     ....+.+++++..+.+.+..++-+++|||+.+
T Consensus        88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            7777765542111     13488999999999999999999999999863

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.23  E-value=6.9e-06  Score=72.85  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=45.5

Q ss_pred             CCchHHHH------HHHHHHHhCCCcEEEecCCC---CHHHHH-HHHhHcC--CCC-CCEEEEEeCChHHHHHhcCCCce
Q 015891          131 GQGLAFLD------YVLQQQLIGKRYLIVLDDFE---DMEVCK-HLSKVLP--RGY-GERLIITSRNEKLTTEMVGEENL  197 (398)
Q Consensus       131 ~~~~~~~~------~~l~~~l~~k~~LlVLDdv~---~~~~~~-~l~~~l~--~~~-gs~IIiTTR~~~v~~~~~~~~~~  197 (398)
                      .+.++.++      ..+.+.+..++-+++||++.   |....+ .+...+.  ... +..||++||+.+....   .+++
T Consensus       116 LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~---~d~i  192 (204)
T cd03240         116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA---ADHI  192 (204)
T ss_pred             cCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh---CCEE
Confidence            56666654      45777888899999999999   444444 4444443  222 6789999999887653   3456


Q ss_pred             EEcC
Q 015891          198 HQLQ  201 (398)
Q Consensus       198 ~~l~  201 (398)
                      +.+.
T Consensus       193 ~~l~  196 (204)
T cd03240         193 YRVE  196 (204)
T ss_pred             EEEe
Confidence            6554

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.22  E-value=1.4e-05  Score=71.25  Aligned_cols=60  Identities=15%  Similarity=0.129  Sum_probs=41.0

Q ss_pred             CCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          131 GQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       131 ~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                      .+.+++++..+.+.+.    +.+-++++|++.   |....+.+...+. ...+.++|++|++..+...
T Consensus       128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~  195 (212)
T cd03274         128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFEL  195 (212)
T ss_pred             cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHh
Confidence            6777888888888774    346899999998   4545555554443 2345677888887766553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.20  E-value=8.7e-06  Score=84.85  Aligned_cols=129  Identities=18%  Similarity=0.238  Sum_probs=83.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEecC---Cccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCTMS---GQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~v~---~~~~----------  107 (398)
                      .-..++|.|++|+|||||++.+....... .  .|+                  ...++..-.   ...+          
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  112 (648)
T PRK10535         33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV  112 (648)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHH
Confidence            45689999999999999999997652110 0  000                  111111000   0001          


Q ss_pred             --------HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          108 --------AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                              ..+...++++.+++.... ......+.++.++..+.+.+..++-++++|++.   |....+.+...+.  ..
T Consensus       113 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~  192 (648)
T PRK10535        113 YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD  192 (648)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence                    112335566777765432 223348899999999999999999999999998   5544444444443  23


Q ss_pred             CCCEEEEEeCChHHHHH
Q 015891          174 YGERLIITSRNEKLTTE  190 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~  190 (398)
                      .+..||++||+.+.+..
T Consensus       193 ~g~tilivsH~~~~~~~  209 (648)
T PRK10535        193 RGHTVIIVTHDPQVAAQ  209 (648)
T ss_pred             cCCEEEEECCCHHHHHh
Confidence            47899999999988764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.20  E-value=2.1e-05  Score=65.96  Aligned_cols=83  Identities=13%  Similarity=0.195  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHcCCCCCCC--CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH----HHHHHHHhHcCCCCCCEEE
Q 015891          109 ESIVKRILKRLGVDDGTT--NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM----EVCKHLSKVLPRGYGERLI  179 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~----~~~~~l~~~l~~~~gs~II  179 (398)
                      .......++...+.....  .+...+++.+++-.+++-|-..+-|+++|++.   |.    ..++.+.... ..-+-.++
T Consensus       128 R~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv-~~l~la~v  206 (258)
T COG4107         128 RAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV-RELGLAVV  206 (258)
T ss_pred             HHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH-HhcCceEE
Confidence            334456666665554322  23336888888999999999999999999998   32    2233333222 34577899


Q ss_pred             EEeCChHHHHHhc
Q 015891          180 ITSRNEKLTTEMV  192 (398)
Q Consensus       180 iTTR~~~v~~~~~  192 (398)
                      |.|||-.|+....
T Consensus       207 iVTHDl~VarLla  219 (258)
T COG4107         207 IVTHDLAVARLLA  219 (258)
T ss_pred             EEechhHHHHHhh
Confidence            9999999988763

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.20  E-value=2.5e-05  Score=65.31  Aligned_cols=138  Identities=15%  Similarity=0.203  Sum_probs=90.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC--------------------------------------
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG--------------------------------------  104 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~--------------------------------------  104 (398)
                      -..+++.|++|+|||||.+.+|.+  +... .+.+|+.....                                      
T Consensus        37 GECvvL~G~SG~GKStllr~LYaN--Y~~d-~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdV  113 (235)
T COG4778          37 GECVVLHGPSGSGKSTLLRSLYAN--YLPD-EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDV  113 (235)
T ss_pred             ccEEEeeCCCCCcHHHHHHHHHhc--cCCC-CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHH
Confidence            457899999999999999999987  2221 23344321110                                      


Q ss_pred             -----------cccHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHh
Q 015891          105 -----------QKTAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSK  168 (398)
Q Consensus       105 -----------~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~  168 (398)
                                 ..........++..|.+++.  ...+...+++++++..+.+-+.-.--+++||++..   ..-......
T Consensus       114 vaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve  193 (235)
T COG4778         114 VAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE  193 (235)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHH
Confidence                       00112234567777776652  34455578899999999998887778889999982   211122222


Q ss_pred             HcC--CCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCC
Q 015891          169 VLP--RGYGERLIITSRNEKLTTEMVGEENLHQLQPLSD  205 (398)
Q Consensus       169 ~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~  205 (398)
                      .+.  ...|+.+|=+-||+.+-...  .++.+.+.+.+.
T Consensus       194 li~e~Ka~GaAlvGIFHDeevre~v--adR~~~~~~~~~  230 (235)
T COG4778         194 LIREAKARGAALVGIFHDEEVREAV--ADRLLDVSAFSP  230 (235)
T ss_pred             HHHHHHhcCceEEEeeccHHHHHHH--hhheeecccCCc
Confidence            332  45689999999999888775  356677776554

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.19  E-value=1.6e-05  Score=70.97  Aligned_cols=62  Identities=18%  Similarity=0.088  Sum_probs=44.5

Q ss_pred             CCCchHHHHHHHHHHHhC----------CCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891          130 EGQGLAFLDYVLQQQLIG----------KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~----------k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ..+.++.++..+.+.+..          .+-+++||++.   |....+.+...+.  ...+..||++||+.+....+
T Consensus       123 ~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~  199 (213)
T cd03279         123 TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI  199 (213)
T ss_pred             ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh
Confidence            468888888899888863          45799999998   4444444444433  22377899999999877665

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.19  E-value=1.5e-05  Score=73.05  Aligned_cols=130  Identities=14%  Similarity=0.134  Sum_probs=85.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCC----------------------------C---CCccccceEEEEecCC-----
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKP----------------------------D---VKTQFVPRIWVCTMSG-----  104 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~----------------------------~---~~~~F~~~~~v~~v~~-----  104 (398)
                      ..-.+..|-|.+|+|||||++++-.-.                            +   +..+|...-|-+ +-+     
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt-Vl~Nv~fG  130 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT-VLENVAFG  130 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh-Hhhhhhcc
Confidence            345688999999999999999983210                            0   111222222222 111     


Q ss_pred             -------cccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhH
Q 015891          105 -------QKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKV  169 (398)
Q Consensus       105 -------~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~  169 (398)
                             .....+...+.++..|+..... .+.+.+++.+++.-++++|...+-++++|++.+.       +..+.|..+
T Consensus       131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L  210 (386)
T COG4175         131 LEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL  210 (386)
T ss_pred             eeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence                   1123455667777888876533 3445899999999999999999999999999843       222222222


Q ss_pred             cCCCCCCEEEEEeCChHHHHHhc
Q 015891          170 LPRGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       170 l~~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      - ..-+-+|+++|||-+-+-.+.
T Consensus       211 q-~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         211 Q-AKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             H-HHhCCeEEEEecCHHHHHhcc
Confidence            1 223668999999988777663

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.17  E-value=1.6e-05  Score=82.39  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=79.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE--------------ecCCc---------------------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC--------------TMSGQ---------------------  105 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~--------------~v~~~---------------------  105 (398)
                      ..-.+++|.|++|+|||||.+.+...........+.+++.              ++.+.                     
T Consensus        49 ~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~  128 (617)
T TIGR00955        49 KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRM  128 (617)
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCC
Confidence            3456999999999999999999987622110111111111              01110                     


Q ss_pred             ------ccHHHHHHHHHHHcCCCCCCCCC-------cCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhH
Q 015891          106 ------KTAESIVKRILKRLGVDDGTTNS-------FEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKV  169 (398)
Q Consensus       106 ------~~~~~~~~~il~~l~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~  169 (398)
                            .........+++.+++.......       ...+++++++..+.+.+..++-+++|||+.+   ......+...
T Consensus       129 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~  208 (617)
T TIGR00955       129 PRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV  208 (617)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHH
Confidence                  00122456778888775432221       2378999999999999999999999999993   3222233223


Q ss_pred             cC--CCCCCEEEEEeCChH
Q 015891          170 LP--RGYGERLIITSRNEK  186 (398)
Q Consensus       170 l~--~~~gs~IIiTTR~~~  186 (398)
                      +.  ...|.+||+|+|+..
T Consensus       209 L~~l~~~g~tvi~~~hq~~  227 (617)
T TIGR00955       209 LKGLAQKGKTIICTIHQPS  227 (617)
T ss_pred             HHHHHhCCCEEEEEeCCCC
Confidence            22  224788999999863

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.16  E-value=6e-05  Score=69.50  Aligned_cols=123  Identities=15%  Similarity=0.096  Sum_probs=67.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcC-CCCCCC-CCcC-CCchHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG-VDDGTT-NSFE-GQGLAFL  137 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~-~~~~~~-~~~~-~~~~~~~  137 (398)
                      .....++|+|++|+|||||++.+...  +.. ....+++.  ...........++..... ...... ...+ ..+..+.
T Consensus       109 ~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i~~~--g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~  183 (270)
T TIGR02858       109 NRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQLGLR--GKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA  183 (270)
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceEEEC--CEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence            34578999999999999999999987  332 23333432  111110001122222221 111110 0001 1111222


Q ss_pred             HHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          138 DYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       138 ~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      ...........+-++++|++...+....+...+.  .|..+|+|||+..+...
T Consensus       184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~  234 (270)
T TIGR02858       184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH--AGVSIIATAHGRDVEDL  234 (270)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh--CCCEEEEEechhHHHHH
Confidence            2233333346899999999998766555554442  47899999998766443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.16  E-value=2.7e-05  Score=68.69  Aligned_cols=133  Identities=15%  Similarity=0.130  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCC--CC-----C---------ccccceEEEEecCC-----c-c-c-HHHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKP--DV-----K---------TQFVPRIWVCTMSG-----Q-K-T-AESIVKRILKRL  119 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~--~~-----~---------~~F~~~~~v~~v~~-----~-~-~-~~~~~~~il~~l  119 (398)
                      .+.+|+|++|+|||||..+++.-.  ..     .         ......+.+. +..     . . . ......++++. 
T Consensus        22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-   99 (198)
T cd03276          22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVT-LKNQGLDANPLCVLSQDMARSFLTS-   99 (198)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEE-EEcCCccCCcCCHHHHHHHHHHhcc-
Confidence            467899999999999999986310  00     0         0011122222 111     0 1 1 11233344444 


Q ss_pred             CCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC---CHHHH----HHHHhHcCC-CCCCEEEEEeCChHH
Q 015891          120 GVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE---DMEVC----KHLSKVLPR-GYGERLIITSRNEKL  187 (398)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~---~~~~~----~~l~~~l~~-~~gs~IIiTTR~~~v  187 (398)
                       ...........+.+++++..+...+    ...+-+++||++.   |....    +.+...... ..+..||++|++...
T Consensus       100 -~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~  178 (198)
T cd03276         100 -NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG  178 (198)
T ss_pred             -ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence             1111223334788888888888888    4799999999998   33322    333333222 124579999998876


Q ss_pred             HHHhcCCCceEEc
Q 015891          188 TTEMVGEENLHQL  200 (398)
Q Consensus       188 ~~~~~~~~~~~~l  200 (398)
                      +..+ +...++++
T Consensus       179 i~~~-d~v~~~~~  190 (198)
T cd03276         179 LASS-DDVKVFRM  190 (198)
T ss_pred             cccc-cceeEEEe
Confidence            6654 44445544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.14  E-value=2.1e-05  Score=74.44  Aligned_cols=102  Identities=11%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             HHHHHHHcCCCCCCC----CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEE
Q 015891          112 VKRILKRLGVDDGTT----NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLII  180 (398)
Q Consensus       112 ~~~il~~l~~~~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIi  180 (398)
                      ..++++..|+..+..    .+.+.+++++++.+++-+|.+++-|+|-|+++..       ..++.+.. +....|-.+++
T Consensus       135 ~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~-Lq~~~gMa~lf  213 (534)
T COG4172         135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE-LQAELGMAILF  213 (534)
T ss_pred             HHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHH-HHHHhCcEEEE
Confidence            345677777776532    3445899999999999999999999999999843       33333332 22445889999


Q ss_pred             EeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          181 TSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       181 TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      +|||-.+...+.+...++.-+.+-+...+..+|.
T Consensus       214 ITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~  247 (534)
T COG4172         214 ITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA  247 (534)
T ss_pred             EeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence            9999998888765555555555555455666664

>TIGR00767 rho transcription termination factor Rho

Probab=98.13  E-value=5.7e-06  Score=79.29  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=61.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc--ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ--KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD  138 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~  138 (398)
                      ..-..++|+|++|+|||||++.+++.... .+|+..+|+. +..+  ....++++.++..+-......+...........
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~Vl-LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v  243 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVL-LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV  243 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEE-EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence            45567999999999999999999998322 2599899998 5544  678888888854432222111110000111111


Q ss_pred             HHHHHH--HhCCCcEEEecCCCCH
Q 015891          139 YVLQQQ--LIGKRYLIVLDDFEDM  160 (398)
Q Consensus       139 ~~l~~~--l~~k~~LlVLDdv~~~  160 (398)
                      ....+.  -.+++.+|++|+++..
T Consensus       244 ~e~Ae~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       244 IEKAKRLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHHHHHHcCCCeEEEEEChhHH
Confidence            112222  2468999999999854

Members of this family differ in the specificity of RNA binding.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.13  E-value=3.4e-05  Score=63.93  Aligned_cols=132  Identities=15%  Similarity=0.274  Sum_probs=84.5

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHH--cCCC------CCccccc-----------------------eEEEEecC----
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIF--HKPD------VKTQFVP-----------------------RIWVCTMS----  103 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~--~~~~------~~~~F~~-----------------------~~~v~~v~----  103 (398)
                      +...--.+.+.||+|.|||+|.+.+-  .-++      ...+|+.                       ..|-+ +.    
T Consensus        24 ~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph-ltv~en  102 (242)
T COG4161          24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH-LTVQEN  102 (242)
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch-hHHHHH
Confidence            33456678999999999999999772  1100      0122321                       23332 11    


Q ss_pred             -----------CcccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh
Q 015891          104 -----------GQKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK  168 (398)
Q Consensus       104 -----------~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~  168 (398)
                                 ..........++++.+.+... +..+...+++++++..+++.|.-++-+++||++.   |++....+..
T Consensus       103 lieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~  182 (242)
T COG4161         103 LIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS  182 (242)
T ss_pred             HHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH
Confidence                       011222334567777776653 2334558999999999999999999999999998   5543333333


Q ss_pred             HcC--CCCCCEEEEEeCChHHHHHh
Q 015891          169 VLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       169 ~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      .+.  .+.|-+=+|.|+.-+++...
T Consensus       183 iikel~~tgitqvivthev~va~k~  207 (242)
T COG4161         183 IIKELAETGITQVIVTHEVEVARKT  207 (242)
T ss_pred             HHHHHHhcCceEEEEEeehhHHHhh
Confidence            332  34576778888888888875

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.11  E-value=8.7e-06  Score=66.42  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |.|+|++|+||||+|+.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            579999999999999999998

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.11  E-value=4.7e-05  Score=69.67  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=42.8

Q ss_pred             CCCchHHHHHHHHHHHhC----CCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891          130 EGQGLAFLDYVLQQQLIG----KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~----k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..+.+++++..+.+.+..    .+-+++||++.   |....+.+...+.  ...|..||++||+..+...
T Consensus       155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~  224 (247)
T cd03275         155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK  224 (247)
T ss_pred             HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence            367788888888888864    47899999999   4443344433332  2237889999999887654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.10  E-value=4.1e-05  Score=62.55  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+.|+|++|+||||+++.++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARE   25 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhc
Confidence            357899999999999999999988

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.10  E-value=1.9e-05  Score=67.34  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCC-----CC--CccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKP-----DV--KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF  136 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~-----~~--~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~  136 (398)
                      +...|+|++|.|||++++.+.--.     ..  .......+.+..++-..        +...          ...+.++.
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------i~~~----------~~lS~G~~   83 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL--------IFTR----------LQLSGGEK   83 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE--------ehhe----------eeccccHH
Confidence            689999999999999999873210     00  00000111111000000        1111          11355677


Q ss_pred             HHHHHHHHHhC----CCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEcCC
Q 015891          137 LDYVLQQQLIG----KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       137 ~~~~l~~~l~~----k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~  202 (398)
                      .+..+.+.+..    ++.++++|++.   |......+...+.  ...++.+|+|||+.++....   ++.+.+.+
T Consensus        84 ~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~---d~~~~l~~  155 (162)
T cd03227          84 ELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA---DKLIHIKK  155 (162)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh---hhEEEEEE
Confidence            77888888864    67999999998   3333333322221  11278999999999887653   44555543

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.10  E-value=1e-05  Score=70.66  Aligned_cols=119  Identities=16%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHH
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQ  144 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~  144 (398)
                      ++.|+|++|.||||+++.+.-.. +-.+  ..+++. ...  ..-.....++..++..+....  ..+........+...
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~-~la~--~G~~v~-a~~--~~~~~~d~il~~~~~~d~~~~--~~s~fs~~~~~l~~~   72 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIV-IMAQ--IGSFVP-AES--AELPVFDRIFTRIGASDSLAQ--GLSTFMVEMKETANI   72 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHH-HHHH--hCCCee-ehh--eEecccceEEEEeCCCCchhc--cccHHHHHHHHHHHH
Confidence            36799999999999999996321 0000  001111 000  000001111122222211111  112333334456666


Q ss_pred             HhC--CCcEEEecCCC---CHHHHHH----HHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891          145 LIG--KRYLIVLDDFE---DMEVCKH----LSKVLPRGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       145 l~~--k~~LlVLDdv~---~~~~~~~----l~~~l~~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +..  ++.|+++|++.   |......    +...+....++.+|++||+.++...+
T Consensus        73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~  128 (185)
T smart00534       73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA  128 (185)
T ss_pred             HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence            655  89999999997   3322111    11222222478899999999877654

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.10  E-value=9.1e-05  Score=63.10  Aligned_cols=138  Identities=19%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC---CC---------------ccccceEEEEecC
Q 015891           42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD---VK---------------TQFVPRIWVCTMS  103 (398)
Q Consensus        42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~---~~---------------~~F~~~~~v~~v~  103 (398)
                      |-+...+.|..++..   ..-...+.++|+.|+||+++|..+++...   ..               .......|+....
T Consensus         1 gq~~~~~~L~~~~~~---~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~   77 (162)
T PF13177_consen    1 GQEEIIELLKNLIKS---GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK   77 (162)
T ss_dssp             S-HHHHHHHHHHHHC---TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred             CcHHHHHHHHHHHHc---CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence            456667777777753   23455789999999999999999965411   11               1122333443111


Q ss_pred             C--cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEE
Q 015891          104 G--QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERL  178 (398)
Q Consensus       104 ~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~I  178 (398)
                      .  .... +.++++...+.....                     .++.-++|+||++  +.+....|...+- ...++.+
T Consensus        78 ~~~~i~i-~~ir~i~~~~~~~~~---------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f  135 (162)
T PF13177_consen   78 KKKSIKI-DQIREIIEFLSLSPS---------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF  135 (162)
T ss_dssp             SSSSBSH-HHHHHHHHHCTSS-T---------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred             ccchhhH-HHHHHHHHHHHHHHh---------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence            1  1112 222233333322211                     1346799999999  4566677777764 3457888


Q ss_pred             EEEeCChH-HHHHhcCCCceEEcCCCC
Q 015891          179 IITSRNEK-LTTEMVGEENLHQLQPLS  204 (398)
Q Consensus       179 IiTTR~~~-v~~~~~~~~~~~~l~~L~  204 (398)
                      |++|++.+ +...+......+.+.+|+
T Consensus       136 iL~t~~~~~il~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  136 ILITNNPSKILPTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred             EEEECChHHChHHHHhhceEEecCCCC
Confidence            88887754 666666777888888875

...

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.10  E-value=2e-05  Score=84.25  Aligned_cols=153  Identities=16%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC---CCcccc-ceEEEEecCCcccHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD---VKTQFV-PRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~---~~~~F~-~~~~v~~v~~~~~~~~~~~  113 (398)
                      ++++||+++++++.+.|..    ....-+.|+|++|+|||++|..++....   +..... ..+|.-++      ..   
T Consensus       179 ~~~igr~~ei~~~~~~L~r----~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~------~~---  245 (821)
T CHL00095        179 DPVIGREKEIERVIQILGR----RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI------GL---  245 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcc----cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH------HH---
Confidence            5689999999999999965    2344567999999999999999987611   111111 23332211      11   


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------HHHHHHHhHcCCCCCCEEEEEeC
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------EVCKHLSKVLPRGYGERLIITSR  183 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~gs~IIiTTR  183 (398)
                       ++.  +...      ...-.+.+...+......++.+|++|+++..          +..+.|.+.+..+ .-++|.+|.
T Consensus       246 -l~a--g~~~------~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt  315 (821)
T CHL00095        246 -LLA--GTKY------RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATT  315 (821)
T ss_pred             -Hhc--cCCC------ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCC
Confidence             110  1000      0011222233333333456899999999722          2344555555433 345555555


Q ss_pred             ChHHHH------HhcCCCceEEcCCCCChhHHHHHHH
Q 015891          184 NEKLTT------EMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       184 ~~~v~~------~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      ......      .+......+.+.+.+. ++...+++
T Consensus       316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~-~e~~aILr  351 (821)
T CHL00095        316 LDEYRKHIEKDPALERRFQPVYVGEPSV-EETIEILF  351 (821)
T ss_pred             HHHHHHHHhcCHHHHhcceEEecCCCCH-HHHHHHHH
Confidence            443321      1222345678887776 44555554

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.10  E-value=4.2e-05  Score=78.34  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=40.4

Q ss_pred             CCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++|-+..++.+..++.... .....++++|+|++|+||||+++.++..
T Consensus        84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~  133 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE  133 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999987521 1233467999999999999999999886

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.8e-05  Score=70.55  Aligned_cols=135  Identities=19%  Similarity=0.298  Sum_probs=78.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCC--CccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDV--KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      .+.+.++||+|.|||+|+++++++..+  .+.|.....+. +    +...++......-           ..-...+...
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE-i----nshsLFSKWFsES-----------gKlV~kmF~k  240 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE-I----NSHSLFSKWFSES-----------GKLVAKMFQK  240 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE-E----ehhHHHHHHHhhh-----------hhHHHHHHHH
Confidence            689999999999999999999998543  34555555555 3    3344555544422           1334555666


Q ss_pred             HHHHHhCCC--cEEEecCCCCHH--------------HH---HHHHhHc---CCCCCCEEEEEeCC-hHHHH-H-hcCCC
Q 015891          141 LQQQLIGKR--YLIVLDDFEDME--------------VC---KHLSKVL---PRGYGERLIITSRN-EKLTT-E-MVGEE  195 (398)
Q Consensus       141 l~~~l~~k~--~LlVLDdv~~~~--------------~~---~~l~~~l---~~~~gs~IIiTTR~-~~v~~-~-~~~~~  195 (398)
                      +.+.+.++.  +++++|+|.+..              ..   ..+...+   ...++ .+|+||.+ .+-.. . +..++
T Consensus       241 I~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N-vliL~TSNl~~siD~AfVDRAD  319 (423)
T KOG0744|consen  241 IQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN-VLILATSNLTDSIDVAFVDRAD  319 (423)
T ss_pred             HHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC-EEEEeccchHHHHHHHhhhHhh
Confidence            777776665  467789998541              11   1222222   12334 45555544 22111 1 12346


Q ss_pred             ceEEcCCCCChhHHHHHHHh
Q 015891          196 NLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       196 ~~~~l~~L~~~e~~~~l~~~  215 (398)
                      ....++|-+. ++...+++.
T Consensus       320 i~~yVG~Pt~-~ai~~Ilks  338 (423)
T KOG0744|consen  320 IVFYVGPPTA-EAIYEILKS  338 (423)
T ss_pred             heeecCCccH-HHHHHHHHH
Confidence            6778888777 666666554

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.08  E-value=1.7e-05  Score=69.96  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH-HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE-SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~  142 (398)
                      ..+.|.|+.|+||||++..+...  +.......++..  ..+.... .-...+..+-.        . ..........++
T Consensus         2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~--e~~~E~~~~~~~~~i~q~~--------v-g~~~~~~~~~i~   68 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI--EDPIEFVHESKRSLINQRE--------V-GLDTLSFENALK   68 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE--cCCccccccCccceeeecc--------c-CCCccCHHHHHH
Confidence            47899999999999999988776  333333333322  1111100 00000000000        0 011223355678


Q ss_pred             HHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          143 QQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..++..+-++++|++.+.+.........  ..|..++.|+|..+....
T Consensus        69 ~aLr~~pd~ii~gEird~e~~~~~l~~a--~~G~~v~~t~Ha~~~~~~  114 (198)
T cd01131          69 AALRQDPDVILVGEMRDLETIRLALTAA--ETGHLVMSTLHTNSAAKT  114 (198)
T ss_pred             HHhcCCcCEEEEcCCCCHHHHHHHHHHH--HcCCEEEEEecCCcHHHH
Confidence            8888889999999999876555433332  246679999998876654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=4e-06  Score=79.66  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=62.1

Q ss_pred             HHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHH---HHhHcCCCCCCEEEEEeCChHH
Q 015891          113 KRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKH---LSKVLPRGYGERLIITSRNEKL  187 (398)
Q Consensus       113 ~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~---l~~~l~~~~gs~IIiTTR~~~v  187 (398)
                      +.|+..||+...  ..+....+++-+.+..++++|--.+.||.||++.+.-.+..   |-.++ .+..-+++|.||+..+
T Consensus       393 RRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYL-QgWkKTLLIVSHDQgF  471 (807)
T KOG0066|consen  393 RRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYL-QGWKKTLLIVSHDQGF  471 (807)
T ss_pred             HHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHH-hhhhheeEEEecccch
Confidence            445566665543  12222357777888899999999999999999995422221   11222 2345679999999998


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHhh
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRDS  216 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~  216 (398)
                      +..+|.....+.-+.|-....-..+|++.
T Consensus       472 LD~VCtdIIHLD~qkLhyYrGNY~~FKKm  500 (807)
T KOG0066|consen  472 LDSVCTDIIHLDNQKLHYYRGNYTLFKKM  500 (807)
T ss_pred             HHHHHHHHhhhhhhhhhhhcchHHHHHHH
Confidence            88765432222222333333345566553

>PLN03232 ABC transporter C family member; Provisional

Probab=98.08  E-value=3.5e-05  Score=87.41  Aligned_cols=68  Identities=10%  Similarity=0.107  Sum_probs=51.2

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++-.+++++-.++-+|||||++   |.+..+.+...+. ..+++++|+++|..+....+   ++++.+
T Consensus      1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~---DrIlVL 1442 (1495)
T PLN03232       1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC---DKILVL 1442 (1495)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC---CEEEEE
Confidence            47889999999999999999999999999   4455555555554 33578899999887665543   455554

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.08  E-value=3.1e-05  Score=81.80  Aligned_cols=117  Identities=18%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             CCcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIV  112 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~  112 (398)
                      ..++|.+..++.|...+....     .......+.++|++|+|||+||+.++..  ..   ...+.++ ++.-... .. 
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~---~~~~~~d-~se~~~~-~~-  525 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LG---VHLERFD-MSEYMEK-HT-  525 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hc---CCeEEEe-Cchhhhc-cc-
Confidence            568999999999888877410     1123456899999999999999999887  32   2233443 3321110 01 


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCC-CcEEEecCCC--CHHHHHHHHhHcC
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGK-RYLIVLDDFE--DMEVCKHLSKVLP  171 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVLDdv~--~~~~~~~l~~~l~  171 (398)
                        +...+|-.....   ....+    ..+...+..+ ..+++||+++  +.+..+.|...+.
T Consensus       526 --~~~lig~~~gyv---g~~~~----~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld  578 (731)
T TIGR02639       526 --VSRLIGAPPGYV---GFEQG----GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD  578 (731)
T ss_pred             --HHHHhcCCCCCc---ccchh----hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence              111122211100   00111    1233444444 4599999999  5566666665554

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.07  E-value=5.9e-05  Score=70.87  Aligned_cols=115  Identities=22%  Similarity=0.372  Sum_probs=80.7

Q ss_pred             CCcccchhhHHHHHHHHhccCCCC-CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDD-QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~-~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +.+.+|+..+..+..++..  .+. -+..|.|+|-.|.|||.+.+++++..  .   ...+|++ +-..++...++..|+
T Consensus         6 ~~v~~Re~qi~~L~~Llg~--~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n-~~ecft~~~lle~IL   77 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGN--NSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLN-CVECFTYAILLEKIL   77 (438)
T ss_pred             cCccchHHHHHHHHHHhCC--CCcccceeEEEeccCCCchhHHHHHHHhhc--C---Ccceeee-hHHhccHHHHHHHHH
Confidence            5688999999999999976  333 46677999999999999999999983  2   2357988 888899999999999


Q ss_pred             HHcCCCCCCCCCcCC--CchHHHHHHHHH--HHh--CCCcEEEecCCCCH
Q 015891          117 KRLGVDDGTTNSFEG--QGLAFLDYVLQQ--QLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~--~~~~~~~~~l~~--~l~--~k~~LlVLDdv~~~  160 (398)
                      .+++..+......+.  .........+.+  ...  ++.++||||+++..
T Consensus        78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l  127 (438)
T KOG2543|consen   78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL  127 (438)
T ss_pred             HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence            998743322211111  111222222222  111  35899999999844

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.07  E-value=2.5e-05  Score=83.49  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=39.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++||+.++.++.+.|..    .....+.++|++|+|||+||+.++..
T Consensus       178 ~~vigr~~ei~~~i~iL~r----~~~~n~lL~G~pGvGKT~l~~~la~~  222 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQR  222 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhc----CCcCceEEECCCCCCHHHHHHHHHHH
Confidence            6799999999999999965    34556779999999999999999887

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.07  E-value=5.9e-06  Score=74.18  Aligned_cols=123  Identities=16%  Similarity=0.076  Sum_probs=69.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ...+++.|+|++|.||||+.+.+..-   .-.+...+++. ...  ........++..++..+...  ...+........
T Consensus        28 ~~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vp-a~~--~~~~~~~~il~~~~l~d~~~--~~lS~~~~e~~~   99 (222)
T cd03285          28 GKSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVP-CDS--ADIPIVDCILARVGASDSQL--KGVSTFMAEMLE   99 (222)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcC-ccc--EEEeccceeEeeeccccchh--cCcChHHHHHHH
Confidence            35679999999999999999987532   00111112222 110  11112334444455443221  124556666666


Q ss_pred             HHHHH--hCCCcEEEecCC---CCH---HHH-HHHHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891          141 LQQQL--IGKRYLIVLDDF---EDM---EVC-KHLSKVLPRGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       141 l~~~l--~~k~~LlVLDdv---~~~---~~~-~~l~~~l~~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +...+  ..++-|++||++   ++.   ... ..+...+....++.+|+|||..++...+
T Consensus       100 ~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~  159 (222)
T cd03285         100 TAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALA  159 (222)
T ss_pred             HHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHh
Confidence            76777  568999999999   533   111 1111222223478999999987776644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.06  E-value=0.00012  Score=70.72  Aligned_cols=141  Identities=18%  Similarity=0.265  Sum_probs=86.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ....+.|||+.|.|||.|++++.+.  ..........+. ++    .......++..+...              ....+
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y-~~----se~f~~~~v~a~~~~--------------~~~~F  170 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVY-LT----SEDFTNDFVKALRDN--------------EMEKF  170 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEe-cc----HHHHHHHHHHHHHhh--------------hHHHH
Confidence            5788999999999999999999987  444444322332 22    223333333332111              12345


Q ss_pred             HHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCCCh
Q 015891          142 QQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLSDQ  206 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~~~  206 (398)
                      ++..  .--++++||++-    ..+.+.+...+.  ...|..||+|++..         .+.+.+ ....++++.|++. 
T Consensus       171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~-~~Gl~~~I~~Pd~-  246 (408)
T COG0593         171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL-EWGLVVEIEPPDD-  246 (408)
T ss_pred             HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH-hceeEEeeCCCCH-
Confidence            5555  456999999983    233445555554  34455899999643         344444 4467899999998 


Q ss_pred             hHHHHHHHhhhCCCCCcchHH
Q 015891          207 ESCWLIYRDSVRDKDAQLKSQ  227 (398)
Q Consensus       207 e~~~~l~~~~~~~~~~~~~~~  227 (398)
                      +....++.+.+.......+++
T Consensus       247 e~r~aiL~kka~~~~~~i~~e  267 (408)
T COG0593         247 ETRLAILRKKAEDRGIEIPDE  267 (408)
T ss_pred             HHHHHHHHHHHHhcCCCCCHH
Confidence            666666666554444444443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.05  E-value=4.9e-05  Score=65.99  Aligned_cols=132  Identities=14%  Similarity=0.130  Sum_probs=79.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-------------------------------ccccceEEE----Eec----
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-------------------------------TQFVPRIWV----CTM----  102 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-------------------------------~~F~~~~~v----~~v----  102 (398)
                      .-.+++|+||+|.|||||.+.+.....-.                               -.|...+|-    ..+    
T Consensus        26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~  105 (259)
T COG4559          26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS  105 (259)
T ss_pred             CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence            45689999999999999999996542100                               012211110    000    


Q ss_pred             -CCcccHHHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhC------CCcEEEecCCCCH----HHHHHHHhHc
Q 015891          103 -SGQKTAESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIG------KRYLIVLDDFEDM----EVCKHLSKVL  170 (398)
Q Consensus       103 -~~~~~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~------k~~LlVLDdv~~~----~~~~~l~~~l  170 (398)
                       ++......+....+...+...-..... ..+++++++..+.+.|.+      .+-.++||++.+.    .+...+.-..
T Consensus       106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR  185 (259)
T COG4559         106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR  185 (259)
T ss_pred             CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence             011123345666666655544332222 378999999999999965      2347899999943    2222222111


Q ss_pred             C-CCCCCEEEEEeCChHHHHHhcC
Q 015891          171 P-RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       171 ~-~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      . ...|+-|+++-||-+++..+++
T Consensus       186 ~la~~g~~V~~VLHDLNLAA~YaD  209 (259)
T COG4559         186 QLAREGGAVLAVLHDLNLAAQYAD  209 (259)
T ss_pred             HHHhcCCcEEEEEccchHHHHhhh
Confidence            1 2346889999999999888643

>PLN03130 ABC transporter C family member; Provisional

Probab=98.05  E-value=3.2e-05  Score=88.06  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=51.3

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+.+++++-.+++++-.++-+||||+++   |.+..+.+...+. ...++++|+++|..+....+   ++++.+
T Consensus      1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~---DrIlVL 1445 (1622)
T PLN03130       1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC---DRILVL 1445 (1622)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC---CEEEEE
Confidence            47889999999999999999999999999   4455555555554 33578999999887766553   444444

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.04  E-value=3e-05  Score=68.60  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      .++++|.|++|+|||||.+.+.
T Consensus        28 ~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          28 KRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEEEECCCCCChHHHHHHHH
Confidence            3789999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.04  E-value=5.8e-05  Score=61.86  Aligned_cols=135  Identities=15%  Similarity=0.231  Sum_probs=80.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecC---------------------------Cc-------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMS---------------------------GQ-------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~---------------------------~~-------  105 (398)
                      +-.+|.|.||+|+|||||..-+...  ....|++  .+|+..-.                           ++       
T Consensus        27 ~GeivtlMGPSGcGKSTLls~~~G~--La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~  104 (213)
T COG4136          27 KGEIVTLMGPSGCGKSTLLSWMIGA--LAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA  104 (213)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhh--cccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCc
Confidence            4568999999999999999988766  4444443  55554100                           00       


Q ss_pred             ----ccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHc-C--CCC
Q 015891          106 ----KTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVL-P--RGY  174 (398)
Q Consensus       106 ----~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l-~--~~~  174 (398)
                          ....+.....+...++..... .+...+++++.+..+.+.|-..+.+++||++.+.   ...+.++... .  ...
T Consensus       105 ~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a  184 (213)
T COG4136         105 TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA  184 (213)
T ss_pred             ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence                012233344555566554322 2334788999999999999999999999999854   2122222221 1  234


Q ss_pred             CCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          175 GERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      |--.|..|||.+-..   ...+++++.
T Consensus       185 giPtv~VTHD~~Dvp---agsrVie~~  208 (213)
T COG4136         185 GIPTVQVTHDLQDVP---AGSRVIEMA  208 (213)
T ss_pred             CCCeEEEecccccCC---CCCeeeeee
Confidence            555666677653221   224556553

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.04  E-value=1.2e-05  Score=71.18  Aligned_cols=122  Identities=15%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ...+++|.|++|.||||+++.+....   -.....+++. ..  ...-.....+...++..+......  +....-...+
T Consensus        28 ~~~~~~l~G~n~~GKstll~~i~~~~---~la~~G~~vp-a~--~~~l~~~d~I~~~~~~~d~~~~~~--S~fs~e~~~~   99 (204)
T cd03282          28 SSRFHIITGPNMSGKSTYLKQIALLA---IMAQIGCFVP-AE--YATLPIFNRLLSRLSNDDSMERNL--STFASEMSET   99 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH---HHHHcCCCcc-hh--hcCccChhheeEecCCccccchhh--hHHHHHHHHH
Confidence            34889999999999999999885431   0000111111 00  000022233333333332111111  1111111112


Q ss_pred             HHH--HhCCCcEEEecCCC---CHHH-H---HHHHhHcCCCCCCEEEEEeCChHHHHHhc
Q 015891          142 QQQ--LIGKRYLIVLDDFE---DMEV-C---KHLSKVLPRGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       142 ~~~--l~~k~~LlVLDdv~---~~~~-~---~~l~~~l~~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ...  +..++.|+++|++.   +... .   ..+...+. ..++.+|++||+.+++..+.
T Consensus       100 ~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282         100 AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI-KKESTVFFATHFRDIAAILG  158 (204)
T ss_pred             HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHHHhh
Confidence            222  34678999999984   3321 1   11122222 34889999999999887753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.03  E-value=7.3e-05  Score=64.73  Aligned_cols=60  Identities=13%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             CCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891          131 GQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       131 ~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~  190 (398)
                      .+.++.++..+.+.+.    .++-++++|++.   |....+.+...+.  ...|..+|++||+.+....
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~  163 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFEN  163 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence            5778888888888874    578899999998   4433333333332  2236789999999877653

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.5e-05  Score=77.86  Aligned_cols=130  Identities=16%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC---------------CCc--cccceEEEEe--------cC------CcccHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD---------------VKT--QFVPRIWVCT--------MS------GQKTAES  110 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~---------------~~~--~F~~~~~v~~--------v~------~~~~~~~  110 (398)
                      .-.-|+|+|.+|+|||||++.+...-.               +..  -++...|+..        +.      ......+
T Consensus       363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE  442 (573)
T COG4987         363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE  442 (573)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence            345789999999999999999974310               011  1112222220        00      1112234


Q ss_pred             HHHHHHHHcCCCCC------------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cCCCC
Q 015891          111 IVKRILKRLGVDDG------------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LPRGY  174 (398)
Q Consensus       111 ~~~~il~~l~~~~~------------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~~~~  174 (398)
                      -+..++++.++.+-            .......+++++++-.+.+.+-+...+++||+++   |....+.+... +....
T Consensus       443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~  522 (573)
T COG4987         443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE  522 (573)
T ss_pred             HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence            45566666654321            1112237889999999999999999999999999   44333333333 33556


Q ss_pred             CCEEEEEeCChHHHHHh
Q 015891          175 GERLIITSRNEKLTTEM  191 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~  191 (398)
                      +-++|+.||.-.-...|
T Consensus       523 ~kTll~vTHrL~~le~~  539 (573)
T COG4987         523 GKTLLMVTHRLRGLERM  539 (573)
T ss_pred             CCeEEEEecccccHhhc
Confidence            77888888876555554

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.03  E-value=2.9e-05  Score=75.74  Aligned_cols=108  Identities=17%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .++++.+..++.+...|..      .+.+.++|++|+|||++|+.+++.......|..+.|+. +++..+....+..+  
T Consensus       175 ~d~~i~e~~le~l~~~L~~------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-FHpsySYeDFI~G~--  245 (459)
T PRK11331        175 NDLFIPETTIETILKRLTI------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-FHQSYSYEDFIQGY--  245 (459)
T ss_pred             hcccCCHHHHHHHHHHHhc------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe-ecccccHHHHhccc--
Confidence            5688889999999988864      46788899999999999999988743344566777888 88777755544322  


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~  160 (398)
                          .+... ......+ -....+.++..  .++++||+|++...
T Consensus       246 ----rP~~v-gy~~~~G-~f~~~~~~A~~~p~~~~vliIDEINRa  284 (459)
T PRK11331        246 ----RPNGV-GFRRKDG-IFYNFCQQAKEQPEKKYVFIIDEINRA  284 (459)
T ss_pred             ----CCCCC-CeEecCc-hHHHHHHHHHhcccCCcEEEEehhhcc
Confidence                11000 0000011 11122233332  46899999999943

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=1.4e-05  Score=76.09  Aligned_cols=129  Identities=25%  Similarity=0.359  Sum_probs=80.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCC------CccccceEEEEe-----cCCcccHHHH-----------HHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV------KTQFVPRIWVCT-----MSGQKTAESI-----------VKRILKR  118 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~~v~~-----v~~~~~~~~~-----------~~~il~~  118 (398)
                      +--+.|+|+||+|+|||||.+.+.....-      +.+--.+-|+..     +....+....           .+.-+..
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~  690 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGT  690 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhh
Confidence            45678999999999999999999765211      111111223321     0111112221           2233334


Q ss_pred             cCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          119 LGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       119 l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      +|+....  ....+.++++..+..++....+.+-+||||++.   +.+.++.|...+..-.| -||+.||+..+...
T Consensus       691 fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~G-gVi~VsHDeRLi~e  766 (807)
T KOG0066|consen  691 FGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG-GVIMVSHDERLIVE  766 (807)
T ss_pred             hhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccC-cEEEEecccceeee
Confidence            4443321  122347888888999999989999999999999   45777777777753333 47788888876654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.02  E-value=3.6e-05  Score=86.52  Aligned_cols=154  Identities=15%  Similarity=0.155  Sum_probs=90.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-------------EEecCCc------cc---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-------------VCTMSGQ------KT---------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-------------v~~v~~~------~~---------------  107 (398)
                      .-.+++|.|++|+|||||++.+...........+.++             +.++.+.      .+               
T Consensus       788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~  867 (1394)
T TIGR00956       788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK  867 (1394)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence            3458999999999999999999876320000111111             1112211      00               


Q ss_pred             ------HHHHHHHHHHHcCCCCCCCCCc-----CCCchHHHHHHHHHHHhCCC-cEEEecCCC---CHHHHHHHHhHcC-
Q 015891          108 ------AESIVKRILKRLGVDDGTTNSF-----EGQGLAFLDYVLQQQLIGKR-YLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       108 ------~~~~~~~il~~l~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~k~-~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                            ..+...++++.+++........     ..+.+++++..+...|..++ .+|+||++.   |......+...+. 
T Consensus       868 ~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~  947 (1394)
T TIGR00956       868 SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK  947 (1394)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence                  1123456777777754322211     47889999999999999999 599999999   3333333333332 


Q ss_pred             -CCCCCEEEEEeCChHHH--HHhc-----CCC-ceEEcCCCCCh-hHHHHHHHh
Q 015891          172 -RGYGERLIITSRNEKLT--TEMV-----GEE-NLHQLQPLSDQ-ESCWLIYRD  215 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~--~~~~-----~~~-~~~~l~~L~~~-e~~~~l~~~  215 (398)
                       ...|..||+|||+....  ..+.     ... ++...++.... +.+..+|..
T Consensus       948 la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~ 1001 (1394)
T TIGR00956       948 LADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEK 1001 (1394)
T ss_pred             HHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHh
Confidence             23478999999997632  2221     112 45555555431 346677765

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.02  E-value=0.00083  Score=63.76  Aligned_cols=152  Identities=16%  Similarity=0.208  Sum_probs=85.9

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY  139 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  139 (398)
                      -..++.++|||++|+|||.+|+++++.  ....|   +-++ .+          ++....          .......++.
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~e--lg~~~---i~vs-a~----------eL~sk~----------vGEsEk~IR~  198 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKK--MGIEP---IVMS-AG----------ELESEN----------AGEPGKLIRQ  198 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHH--cCCCe---EEEE-HH----------HhhcCc----------CCcHHHHHHH
Confidence            356889999999999999999999998  43333   1222 11          111100          0122222333


Q ss_pred             HHHHHH-----hCCCcEEEecCCCCH------------HHH--HHHHhHc---------------CCCCCCEEEEEeCCh
Q 015891          140 VLQQQL-----IGKRYLIVLDDFEDM------------EVC--KHLSKVL---------------PRGYGERLIITSRNE  185 (398)
Q Consensus       140 ~l~~~l-----~~k~~LlVLDdv~~~------------~~~--~~l~~~l---------------~~~~gs~IIiTTR~~  185 (398)
                      .+..+-     ..++++|++||++..            .+.  ..|...+               ....+..||+||.+.
T Consensus       199 ~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp  278 (413)
T PLN00020        199 RYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF  278 (413)
T ss_pred             HHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc
Confidence            333222     357999999999821            111  1122111               123456788888776


Q ss_pred             HHHHH-hcC--C-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          186 KLTTE-MVG--E-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       186 ~v~~~-~~~--~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      +.+.. +..  . +..|   .++..++...+++..+...+..     .....+|++.+.|-|+.
T Consensus       279 d~LDpALlRpGRfDk~i---~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~D  334 (413)
T PLN00020        279 STLYAPLIRDGRMEKFY---WAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPLD  334 (413)
T ss_pred             ccCCHhHcCCCCCCcee---CCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCch
Confidence            54322 111  1 3333   3566677778887777665432     24677788888888864

>TIGR01069 mutS2 MutS2 family protein

Probab=98.02  E-value=4.6e-06  Score=87.76  Aligned_cols=44  Identities=18%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             CCCcEEEecCCC---CHHHHHHHH-hHcC--CCCCCEEEEEeCChHHHHH
Q 015891          147 GKRYLIVLDDFE---DMEVCKHLS-KVLP--RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       147 ~k~~LlVLDdv~---~~~~~~~l~-~~l~--~~~gs~IIiTTR~~~v~~~  190 (398)
                      .++.|+++|++.   |......+. ..+.  ...|+.+|+|||+..+...
T Consensus       401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~  450 (771)
T TIGR01069       401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL  450 (771)
T ss_pred             CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            478999999998   343333332 1221  2358899999999887654

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.02  E-value=0.00011  Score=77.68  Aligned_cols=177  Identities=16%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             CCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      .++.|.+...+.|.+.+...         ..-...+-+.++|++|+|||+||+++++.  ....|     +. +...   
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~-v~~~---  521 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IA-VRGP---  521 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EE-EehH---
Confidence            56788888888887766420         01234566899999999999999999987  33333     22 2211   


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--------------HHHHHHHhHcC---
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--------------EVCKHLSKVLP---  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--------------~~~~~l~~~l~---  171 (398)
                           +++...          -......+...+...-...+.+|+||+++..              .....+...+.   
T Consensus       522 -----~l~~~~----------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~  586 (733)
T TIGR01243       522 -----EILSKW----------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ  586 (733)
T ss_pred             -----HHhhcc----------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence                 111110          0112223344455555667899999998632              11122222232   


Q ss_pred             CCCCCEEEEEeCChHHHHHh-c---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          172 RGYGERLIITSRNEKLTTEM-V---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      ...+..||.||...+..... .   ..+..+.+++.+. ++...+|+..........+.    ....+++.+.|..-|
T Consensus       587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~-~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~sga  659 (733)
T TIGR01243       587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE-EARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYTGA  659 (733)
T ss_pred             CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH-HHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCCHH
Confidence            22355677777666544321 1   2366788866665 77777877554332211111    356677778876643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.02  E-value=1.4e-05  Score=76.59  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=79.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC-CCccccceEEEEe----c--CCcccHHHHHHHHHH--------------HcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQFVPRIWVCT----M--SGQKTAESIVKRILK--------------RLG  120 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~v~~----v--~~~~~~~~~~~~il~--------------~l~  120 (398)
                      ..-++++.|++|+||||+++.++.-.. .... ...+-+++    +  ..+.+...++.....              -|.
T Consensus       366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~  444 (591)
T COG1245         366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN  444 (591)
T ss_pred             cceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence            467999999999999999999985411 0111 11111110    1  112233444433333              333


Q ss_pred             CCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcC
Q 015891          121 VDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       121 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      +..- +..-.++++++-++..++..|....-|.+||++.   |.++.-.....++   .+.+...+|.-||--+...+.+
T Consensus       445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsD  524 (591)
T COG1245         445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSD  524 (591)
T ss_pred             hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhc
Confidence            3221 1222347889999999999999999999999998   4444333333332   3456778888998877766543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.01  E-value=8e-05  Score=76.66  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=46.0

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+++++++-.+++++-.++-++||||+.   |.+....+...+. ...+.++|+.+|.......   .++++.++
T Consensus       464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~---aD~IiVl~  537 (567)
T COG1132         464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN---ADRIIVLD  537 (567)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh---CCEEEEEE
Confidence            347889999999999999999999999999   4444444444442 1233355556665544443   34555553

>PRK08116 hypothetical protein; Validated

Probab=98.01  E-value=3e-05  Score=71.69  Aligned_cols=102  Identities=21%  Similarity=0.263  Sum_probs=57.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~  142 (398)
                      ...+.|+|.+|+|||.||.++++.  +......+++++       ...++..+...+.....       ..    ...+.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~-------~~~ll~~i~~~~~~~~~-------~~----~~~~~  173 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN-------FPQLLNRIKSTYKSSGK-------ED----ENEII  173 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE-------HHHHHHHHHHHHhcccc-------cc----HHHHH
Confidence            346899999999999999999997  333323345554       33344444443321110       11    11233


Q ss_pred             HHHhCCCcEEEecCCC----CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          143 QQLIGKRYLIVLDDFE----DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~----~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      +.+. ..-||||||+.    +....+.+...+.  ...+..+||||...
T Consensus       174 ~~l~-~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        174 RSLV-NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             HHhc-CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            3333 33599999994    2222233433443  23466788888643

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.00  E-value=8.2e-06  Score=72.27  Aligned_cols=22  Identities=27%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+++|+|++|+|||||++.+..
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHH
Confidence            7899999999999999999973

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.00  E-value=3.3e-05  Score=82.80  Aligned_cols=45  Identities=24%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++||+.++.++.+.|..    .....+.++|++|+|||+++..+++.
T Consensus       173 ~~~igr~~ei~~~~~~l~r----~~~~n~lL~G~pGvGKT~l~~~la~~  217 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSR----RTKNNPVLIGEPGVGKTAIVEGLAQR  217 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHH
Confidence            5699999999999999965    34455668999999999999999877

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.99  E-value=5.4e-05  Score=79.41  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=38.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++||++++.++.+.|..    ....-+.|+|++|+|||++|+.+++.
T Consensus       186 ~~liGR~~ei~~~i~iL~r----~~~~n~LLvGppGvGKT~lae~la~~  230 (758)
T PRK11034        186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999998875    23345578999999999999999875

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.99  E-value=4.2e-05  Score=86.68  Aligned_cols=133  Identities=14%  Similarity=0.197  Sum_probs=84.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe-----------------cCCcc-----------c-----
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT-----------------MSGQK-----------T-----  107 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~-----------------v~~~~-----------~-----  107 (398)
                      ..-..|+|+|..|+|||||++.+++-  +.  ..+.++++.                 +.+++           +     
T Consensus      1243 ~~GekvaIvGrSGsGKSTLl~lL~rl--~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~ 1318 (1490)
T TIGR01271      1243 EGGQRVGLLGRTGSGKSTLLSALLRL--LS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW 1318 (1490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhh--cC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCC
Confidence            35668999999999999999999875  21  233333321                 11110           1     


Q ss_pred             HHHHHHHHHHHcCCCC-----------C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          108 AESIVKRILKRLGVDD-----------G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~-----------~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                      ..+-+...++..++..           . .......+.+++++-.+++++-.++-+||||++.   |.+....+...+. 
T Consensus      1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271      1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred             CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1223344444443321           0 0111236889999999999999999999999999   4455455555554 


Q ss_pred             CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          172 RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..++++||++||..+....+   ++++.|
T Consensus      1399 ~~~~~TvI~IaHRl~ti~~~---DrIlvL 1424 (1490)
T TIGR01271      1399 SFSNCTVILSEHRVEALLEC---QQFLVI 1424 (1490)
T ss_pred             HcCCCEEEEEecCHHHHHhC---CEEEEE
Confidence            34578999999987665543   455555

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=8e-05  Score=75.52  Aligned_cols=56  Identities=13%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC-CCCCCEEEEEeCCh
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP-RGYGERLIITSRNE  185 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~-~~~gs~IIiTTR~~  185 (398)
                      ..+++++++..|+++|-.+|.+||||+.++   .+....+...+. ...+-+||++.|.-
T Consensus       604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRL  663 (716)
T KOG0058|consen  604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRL  663 (716)
T ss_pred             cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence            488999999999999999999999999994   344445555554 22345566555543

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.99  E-value=4.5e-05  Score=68.21  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=42.1

Q ss_pred             CCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           34 SKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++.+.++|.+...+.|.+-...........-+.+||..|+|||+|++++.+.
T Consensus        23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~   75 (249)
T PF05673_consen   23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE   75 (249)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence            44557899999999888775444324456778889999999999999999876

>PLN03232 ABC transporter C family member; Provisional

Probab=97.99  E-value=0.0001  Score=83.65  Aligned_cols=129  Identities=12%  Similarity=0.106  Sum_probs=76.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-c-ccceEEEEecCCc-----------------ccHHHHHHHHHHHcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-Q-FVPRIWVCTMSGQ-----------------KTAESIVKRILKRLGV  121 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~-F~~~~~v~~v~~~-----------------~~~~~~~~~il~~l~~  121 (398)
                      ..-..++|+|+.|+|||||++.+........ . ....-.+.++++.                 .+ .+...+.++..++
T Consensus       641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~-~e~~~~vl~~~~L  719 (1495)
T PLN03232        641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFE-SERYWRAIDVTAL  719 (1495)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccC-HHHHHHHHHHhCC
Confidence            3457899999999999999999987622111 1 1101112223322                 12 1223334433332


Q ss_pred             CC-------C-----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHH-HhHcC-CCCCCEEEEEeCC
Q 015891          122 DD-------G-----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHL-SKVLP-RGYGERLIITSRN  184 (398)
Q Consensus       122 ~~-------~-----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l-~~~l~-~~~gs~IIiTTR~  184 (398)
                      ..       .     .......+++++++..+++++-.++-+++|||+.+   ....+.+ ...+. ..++.++|++||+
T Consensus       720 ~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~  799 (1495)
T PLN03232        720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ  799 (1495)
T ss_pred             HHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECC
Confidence            11       1     11223488999999999999999999999999993   3322222 22232 2246677778887


Q ss_pred             hHHHHH
Q 015891          185 EKLTTE  190 (398)
Q Consensus       185 ~~v~~~  190 (398)
                      .+....
T Consensus       800 ~~~l~~  805 (1495)
T PLN03232        800 LHFLPL  805 (1495)
T ss_pred             hhhHHh
Confidence            766554

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=97.99  E-value=1.7e-05  Score=75.11  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=79.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc---eEEE-----Ee-cC----Cccc-------------HHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP---RIWV-----CT-MS----GQKT-------------AESIVK  113 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~---~~~v-----~~-v~----~~~~-------------~~~~~~  113 (398)
                      .--++.|+|.+|+||||+.+++........  .|..   .+-+     .. +.    ..++             ......
T Consensus       408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av  487 (593)
T COG2401         408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV  487 (593)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence            345889999999999999999966521111  1111   0000     00 00    1111             112234


Q ss_pred             HHHHHcCCCCCCC---CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891          114 RILKRLGVDDGTT---NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN  184 (398)
Q Consensus       114 ~il~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~  184 (398)
                      .+++..|+.+...   ...+++.++.-+..|++.++.++-+++.|+..   |......+...+.   ...|.++++.||.
T Consensus       488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr  567 (593)
T COG2401         488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR  567 (593)
T ss_pred             HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            5666666655322   22237888889999999999999999999987   3322222222222   3468899999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      +++...+
T Consensus       568 pEv~~AL  574 (593)
T COG2401         568 PEVGNAL  574 (593)
T ss_pred             HHHHhcc
Confidence            9988876

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.99  E-value=1.4e-05  Score=71.26  Aligned_cols=121  Identities=17%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH--HHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF--LDYV  140 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~--~~~~  140 (398)
                      .+.+.|+|++|+|||||.+.+...... .  ....|+. ... .. ...+.++...++........  .+....  .+..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~-a~~-~~-~~~~d~i~~~l~~~~si~~~--~S~f~~el~~l~  100 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVP-ADS-AT-IGLVDKIFTRMSSRESVSSG--QSAFMIDLYQVS  100 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeE-cCC-cE-EeeeeeeeeeeCCccChhhc--cchHHHHHHHHH
Confidence            488999999999999999998632100 0  0111111 000 00 00111111222211111000  111111  1222


Q ss_pred             HHHHHhCCCcEEEecCCCC---HHH-HH----HHHhHcCCC-CCCEEEEEeCChHHHHHh
Q 015891          141 LQQQLIGKRYLIVLDDFED---MEV-CK----HLSKVLPRG-YGERLIITSRNEKLTTEM  191 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~---~~~-~~----~l~~~l~~~-~gs~IIiTTR~~~v~~~~  191 (398)
                      +...+..++.|++||++..   ... ..    .+......+ .+..+|+|||+.+++...
T Consensus       101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            2333457899999999983   221 11    222222221 245899999999887764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.99  E-value=0.00016  Score=64.63  Aligned_cols=179  Identities=16%  Similarity=0.234  Sum_probs=98.7

Q ss_pred             CCCCCCcccchhhHHH---HHHHHhcc--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           34 SKPPANVHGFANEELH---LQKLLSNR--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~---l~~~L~~~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      .+.-+++||.++....   |.+.|...  -+...++-|..+|++|.|||.+|+++++.  .+-.|     +. +.    .
T Consensus       117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~-vk----a  184 (368)
T COG1223         117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LL-VK----A  184 (368)
T ss_pred             cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EE-ec----h
Confidence            3444789998876654   55555541  13346889999999999999999999998  33222     22 11    1


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--------------HHHHHHHhHcC---
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--------------EVCKHLSKVLP---  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--------------~~~~~l~~~l~---  171 (398)
                      .+++   -+..|           .+..+......++-..-++++.+|+.+..              +..+.|..-+.   
T Consensus       185 t~li---GehVG-----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~  250 (368)
T COG1223         185 TELI---GEHVG-----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK  250 (368)
T ss_pred             HHHH---HHHhh-----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc
Confidence            1111   11111           22233334444444567999999999822              33334443443   


Q ss_pred             CCCCCEEEEEeCChHHHHHhcCC--CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          172 RGYGERLIITSRNEKLTTEMVGE--ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~~~~~~--~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .+.|...|-.|.+.+++......  ...++.. |+.+++..+++......-....+.    ..+.++++..|++
T Consensus       251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~-LP~~eEr~~ile~y~k~~Plpv~~----~~~~~~~~t~g~S  319 (368)
T COG1223         251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFK-LPNDEERLEILEYYAKKFPLPVDA----DLRYLAAKTKGMS  319 (368)
T ss_pred             cCCceEEEeecCChhhcCHHHHhhhhheeeee-CCChHHHHHHHHHHHHhCCCcccc----CHHHHHHHhCCCC
Confidence            34576677777776665443111  3345553 444466666666533221111111    3455666666665

>PLN03130 ABC transporter C family member; Provisional

Probab=97.98  E-value=6.3e-05  Score=85.67  Aligned_cols=130  Identities=13%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccceEEEEecCCc-----------------ccHHHHHHHHHHHcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVPRIWVCTMSGQ-----------------KTAESIVKRILKRLGV  121 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~v~~v~~~-----------------~~~~~~~~~il~~l~~  121 (398)
                      ..-..++|+|+.|+|||||++.+........  .....-.+.++++.                 .+ .+...+.++..++
T Consensus       641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d-~e~y~~vl~a~~L  719 (1622)
T PLN03130        641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFD-PERYERAIDVTAL  719 (1622)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCccc-HHHHHHHHHHhCc
Confidence            4567899999999999999999987622111  11111112222221                 22 2233344433322


Q ss_pred             CC---------C---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHH-HhHcC-CCCCCEEEEEeCC
Q 015891          122 DD---------G---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHL-SKVLP-RGYGERLIITSRN  184 (398)
Q Consensus       122 ~~---------~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l-~~~l~-~~~gs~IIiTTR~  184 (398)
                      ..         .   .......+++++++..+++++-.++-+++|||+.+   ....+.+ ...+. ..++.++|++||.
T Consensus       720 ~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~  799 (1622)
T PLN03130        720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ  799 (1622)
T ss_pred             HHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECC
Confidence            11         0   12233488999999999999999999999999993   3322222 22232 1246778888888


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      .+....+
T Consensus       800 l~~l~~a  806 (1622)
T PLN03130        800 LHFLSQV  806 (1622)
T ss_pred             HhHHHhC
Confidence            7766553

>PLN03140 ABC transporter G family member; Provisional

Probab=97.98  E-value=4.6e-05  Score=85.71  Aligned_cols=154  Identities=13%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE--------------EEecCCc------cc--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW--------------VCTMSGQ------KT--------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~--------------v~~v~~~------~~--------------  107 (398)
                      .-.+++|.|++|+|||||++.+...... ....+.++              +.++.+.      .+              
T Consensus       905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~  983 (1470)
T PLN03140        905 PGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLP  983 (1470)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCC
Confidence            3468999999999999999999876320 00111111              1111111      00              


Q ss_pred             -------HHHHHHHHHHHcCCCCCCCCC------cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891          108 -------AESIVKRILKRLGVDDGTTNS------FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP  171 (398)
Q Consensus       108 -------~~~~~~~il~~l~~~~~~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~  171 (398)
                             ..+...++++.+++.......      ...+++++++..+...|..++-+|+||++.   |......+...+.
T Consensus       984 ~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~ 1063 (1470)
T PLN03140        984 KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063 (1470)
T ss_pred             CCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence                   012245677777775422221      247899999999999999999999999999   3333333333332


Q ss_pred             --CCCCCEEEEEeCChHH--HHHhc-----C-CCceEEcCCCCC-hhHHHHHHHhh
Q 015891          172 --RGYGERLIITSRNEKL--TTEMV-----G-EENLHQLQPLSD-QESCWLIYRDS  216 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v--~~~~~-----~-~~~~~~l~~L~~-~e~~~~l~~~~  216 (398)
                        ...|..||+|||+...  ...+.     . ..+++..+++.. ...+..+|...
T Consensus      1064 ~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~ 1119 (1470)
T PLN03140       1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAI 1119 (1470)
T ss_pred             HHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhc
Confidence              2347899999999763  33221     1 123444445432 13467777764

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.98  E-value=5.4e-05  Score=63.94  Aligned_cols=119  Identities=23%  Similarity=0.192  Sum_probs=59.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCC---CCCcCCCchHH-HHHH
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT---TNSFEGQGLAF-LDYV  140 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~~-~~~~  140 (398)
                      ++.|+|++|+||||++..+...  ....-..++|+. ........................   ........... ....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVD-IEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKA   77 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEE-CCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHH
Confidence            3689999999999999999876  322333456666 443322111110011111110000   00000111211 1122


Q ss_pred             HHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891          141 LQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP--RGYGERLIITSRNEK  186 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--~~~gs~IIiTTR~~~  186 (398)
                      .......+.-++|+|++...             ...+.+.....  ...+..+|+|++...
T Consensus        78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  138 (165)
T cd01120          78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS  138 (165)
T ss_pred             HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence            33444567889999999832             11233333332  234888999998764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.97  E-value=0.00018  Score=68.64  Aligned_cols=164  Identities=13%  Similarity=0.116  Sum_probs=87.5

Q ss_pred             Cccc-chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           39 NVHG-FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        39 ~~vG-R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .++| -+..++.|...+..   ..-...+.++|+.|+||||+|+.+.+...-........    .....+.    ..+..
T Consensus         6 ~i~~~q~~~~~~L~~~~~~---~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~----cg~C~~c----~~~~~   74 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAK---NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP----CGTCTNC----KRIDS   74 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----CCcCHHH----HHHhc
Confidence            4667 66677778887753   23466779999999999999999976511011000000    0000000    00000


Q ss_pred             HcCCCCCC-C-CCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HH
Q 015891          118 RLGVDDGT-T-NSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KL  187 (398)
Q Consensus       118 ~l~~~~~~-~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v  187 (398)
                       -..++-. . +.......++.+..+...    ..+++-++|+|+++  +....+.|...+.. ..++.+|++|.+. .+
T Consensus        75 -~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l  153 (329)
T PRK08058         75 -GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI  153 (329)
T ss_pred             -CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence             0000000 0 000012233333332221    23456789999998  44566677777753 3466677777654 45


Q ss_pred             HHHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891          188 TTEMVGEENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      ...+......+++.+++. +.....+.+
T Consensus       154 l~TIrSRc~~i~~~~~~~-~~~~~~L~~  180 (329)
T PRK08058        154 LPTILSRCQVVEFRPLPP-ESLIQRLQE  180 (329)
T ss_pred             cHHHHhhceeeeCCCCCH-HHHHHHHHH
Confidence            555556678999999998 545554543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-21
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-19
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  104 bits (261), Expect = 2e-24
 Identities = 61/401 (15%), Positives = 129/401 (32%), Gaps = 97/401 (24%)

Query: 19  DKSKPEETNVPKVSKSK------PPANV---HGFANEELHLQKLLSNRGTDDQFRAIGVV 69
             S      + +  +           NV     +      L +L   +        + + 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-------VLID 156

Query: 70  GVAGVGKTTLCQRIFHKPDVKTQFVPRI-WVCTMSGQKTAESIVKRILKRLGVD------ 122
           GV G GKT +   +     V+ +   +I W+  +    + E++++ +L++L         
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLE-MLQKLLYQIDPNWT 214

Query: 123 ---DGTTNSFEGQGLAFLDYVLQQQLIGKRY---LIVLDDFEDMEVCKHL---SKVLPRG 173
              D ++N      +  +   L++ L  K Y   L+VL + ++ +         K+L   
Sbjct: 215 SRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--- 269

Query: 174 YGERLIITSRNEKLTTEMVGEENLH-----QLQPLSDQESC-----WLIYRDSVRDKDAQ 223
                 +T+R +++T  +      H         L+  E       +L      R +D  
Sbjct: 270 ------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQD-- 317

Query: 224 LKSQARKD--LEEKL--EKLQG-----QNEDAVNFPSSKQLVEE-LGKLQGENTKLMERK 273
           L  +          +  E ++       N   VN      ++E  L  L+    + M  +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 274 RSILRDSANLPNSKQL--------EEEVEK-LQGQITKMIEEKRAK---------QREQR 315
            S+   SA++P +  L        + +V   +       + EK+ K           E +
Sbjct: 378 LSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 316 KNAEELKRKCGGLPLAAKLLGEIKAQEELRRKEKLLKDILD 356
              E          L   ++      +     + L+   LD
Sbjct: 437 VKLENEYA------LHRSIVDHYNIPKTF-DSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 8e-10
 Identities = 53/405 (13%), Positives = 114/405 (28%), Gaps = 119/405 (29%)

Query: 73  GVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQ 132
            +        I    D  +  +   W          E +V++      V++    +++  
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQKF-----VEEVLRINYK-- 92

Query: 133 GLAFLDYVLQQQ-----LIGKRYLIVLDD-------FEDMEVC---------KHLSKVLP 171
              FL   ++ +     ++ + Y+   D        F    V          + L ++ P
Sbjct: 93  ---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 172 R---------GYGER-LII-TSRNEKLTTEM--------VGEEN-----LHQLQPLSDQE 207
                     G G+  + +    + K+  +M        +   N     L  LQ L  Q 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 208 SCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE-------------DAVNFPSSKQ 254
                 R              + +L   L+    +N              +A N  S K 
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKI 268

Query: 255 LVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKR---AKQ 311
           L+          T    R + +      L  +      ++     +T   +E +    K 
Sbjct: 269 LL---------TT----RFKQVTDF---LSAATTTHISLDHHSMTLTP--DEVKSLLLKY 310

Query: 312 REQRKNAEELKRK-CGGLPLAAKLLGEIKAQEELRRKEKLLKDILDEIERVVAA--NRRP 368
            + R   ++L R+     P    ++ E   ++ L   +       D++  ++ +  N   
Sbjct: 311 LDCR--PQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 369 EPETQEQ---------DAQTPA-------TEGESNSVEPTGSIVN 397
             E ++           A  P         +   + V     +VN
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVN 409

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 93.7 bits (233), Expect = 6e-21
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 23/233 (9%)

Query: 5   SQNGEIGGSSSDGGDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFR 64
           S +G+   S      ++   E  VP+      P            +Q+ LS      +  
Sbjct: 96  SSSGKDSVSGITSYVRTVLCEGGVPQ-----RPVVFVTRKKLVNAIQQKLSK--LKGEPG 148

Query: 65  AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESI--VKRILKRLG 120
            + + G+AG GK+ L         +     P    WV  +  Q  +  +  ++ +  RL 
Sbjct: 149 WVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKSGLLMKLQNLCTRLD 207

Query: 121 VDDGTTNSFEGQGLAFLDYVLQQQLIGK--RYLIVLDDFEDMEVCKHLSKVLPRGYGERL 178
            D+  +       +      L+  ++ K  R L++LDD  D  V K            ++
Sbjct: 208 QDESFSQR-LPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDS------QCQI 260

Query: 179 IITSRNEKLTTEMVGEE-NLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARK 230
           ++T+R++ +T  ++G +  +     L  ++    I    V  K A L  QA  
Sbjct: 261 LLTTRDKSVTDSVMGPKYVVPVESSLGKEK-GLEILSLFVNMKKADLPEQAHS 312

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 89.3 bits (221), Expect = 2e-19
 Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 13/235 (5%)

Query: 3   QVSQNGEIGGSSSDGGDKSKPEETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQ 62
                 ++          S+        +         +        + K L      D 
Sbjct: 93  FAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDS 152

Query: 63  FRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVPRIWVC-TMSGQKTAESIVKRILKRL 119
           F  + + G AG GK+ +  +   K D  +   +   +W+  + +  K+   +   IL  L
Sbjct: 153 FF-LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211

Query: 120 GVDDGTTN--SFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFEDMEVCKHLSKVLPRGYGE 176
             +D   N  S E      L  ++   LI     L V DD    E  +   ++       
Sbjct: 212 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQEL-----RL 266

Query: 177 RLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDA-QLKSQARK 230
           R ++T+R+ +++          ++  L   E    +    +      + +    K
Sbjct: 267 RCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNK 321

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 31/246 (12%)

Query: 2   GQVSQNGEIGGSSSDGGDKSKPE----ETNVPKVSKSKPPANVHGFANEELHLQKLLSNR 57
             +       G  +DGG  S       E  VP+      P            +Q+ L   
Sbjct: 89  SGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQ-----RPVIFVTRKKLVHAIQQKLWK- 142

Query: 58  GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR--IWVCTMSGQKTAESIVKRI 115
             + +   + + G+AG GK+ L         +          WV    G++    ++ ++
Sbjct: 143 -LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV--SIGKQDKSGLLMKL 199

Query: 116 ---LKRLGVDDGTT----NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSK 168
                RL  ++  +     + E         +L++     R L++LDD  D  V K    
Sbjct: 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKH---PRSLLILDDVWDPWVLKAFDN 256

Query: 169 VLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQA 228
                   ++++T+R++ +T  ++G +++  ++    +E    I    V  K   L ++A
Sbjct: 257 QC------QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEA 310

Query: 229 RKDLEE 234
              ++E
Sbjct: 311 HSIIKE 316

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 220  KDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRD 279
            +  +   +    LE K+ +LQ + ++       K L+E++  L+   +   E+ RS +  
Sbjct: 914  RSVERYKKLHIGLENKIMQLQRKIDEQNK--EYKSLLEKMNNLEITYSTETEKLRSDVER 971

Query: 280  SANLPNSKQ--------LEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLA 331
                    +        L+EE+ KL+ ++ +   EK+  +    K   E ++        
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL------- 1024

Query: 332  AKLLGEIKAQEELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQ 378
                       EL+ +  LLK   +E+ R +    +   ET E+   
Sbjct: 1025 ---------VSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/169 (10%), Positives = 51/169 (30%), Gaps = 11/169 (6%)

Query: 218  RDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSIL 277
              +   +  Q                +  V      +    + K + +  K+  R     
Sbjct: 862  LREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR--RMMAKRELKKLKIEARSVERY 919

Query: 278  RDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGE 337
            +          LE ++ +LQ +I +  +E ++   +          +   L      +  
Sbjct: 920  KKL-----HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL---RSDVER 971

Query: 338  IKAQE-ELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQTPATEGE 385
            ++  E E +     +  + +EI ++     + + E +  +      + E
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 26/191 (13%)

Query: 176  ERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEK 235
            ER ++  R   LTT +  EE   + + L+  ++        +  +  + + ++R++LE+ 
Sbjct: 1005 ERKLLEERVSDLTTNLAEEE--EKAKNLTKLKNKHESMISELEVRLKKEE-KSRQELEKI 1061

Query: 236  LEKLQGQNEDAVNFPSS-----KQLVEELGKLQGENTKLMERKRSILRDSANLPNSK--- 287
              KL+G++ D     +       +L  +L K + E    + R         N        
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 288  -----QLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQE 342
                  L+E++E  +    K  ++KR    E      EL+            L     Q+
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT----------LDTTATQQ 1171

Query: 343  ELRRKEKLLKD 353
            ELR  +    D
Sbjct: 1172 ELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 27/180 (15%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 214  RDSVRDKDAQLKSQAR--KDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLME 271
             + + + +A+++ +    + L+ + +K+Q Q  D       ++      KLQ E      
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE--QLEEEEAARQKLQLEKVTADG 983

Query: 272  RKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLA 331
            +              K++E+++  ++ Q  K+ +E++  +         L  +       
Sbjct: 984  KI-------------KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 332  AKLLGEIKAQ-EELRRKEKLLKDILDEIERVVAANRRPEPETQEQDAQTPATEGESNSVE 390
             KL  + ++   EL  + K  +    E+E+     R+ E E+ +   Q    + +   ++
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEK---IKRKLEGESSDLHEQIAELQAQIAELK 1087

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 23/98 (23%)

Query: 284 PNSKQLEEE-VEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPLAAKLLGEIKAQE 342
            +    E E + K + +  K ++E  A  +      +E + K      A K   +++   
Sbjct: 77  ADRLTQEPESIRKWREEQRKRLQELDAASKVME---QEWREK------AKK---DLEEWN 124

Query: 343 ELRRKEKLLKDILDEIERVVAANRRPEPET-QEQDAQT 379
           + R+ E+        +E+    NR  +    Q+ DA  
Sbjct: 125 Q-RQSEQ--------VEKNKINNRIADKAFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.96
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.96
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.59
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.53
2fna_A	357	Conserved hypothetical protein; structural genomic	99.49
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.41
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.39
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.39
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.39
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.37
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.33
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.16
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.06
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.97
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.95
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.94
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.93
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.92
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.92
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.92
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.91
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.89
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.88
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.88
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.88
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.86
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.86
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.85
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.85
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.84
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.83
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.83
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.83
1g6h_A	257	High-affinity branched-chain amino acid transport	98.83
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.83
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.82
3bos_A	242	Putative DNA replication factor; P-loop containing	98.82
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.82
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.81
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.8
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.79
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.78
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.78
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.78
3pvs_A	447	Replication-associated recombination protein A; ma	98.77
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.77
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.76
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.75
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.73
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.73
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.72
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.72
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.69
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.68
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.68
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.67
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.65
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.65
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.64
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.64
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.64
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.64
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.63
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.62
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.62
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.62
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.6
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.6
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.59
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.58
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.57
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.56
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.56
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.56
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.56
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.56
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.55
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.55
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.53
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.53
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.49
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.49
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.45
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.43
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.42
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.42
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.36
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.35
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.33
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.33
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.33
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.33
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.32
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.3
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.29
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.28
3co5_A	143	Putative two-component system transcriptional RES	98.27
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.27
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.26
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.25
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.25
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.23
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.22
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.22
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.19
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.19
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.18
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.18
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.16
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.16
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.13
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.13
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.04
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.02
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.02
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.02
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.01
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.0
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.99
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.97
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.96
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.96
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.95
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.94
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.93
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.91
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.89
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.88
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.88
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.88
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.88
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.82
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.8
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.78
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.76
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.76
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.74
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.73
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.72
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.7
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.69
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.67
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.67
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.65
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.57
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.54
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.53
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.52
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.52
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.49
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.47
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.46
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.45
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.45
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.45
2qgz_A	308	Helicase loader, putative primosome component; str	97.45
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.44
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.41
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.4
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.4
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.4
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.38
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.34
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.31
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.29
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.28
3io5_A	333	Recombination and repair protein; storage dimer, i	97.24
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.18
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.15
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.15
2og2_A	359	Putative signal recognition particle receptor; nuc	97.14
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.05
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.0
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.99
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.91
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.88
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.85
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.84
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.83
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.81
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.8
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.78
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.77
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.71
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.69
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.67
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.66
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.63
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.62
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.6
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.57
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.55
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.54
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.52
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.47
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.46
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.46
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.45
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.43
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.42
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.41
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.41
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.39
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.39
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.39
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.35
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.32
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.32
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.32
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.3
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.27
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.26
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.2
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.19
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.17
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.16
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.15
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.14
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.13
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.13
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.11
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.11
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.1
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.08
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.07
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.04
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.02
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.01
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.0
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.0
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.96
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.96
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.95
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.95
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.94
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.94
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.94
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.92
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.91
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.9
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.9
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.9
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.9
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.89
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.87
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.86
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.85
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.82
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.8
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.79
1via_A	175	Shikimate kinase; structural genomics, transferase	95.78
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.75
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.75
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.74
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.73
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.72
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.71
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.69
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.68
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.67
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	95.66
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.65
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.62
2xxa_A	433	Signal recognition particle protein; protein trans	95.61
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.6
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.59
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.59
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.58
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.57
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.57
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.56
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.55
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.55
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.54
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.53
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.52
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.52
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.51
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.5
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.49
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.48
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.47
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.46
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.43
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.39
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.39
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.37
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.36
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.36
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.34
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.33
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.33
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.32
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.32
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.31
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.3
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.27
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.26
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.24
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.18
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.16
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.15
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.1
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.1
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.06
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.03
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.03
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.02
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.01
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.96
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.95
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.92
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.89
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.88
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.88
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.85
3ice_A	422	Transcription termination factor RHO; transcriptio	94.84
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	94.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	94.83
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.82
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.82
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.8
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.79
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.79
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.75
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.74
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	94.72
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.72
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.71
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.68
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.68
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.68
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.67
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.67
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.66
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.66
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.65
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.64
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.62
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.61
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.55
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.51
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.48
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.46
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.46
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.44
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.34
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.3
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	94.26
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	94.25
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.25
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.2
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.19
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.14
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.14
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	94.13
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.1
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.09
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.08
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.08
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.05
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.04
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	93.99
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.98
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	93.94
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.93
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.87
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.86
3end_A	307	Light-independent protochlorophyllide reductase ir	93.86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.85
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	93.82
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.78
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	93.78
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.76
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.76
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.76
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.75
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.74
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	93.73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.72
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.71
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.69
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	93.65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.61
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.61
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.61
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.59
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.57
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.56
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	93.54
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	93.54
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.52
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.51
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.48
3l0o_A	427	Transcription termination factor RHO; helicase, RH	93.48
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.48
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.45
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.45
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.44
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	93.44
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	93.44
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.43
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	93.42
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.41
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.41
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.4
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	93.38
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	93.38
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	93.34
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	93.34
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.32
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.26
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.25
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.24
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.23
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	93.2
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	93.19
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	93.18
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	93.17
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	93.17
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	93.17
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	93.17
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	93.14
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.14
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.13
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.11
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	93.09
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.08
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	93.07
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.04
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.03
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.03
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	93.02
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.0
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.99
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	92.99
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.98
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.96
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	92.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.95
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.95
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	92.94
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	92.94
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.89
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.87
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.84
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.84
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.82
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	92.82
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.81
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	92.78
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.78
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.77
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.73
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.72
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.72
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	92.71
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	92.7
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.68
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	92.67

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=2.7e-38  Score=320.71  Aligned_cols=299  Identities=14%  Similarity=0.089  Sum_probs=211.2

Q ss_pred             ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc--CCCCCccccceEEEEecCCcc--cHHHHHHHHH
Q 015891           41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH--KPDVKTQFVPRIWVCTMSGQK--TAESIVKRIL  116 (398)
Q Consensus        41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~~v~~v~~~~--~~~~~~~~il  116 (398)
                      |||++++++|.++|... .....++|+|+||||+||||||+++|+  +.++..+|+.++|++ +++..  +...++..++
T Consensus       131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~~~il  208 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAPKSTFDLFTDIL  208 (549)
T ss_dssp             CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCSTTHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCCCCHHHHHHHHH
Confidence            59999999999999762 244689999999999999999999997  556889999999998 98875  7889999999


Q ss_pred             HHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          117 KRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK-RYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       117 ~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      .+++....  .....+..+...+...+...|.++ ++||||||||+.+++ .+.    ..+||+||||||+..++..+..
T Consensus       209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~----~~~gs~ilvTTR~~~v~~~~~~  283 (549)
T 2a5y_B          209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA----QELRLRCLVTTRDVEISNAASQ  283 (549)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH----HHTTCEEEEEESBGGGGGGCCS
T ss_pred             HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc----ccCCCEEEEEcCCHHHHHHcCC
Confidence            99986532  112222234566778899999996 999999999998755 222    2379999999999999887633


Q ss_pred             CCceEEcCCCCChhHHHHHHHhh-hCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHh
Q 015891          194 EENLHQLQPLSDQESCWLIYRDS-VRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMER  272 (398)
Q Consensus       194 ~~~~~~l~~L~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~  272 (398)
                      ....|+|++|+. +++|.||.+. ++...   ++...+.+++|+++|+|+||||+.          +|+.+..+  .|+.
T Consensus       284 ~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~----------~g~~l~~~--~w~~  347 (549)
T 2a5y_B          284 TCEFIEVTSLEI-DECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMM----------FFKSCEPK--TFEK  347 (549)
T ss_dssp             CEEEEECCCCCH-HHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHH----------HHTTCCSS--SHHH
T ss_pred             CCeEEECCCCCH-HHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHH----------HHHHhccc--hHHH
Confidence            456899999999 6788888884 44321   356677899999999999999877          56666433  3433


Q ss_pred             HHHHHhhhc-cCCCCCCcchhhhhhHHHHHHHHH-hh-hcc---------------hHhhhHHHHHHHHHh--CCchH--
Q 015891          273 KRSILRDSA-NLPNSKQLEEEVEKLQGQITKMIE-EK-RAK---------------QREQRKNAEELKRKC--GGLPL--  330 (398)
Q Consensus       273 w~~~L~~~~-~lp~~~~~~~~~~~l~~sy~~l~~-e~-cf~---------------~~~~~~~~~~il~~~--g~~~~--  330 (398)
                      + ..+.... ..+...+..    .++.||+.|+. .+ ||.               +..+...-..+|...  |+.+.  
T Consensus       348 ~-~~l~~~l~~~~~~~i~~----~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~  422 (549)
T 2a5y_B          348 M-AQLNNKLESRGLVGVEC----ITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNE  422 (549)
T ss_dssp             H-HHHHHHHHHHCSSTTCC----CSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC------
T ss_pred             H-HHhHHHhhcccHHHHHH----HHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCC
Confidence            2 3333221 223333444    77778887766 33 652               222211113344444  44321  


Q ss_pred             ----------HHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHHHhhcCC
Q 015891          331 ----------AAKLLGEIKAQEELRR----KEKLLKDILDEIERVVAANRRP  368 (398)
Q Consensus       331 ----------~~~~l~~~~~~~~i~~----~~~~mHdll~dm~~~i~~~e~~  368 (398)
                                .+..|.++ +++....    ..+.||||+||+|+++++++..
T Consensus       423 ~~~~~~~~~~~l~~L~~r-sLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          423 EEQLDDEVADRLKRLSKR-GALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             -CCCTHHHHHHHHHTTTB-SSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CCCCHHHHHHHHHHHHHc-CCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence                      25566666 6666521    3589999999999998876643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=6.2e-32  Score=298.19  Aligned_cols=305  Identities=16%  Similarity=0.116  Sum_probs=215.2

Q ss_pred             CCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cccccc-eEEEEecCCcc--cHH
Q 015891           34 SKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQFVP-RIWVCTMSGQK--TAE  109 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~-~~~v~~v~~~~--~~~  109 (398)
                      +.+++.||||++++++|.++|..  .++..++|+|+||||+||||||++++++.+. ..+|.. ++|+. +++..  ...
T Consensus       120 p~~~~~~vgR~~~~~~l~~~l~~--~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~  196 (1249)
T 3sfz_A          120 PQRPVIFVTRKKLVHAIQQKLWK--LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDKSGLL  196 (1249)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHT--TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCHHHHH
T ss_pred             CCCCceeccHHHHHHHHHHHHhh--ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCchHHH
Confidence            34457799999999999999976  4567899999999999999999999987322 344554 56888 88743  344


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHH
Q 015891          110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGK--RYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKL  187 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v  187 (398)
                      ..+..++..++........ .....+.+...++..+.++  ++||||||+|+...++.      ..+||+||||||++.+
T Consensus       197 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~------~~~~~~ilvTtR~~~~  269 (1249)
T 3sfz_A          197 MKLQNLCMRLDQEESFSQR-LPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA------FDNQCQILLTTRDKSV  269 (1249)
T ss_dssp             HHHHHHHHHHTTTCTTCSS-CCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT------TCSSCEEEEEESSTTT
T ss_pred             HHHHHHHHHhhhhcccccC-CCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh------hcCCCEEEEEcCCHHH
Confidence            5567777777654432211 1356677788888888877  99999999999865442      3679999999999998


Q ss_pred             HHHhcCCCceEEcCC-CCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCC
Q 015891          188 TTEMVGEENLHQLQP-LSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGEN  266 (398)
Q Consensus       188 ~~~~~~~~~~~~l~~-L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~  266 (398)
                      +..+.+....+++.+ |+. ++++.||....+...    +...+.+++|+++|+|+||||..          +|+++..+
T Consensus       270 ~~~~~~~~~~~~~~~~l~~-~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~----------~~~~l~~~  334 (1249)
T 3sfz_A          270 TDSVMGPKHVVPVESGLGR-EKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSL----------IGALLRDF  334 (1249)
T ss_dssp             TTTCCSCBCCEECCSSCCH-HHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHH----------HHHHHHHS
T ss_pred             HHhhcCCceEEEecCCCCH-HHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHH----------HHHHhhcC
Confidence            865546678899996 988 668888887543322    22334788999999999999776          66766543


Q ss_pred             chhHHhHHHHHhhhccCCCCCC-------cchhhhhhHHHHHHHHH-hh-hcc----hH----hhhHHHHHHHHHhCCch
Q 015891          267 TKLMERKRSILRDSANLPNSKQ-------LEEEVEKLQGQITKMIE-EK-RAK----QR----EQRKNAEELKRKCGGLP  329 (398)
Q Consensus       267 ~~~~~~w~~~L~~~~~lp~~~~-------~~~~~~~l~~sy~~l~~-e~-cf~----~~----~~~~~~~~il~~~g~~~  329 (398)
                      .   ..|...++.+.+.+...+       .+.....++.||+.|.. ++ ||.    +.    ...+.+..++...+...
T Consensus       335 ~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~  411 (1249)
T 3sfz_A          335 P---NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEV  411 (1249)
T ss_dssp             S---SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHH
T ss_pred             h---hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHH
Confidence            3   457777777764332221       13466789999999988 44 442    21    23334444442211111


Q ss_pred             H-HHHHHhhhhhhhhhh-HHH---HHHHHHHHHHHHHHHhhcC
Q 015891          330 L-AAKLLGEIKAQEELR-RKE---KLLKDILDEIERVVAANRR  367 (398)
Q Consensus       330 ~-~~~~l~~~~~~~~i~-~~~---~~mHdll~dm~~~i~~~e~  367 (398)
                      . .+..|.++ +++... ++.   +.||||+|+++++.+.++.
T Consensus       412 ~~~l~~L~~~-sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~  453 (1249)
T 3sfz_A          412 EDILQEFVNK-SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL  453 (1249)
T ss_dssp             HHHHHHHHHT-TSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred             HHHHHHHHhc-cceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence            2 57777888 888763 333   8999999999999877653

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.96  E-value=2.5e-30  Score=269.09  Aligned_cols=276  Identities=11%  Similarity=0.102  Sum_probs=192.4

Q ss_pred             cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHHHH
Q 015891           40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRILKR  118 (398)
Q Consensus        40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il~~  118 (398)
                      .|||++++++|.++|..  . +..++|+|+||||+||||||++++++.++..+|+. ++|++ +++..+...++..++..
T Consensus       130 ~VGRe~eLeeL~elL~~--~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~~d~~~IL~~Ll~l  205 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLE--L-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKL  205 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHH--C-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCSSSHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhc--c-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCCCCHHHHHHHHHHH
Confidence            49999999999999975  2 34789999999999999999999987557888997 88998 99888877777777665


Q ss_pred             cCCCC---CCCCCc--C-CCchHHHHHHHHHHH---hCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891          119 LGVDD---GTTNSF--E-GQGLAFLDYVLQQQL---IGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT  189 (398)
Q Consensus       119 l~~~~---~~~~~~--~-~~~~~~~~~~l~~~l---~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~  189 (398)
                      ++...   ......  . ....+.....++..+   .++++||||||+|+.+.++.+.      +||+||||||++.++.
T Consensus       206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~------pGSRILVTTRd~~Va~  279 (1221)
T 1vt4_I          206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSCKILLTTRFKQVTD  279 (1221)
T ss_dssp             HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH------SSCCEEEECSCSHHHH
T ss_pred             HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC------CCeEEEEeccChHHHH
Confidence            32211   000000  0 123344556666665   5799999999999987776542      6899999999999886


Q ss_pred             HhcCCCceEEcC------CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhh
Q 015891          190 EMVGEENLHQLQ------PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQ  263 (398)
Q Consensus       190 ~~~~~~~~~~l~------~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l  263 (398)
                      .+. ....|+++      +|+. ++++.||.+.++.....       ...+|   |+|+||||..          +|+.+
T Consensus       280 ~l~-g~~vy~LeL~d~dL~LS~-eEA~eLF~~~~g~~~ee-------L~~eI---CgGLPLALkL----------aGs~L  337 (1221)
T 1vt4_I          280 FLS-AATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQD-------LPREV---LTTNPRRLSI----------IAESI  337 (1221)
T ss_dssp             HHH-HHSSCEEEECSSSSCCCH-HHHHHHHHHHHCCCTTT-------HHHHH---CCCCHHHHHH----------HHHHH
T ss_pred             hcC-CCeEEEecCccccCCcCH-HHHHHHHHHHcCCCHHH-------HHHHH---hCCCHHHHHH----------HHHHH
Confidence            542 22356666      8998 77999999887543211       33333   8899999666          66666


Q ss_pred             cCCchhHHhHHHHHhhhccCCCCCCcchhhhhhHHHHHHHHH-h-h-hcc----hHh----hhHHHHHHHHHhCCc-hH-
Q 015891          264 GENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIE-E-K-RAK----QRE----QRKNAEELKRKCGGL-PL-  330 (398)
Q Consensus       264 ~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~sy~~l~~-e-~-cf~----~~~----~~~~~~~il~~~g~~-~~-  330 (398)
                      ..+...+++|+..       .    .......++.||+.|.. + + ||.    +..    ..+.+..++...|.. .. 
T Consensus       338 r~k~~s~eeW~~~-------~----~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~  406 (1221)
T 1vt4_I          338 RDGLATWDNWKHV-------N----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV  406 (1221)
T ss_dssp             HHSCSSHHHHHHC-------S----CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHH
T ss_pred             hCCCCCHHHHhcC-------C----hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHH
Confidence            5443367788763       1    24556699999999988 6 6 442    222    233444444433321 22 


Q ss_pred             HHHHHhhhhhhhhhh--HHHHHHHHHHHHHH
Q 015891          331 AAKLLGEIKAQEELR--RKEKLLKDILDEIE  359 (398)
Q Consensus       331 ~~~~l~~~~~~~~i~--~~~~~mHdll~dm~  359 (398)
                      .+..|.++ +++...  ...+.||||+++++
T Consensus       407 ~L~eLvdR-SLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          407 VVNKLHKY-SLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             HHHHHHTS-SSSSBCSSSSEEBCCCHHHHHH
T ss_pred             HHHHHHhh-CCEEEeCCCCEEEehHHHHHHh
Confidence            67788888 888773  35689999998865

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.96  E-value=8.7e-29  Score=253.37  Aligned_cols=294  Identities=17%  Similarity=0.112  Sum_probs=197.1

Q ss_pred             CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccccc-ceEEEEecCCccc--HHH
Q 015891           35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQFV-PRIWVCTMSGQKT--AES  110 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~~v~~v~~~~~--~~~  110 (398)
                      .+++.||||+.+++.|.++|..  ..+..++|+|+||||+||||||..++++... ...|. .++|++ ++....  ...
T Consensus       121 ~~~~~~vGR~~~l~~L~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~~~~~  197 (591)
T 1z6t_A          121 QRPVVFVTRKKLVNAIQQKLSK--LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKSGLLM  197 (591)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTT--STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHHHHHH
T ss_pred             CCCCeecccHHHHHHHHHHHhc--ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchHHHHH
Confidence            3457899999999999999975  3456899999999999999999999987333 67785 688988 765422  223


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHH
Q 015891          111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLT  188 (398)
Q Consensus       111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~  188 (398)
                      .+..++..++...... .......+.....+...+.+  +++||||||+|+...++.      ..++++||||||+..++
T Consensus       198 ~l~~l~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~------l~~~~~ilvTsR~~~~~  270 (591)
T 1z6t_A          198 KLQNLCTRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA------FDSQCQILLTTRDKSVT  270 (591)
T ss_dssp             HHHHHHHHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT------TCSSCEEEEEESCGGGG
T ss_pred             HHHHHHHHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH------hcCCCeEEEECCCcHHH
Confidence            3344455555321110 11124566677778888876  789999999999765432      25689999999999877


Q ss_pred             HHhcCCCceEEc---CCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcC
Q 015891          189 TEMVGEENLHQL---QPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGE  265 (398)
Q Consensus       189 ~~~~~~~~~~~l---~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~  265 (398)
                      ..+.  ...+++   ++|+. ++++.||.+..+...    ....+.+.+|+++|+|+|+||..          +|..+..
T Consensus       271 ~~~~--~~~~~v~~l~~L~~-~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~----------~a~~l~~  333 (591)
T 1z6t_A          271 DSVM--GPKYVVPVESSLGK-EKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSL----------IGALLRD  333 (591)
T ss_dssp             TTCC--SCEEEEECCSSCCH-HHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHH----------HHHHHHH
T ss_pred             HhcC--CCceEeecCCCCCH-HHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHH----------HHHHHhc
Confidence            6542  345555   58998 668888887655321    12234788999999999999776          5565543


Q ss_pred             CchhHHhHHHHHhhhccCCCCC-------CcchhhhhhHHHHHHHHH-hh-hc------chH--hhhHHHHHHHHHhCCc
Q 015891          266 NTKLMERKRSILRDSANLPNSK-------QLEEEVEKLQGQITKMIE-EK-RA------KQR--EQRKNAEELKRKCGGL  328 (398)
Q Consensus       266 ~~~~~~~w~~~L~~~~~lp~~~-------~~~~~~~~l~~sy~~l~~-e~-cf------~~~--~~~~~~~~il~~~g~~  328 (398)
                      ..   ..|...++.+.+.+...       ........++.||+.|+. ++ ||      ..+  .....+..++   +..
T Consensus       334 ~~---~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~---~~~  407 (591)
T 1z6t_A          334 FP---NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW---DME  407 (591)
T ss_dssp             ST---TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHH---TCC
T ss_pred             Cc---hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHh---ccC
Confidence            32   35777777666332221       123455688999999988 44 33      222  2222233332   222


Q ss_pred             h---H-HHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHH
Q 015891          329 P---L-AAKLLGEIKAQEELRR----KEKLLKDILDEIERVV  362 (398)
Q Consensus       329 ~---~-~~~~l~~~~~~~~i~~----~~~~mHdll~dm~~~i  362 (398)
                      +   . .+..|.++ +++....    ..+.||||+|+++++.
T Consensus       408 ~~~~~~~l~~L~~~-~Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          408 TEEVEDILQEFVNK-SLLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             HHHHHHHHHHHHHT-TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence            1   1 56777777 7776522    2578999999998876

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.59  E-value=1.7e-14  Score=137.16  Aligned_cols=197  Identities=16%  Similarity=0.179  Sum_probs=128.1

Q ss_pred             CCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc------c
Q 015891           34 SKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK------T  107 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~------~  107 (398)
                      ...++.|+||+.+++.|.+++..    .  +.+.|+|++|+|||||++.+++.  ..     .+|+. +....      +
T Consensus         8 ~~~~~~~~gR~~el~~L~~~l~~----~--~~v~i~G~~G~GKT~Ll~~~~~~--~~-----~~~~~-~~~~~~~~~~~~   73 (350)
T 2qen_A            8 KTRREDIFDREEESRKLEESLEN----Y--PLTLLLGIRRVGKSSLLRAFLNE--RP-----GILID-CRELYAERGHIT   73 (350)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHH----C--SEEEEECCTTSSHHHHHHHHHHH--SS-----EEEEE-HHHHHHTTTCBC
T ss_pred             CCChHhcCChHHHHHHHHHHHhc----C--CeEEEECCCcCCHHHHHHHHHHH--cC-----cEEEE-eecccccccCCC
Confidence            34557899999999999999864    1  79999999999999999999886  21     56666 44322      4


Q ss_pred             HHHHHHHHHHHcCCC--------------CCCCCCcCCCchHHHHHHHHHHHhC-CCcEEEecCCCC---------HHHH
Q 015891          108 AESIVKRILKRLGVD--------------DGTTNSFEGQGLAFLDYVLQQQLIG-KRYLIVLDDFED---------MEVC  163 (398)
Q Consensus       108 ~~~~~~~il~~l~~~--------------~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~---------~~~~  163 (398)
                      ...++..+...+...              .... .............+...... ++.+|||||++.         .+.+
T Consensus        74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~  152 (350)
T 2qen_A           74 REELIKELQSTISPFQKFQSKFKISLNLKFLTL-EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL  152 (350)
T ss_dssp             HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTS-CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhhhceeEEEecceee-ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence            455556565554320              0000 00113344455555555543 499999999985         2445


Q ss_pred             HHHHhHcCCCCCCEEEEEeCChHHHHHh----------cCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHH
Q 015891          164 KHLSKVLPRGYGERLIITSRNEKLTTEM----------VGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDL  232 (398)
Q Consensus       164 ~~l~~~l~~~~gs~IIiTTR~~~v~~~~----------~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~  232 (398)
                      ..+.......++.++|+|++...+...+          .+. ...+++.||+. ++...++.+.+...+....   .+.+
T Consensus       153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~-~e~~~~l~~~~~~~~~~~~---~~~~  228 (350)
T 2qen_A          153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDK-DTSVEFLKRGFREVNLDVP---ENEI  228 (350)
T ss_dssp             HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCH-HHHHHHHHHHHHTTTCCCC---HHHH
T ss_pred             HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHH
Confidence            5555444333578899999876543321          111 34789999999 6677788776543322222   2367


Q ss_pred             HHHHHhcCCCchhhhcc
Q 015891          233 EEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       233 ~~I~~~c~GlPlai~~~  249 (398)
                      ..|++.|+|+|+++..+
T Consensus       229 ~~i~~~tgG~P~~l~~~  245 (350)
T 2qen_A          229 EEAVELLDGIPGWLVVF  245 (350)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHH
Confidence            78999999999987664

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.53  E-value=4.9e-14  Score=137.15  Aligned_cols=203  Identities=17%  Similarity=0.178  Sum_probs=128.7

Q ss_pred             CCCCcccchhhHHHHHHHH-hccCCC--CCeeEEEE--EcCCCChHHHHHHHHHcCCCCCcc-----cc-ceEEEEecCC
Q 015891           36 PPANVHGFANEELHLQKLL-SNRGTD--DQFRAIGV--VGVAGVGKTTLCQRIFHKPDVKTQ-----FV-PRIWVCTMSG  104 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L-~~~~~~--~~~~~v~I--~G~~GiGKTtLa~~v~~~~~~~~~-----F~-~~~~v~~v~~  104 (398)
                      .|+.|+||+.+++.|..++ ......  .....+.|  +|++|+|||||++.+++.  ....     +. ..+|+. +..
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~   96 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVN-AFN   96 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEE-GGG
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEE-CCC
Confidence            4478999999999999998 531112  24556777  999999999999999876  3321     12 246666 556


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCH--------HHHHHHHhHcCC--
Q 015891          105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM--------EVCKHLSKVLPR--  172 (398)
Q Consensus       105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~--------~~~~~l~~~l~~--  172 (398)
                      ..+...++..++..++......    ..........+...+.  +++++|||||++..        +.+..+...+..  
T Consensus        97 ~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~  172 (412)
T 1w5s_A           97 APNLYTILSLIVRQTGYPIQVR----GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP  172 (412)
T ss_dssp             CCSHHHHHHHHHHHHTCCCCCT----TCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred             CCCHHHHHHHHHHHhCCCCCCC----CCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence            6678888999999987653211    1223444555666654  67899999999853        333333333321  


Q ss_pred             --C--CCCEEEEEeCChHHHHHhc--------CCCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHh
Q 015891          173 --G--YGERLIITSRNEKLTTEMV--------GEENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEK  238 (398)
Q Consensus       173 --~--~gs~IIiTTR~~~v~~~~~--------~~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~  238 (398)
                        +  .+..+|+||++..+...+.        .....+.++|++. ++.+.++.+.+..  .....+   .+....|++.
T Consensus       173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~-~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~  248 (412)
T 1w5s_A          173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS-RELYTILEQRAELGLRDTVWE---PRHLELISDV  248 (412)
T ss_dssp             CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHH
T ss_pred             cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH-HHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHH
Confidence              2  3445788887665432211        1123499999999 6688888653221  111111   2366778888


Q ss_pred             cC------CCchhhhcc
Q 015891          239 LQ------GQNEDAVNF  249 (398)
Q Consensus       239 c~------GlPlai~~~  249 (398)
                      |+      |.|..+..+
T Consensus       249 ~~~~~~~~G~p~~~~~l  265 (412)
T 1w5s_A          249 YGEDKGGDGSARRAIVA  265 (412)
T ss_dssp             HCGGGTSCCCHHHHHHH
T ss_pred             HHHhccCCCcHHHHHHH
Confidence            88      999876654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.49  E-value=8.1e-14  Score=132.62  Aligned_cols=196  Identities=17%  Similarity=0.216  Sum_probs=116.8

Q ss_pred             CCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-----cc
Q 015891           33 KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-----KT  107 (398)
Q Consensus        33 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-----~~  107 (398)
                      +...++.|+||+.+++.|.+ +.    .   +++.|+|++|+|||||++.+++.  ...   ..+|+. +...     .+
T Consensus         8 ~~~~~~~~~gR~~el~~L~~-l~----~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~-~~~~~~~~~~~   73 (357)
T 2fna_A            8 PKDNRKDFFDREKEIEKLKG-LR----A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLD-LRKFEERNYIS   73 (357)
T ss_dssp             CCCSGGGSCCCHHHHHHHHH-TC----S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEE-GGGGTTCSCCC
T ss_pred             CCCCHHHhcChHHHHHHHHH-hc----C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEE-chhhccccCCC
Confidence            33456789999999999999 63    2   69999999999999999999886  222   246776 5432     23


Q ss_pred             HHHHHHHHHHHcC------------------CCCCCCC-Cc-----CCCchHHHHHHHHHHHhCCCcEEEecCCCCH---
Q 015891          108 AESIVKRILKRLG------------------VDDGTTN-SF-----EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---  160 (398)
Q Consensus       108 ~~~~~~~il~~l~------------------~~~~~~~-~~-----~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---  160 (398)
                      ....+..+...+.                  ...+... ..     ...........+.+... ++.+|||||++..   
T Consensus        74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~  152 (357)
T 2fna_A           74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL  152 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence            3333333332220                  0000000 00     01223333333332211 4899999999752   


Q ss_pred             ---HHHHHHHhHcCCCCCCEEEEEeCChHHHHHh----------cCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchH
Q 015891          161 ---EVCKHLSKVLPRGYGERLIITSRNEKLTTEM----------VGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS  226 (398)
Q Consensus       161 ---~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~----------~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~  226 (398)
                         ++...+........+.++|+|++.......+          .+. ...+++.||+. +++..++.+.++..+.....
T Consensus       153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~-~e~~~~l~~~~~~~~~~~~~  231 (357)
T 2fna_A          153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR-EEAIEFLRRGFQEADIDFKD  231 (357)
T ss_dssp             TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCH-HHHHHHHHHHHHHHTCCCCC
T ss_pred             CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCH-HHHHHHHHHHHHHcCCCCCc
Confidence               3334444333323478899999987643321          112 35789999999 66788887755321111111


Q ss_pred             HHHHHHHHHHHhcCCCchhhhcc
Q 015891          227 QARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       227 ~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                           ...|++.|+|+|+.+..+
T Consensus       232 -----~~~i~~~t~G~P~~l~~~  249 (357)
T 2fna_A          232 -----YEVVYEKIGGIPGWLTYF  249 (357)
T ss_dssp             -----HHHHHHHHCSCHHHHHHH
T ss_pred             -----HHHHHHHhCCCHHHHHHH
Confidence                 278899999999987664

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.41  E-value=1.9e-12  Score=115.81  Aligned_cols=196  Identities=15%  Similarity=0.120  Sum_probs=110.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .+++||+..++.|..++...   .....+.|+|++|+||||||+.+++.  ....+....+ . .......    ..+..
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~---~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~-~-~~~~~~~----~~~~~   91 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLG---RIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT-P-CGVCDNC----REIEQ   91 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHT---CCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS-C-CSCSHHH----HHHHT
T ss_pred             HHHhCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC-C-CcccHHH----HHHhc
Confidence            56999999999999999751   22358899999999999999999875  2111110000 0 0000000    00000


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCChH-HH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNEK-LT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~  188 (398)
                      ..................... .+...+     ..++.+||+||++  +....+.+...+. ...+..+|+||+... +.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~  170 (250)
T 1njg_A           92 GRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  170 (250)
T ss_dssp             TCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             cCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence            000000000000001111111 111111     2457899999998  4555566665554 345778888887653 22


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      ..+......++++|++. ++...++.+.+.......++   +....|++.|+|.|..+..+
T Consensus       171 ~~l~~r~~~i~l~~l~~-~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~~~~~~~  227 (250)
T 1njg_A          171 VTILSRCLQFHLKALDV-EQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSL  227 (250)
T ss_dssp             HHHHTTSEEEECCCCCH-HHHHHHHHHHHHHTTCCBCH---HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhhhccCCCCCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence            22223456899999998 66888888755433322222   35678999999999987663

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.39  E-value=1e-11  Score=119.69  Aligned_cols=204  Identities=15%  Similarity=0.216  Sum_probs=132.0

Q ss_pred             CCCCCcccchhhHHHHHHHHhcc--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCcccHHHH
Q 015891           35 KPPANVHGFANEELHLQKLLSNR--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~~~~~  111 (398)
                      ..|+.++||+.+++.+..++...  ......+.+.|+|++|+|||||++.+++.  ..... ...+++. .....+...+
T Consensus        14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~-~~~~~~~~~~   90 (389)
T 1fnn_A           14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYIN-GFIYRNFTAI   90 (389)
T ss_dssp             CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEE-TTTCCSHHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEe-CccCCCHHHH
Confidence            34478999999999999988752  11222348999999999999999999876  32221 2345665 6666777888


Q ss_pred             HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCC--HHHHHHHHhHcCC--C---CCCEEEEEe
Q 015891          112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFED--MEVCKHLSKVLPR--G---YGERLIITS  182 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~--~~~~~~l~~~l~~--~---~gs~IIiTT  182 (398)
                      +..++..++.....    ...........+...+.  +++.+|||||++.  ......|...+..  .   .+..||+||
T Consensus        91 ~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~  166 (389)
T 1fnn_A           91 IGEIARSLNIPFPR----RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG  166 (389)
T ss_dssp             HHHHHHHTTCCCCS----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred             HHHHHHHhCccCCC----CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence            88999888754321    11234444555555554  4678999999984  5656666555532  1   467888888


Q ss_pred             CChHHHHHhcC------CCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhc---------CCCchh
Q 015891          183 RNEKLTTEMVG------EENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKL---------QGQNED  245 (398)
Q Consensus       183 R~~~v~~~~~~------~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c---------~GlPla  245 (398)
                      ++..+...+..      ....+.++|++. ++...++.+.+..  .....+   .+..+.|++.+         .|.|..
T Consensus       167 ~~~~~~~~l~~~~~~r~~~~~i~~~pl~~-~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~  242 (389)
T 1fnn_A          167 HNDAVLNNLDPSTRGIMGKYVIRFSPYTK-DQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARL  242 (389)
T ss_dssp             SSTHHHHTSCHHHHHHHTTCEEECCCCBH-HHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred             CCchHHHHhCHHhhhcCCCceEEeCCCCH-HHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHH
Confidence            87654332210      124799999998 6677777664321  111222   23666777888         688766


Q ss_pred             hhcc
Q 015891          246 AVNF  249 (398)
Q Consensus       246 i~~~  249 (398)
                      +..+
T Consensus       243 ~~~~  246 (389)
T 1fnn_A          243 AIDI  246 (389)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.39  E-value=3.5e-12  Score=122.72  Aligned_cols=202  Identities=16%  Similarity=0.178  Sum_probs=128.1

Q ss_pred             CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc------ccceEEEEecCCcccHH
Q 015891           36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ------FVPRIWVCTMSGQKTAE  109 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~~v~~v~~~~~~~  109 (398)
                      .|+.|+||+.+++.+..++...........+.|+|++|+||||||+.+++.  ....      -...+|+. .....+..
T Consensus        17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~-~~~~~~~~   93 (387)
T 2v1u_A           17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVN-ARHRETPY   93 (387)
T ss_dssp             CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEE-TTTSCSHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEE-CCcCCCHH
Confidence            447899999999999999865222456778999999999999999999876  3221      12245666 66677788


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCHH----HHHHHHhHcC---C---CCCCE
Q 015891          110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDME----VCKHLSKVLP---R---GYGER  177 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~----~~~~l~~~l~---~---~~gs~  177 (398)
                      .++..++..++.....    ...........+...+.  +++.+|||||++...    ..+.+...+.   .   ..+..
T Consensus        94 ~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~  169 (387)
T 2v1u_A           94 RVASAIAEAVGVRVPF----TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS  169 (387)
T ss_dssp             HHHHHHHHHHSCCCCS----SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred             HHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence            8889999998764321    11234444555666663  357899999999542    3344443332   1   44667


Q ss_pred             EEEEeCChHHH----HHhcCC--CceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcC---CCchhh
Q 015891          178 LIITSRNEKLT----TEMVGE--ENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQ---GQNEDA  246 (398)
Q Consensus       178 IIiTTR~~~v~----~~~~~~--~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai  246 (398)
                      +|+||+...+.    ..+...  ...+.++|++. ++...++.+.+..  .....++   +..+.+++.++   |.|..+
T Consensus       170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~-~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~  245 (387)
T 2v1u_A          170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTA-PQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRA  245 (387)
T ss_dssp             EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCH-HHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHH
T ss_pred             EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCH-HHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHH
Confidence            88888765221    111111  24789999998 6677777764321  1112222   24566677776   888654


Q ss_pred             hc
Q 015891          247 VN  248 (398)
Q Consensus       247 ~~  248 (398)
                      ..
T Consensus       246 ~~  247 (387)
T 2v1u_A          246 LD  247 (387)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.39  E-value=3.2e-12  Score=123.11  Aligned_cols=200  Identities=15%  Similarity=0.119  Sum_probs=126.3

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--------ccceEEEEecCCcc-c
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--------FVPRIWVCTMSGQK-T  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--------F~~~~~v~~v~~~~-~  107 (398)
                      |+.|+||+.+++.+..++.........+.+.|+|++|+||||||+.+++.  ....        ....+|+. ..... +
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~-~~~~~~~   95 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVN-CREVGGT   95 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEE-HHHHCSC
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEE-CccCCCC
Confidence            47899999999999988865223345678999999999999999999876  3211        22345665 55545 6


Q ss_pred             HHHHHHHHHHHc-CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHH---HHH-HHhHcCCCCCCEEEEEe
Q 015891          108 AESIVKRILKRL-GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEV---CKH-LSKVLPRGYGERLIITS  182 (398)
Q Consensus       108 ~~~~~~~il~~l-~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~---~~~-l~~~l~~~~gs~IIiTT  182 (398)
                      ...++..++..+ +.....    ...........+...+..++.+|||||++....   .+. +...+....+..+|+||
T Consensus        96 ~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t  171 (384)
T 2qby_B           96 PQAVLSSLAGKLTGFSVPK----HGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMIS  171 (384)
T ss_dssp             HHHHHHHHHHHHHCSCCCS----SSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEE
Confidence            777788888877 332211    112334455667777776666999999985432   223 33333322678899999


Q ss_pred             CChHH----HHHh-cCCCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcC---CCchhhh
Q 015891          183 RNEKL----TTEM-VGEENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQ---GQNEDAV  247 (398)
Q Consensus       183 R~~~v----~~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai~  247 (398)
                      +...+    ...+ ......+.++|++. ++...++.+.+..  .....++   +..+.|++.|+   |.|..+.
T Consensus       172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~-~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~  242 (384)
T 2qby_B          172 NDINVRDYMEPRVLSSLGPSVIFKPYDA-EQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAV  242 (384)
T ss_dssp             SSTTTTTTSCHHHHHTCCCEEEECCCCH-HHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHH
T ss_pred             CCCchHhhhCHHHHhcCCCeEEECCCCH-HHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHH
Confidence            87531    1111 11134899999988 6678888764321  1112222   24556677776   8776543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.37  E-value=9e-13  Score=126.73  Aligned_cols=203  Identities=17%  Similarity=0.219  Sum_probs=125.9

Q ss_pred             CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc---cceEEEEecCCcccHHHH
Q 015891           35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF---VPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~~v~~v~~~~~~~~~  111 (398)
                      ..|+.|+||+.+++.+..++...........+.|+|++|+|||||++.+++.  ....+   ...+|+. .........+
T Consensus        17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~   93 (386)
T 2qby_A           17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYIN-TRQIDTPYRV   93 (386)
T ss_dssp             CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEE-HHHHCSHHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEE-CCCCCCHHHH
Confidence            3457899999999999998875212455678999999999999999999886  33332   2345665 5555566677


Q ss_pred             HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCH------HHHHHHHhHcC--CCCCCEEEEE
Q 015891          112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDM------EVCKHLSKVLP--RGYGERLIIT  181 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~------~~~~~l~~~l~--~~~gs~IIiT  181 (398)
                      +..++..++.....    ...........+...+..  ++.+|||||++..      +.+..+...+.  ...+..+|+|
T Consensus        94 ~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~  169 (386)
T 2qby_A           94 LADLLESLDVKVPF----TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI  169 (386)
T ss_dssp             HHHHTTTTSCCCCS----SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred             HHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence            77777777654321    112344445556566643  4899999999853      23333333332  2335677888


Q ss_pred             eCChHHHHHhc-----C-CCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcC---CCchhhhc
Q 015891          182 SRNEKLTTEMV-----G-EENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQ---GQNEDAVN  248 (398)
Q Consensus       182 TR~~~v~~~~~-----~-~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai~~  248 (398)
                      |++..+...+.     . ....+.++|++. ++...++.+.+..  ......+   +..+.+++.++   |.|..+..
T Consensus       170 ~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~-~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~  243 (386)
T 2qby_A          170 TNDVKFVDLLDPRVKSSLSEEEIIFPPYNA-EELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALD  243 (386)
T ss_dssp             ESCGGGGGGCTTHHHHTTTTEEEEECCCCH-HHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ECCCChHhhhCHHHhccCCCeeEEeCCCCH-HHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHH
Confidence            88764322211     1 125899999998 6678887764321  1112222   24555666666   88886554

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.33  E-value=1.1e-11  Score=109.27  Aligned_cols=180  Identities=13%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-ccc-eEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FVP-RIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~-~~~v~~v~~~~~~~~~~~~i  115 (398)
                      .+++||+..++.+..++..    .....+.|+|++|+|||+||+.+++.  .... +.. .+.+. .+...........+
T Consensus        17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   89 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMN-ASDERGIDVVRHKI   89 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEE-TTCTTCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEec-cccccChHHHHHHH
Confidence            5799999999999999975    23334999999999999999999875  2222 221 22233 32222222221111


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHHh
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTEM  191 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~~  191 (398)
                      ........                    ....++.+||+||++.  ....+.+...+. ...++++|+||+... +...+
T Consensus        90 ~~~~~~~~--------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l  149 (226)
T 2chg_A           90 KEFARTAP--------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI  149 (226)
T ss_dssp             HHHHTSCC--------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred             HHHhcccC--------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHH
Confidence            11111000                    0024678999999984  455555555554 345678888887653 22222


Q ss_pred             cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          192 VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       192 ~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ......+++.+++. ++...++.+.+...+...++   +..+.|++.++|.|..+..
T Consensus       150 ~~r~~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~  202 (226)
T 2chg_A          150 QSRCAVFRFKPVPK-EAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAIN  202 (226)
T ss_dssp             HTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCceeecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            23345899999998 66777777654322222222   3567788899999987554

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.16  E-value=1e-10  Score=109.65  Aligned_cols=180  Identities=17%  Similarity=0.299  Sum_probs=108.4

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-cc-ceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FV-PRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ++++|++..++.+..++..    +....+.|+|++|+||||+|+.+++.  .... +. ..+++. .+...... .+..+
T Consensus        21 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~-~~~~~~~~-~i~~~   92 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELN-ASDDRGID-VVRNQ   92 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEEC-TTSCCSHH-HHHTH
T ss_pred             HHHHCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEec-CccccChH-HHHHH
Confidence            5799999999999999965    23333999999999999999999876  3221 21 123333 22221211 11112


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHH
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTE  190 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~  190 (398)
                      +..+....                   ..+ .+++.++|+||++.  ....+.|...+. ...++++|+||+... +...
T Consensus        93 ~~~~~~~~-------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~  153 (323)
T 1sxj_B           93 IKHFAQKK-------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP  153 (323)
T ss_dssp             HHHHHHBC-------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred             HHHHHhcc-------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence            21110000                   001 24578999999984  444444554543 335678888887643 2223


Q ss_pred             hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +......+++.+++. ++...++.+.+...+...++   +....|++.|+|.|..+..
T Consensus       154 l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~a~~  207 (323)
T 1sxj_B          154 LQSQCAILRYSKLSD-EDVLKRLLQIIKLEDVKYTN---DGLEAIIFTAEGDMRQAIN  207 (323)
T ss_dssp             HHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred             HHhhceEEeecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            334456899999998 66777777644322222222   3567888999999976544

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.06  E-value=6.3e-10  Score=104.39  Aligned_cols=181  Identities=15%  Similarity=0.217  Sum_probs=108.2

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-cc-ceEEEEecCCcccHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FV-PRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~~v~~v~~~~~~~~~~~~  114 (398)
                      .++++|++..++.+..++..    +....+.|+|++|+||||+|+.+++.  +... +. ..+.+. .+..... ..+..
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~-~~~~~~~-~~~~~   95 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELN-ASDERGI-NVIRE   95 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEE-TTCHHHH-HTTHH
T ss_pred             HHHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEee-ccccCch-HHHHH
Confidence            35699999999999999975    23345999999999999999999876  3221 11 122222 2211111 11111


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHH
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTE  190 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~  190 (398)
                      .+..+....                   .....++.++|+||++.  .+..+.|...+. ...++++|+||.... +...
T Consensus        96 ~~~~~~~~~-------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~  156 (327)
T 1iqp_A           96 KVKEFARTK-------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP  156 (327)
T ss_dssp             HHHHHHHSC-------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred             HHHHHHhhC-------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHH
Confidence            111100000                   00114678999999984  455555655554 345678888887643 2122


Q ss_pred             hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +......+.+.|++. ++...++.+.+...+...++   +....|++.++|.|..+..
T Consensus       157 l~sr~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~~~~  210 (327)
T 1iqp_A          157 IQSRCAIFRFRPLRD-EDIAKRLRYIAENEGLELTE---EGLQAILYIAEGDMRRAIN  210 (327)
T ss_dssp             HHHTEEEEECCCCCH-HHHHHHHHHHHHTTTCEECH---HHHHHHHHHHTTCHHHHHH
T ss_pred             HHhhCcEEEecCCCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHCCCCHHHHHH
Confidence            222234789999997 66777777655443333333   3567788889998887554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.97  E-value=6.2e-09  Score=94.94  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc--------------ceEEEEecC-------------------Cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV--------------PRIWVCTMS-------------------GQ  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~--------------~~~~v~~v~-------------------~~  105 (398)
                      .-.+++|+|++|+|||||++.+..-..-. .  .|+              .+.++..-.                   ..
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  115 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG  115 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence            45689999999999999999996531100 0  000              011211000                   00


Q ss_pred             ccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhC------CCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          106 KTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIG------KRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~------k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                      ........+++..+++..... .....+++++++..+++.|..      ++-+|+||++.   |......+...+.   .
T Consensus       116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~  195 (266)
T 4g1u_C          116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR  195 (266)
T ss_dssp             TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence            122345667888888765432 334589999999999999998      99999999999   4443333333332   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..+..||++||+.+.+..+++
T Consensus       196 ~~~~tvi~vtHdl~~~~~~~d  216 (266)
T 4g1u_C          196 QEPLAVCCVLHDLNLAALYAD  216 (266)
T ss_dssp             HSSEEEEEECSCHHHHHHHCS
T ss_pred             cCCCEEEEEEcCHHHHHHhCC
Confidence            235689999999988776543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.97  E-value=2.2e-09  Score=102.75  Aligned_cols=196  Identities=16%  Similarity=0.145  Sum_probs=107.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|++..++.+...+..   ......+.|+|++|+||||+|+.+++.......+...   . ......    ...+..
T Consensus        16 ~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~---~-~~~~~~----~~~~~~   84 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---P-CGVCDN----CREIEQ   84 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSS---C-CSSSHH----HHHHHT
T ss_pred             hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC---C-CcccHH----HHHHhc
Confidence            5699999999999999965   1224578999999999999999998752111111000   0 000000    011110


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCChH-HH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNEK-LT  188 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~~-v~  188 (398)
                      .-...............+.... +...+     .+++.++|+||++  +....+.+...+.. ..+..+|++|.+.. +.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  163 (373)
T 1jr3_A           85 GRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (373)
T ss_dssp             SCCSSCEEEETTCSCCSSCHHH-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred             cCCCceEEecccccCCHHHHHH-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence            0000000000000011111122 22222     2356899999998  44555566555542 34566777776442 22


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      ..+......+++.+++. ++...++.+.+...+...++   +....|++.++|.|..+..+
T Consensus       164 ~~l~sr~~~i~~~~l~~-~~~~~~l~~~~~~~~~~~~~---~a~~~l~~~~~G~~r~~~~~  220 (373)
T 1jr3_A          164 VTILSRCLQFHLKALDV-EQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSL  220 (373)
T ss_dssp             HHHHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHSSSCHHHHHHH
T ss_pred             HHHHhheeEeeCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHCCCCHHHHHHH
Confidence            23334457899999998 66777777654322222222   25677888999999877654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.96  E-value=5.2e-09  Score=93.73  Aligned_cols=78  Identities=12%  Similarity=0.182  Sum_probs=57.3

Q ss_pred             HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR  183 (398)
                      ..+++..+++...  .......+++++++..+++.+..++-+|+||++.   |......+...+.   ...|..||++||
T Consensus       125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH  204 (235)
T 3tif_A          125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH  204 (235)
T ss_dssp             HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred             HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence            4456777777542  3344568999999999999999999999999999   4444444444432   223789999999


Q ss_pred             ChHHHH
Q 015891          184 NEKLTT  189 (398)
Q Consensus       184 ~~~v~~  189 (398)
                      +.+++.
T Consensus       205 d~~~~~  210 (235)
T 3tif_A          205 DINVAR  210 (235)
T ss_dssp             CHHHHT
T ss_pred             CHHHHH
Confidence            998763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.95  E-value=9.7e-09  Score=91.29  Aligned_cols=136  Identities=17%  Similarity=0.222  Sum_probs=85.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cc------------------cceEEEEec---CCccc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QF------------------VPRIWVCTM---SGQKT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F------------------~~~~~v~~v---~~~~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|                  ..+.++..-   ....+          
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  108 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML  108 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence            34689999999999999999996531100 0  00                  012222100   00001          


Q ss_pred             --------HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891          108 --------AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG  173 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~  173 (398)
                              ......++++.+++.... ......+.+++++..+++.+..++-+++||++.   |....+.+...+.  ..
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~  188 (224)
T 2pcj_A          109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE  188 (224)
T ss_dssp             HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence                    112345677888876532 334458999999999999999999999999999   4444444443332  12


Q ss_pred             CCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          174 YGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .|..||++||+.+.+ .+  .++++.+
T Consensus       189 ~g~tvi~vtHd~~~~-~~--~d~v~~l  212 (224)
T 2pcj_A          189 GGTSIVMVTHERELA-EL--THRTLEM  212 (224)
T ss_dssp             TTCEEEEECSCHHHH-TT--SSEEEEE
T ss_pred             CCCEEEEEcCCHHHH-Hh--CCEEEEE
Confidence            378999999998876 33  2444444

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.94  E-value=6.6e-09  Score=98.39  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=86.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---ccc-----------------ceEEEEecCCcc---------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFV-----------------PRIWVCTMSGQK---------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~-----------------~~~~v~~v~~~~---------------  106 (398)
                      .-.+++|+|++|+|||||++.+..-..-..   .|+                 .+.++   .+.+               
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v---~Q~~~l~~~~TV~env~~~  129 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI---FQHFNLLSSRTVFGNVALP  129 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEE---CSSCCCCTTSCHHHHHHHH
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEE---eCCCccCCCCCHHHHHHHH
Confidence            456899999999999999999965311100   000                 11121   1110               


Q ss_pred             ---------cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          107 ---------TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       107 ---------~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                               ...+...++++.+++... .......+++++++..++++|..++-+|++|++.   |......+...+.  
T Consensus       130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l  209 (366)
T 3tui_C          130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI  209 (366)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence                     112335667888887653 3334558999999999999999999999999999   4433333333332  


Q ss_pred             -CCCCCEEEEEeCChHHHHHhcCC
Q 015891          172 -RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                       ...|.+||++||+.+++..+++.
T Consensus       210 ~~~~g~Tii~vTHdl~~~~~~aDr  233 (366)
T 3tui_C          210 NRRLGLTILLITHEMDVVKRICDC  233 (366)
T ss_dssp             HHHSCCEEEEEESCHHHHHHHCSE
T ss_pred             HHhCCCEEEEEecCHHHHHHhCCE
Confidence             23488999999999888776443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.93  E-value=1e-08  Score=93.31  Aligned_cols=132  Identities=16%  Similarity=0.178  Sum_probs=84.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc----------------ceEEEEecC---CcccH-----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV----------------PRIWVCTMS---GQKTA-----------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~----------------~~~~v~~v~---~~~~~-----------  108 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .|+                .+.++..-.   ...+.           
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~  128 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV  128 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999996531100 0  000                112221000   00011           


Q ss_pred             --------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891          109 --------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY  174 (398)
Q Consensus       109 --------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~  174 (398)
                              .....++++.+++... .......+++++++..+++.+..++-+|+||++.   |....+.+...+.  ...
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~  208 (263)
T 2olj_A          129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE  208 (263)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence                    1234566777777543 2334458999999999999999999999999999   4444443333332  123


Q ss_pred             CCEEEEEeCChHHHHHhcC
Q 015891          175 GERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~  193 (398)
                      |..||++||+.+.+..+++
T Consensus       209 g~tvi~vtHd~~~~~~~~d  227 (263)
T 2olj_A          209 GMTMVVVTHEMGFAREVGD  227 (263)
T ss_dssp             TCEEEEECSCHHHHHHHCS
T ss_pred             CCEEEEEcCCHHHHHHhCC
Confidence            7899999999887776533

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.92  E-value=8.8e-09  Score=93.26  Aligned_cols=136  Identities=14%  Similarity=0.122  Sum_probs=87.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCC-ccc---cceEEEEe---------cC------C----------cccHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQF---VPRIWVCT---------MS------G----------QKTAESIVK  113 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~~v~~---------v~------~----------~~~~~~~~~  113 (398)
                      -.+++|+|++|+|||||++.++.-..-. ...   ..+.++..         +.      .          .........
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~  110 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM  110 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence            4589999999999999999997652110 000   01111110         00      0          001123456


Q ss_pred             HHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChH
Q 015891          114 RILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEK  186 (398)
Q Consensus       114 ~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~  186 (398)
                      .+++.+++... .......+++++++..+++.+..++-+++||++.   |....+.+...+.   ...|..||++||+.+
T Consensus       111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~  190 (253)
T 2nq2_C          111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN  190 (253)
T ss_dssp             HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred             HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            77888887643 2334458999999999999999999999999999   4444444443332   223789999999988


Q ss_pred             HHHHhcCCCceEEc
Q 015891          187 LTTEMVGEENLHQL  200 (398)
Q Consensus       187 v~~~~~~~~~~~~l  200 (398)
                      .+..++  ++++.+
T Consensus       191 ~~~~~~--d~v~~l  202 (253)
T 2nq2_C          191 QVVAIA--NKTLLL  202 (253)
T ss_dssp             HHHHHC--SEEEEE
T ss_pred             HHHHhC--CEEEEE
Confidence            776543  334444

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.92  E-value=7.2e-09  Score=93.52  Aligned_cols=127  Identities=20%  Similarity=0.246  Sum_probs=84.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-----------------EEecCCc------ccH----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-----------------VCTMSGQ------KTA----------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-----------------v~~v~~~------~~~----------  108 (398)
                      .-.+++|+|++|+|||||++.++.-  ....  +.++                 +.++.+.      .+.          
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  100 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGM--TSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD  100 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS--SCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC--CCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence            3458999999999999999999765  2111  1111                 1111111      011          


Q ss_pred             ---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCc-------EEEecCCC---CHHHHHHHHhHcC--C
Q 015891          109 ---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRY-------LIVLDDFE---DMEVCKHLSKVLP--R  172 (398)
Q Consensus       109 ---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~-------LlVLDdv~---~~~~~~~l~~~l~--~  172 (398)
                         ......+++.+++... .......+++++++..+.+.+..++-       +++||++.   |....+.+...+.  .
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~  180 (249)
T 2qi9_C          101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS  180 (249)
T ss_dssp             TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence               3345677888887643 22334589999999999999999888       99999999   4444444444332  1


Q ss_pred             CCCCEEEEEeCChHHHHHhc
Q 015891          173 GYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..|..||++||+.+.+..++
T Consensus       181 ~~g~tviivtHd~~~~~~~~  200 (249)
T 2qi9_C          181 QQGLAIVMSSHDLNHTLRHA  200 (249)
T ss_dssp             HTTCEEEEECSCHHHHHHHC
T ss_pred             hCCCEEEEEeCCHHHHHHhC
Confidence            23789999999988776543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.92  E-value=5.7e-09  Score=93.69  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE---------------EEecCCc-------------------c
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW---------------VCTMSGQ-------------------K  106 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~---------------v~~v~~~-------------------~  106 (398)
                      .. .+++|+|++|+|||||++.+..-...   ..+.++               +.++.+.                   .
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~   98 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV   98 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence            45 78999999999999999999653110   000010               0001110                   0


Q ss_pred             c---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCC
Q 015891          107 T---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGE  176 (398)
Q Consensus       107 ~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs  176 (398)
                      .   ..+...++++.+++... .......+++++++..+++.+..++-+++||++.   |....+.+...+.   ...|.
T Consensus        99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~  178 (240)
T 2onk_A           99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV  178 (240)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            0   12345667888887653 2334458999999999999999999999999999   5544444444432   12377


Q ss_pred             EEEEEeCChHHHHHhc
Q 015891          177 RLIITSRNEKLTTEMV  192 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~  192 (398)
                      .||++||+.+.+..++
T Consensus       179 tvi~vtHd~~~~~~~~  194 (240)
T 2onk_A          179 PILHVTHDLIEAAMLA  194 (240)
T ss_dssp             CEEEEESCHHHHHHHC
T ss_pred             EEEEEeCCHHHHHHhC
Confidence            8999999987766543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.92  E-value=9e-09  Score=93.27  Aligned_cols=130  Identities=17%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-------------ceEEEEecC---CcccH--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-------------PRIWVCTMS---GQKTA--------------  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-------------~~~~v~~v~---~~~~~--------------  108 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|.             .+.++..-.   ...+.              
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~  119 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS  119 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence            45689999999999999999996541110 0  000             112221000   00011              


Q ss_pred             ----HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891          109 ----ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL  178 (398)
Q Consensus       109 ----~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I  178 (398)
                          .....++++.+++... .......+.+++++..+++.+..++-+++||++.   |......+...+.  ...|..|
T Consensus       120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ti  199 (256)
T 1vpl_A          120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI  199 (256)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEE
Confidence                1234566777777543 2233458999999999999999999999999999   4444333333332  1247899


Q ss_pred             EEEeCChHHHHHh
Q 015891          179 IITSRNEKLTTEM  191 (398)
Q Consensus       179 IiTTR~~~v~~~~  191 (398)
                      |++||+.+.+..+
T Consensus       200 iivtHd~~~~~~~  212 (256)
T 1vpl_A          200 LVSSHNMLEVEFL  212 (256)
T ss_dssp             EEEECCHHHHTTT
T ss_pred             EEEcCCHHHHHHH
Confidence            9999998877664

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.91  E-value=6.9e-09  Score=94.98  Aligned_cols=127  Identities=19%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc----------------ceEEEEecCCcc-------c--------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV----------------PRIWVCTMSGQK-------T--------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~----------------~~~~v~~v~~~~-------~--------  107 (398)
                      .-.+++|+|++|+|||||++.+..-.... .  .|+                .+.++   .+..       +        
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v---~Q~~~~~~~~~tv~e~l~~~  109 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIV---FQDPDNQLFSASVYQDVSFG  109 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEE---CSSGGGTCCSSBHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEE---EcCcccccccCcHHHHHHHH
Confidence            34689999999999999999996531100 0  000                11122   1110       1        


Q ss_pred             ----------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891          108 ----------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--  171 (398)
Q Consensus       108 ----------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--  171 (398)
                                ..+...++++.+++... .......+++++++..+++.|..++-+|+||++.   |......+...+.  
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l  189 (275)
T 3gfo_A          110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM  189 (275)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence                      12335567778887653 2334458999999999999999999999999999   4443333333332  


Q ss_pred             C-CCCCEEEEEeCChHHHHHh
Q 015891          172 R-GYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       172 ~-~~gs~IIiTTR~~~v~~~~  191 (398)
                      . ..|.+||++||+.+.+..+
T Consensus       190 ~~~~g~tvi~vtHdl~~~~~~  210 (275)
T 3gfo_A          190 QKELGITIIIATHDIDIVPLY  210 (275)
T ss_dssp             HHHHCCEEEEEESCCSSGGGG
T ss_pred             HhhCCCEEEEEecCHHHHHHh
Confidence            1 2388999999998777654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.89  E-value=1.3e-08  Score=92.69  Aligned_cols=82  Identities=11%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..++++.+++...  .......+++++++..+++.+..++-+|+||++.   |....+.+...+.  ...|..||++||+
T Consensus       133 ~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  212 (262)
T 1b0u_A          133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE  212 (262)
T ss_dssp             HHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             HHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4567777887653  3344558999999999999999999999999999   4443333333332  1237889999999


Q ss_pred             hHHHHHhcC
Q 015891          185 EKLTTEMVG  193 (398)
Q Consensus       185 ~~v~~~~~~  193 (398)
                      .+.+..+++
T Consensus       213 ~~~~~~~~d  221 (262)
T 1b0u_A          213 MGFARHVSS  221 (262)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHhCC
Confidence            887766533

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.88  E-value=7.2e-09  Score=98.50  Aligned_cols=194  Identities=16%  Similarity=0.211  Sum_probs=103.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC---CCCCc-cccc------------------
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK---PDVKT-QFVP------------------   95 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~---~~~~~-~F~~------------------   95 (398)
                      ++++|.+..++.+..++..  ...... +.|+|++|+||||+++.+++.   +.... .++.                  
T Consensus        14 ~~~vg~~~~~~~l~~~~~~--~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~   90 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQ--PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS   90 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTC--TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred             HHhcCCHHHHHHHHHHHhh--CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence            5689999999988888722  222233 899999999999999998763   10000 0000                  


Q ss_pred             --eEEEEecCCc-ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHc
Q 015891           96 --RIWVCTMSGQ-KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVL  170 (398)
Q Consensus        96 --~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l  170 (398)
                        .+.+. .+.. .......++++..+.......         ... .+ ..+..++.++||||++.  ....+.+...+
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l  158 (354)
T 1sxj_E           91 PYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQVD---------FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM  158 (354)
T ss_dssp             SSEEEEC-CC----CCHHHHHHHHHHHTTTTC-----------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred             cceEEec-HhhcCCcchHHHHHHHHHHHHhcccc---------ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence              01111 0000 000001222222221110000         000 00 00234678999999994  44445555555


Q ss_pred             C-CCCCCEEEEEeCChH-HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          171 P-RGYGERLIITSRNEK-LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       171 ~-~~~gs~IIiTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      . ...++++|++|++.. +...+......+++.|++. ++...++.+.....+...+.  .+....|++.++|.+..+..
T Consensus       159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~  235 (354)
T 1sxj_E          159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSD-SEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLL  235 (354)
T ss_dssp             HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCH-HHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHH
Confidence            3 334678888888743 3233334457899999998 66777776644322222220  12567788889998877655


Q ss_pred             c
Q 015891          249 F  249 (398)
Q Consensus       249 ~  249 (398)
                      .
T Consensus       236 ~  236 (354)
T 1sxj_E          236 M  236 (354)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.88  E-value=4.2e-09  Score=98.38  Aligned_cols=177  Identities=13%  Similarity=0.156  Sum_probs=106.8

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccccc-ceEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQFV-PRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ++++|++..++.+..++..    +....+.|+|++|+|||++|+.+++.  . ...+. ..+.+. .+.....       
T Consensus        17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~-~~~~~~~-------   82 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMN-ASDERGI-------   82 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTT----TCCCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEE-TTSTTCT-------
T ss_pred             HHHhCCHHHHHHHHHHHhC----CCCCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEe-CccccCh-------
Confidence            5689999999999988854    33334899999999999999999876  2 11111 122233 2221000       


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHH--H-hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCChH-HH
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQ--L-IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRNEK-LT  188 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~~~-v~  188 (398)
                                      .........+...  + ..++.++|+||++.  ....+.|...+.. ..++++|+||.... +.
T Consensus        83 ----------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~  146 (319)
T 2chq_A           83 ----------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII  146 (319)
T ss_dssp             ----------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence                            0011111111111  1 24578999999984  4555556666653 34677787776543 22


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+......+++.|++. ++...++.+.+...+...++   +....+++.++|.+..+..
T Consensus       147 ~~l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~  202 (319)
T 2chq_A          147 EPIQSRCAVFRFKPVPK-EAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAIN  202 (319)
T ss_dssp             HHHHTTCEEEECCCCCH-HHHHHHHHHHHHTTCCCBCH---HHHHHHHHTTTTCHHHHHH
T ss_pred             hHHHhhCeEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            33334456899999998 66777777655443333333   3566788888888876544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.88  E-value=1.6e-08  Score=90.94  Aligned_cols=131  Identities=13%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cc--------------c-ceEEEEe---cCC----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QF--------------V-PRIWVCT---MSG----------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F--------------~-~~~~v~~---v~~----------------  104 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|              . .+.++..   +..                
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~  110 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK  110 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence            34689999999999999999996531100 0  00              0 0122210   000                


Q ss_pred             -cccHHHHHHHHHHHcC-CCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          105 -QKTAESIVKRILKRLG-VDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       105 -~~~~~~~~~~il~~l~-~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                       .......+..+++.++ +... .......+.+++++..+.+.+..++-+++||++.   |....+.+...+.  ...|.
T Consensus       111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~  190 (240)
T 1ji0_A          111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT  190 (240)
T ss_dssp             CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence             0112234556666663 5432 2334458999999999999999999999999999   4444444443332  12478


Q ss_pred             EEEEEeCChHHHHHhc
Q 015891          177 RLIITSRNEKLTTEMV  192 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~  192 (398)
                      .||++||+.+.+..++
T Consensus       191 tvi~vtHd~~~~~~~~  206 (240)
T 1ji0_A          191 TILLVEQNALGALKVA  206 (240)
T ss_dssp             CEEEEESCHHHHHHHC
T ss_pred             EEEEEecCHHHHHHhC
Confidence            8999999987665543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.86  E-value=1.4e-08  Score=95.99  Aligned_cols=132  Identities=16%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc----------------eEEEEe---------cCC---------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP----------------RIWVCT---------MSG---------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~----------------~~~v~~---------v~~---------  104 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|+.                +.++..         +.+         
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~  108 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG  108 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence            346899999999999999999965311100   0110                111110         000         


Q ss_pred             ---cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891          105 ---QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY  174 (398)
Q Consensus       105 ---~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~  174 (398)
                         .........++++.+++... .......+++++++..+++.|..++-+|+||++.   |......+...+.   ...
T Consensus       109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~  188 (359)
T 3fvq_A          109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN  188 (359)
T ss_dssp             SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence               00123456678888888653 2334458999999999999999999999999999   4433333332221   235


Q ss_pred             CCEEEEEeCChHHHHHhcC
Q 015891          175 GERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       175 gs~IIiTTR~~~v~~~~~~  193 (398)
                      |.+||++||+...+..+++
T Consensus       189 g~tvi~vTHd~~ea~~~aD  207 (359)
T 3fvq_A          189 GKSAVFVSHDREEALQYAD  207 (359)
T ss_dssp             TCEEEEECCCHHHHHHHCS
T ss_pred             CCEEEEEeCCHHHHHHHCC
Confidence            8899999999988877644

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.86  E-value=1.7e-08  Score=91.76  Aligned_cols=124  Identities=15%  Similarity=0.117  Sum_probs=83.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE--------------EE-ecCCcc----cH--------------H
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW--------------VC-TMSGQK----TA--------------E  109 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~--------------v~-~v~~~~----~~--------------~  109 (398)
                      -.+++|+|++|+|||||++.++.-.    ...+.++              +. ++.+..    +.              .
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~  105 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR  105 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence            4589999999999999999997651    1111111              11 233221    11              1


Q ss_pred             HHHHHHHHHcCCC-CC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCC
Q 015891          110 SIVKRILKRLGVD-DG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRN  184 (398)
Q Consensus       110 ~~~~~il~~l~~~-~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~  184 (398)
                      ....++++.+++. .. .......+.+++++..+++.+..++-+++||++.   |....+.+...+..-.. .||++||+
T Consensus       106 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd  184 (263)
T 2pjz_A          106 DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHE  184 (263)
T ss_dssp             HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESC
T ss_pred             HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcC
Confidence            2345677778876 42 2333458999999999999999999999999999   55555555544432222 89999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      .+.+..+
T Consensus       185 ~~~~~~~  191 (263)
T 2pjz_A          185 LDMLNLY  191 (263)
T ss_dssp             GGGGGGC
T ss_pred             HHHHHHh
Confidence            8766554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.85  E-value=4.3e-08  Score=89.43  Aligned_cols=79  Identities=15%  Similarity=0.123  Sum_probs=57.5

Q ss_pred             HHHHHHHcCCCC-C-CCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVDD-G-TTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~~-~-~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ..++++.+++.. . ..... ..+.+++++..++++|..++-+|+||++.   |....+.+...+.  ...|..||++||
T Consensus       143 ~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH  222 (267)
T 2zu0_C          143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH  222 (267)
T ss_dssp             HHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred             HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence            446677788753 2 22222 38999999999999999999999999999   4544444444443  234789999999


Q ss_pred             ChHHHHH
Q 015891          184 NEKLTTE  190 (398)
Q Consensus       184 ~~~v~~~  190 (398)
                      +.+.+..
T Consensus       223 d~~~~~~  229 (267)
T 2zu0_C          223 YQRILDY  229 (267)
T ss_dssp             SGGGGGT
T ss_pred             CHHHHHh
Confidence            9876654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.85  E-value=1.1e-08  Score=97.44  Aligned_cols=130  Identities=14%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE---------------EEecCCc------c--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW---------------VCTMSGQ------K--------------  106 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~---------------v~~v~~~------~--------------  106 (398)
                      .-.+++|+|++|+|||||++.++.-...   ..+.++               +.++.++      .              
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~  104 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG  104 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence            3468999999999999999999754111   011111               1111111      0              


Q ss_pred             ----cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891          107 ----TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG  175 (398)
Q Consensus       107 ----~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g  175 (398)
                          ...+...++++.+++... ...+...+++++++..|.+.|..++-+|+||++.   |......+...+.   ...|
T Consensus       105 ~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g  184 (381)
T 3rlf_A          105 AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG  184 (381)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence                112345677888887653 2334458999999999999999999999999999   4433333333332   2237


Q ss_pred             CEEEEEeCChHHHHHhcCC
Q 015891          176 ERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~~~~  194 (398)
                      ..||++||+...+..+++.
T Consensus       185 ~tii~vTHd~~ea~~~aDr  203 (381)
T 3rlf_A          185 RTMIYVTHDQVEAMTLADK  203 (381)
T ss_dssp             CEEEEECSCHHHHHHHCSE
T ss_pred             CEEEEEECCHHHHHHhCCE
Confidence            8999999999887776443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.84  E-value=2.5e-08  Score=94.29  Aligned_cols=132  Identities=16%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---ccc------------ceEEEEe---cCCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFV------------PRIWVCT---MSGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~------------~~~~v~~---v~~~~~----------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|+            .+.++..   +....+                
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~  119 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK  119 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence            346899999999999999999975421100   010            1112110   000000                


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ..+...++++.+++... .......+++++++..+.+.|..++-+|+||++.   |....+.+...+.   ...|..|
T Consensus       120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  199 (355)
T 1z47_A          120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS  199 (355)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              12345667888887653 2334458999999999999999999999999998   4443333333332   2237899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       200 i~vTHd~~~a~~~ad  214 (355)
T 1z47_A          200 VFVTHDQEEALEVAD  214 (355)
T ss_dssp             EEECSCHHHHHHHCS
T ss_pred             EEECCCHHHHHHhCC
Confidence            999999888776543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.83  E-value=3.6e-08  Score=93.56  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=85.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cc------------cceEEEEe---cCCccc----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QF------------VPRIWVCT---MSGQKT----------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F------------~~~~~v~~---v~~~~~----------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|            ..+.++..   +....+                
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  107 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR  107 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            456899999999999999999975411100   00            01112110   000000                


Q ss_pred             --HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ..+...++++.+++.... ......+++++++..+.+.|..++-+++||++.   |......+...+.   ...|.++
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  187 (362)
T 2it1_A          108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT  187 (362)
T ss_dssp             HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence              122356678888886542 334458999999999999999999999999998   4443333333332   2237899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       188 i~vTHd~~~a~~~ad  202 (362)
T 2it1_A          188 VYVTHDQAEALAMAD  202 (362)
T ss_dssp             EEEESCHHHHHHHCS
T ss_pred             EEECCCHHHHHHhCC
Confidence            999999887766543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.83  E-value=2.4e-08  Score=97.85  Aligned_cols=180  Identities=17%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             CCcc-cchhh--HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecCCcccHHHHH
Q 015891           38 ANVH-GFANE--ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESIV  112 (398)
Q Consensus        38 ~~~v-GR~~~--~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~~~~~~~~~~  112 (398)
                      ++|| |....  ...+......  .. ....+.|+|++|+||||||+.+++.  ....+..  .+++.       ...+.
T Consensus       105 d~fv~g~~n~~a~~~~~~~a~~--~~-~~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~-------~~~~~  172 (440)
T 2z4s_A          105 ENFVVGPGNSFAYHAALEVAKH--PG-RYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT-------SEKFL  172 (440)
T ss_dssp             GGCCCCTTTHHHHHHHHHHHHS--TT-SSCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEE-------HHHHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhC--CC-CCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee-------HHHHH
Confidence            4566 64433  3334443332  11 2678999999999999999999886  4333322  33443       22233


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCCh-
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNE-  185 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~-  185 (398)
                      ..+...+...          .    ...+...+..++.+|+|||++..    ...+.+...+.  ...|..||+||++. 
T Consensus       173 ~~~~~~~~~~----------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~  238 (440)
T 2z4s_A          173 NDLVDSMKEG----------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP  238 (440)
T ss_dssp             HHHHHHHHTT----------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred             HHHHHHHHcc----------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence            3344333211          1    12233444447889999999732    23333433332  24577899998862 


Q ss_pred             --------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          186 --------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       186 --------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                              .+...+ .....+.+++++. ++...++.+.+...+...++   +....|++.+.|.+..+..
T Consensus       239 ~~l~~l~~~L~sR~-~~g~~i~l~~p~~-e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~  304 (440)
T 2z4s_A          239 QKLSEFQDRLVSRF-QMGLVAKLEPPDE-ETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG  304 (440)
T ss_dssp             GGCSSCCHHHHHHH-HSSBCCBCCCCCH-HHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred             HHHHHHHHHHHhhc-cCCeEEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence                    333333 2245788999988 66777777644322222222   2566788888888876544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.83  E-value=1.7e-08  Score=92.13  Aligned_cols=127  Identities=17%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------ceEEEEecCCcc-------c-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------PRIWVCTMSGQK-------T-------------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------~~~~v~~v~~~~-------~-------------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .++           .+.++   .+..       +             
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v---~q~~~~~~~~~tv~enl~~~~~~~~  108 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIA---FQYPEDQFFAERVFDEVAFAVKNFY  108 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEE---CSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEE---eccchhhcCCCcHHHHHHHHHHhcC
Confidence            45689999999999999999996541100 0  010           11222   1110       0             


Q ss_pred             ----HHHHHHHHHHHcCCC--CC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891          108 ----AESIVKRILKRLGVD--DG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG  175 (398)
Q Consensus       108 ----~~~~~~~il~~l~~~--~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g  175 (398)
                          ......++++.+++.  .. .......+++++++..+.+.|..++-+++||++.   |....+.+...+.  ...|
T Consensus       109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g  188 (266)
T 2yz2_A          109 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG  188 (266)
T ss_dssp             TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence                122345677888876  32 3334458999999999999999999999999999   4444444444432  1237


Q ss_pred             CEEEEEeCChHHHHHh
Q 015891          176 ERLIITSRNEKLTTEM  191 (398)
Q Consensus       176 s~IIiTTR~~~v~~~~  191 (398)
                      ..||++||+.+.+..+
T Consensus       189 ~tii~vtHd~~~~~~~  204 (266)
T 2yz2_A          189 KTVILISHDIETVINH  204 (266)
T ss_dssp             CEEEEECSCCTTTGGG
T ss_pred             CEEEEEeCCHHHHHHh
Confidence            8999999998766654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.83  E-value=2.2e-08  Score=90.87  Aligned_cols=81  Identities=14%  Similarity=0.114  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          111 IVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       111 ~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ...++++.+++... .......+.+++++..+++.+..++-+|+||++.   |....+.+...+.  ...|..||++||+
T Consensus       133 ~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  212 (257)
T 1g6h_A          133 KAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR  212 (257)
T ss_dssp             HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            45667788887643 2333458999999999999999999999999999   4444443333332  1237899999999


Q ss_pred             hHHHHHh
Q 015891          185 EKLTTEM  191 (398)
Q Consensus       185 ~~v~~~~  191 (398)
                      .+.+..+
T Consensus       213 ~~~~~~~  219 (257)
T 1g6h_A          213 LDIVLNY  219 (257)
T ss_dssp             CSTTGGG
T ss_pred             HHHHHHh
Confidence            8766554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.83  E-value=2e-08  Score=94.90  Aligned_cols=131  Identities=14%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc------------eEEEEe---cCCcccHH--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP------------RIWVCT---MSGQKTAE--------------  109 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~------------~~~v~~---v~~~~~~~--------------  109 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|+.            +.++..   +....+..              
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~  104 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence            346899999999999999999976421100   0110            112110   00000110              


Q ss_pred             -HHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          110 -SIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       110 -~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                       +...++++.+++.... ......+++++++..+.+.|..++-+|+||++.   |....+.+...+.   ...|.+||++
T Consensus       105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v  184 (348)
T 3d31_A          105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (348)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence             3355678888876532 334458999999999999999999999999998   4443333333332   2347899999


Q ss_pred             eCChHHHHHhc
Q 015891          182 SRNEKLTTEMV  192 (398)
Q Consensus       182 TR~~~v~~~~~  192 (398)
                      ||+...+..++
T Consensus       185 THd~~~~~~~a  195 (348)
T 3d31_A          185 THDQTEARIMA  195 (348)
T ss_dssp             ESCHHHHHHHC
T ss_pred             eCCHHHHHHhC
Confidence            99988776653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.82  E-value=1.9e-08  Score=90.09  Aligned_cols=133  Identities=14%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE----EecCCcc-----cHH-----------HHHHHHHHH---
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV----CTMSGQK-----TAE-----------SIVKRILKR---  118 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v----~~v~~~~-----~~~-----------~~~~~il~~---  118 (398)
                      .-.+++|+|++|+|||||++.+..-  .. ...+.+++    .++.+..     +..           .....++..   
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l  106 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAE--MD-KVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL  106 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTC--SE-EEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhh
Confidence            4468999999999999999999775  21 11222211    1122211     010           111222222   


Q ss_pred             ---cCCCC------CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC----CCCCCEEEEEe
Q 015891          119 ---LGVDD------GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP----RGYGERLIITS  182 (398)
Q Consensus       119 ---l~~~~------~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~----~~~gs~IIiTT  182 (398)
                         ++...      ........+++++++..+++.+..++-+++||++.   |......+...+.    ...+..||++|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivt  186 (237)
T 2cbz_A          107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT  186 (237)
T ss_dssp             HHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEEC
T ss_pred             HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence               22211      01223458999999999999999999999999999   5555555555551    23478999999


Q ss_pred             CChHHHHHhcCCCceEEc
Q 015891          183 RNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       183 R~~~v~~~~~~~~~~~~l  200 (398)
                      |+.+.+..   .++++.+
T Consensus       187 H~~~~~~~---~d~v~~l  201 (237)
T 2cbz_A          187 HSMSYLPQ---VDVIIVM  201 (237)
T ss_dssp             SCSTTGGG---SSEEEEE
T ss_pred             cChHHHHh---CCEEEEE
Confidence            99876543   2444444

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.82  E-value=6.8e-09  Score=92.66  Aligned_cols=169  Identities=16%  Similarity=0.113  Sum_probs=96.9

Q ss_pred             CCcccch---hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFA---NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~---~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      ++|+|.+   ..++.+..++..    .....+.|+|++|+||||||+.+++.  .........++. .......      
T Consensus        28 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~-~~~~~~~------   94 (242)
T 3bos_A           28 TSYYPAAGNDELIGALKSAASG----DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIP-LGIHASI------   94 (242)
T ss_dssp             TTSCC--CCHHHHHHHHHHHHT----CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-GGGGGGS------
T ss_pred             hhccCCCCCHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE-HHHHHHH------
Confidence            5688743   556666666643    35678999999999999999999876  332223345555 3321100      


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCC-CEEEEEeCCh--
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYG-ERLIITSRNE--  185 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~g-s~IIiTTR~~--  185 (398)
                          +  .         ..       + .. ..++.+||+||++..    .+.+.+...+.  ...+ .++|+||+..  
T Consensus        95 ----~--~---------~~-------~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~  150 (242)
T 3bos_A           95 ----S--T---------AL-------L-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPM  150 (242)
T ss_dssp             ----C--G---------GG-------G-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred             ----H--H---------HH-------H-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence                0  0         00       0 00 134689999999832    22344443332  1122 2477777632  


Q ss_pred             -------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          186 -------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       186 -------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                             .+...+ .....+++.+++. ++...++.+.+...+...++   +....|++.+.|.+..+..
T Consensus       151 ~~~~~~~~l~~r~-~~~~~i~l~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~  215 (242)
T 3bos_A          151 EAGFVLPDLVSRM-HWGLTYQLQPMMD-DEKLAALQRRAAMRGLQLPE---DVGRFLLNRMARDLRTLFD  215 (242)
T ss_dssp             TTTCCCHHHHHHH-HHSEEEECCCCCG-GGHHHHHHHHHHHTTCCCCH---HHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHhhhhhhhHh-hcCceEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHccCCHHHHHH
Confidence                   222222 1126899999999 66777777654322222222   3566788888888876654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.82  E-value=1.1e-07  Score=84.84  Aligned_cols=133  Identities=16%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----EEecCCcc-----cHH-----------HHHHHHHHHcCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----VCTMSGQK-----TAE-----------SIVKRILKRLGV  121 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----v~~v~~~~-----~~~-----------~~~~~il~~l~~  121 (398)
                      .-.+++|+|++|+|||||++.++.-  ... ..+.++    +.++.+..     +..           ......+..+++
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p-~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l  109 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGE--LEP-SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL  109 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS--SCC-SEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC--CcC-CccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCc
Confidence            3468999999999999999999875  211 112111    11122211     111           111223333222


Q ss_pred             CC------C------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC-CCCCCEEEEEeCC
Q 015891          122 DD------G------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP-RGYGERLIITSRN  184 (398)
Q Consensus       122 ~~------~------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~-~~~gs~IIiTTR~  184 (398)
                      ..      .      .......+.+++++..+++.+..++-+++||++.   |....+.+... +. ...+..||++||+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~  189 (229)
T 2pze_A          110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK  189 (229)
T ss_dssp             HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred             HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCC
Confidence            11      0      0112358999999999999999999999999999   55666666654 32 2347899999999


Q ss_pred             hHHHHHhcCCCceEEc
Q 015891          185 EKLTTEMVGEENLHQL  200 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l  200 (398)
                      .+.+..   .++++.+
T Consensus       190 ~~~~~~---~d~v~~l  202 (229)
T 2pze_A          190 MEHLKK---ADKILIL  202 (229)
T ss_dssp             HHHHHH---CSEEEEE
T ss_pred             hHHHHh---CCEEEEE
Confidence            877654   2444444

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.81  E-value=2.1e-08  Score=95.03  Aligned_cols=132  Identities=15%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cc------------cceEEEEe---cCCc---------------ccH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QF------------VPRIWVCT---MSGQ---------------KTA  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F------------~~~~~v~~---v~~~---------------~~~  108 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|            ..+.++..   +...               ...
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  107 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK  107 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            456899999999999999999975311000   00            01112110   0000               000


Q ss_pred             ---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          109 ---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       109 ---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                         .....++++.+++... .......+++++++..+.+.|..++-+|+||++.   |....+.+...+.   ...|..+
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  187 (359)
T 2yyz_A          108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS  187 (359)
T ss_dssp             HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence               1345678888888653 3334458999999999999999999999999998   4433333333332   2237899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       188 i~vTHd~~~~~~~ad  202 (359)
T 2yyz_A          188 VYVTHDQAEAMTMAS  202 (359)
T ss_dssp             EEEESCHHHHHHHCS
T ss_pred             EEEcCCHHHHHHhCC
Confidence            999999887766543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.80  E-value=1.5e-08  Score=89.33  Aligned_cols=128  Identities=19%  Similarity=0.089  Sum_probs=79.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc---------ceEEEEecC---CcccH----------------HHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV---------PRIWVCTMS---GQKTA----------------ESI  111 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~---------~~~~v~~v~---~~~~~----------------~~~  111 (398)
                      -.+++|+|++|+|||||++.++.-.... .  .|.         .+.++..-.   ...+.                ...
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~  114 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE  114 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHH
Confidence            4579999999999999999997642110 0  011         112221000   00011                223


Q ss_pred             HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891          112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP--RGYGERLIITSRNEK  186 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~--~~~gs~IIiTTR~~~  186 (398)
                      ..++++.+++..........+.+++++..+.+.+..++-+++||++.+   ....+.+...+.  ...|..||++||+.+
T Consensus       115 ~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~  194 (214)
T 1sgw_A          115 IMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL  194 (214)
T ss_dssp             HHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred             HHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            456777788765422334589999999999999999999999999983   322222222221  123678999999976


Q ss_pred             HHHH
Q 015891          187 LTTE  190 (398)
Q Consensus       187 v~~~  190 (398)
                      .+..
T Consensus       195 ~~~~  198 (214)
T 1sgw_A          195 SYCD  198 (214)
T ss_dssp             TTSS
T ss_pred             HHHH
Confidence            5443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.80  E-value=3.5e-08  Score=89.20  Aligned_cols=88  Identities=19%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCC-C-CCCCCcC-CCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          112 VKRILKRLGVD-D-GTTNSFE-GQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       112 ~~~il~~l~~~-~-~~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ..++++.+++. . ....... .+.+++++..+.+.|..++-+|+||++.   |....+.+...+.  ...|..||++||
T Consensus       122 ~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH  201 (250)
T 2d2e_A          122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH  201 (250)
T ss_dssp             HHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred             HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            34566777773 2 2233344 7999999999999999999999999999   4444444443332  235789999999


Q ss_pred             ChHHHHHhcCCCceEEc
Q 015891          184 NEKLTTEMVGEENLHQL  200 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l  200 (398)
                      +.+.+..+ ..++++.+
T Consensus       202 d~~~~~~~-~~d~v~~l  217 (250)
T 2d2e_A          202 YQRILNYI-QPDKVHVM  217 (250)
T ss_dssp             SSGGGGTS-CCSEEEEE
T ss_pred             CHHHHHHh-cCCEEEEE
Confidence            98766543 12344444

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.79  E-value=2.9e-08  Score=94.80  Aligned_cols=203  Identities=14%  Similarity=0.175  Sum_probs=105.4

Q ss_pred             CCCcccchhhHHHHH---HHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe---cCCcccHHH
Q 015891           37 PANVHGFANEELHLQ---KLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT---MSGQKTAES  110 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~---~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~---v~~~~~~~~  110 (398)
                      .++|+|++..++.+.   ..+..  .....+.+.|+|++|+|||+||+.+++.  ...... .+.+..   .+.......
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~--~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~  117 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIRE--GKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTE  117 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHT--TCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhH
Confidence            467999999877744   44433  2223468999999999999999999887  322111 111110   112223333


Q ss_pred             HHHHHHHHc-CCC--------------------CC----CCCCcCCCchHHHHHHHHHHH-----hCC----CcEEEecC
Q 015891          111 IVKRILKRL-GVD--------------------DG----TTNSFEGQGLAFLDYVLQQQL-----IGK----RYLIVLDD  156 (398)
Q Consensus       111 ~~~~il~~l-~~~--------------------~~----~~~~~~~~~~~~~~~~l~~~l-----~~k----~~LlVLDd  156 (398)
                      .+...+... +..                    ..    .............+..+....     .++    +.+|++||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE  197 (368)
T 3uk6_A          118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE  197 (368)
T ss_dssp             HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred             HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence            333333321 110                    00    000000011222333332222     122    46999999


Q ss_pred             CC--CHHHHHHHHhHcCCCCCCEEEEEeCC-------------hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCC
Q 015891          157 FE--DMEVCKHLSKVLPRGYGERLIITSRN-------------EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKD  221 (398)
Q Consensus       157 v~--~~~~~~~l~~~l~~~~gs~IIiTTR~-------------~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~  221 (398)
                      ++  +.+....+...+.......++++|..             ..+...+......+.++|++. ++...++.+.+....
T Consensus       198 i~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~-~e~~~il~~~~~~~~  276 (368)
T 3uk6_A          198 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSE-KDTKQILRIRCEEED  276 (368)
T ss_dssp             GGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCH-HHHHHHHHHHHHHTT
T ss_pred             ccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCH-HHHHHHHHHHHHHcC
Confidence            99  44655666666654333445555531             111111223334589999988 667777776544333


Q ss_pred             CcchHHHHHHHHHHHHhcC-CCchhhhc
Q 015891          222 AQLKSQARKDLEEKLEKLQ-GQNEDAVN  248 (398)
Q Consensus       222 ~~~~~~~~~~~~~I~~~c~-GlPlai~~  248 (398)
                      ...++   +....|++.+. |.|..+..
T Consensus       277 ~~~~~---~~l~~l~~~~~~G~~r~~~~  301 (368)
T 3uk6_A          277 VEMSE---DAYTVLTRIGLETSLRYAIQ  301 (368)
T ss_dssp             CCBCH---HHHHHHHHHHHHSCHHHHHH
T ss_pred             CCCCH---HHHHHHHHHhcCCCHHHHHH
Confidence            33333   35667778887 77776554

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.78  E-value=7.6e-09  Score=98.56  Aligned_cols=132  Identities=13%  Similarity=0.106  Sum_probs=85.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cc------------cceEEEEe-------cC--C---------ccc-
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QF------------VPRIWVCT-------MS--G---------QKT-  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F------------~~~~~v~~-------v~--~---------~~~-  107 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|            ..+.++..       .+  +         ... 
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~  115 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK  115 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence            456899999999999999999965311000   00            01111110       00  0         001 


Q ss_pred             --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                        ..+...++++.+++... .......+++++++..+.+.|..++-+|+||++.   |....+.+...+.   ...|..|
T Consensus       116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  195 (372)
T 1v43_A          116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT  195 (372)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence              12346678888887653 3334458999999999999999999999999998   4443333333332   2237899


Q ss_pred             EEEeCChHHHHHhcC
Q 015891          179 IITSRNEKLTTEMVG  193 (398)
Q Consensus       179 IiTTR~~~v~~~~~~  193 (398)
                      |++||+...+..+++
T Consensus       196 i~vTHd~~~a~~~ad  210 (372)
T 1v43_A          196 IYVTHDQVEAMTMGD  210 (372)
T ss_dssp             EEEESCHHHHHHHCS
T ss_pred             EEEeCCHHHHHHhCC
Confidence            999999887766543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.78  E-value=3.8e-08  Score=93.85  Aligned_cols=132  Identities=17%  Similarity=0.174  Sum_probs=85.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccceEE---------------EEecCCc------cc----------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPRIW---------------VCTMSGQ------KT----------  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~---------------v~~v~~~------~~----------  107 (398)
                      .-.+++|+|++|+|||||++.++.-.....   .|+..-+               +.++.+.      .+          
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  107 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK  107 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            346899999999999999999975421100   0111000               1111111      01          


Q ss_pred             --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                              ..+...++++.+++... .......+++++++..+.+.|..++-+|+||++.   |......+...+.   .
T Consensus       108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  187 (372)
T 1g29_1          108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR  187 (372)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence                    11235567788887653 2334458999999999999999999999999998   4433333333332   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..|..||++||+...+..+++
T Consensus       188 ~~g~tvi~vTHd~~~a~~~ad  208 (372)
T 1g29_1          188 QLGVTTIYVTHDQVEAMTMGD  208 (372)
T ss_dssp             HHTCEEEEEESCHHHHHHHCS
T ss_pred             hcCCEEEEECCCHHHHHHhCC
Confidence            237899999999888776543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.78  E-value=1.7e-08  Score=94.03  Aligned_cols=171  Identities=9%  Similarity=0.056  Sum_probs=101.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC---Cc---cccceEEEEecCCcccHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV---KT---QFVPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~---~F~~~~~v~~v~~~~~~~~~  111 (398)
                      ..+.||+++++.|...|...-.......+.|+|++|+|||++++.+++....   ..   .| ..+.+. .....+....
T Consensus        20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~IN-c~~~~t~~~~   97 (318)
T 3te6_A           20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHID-ALELAGMDAL   97 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEE-TTCCC--HHH
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEe-ccccCCHHHH
Confidence            3488999999999988876434567788999999999999999999876210   01   12 234555 5556677788


Q ss_pred             HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHH--HhCCCcEEEecCCCCHHHHHHHHhHc--CCCCCC--EEEEEeCCh
Q 015891          112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQ--LIGKRYLIVLDDFEDMEVCKHLSKVL--PRGYGE--RLIITSRNE  185 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVLDdv~~~~~~~~l~~~l--~~~~gs--~IIiTTR~~  185 (398)
                      +..|++++......    .....+.+...+...  -..++++++||+++.....+.|..++  +....+  .||.++.+.
T Consensus        98 ~~~I~~~L~g~~~~----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~  173 (318)
T 3te6_A           98 YEKIWFAISKENLC----GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN  173 (318)
T ss_dssp             HHHHHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred             HHHHHHHhcCCCCC----chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence            88999988543211    112222223333321  13567999999999531122233222  112233  344445443


Q ss_pred             HH----H-----HHhcCCCceEEcCCCCChhHHHHHHHhhh
Q 015891          186 KL----T-----TEMVGEENLHQLQPLSDQESCWLIYRDSV  217 (398)
Q Consensus       186 ~v----~-----~~~~~~~~~~~l~~L~~~e~~~~l~~~~~  217 (398)
                      +.    .     ..+  ....+.+.|.+. ++...++.+.+
T Consensus       174 d~~~~~L~~~v~SR~--~~~~i~F~pYt~-~el~~Il~~Rl  211 (318)
T 3te6_A          174 VTIREQINIMPSLKA--HFTEIKLNKVDK-NELQQMIITRL  211 (318)
T ss_dssp             CCCHHHHHTCHHHHT--TEEEEECCCCCH-HHHHHHHHHHH
T ss_pred             ccchhhcchhhhccC--CceEEEeCCCCH-HHHHHHHHHHH
Confidence            21    1     121  125789999999 66777666543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.77  E-value=1.5e-08  Score=99.31  Aligned_cols=173  Identities=18%  Similarity=0.268  Sum_probs=100.7

Q ss_pred             CCcccchhhH---HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFANEE---LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      ++++|.+..+   ..|...+..    .....+.|+|++|+||||||+.+++.  ....|.   .+. .. ..... .+..
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~----~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f~---~l~-a~-~~~~~-~ir~   93 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEA----GHLHSMILWGPPGTGKTTLAEVIARY--ANADVE---RIS-AV-TSGVK-EIRE   93 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHH----TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEEE---EEE-TT-TCCHH-HHHH
T ss_pred             HHhCCcHHHHhchHHHHHHHHc----CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCeE---EEE-ec-cCCHH-HHHH
Confidence            6789999888   778888865    34578999999999999999999987  333332   112 11 11111 1111


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcCCCCCCEEEE-EeCChH--HHH
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLPRGYGERLII-TSRNEK--LTT  189 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~gs~IIi-TTR~~~--v~~  189 (398)
                      ++..                     ........++.+|++||++..  ...+.|...+..+ ...+|. ||.+..  +..
T Consensus        94 ~~~~---------------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~  151 (447)
T 3pvs_A           94 AIER---------------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNS  151 (447)
T ss_dssp             HHHH---------------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCH
T ss_pred             HHHH---------------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCH
Confidence            1111                     001112356889999999943  3333344444332 334444 544432  222


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCC-------CCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRD-------KDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+.....++.+.+++. ++...++.+.+..       .....   ..+..+.|++.+.|.+..+..
T Consensus       152 aL~sR~~v~~l~~l~~-edi~~il~~~l~~~~~~~~~~~~~i---~~~al~~L~~~~~Gd~R~lln  213 (447)
T 3pvs_A          152 ALLSRARVYLLKSLST-EDIEQVLTQAMEDKTRGYGGQDIVL---PDETRRAIAELVNGDARRALN  213 (447)
T ss_dssp             HHHTTEEEEECCCCCH-HHHHHHHHHHHHCTTTSSTTSSEEC---CHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHhCceeEEeeCCcCH-HHHHHHHHHHHHHHhhhhccccCcC---CHHHHHHHHHHCCCCHHHHHH
Confidence            2224456889999998 6677777775543       11222   233667778888888876554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.77  E-value=4.9e-08  Score=89.81  Aligned_cols=184  Identities=15%  Similarity=0.226  Sum_probs=102.8

Q ss_pred             CCCCCCcccchhhHHHHHHHHhccC---------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC
Q 015891           34 SKPPANVHGFANEELHLQKLLSNRG---------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG  104 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~l~~~L~~~~---------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~  104 (398)
                      ....++++|.+..++.|.+.+....         .......+.|+|++|+|||+||+.+++.  ....|   +.+. ...
T Consensus        13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~-~~~   86 (285)
T 3h4m_A           13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVV-GSE   86 (285)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEE-GGG
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-hHH
Confidence            3445789999999999998874310         1134567999999999999999999887  33222   2222 111


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc-
Q 015891          105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL-  170 (398)
Q Consensus       105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l-  170 (398)
                      -..              .      ............+.......+.+|+|||++..             .....+...+ 
T Consensus        87 ~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~  146 (285)
T 3h4m_A           87 LVK--------------K------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA  146 (285)
T ss_dssp             GCC--------------C------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred             HHH--------------h------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence            000              0      00011222233344444567789999999743             1122222222 


Q ss_pred             -----CCCCCCEEEEEeCChHHHH-Hhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCC
Q 015891          171 -----PRGYGERLIITSRNEKLTT-EMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQG  241 (398)
Q Consensus       171 -----~~~~gs~IIiTTR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~G  241 (398)
                           ....+..||.||....... .+.   .....+.+++.+. ++...++...+.......+.    ....+++.+.|
T Consensus       147 ~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g  221 (285)
T 3h4m_A          147 EMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDE-KGRLEILKIHTRKMNLAEDV----NLEEIAKMTEG  221 (285)
T ss_dssp             HHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCH-HHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTT
T ss_pred             HhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCH-HHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCC
Confidence                 2234567788887543211 111   1234688988887 66777877755443222111    34567777777


Q ss_pred             C-chhhhc
Q 015891          242 Q-NEDAVN  248 (398)
Q Consensus       242 l-Plai~~  248 (398)
                      . |..|..
T Consensus       222 ~~~~~i~~  229 (285)
T 3h4m_A          222 CVGAELKA  229 (285)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            4 334433

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.76  E-value=4e-08  Score=93.14  Aligned_cols=190  Identities=13%  Similarity=0.136  Sum_probs=105.3

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc-eEEEEecCCcccHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP-RIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~-~~~v~~v~~~~~~~~~~~  113 (398)
                      ..+++|++..++.+..++..    .....+.|+|++|+||||+|+.+++.  +..  .+.. ...+. .+....... +.
T Consensus        36 ~~~i~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~~~~~~~~~-~~~~~~~~~-~~  107 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLKS----ANLPHMLFYGPPGTGKTSTILALTKE--LYGPDLMKSRILELN-ASDERGISI-VR  107 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTTC----TTCCCEEEECSTTSSHHHHHHHHHHH--HHHHHHHTTSEEEEC-SSSCCCHHH-HT
T ss_pred             HHHhhCCHHHHHHHHHHHhc----CCCCEEEEECCCCCCHHHHHHHHHHH--hCCCcccccceEEEc-cccccchHH-HH
Confidence            36799999999999999864    22333899999999999999999876  221  1211 22222 222222222 11


Q ss_pred             HHHHHcC-CCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HH
Q 015891          114 RILKRLG-VDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LT  188 (398)
Q Consensus       114 ~il~~l~-~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~  188 (398)
                      ..+..+. ......    ...      .....-..++.+|++||++.  ....+.+...+. .....++|++|.... +.
T Consensus       108 ~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~  177 (353)
T 1sxj_D          108 EKVKNFARLTVSKP----SKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII  177 (353)
T ss_dssp             THHHHHHHSCCCCC----CTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             HHHHHHhhhccccc----chh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCc
Confidence            1111111 000000    000      00001123456999999983  444455555543 234567777775432 22


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+......+.+.|++. ++....+.+.+...+...++   +..+.|++.++|.|..+..
T Consensus       178 ~~l~sR~~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~  233 (353)
T 1sxj_D          178 DPLASQCSKFRFKALDA-SNAIDRLRFISEQENVKCDD---GVLERILDISAGDLRRGIT  233 (353)
T ss_dssp             HHHHHHSEEEECCCCCH-HHHHHHHHHHHHTTTCCCCH---HHHHHHHHHTSSCHHHHHH
T ss_pred             chhhccCceEEeCCCCH-HHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            22222234789999998 55666666654333322223   3667888899999887554

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.75  E-value=1.7e-08  Score=86.54  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=39.8

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.++||++.++.+.+.+..    .....+.|+|++|+|||+||+.+++.
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            36799999999999999854    44567899999999999999999775

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.73  E-value=4.2e-08  Score=92.93  Aligned_cols=132  Identities=18%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEe---cCCc-------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCT---MSGQ-------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~---v~~~-------------  105 (398)
                      .-.+++|+|++|+|||||++.++.-.... .  .|+                 .+.++..   +...             
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  109 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN  109 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence            44689999999999999999997531110 0  011                 1112210   0000             


Q ss_pred             --cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891          106 --KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG  173 (398)
Q Consensus       106 --~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~  173 (398)
                        ..   ..+...++++.+++... .......+++++++..+++.|..++-+|+||++.   |....+.+...+.   ..
T Consensus       110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  189 (353)
T 1oxx_K          110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR  189 (353)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence              01   12345678888888653 2334458999999999999999999999999998   3322222222221   22


Q ss_pred             CCCEEEEEeCChHHHHHhcC
Q 015891          174 YGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~  193 (398)
                      .|..||++||+.+.+..+++
T Consensus       190 ~g~tvi~vTHd~~~~~~~ad  209 (353)
T 1oxx_K          190 LGVTLLVVSHDPADIFAIAD  209 (353)
T ss_dssp             HCCEEEEEESCHHHHHHHCS
T ss_pred             cCCEEEEEeCCHHHHHHhCC
Confidence            37889999999887766543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.73  E-value=2.8e-08  Score=93.11  Aligned_cols=172  Identities=15%  Similarity=0.134  Sum_probs=102.3

Q ss_pred             CCCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      .++|+|++..++.+..++.... .......+.|+|++|+|||+||+.+++.  ....   ..++. .........     
T Consensus        11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~-~~~~~~~~~-----   79 (324)
T 1hqc_A           11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTS-GPAIEKPGD-----   79 (324)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEEC-TTTCCSHHH-----
T ss_pred             HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEe-ccccCChHH-----
Confidence            3679999999999988886410 1123467899999999999999999886  2222   22333 222111111     


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHHh---CCCcEEEecCCCCH--HHHHHHHhHcCCC-----------------
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI---GKRYLIVLDDFEDM--EVCKHLSKVLPRG-----------------  173 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~~--~~~~~l~~~l~~~-----------------  173 (398)
                                               +...+.   .++.+|+|||++..  .....+...+...                 
T Consensus        80 -------------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~  134 (324)
T 1hqc_A           80 -------------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL  134 (324)
T ss_dssp             -------------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred             -------------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence                                     111221   35679999999843  3333333333210                 


Q ss_pred             --CCCEEEEEeCChH-HHHHhcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          174 --YGERLIITSRNEK-LTTEMVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       174 --~gs~IIiTTR~~~-v~~~~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                        ++.++|.||.... +...+... ...+.+.+++. ++...++.+.+.......++   +....+++.+.|.|..+..
T Consensus       135 ~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~-~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~  209 (324)
T 1hqc_A          135 ELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP-EELAQGVMRDARLLGVRITE---EAALEIGRRSRGTMRVAKR  209 (324)
T ss_dssp             ECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCH-HHHHHHHHHHHHTTTCCCCH---HHHHHHHHHSCSCHHHHHH
T ss_pred             CCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHccCCHHHHHH
Confidence              2356777766432 11111122 35889999998 66777777755433333222   3667788889999976554

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.72  E-value=9e-08  Score=87.49  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=51.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+.+.|..++-+|+||++.   |......+...+.   ...|..||++||+...+..   .++++.+
T Consensus       155 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~---~d~v~~l  229 (271)
T 2ixe_A          155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER---AHHILFL  229 (271)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT---CSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh---CCEEEEE
Confidence            458999999999999999999999999999   4544444444443   2237899999999887653   3445544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.72  E-value=2.5e-08  Score=91.50  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             HHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE--EEEe
Q 015891          111 IVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL--IITS  182 (398)
Q Consensus       111 ~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I--IiTT  182 (398)
                      ...++++.+++... .......+.+++++..+++.+..++-+|+||++.   |....+.+...+.  ...|..|  |++|
T Consensus       141 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt  220 (279)
T 2ihy_A          141 EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT  220 (279)
T ss_dssp             HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence            34567777887543 2333458999999999999999999999999999   4444443333332  1226678  9999


Q ss_pred             CChHHHHHh
Q 015891          183 RNEKLTTEM  191 (398)
Q Consensus       183 R~~~v~~~~  191 (398)
                      |+.+.+..+
T Consensus       221 Hd~~~~~~~  229 (279)
T 2ihy_A          221 HFIEEITAN  229 (279)
T ss_dssp             SCGGGCCTT
T ss_pred             cCHHHHHHh
Confidence            998765443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.70  E-value=5.4e-08  Score=87.72  Aligned_cols=69  Identities=12%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++.+..++-+|+||++.   |......+...+. ...|..||++||+...+..   .++++.+
T Consensus       144 ~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~---~d~v~~l  216 (247)
T 2ff7_A          144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN---ADRIIVM  216 (247)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT---SSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh---CCEEEEE
Confidence            358999999999999999999999999999   4433333333332 1247899999999876543   3445544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.69  E-value=1.1e-07  Score=96.48  Aligned_cols=136  Identities=18%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-ceEEEEecC---CcccHH--------------HHHHHHHHHcCC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-PRIWVCTMS---GQKTAE--------------SIVKRILKRLGV  121 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-~~~~v~~v~---~~~~~~--------------~~~~~il~~l~~  121 (398)
                      -.+++|+|++|+|||||++.++.-... ...  +. .+.++..-.   ...+..              ....+++..+++
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l  461 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI  461 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999875211 111  11 122221000   011111              123456677777


Q ss_pred             CCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891          122 DDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       122 ~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ..... .....+++++++..++++|..++-+|+||++.   |......+...+.   ...|..||++||+...+..++  
T Consensus       462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a--  539 (607)
T 3bk7_A          462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS--  539 (607)
T ss_dssp             TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC--
T ss_pred             chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence            64322 33458999999999999999999999999999   4444333433332   234788999999998887764  


Q ss_pred             CceEEc
Q 015891          195 ENLHQL  200 (398)
Q Consensus       195 ~~~~~l  200 (398)
                      ++++.+
T Consensus       540 drv~vl  545 (607)
T 3bk7_A          540 DRLIVF  545 (607)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            344444

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.68  E-value=7.1e-08  Score=86.78  Aligned_cols=133  Identities=11%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC----------------ccc-cceEEEEe--------cCC-------cccHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK----------------TQF-VPRIWVCT--------MSG-------QKTAE  109 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~----------------~~F-~~~~~v~~--------v~~-------~~~~~  109 (398)
                      .-.+++|+|++|+|||||++.++.-....                ..+ ..+.++..        +.+       .....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~  106 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD  106 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCH
Confidence            45689999999999999999996431100                000 00112110        100       00112


Q ss_pred             HHHHHHHHHcCCCCCCC------------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHc
Q 015891          110 SIVKRILKRLGVDDGTT------------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVL  170 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~------------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l  170 (398)
                      .....++..+++.....            .....+.+++++..+++.+..++-+++||++.+.       ...+.+....
T Consensus       107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM  186 (243)
T ss_dssp             HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence            33455666666543211            1235899999999999999999999999999832       4444444332


Q ss_pred             CCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          171 PRGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       171 ~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                         .|..||++||+...+..   .++++.+
T Consensus       187 ---~~~tvi~vtH~~~~~~~---~d~v~~l  210 (243)
T 1mv5_A          187 ---KGRTTLVIAHRLSTIVD---ADKIYFI  210 (243)
T ss_dssp             ---TTSEEEEECCSHHHHHH---CSEEEEE
T ss_pred             ---CCCEEEEEeCChHHHHh---CCEEEEE
Confidence               37899999999887654   2444444

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.68  E-value=4.9e-08  Score=92.15  Aligned_cols=172  Identities=15%  Similarity=0.119  Sum_probs=102.8

Q ss_pred             CCCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i  115 (398)
                      .++++|++..++.+..++.... .......+.|+|++|+|||+||+.+++.  ....|   +.+. .......       
T Consensus        28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~-~~~~~~~-------   94 (338)
T 3pfi_A           28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTA-APMIEKS-------   94 (338)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEE-GGGCCSH-------
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEec-chhccch-------
Confidence            3679999999999999887510 1234567899999999999999999876  33332   2222 2111110       


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCCcEEEecCCCC--HHHHHHHHhHcCCC------------------
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFED--MEVCKHLSKVLPRG------------------  173 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~--~~~~~~l~~~l~~~------------------  173 (398)
                                         .    .+...+  ..+..+|+|||++.  ......+...+...                  
T Consensus        95 -------------------~----~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  151 (338)
T 3pfi_A           95 -------------------G----DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID  151 (338)
T ss_dssp             -------------------H----HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred             -------------------h----HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence                               0    111122  23578999999994  34444444333211                  


Q ss_pred             -CCCEEEEEeCChH-HHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          174 -YGERLIITSRNEK-LTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       174 -~gs~IIiTTR~~~-v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                       ++..+|.+|.... +...+.. ....+.+.+++. ++...++.+.........++   +....|++.+.|.|..+..
T Consensus       152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~-~e~~~il~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~  225 (338)
T 3pfi_A          152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD-SELALILQKAALKLNKTCEE---KAALEIAKRSRSTPRIALR  225 (338)
T ss_dssp             CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHTTCEECH---HHHHHHHHTTTTCHHHHHH
T ss_pred             CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHCcCHHHHHH
Confidence             1246666665532 1111112 246899999988 66777777654433322222   3566788889999866554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.67  E-value=3.1e-07  Score=86.18  Aligned_cols=177  Identities=15%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             CCCcc-cch--hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHH
Q 015891           37 PANVH-GFA--NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        37 ~~~~v-GR~--~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~  113 (398)
                      .++|+ |..  .....+..++..  .......+.|+|++|+||||||+.+++.  ....-...++++ .      .....
T Consensus        10 f~~fv~g~~~~~a~~~~~~~~~~--~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~-~------~~~~~   78 (324)
T 1l8q_A           10 LENFIVGEGNRLAYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSS-A------DDFAQ   78 (324)
T ss_dssp             SSSCCCCTTTHHHHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEE-H------HHHHH
T ss_pred             cccCCCCCcHHHHHHHHHHHHhC--cCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE-H------HHHHH
Confidence            35565 533  233445555543  2224567999999999999999999876  221111233443 2      22233


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCCh--
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNE--  185 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~--  185 (398)
                      .+...+...          .    ...+...+ .++.+|++||++..    ...+.+...+.  ...+..||+||...  
T Consensus        79 ~~~~~~~~~----------~----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~  143 (324)
T 1l8q_A           79 AMVEHLKKG----------T----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ  143 (324)
T ss_dssp             HHHHHHHHT----------C----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred             HHHHHHHcC----------c----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence            333322110          0    11222223 24789999999732    23333333332  23466788887632  


Q ss_pred             -------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          186 -------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       186 -------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                             .+...+ .....++++| +. ++...++.+.+.......++   +....|++.+ |....+
T Consensus       144 ~l~~l~~~L~sR~-~~~~~i~l~~-~~-~e~~~il~~~~~~~~~~l~~---~~l~~l~~~~-g~~r~l  204 (324)
T 1l8q_A          144 KLDGVSDRLVSRF-EGGILVEIEL-DN-KTRFKIIKEKLKEFNLELRK---EVIDYLLENT-KNVREI  204 (324)
T ss_dssp             GCTTSCHHHHHHH-HTSEEEECCC-CH-HHHHHHHHHHHHHTTCCCCH---HHHHHHHHHC-SSHHHH
T ss_pred             HHHHhhhHhhhcc-cCceEEEeCC-CH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHhC-CCHHHH
Confidence                   233333 2236789999 66 66777777654332223333   3556677777 776543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.66  E-value=2.1e-07  Score=86.56  Aligned_cols=163  Identities=14%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             CcccchhhHHHHHHHHhcc-----------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           39 NVHGFANEELHLQKLLSNR-----------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~-----------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      .++|.+..++.|.+++...           ........+.|+|++|+|||+||+.+++............++. +...  
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~-~~~~--  108 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVS-VTRD--  108 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEE-ECGG--
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEE-EcHH--
Confidence            5899999999988776521           0134456799999999999999998876511111111111222 2210  


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC-----------CHHHHHHHHhHcC-CCCC
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE-----------DMEVCKHLSKVLP-RGYG  175 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~-----------~~~~~~~l~~~l~-~~~g  175 (398)
                                .+...      ............+..   .++.+|+|||++           +......|...+. ...+
T Consensus       109 ----------~l~~~------~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~  169 (309)
T 3syl_A          109 ----------DLVGQ------YIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD  169 (309)
T ss_dssp             ----------GTCCS------STTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred             ----------Hhhhh------cccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence                      01000      000111122222222   246799999998           4455555555554 3446


Q ss_pred             CEEEEEeCChH----------HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHH
Q 015891          176 ERLIITSRNEK----------LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQ  227 (398)
Q Consensus       176 s~IIiTTR~~~----------v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~  227 (398)
                      ..||+||....          +...+   ...+.+++++. ++...++.+.+........+.
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~  227 (309)
T 3syl_A          170 LVVILAGYADRMENFFQSNPGFRSRI---AHHIEFPDYSD-EELFEIAGHMLDDQNYQMTPE  227 (309)
T ss_dssp             CEEEEEECHHHHHHHHHHSTTHHHHE---EEEEEECCCCH-HHHHHHHHHHHHHTTCEECHH
T ss_pred             EEEEEeCChHHHHHHHhhCHHHHHhC---CeEEEcCCcCH-HHHHHHHHHHHHHcCCCCCHH
Confidence            77888876432          22222   36889999998 667777776554333333443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.65  E-value=9e-08  Score=96.00  Aligned_cols=132  Identities=11%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC--CCc----------cccc----------------eEEEE-ecCCc-----cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD--VKT----------QFVP----------------RIWVC-TMSGQ-----KT  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~----------~F~~----------------~~~v~-~v~~~-----~~  107 (398)
                      .-.+++|+|++|+|||||++.+..-..  ...          .|..                ..++. ++...     ..
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~  125 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK  125 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence            456899999999999999999976411  000          0110                01111 00000     01


Q ss_pred             HHH---------HHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891          108 AES---------IVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R  172 (398)
Q Consensus       108 ~~~---------~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~  172 (398)
                      ...         ...+++..+++..... .....+++++++..|++.|..++-+|+||++.   |....+.+...+.  .
T Consensus       126 v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~  205 (538)
T 1yqt_A          126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS  205 (538)
T ss_dssp             HHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            111         2456788888865332 33358999999999999999999999999999   4443333322222  1


Q ss_pred             CCCCEEEEEeCChHHHHHhcC
Q 015891          173 GYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ..|..||++||+...+..+++
T Consensus       206 ~~g~tvi~vsHd~~~~~~~~d  226 (538)
T 1yqt_A          206 EEGKSVLVVEHDLAVLDYLSD  226 (538)
T ss_dssp             HTTCEEEEECSCHHHHHHHCS
T ss_pred             hcCCEEEEEeCCHHHHHHhCC
Confidence            247899999999988877543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.65  E-value=2.1e-07  Score=85.74  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=78.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----EEecCCcc-----cHHHH----------HHHHHHHcCCC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----VCTMSGQK-----TAESI----------VKRILKRLGVD  122 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----v~~v~~~~-----~~~~~----------~~~il~~l~~~  122 (398)
                      .-.+++|+|++|+|||||++.+..-  .. ...+.++    +.++.+..     +..+.          ....+..+++.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~  139 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE--LE-PSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE  139 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS--SC-EEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC--CC-CCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChH
Confidence            4568999999999999999999765  21 1111111    11122211     11111          11222222221


Q ss_pred             C-----C-------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC-CCCCCEEEEEeCCh
Q 015891          123 D-----G-------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP-RGYGERLIITSRNE  185 (398)
Q Consensus       123 ~-----~-------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~-~~~gs~IIiTTR~~  185 (398)
                      .     .       .......+++++++..+++.+..++-+++||++.   |....+.+... +. ...+..||++||+.
T Consensus       140 ~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~  219 (290)
T 2bbs_A          140 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM  219 (290)
T ss_dssp             HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred             HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence            1     0       0011358999999999999999999999999999   55555566554 22 23478999999998


Q ss_pred             HHHHH
Q 015891          186 KLTTE  190 (398)
Q Consensus       186 ~v~~~  190 (398)
                      +.+..
T Consensus       220 ~~~~~  224 (290)
T 2bbs_A          220 EHLKK  224 (290)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            87654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.64  E-value=7.4e-08  Score=96.59  Aligned_cols=136  Identities=18%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc-eEEEEecC---CcccHHHH--------------HHHHHHHcCC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP-RIWVCTMS---GQKTAESI--------------VKRILKRLGV  121 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-~~~v~~v~---~~~~~~~~--------------~~~il~~l~~  121 (398)
                      -.+++|+|++|+|||||++.++.-... ...  +.. +.++..-.   ...+....              ...++..+++
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l  391 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI  391 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999875211 111  111 22222000   01122221              2233344454


Q ss_pred             CCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891          122 DDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       122 ~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ... .......+++++++..++++|..++-+||||++.   |......+...+.   ...|..||++||+.+.+..++  
T Consensus       392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~--  469 (538)
T 1yqt_A          392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS--  469 (538)
T ss_dssp             GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC--
T ss_pred             hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence            332 2233458999999999999999999999999999   4444333433332   124788999999998887764  


Q ss_pred             CceEEc
Q 015891          195 ENLHQL  200 (398)
Q Consensus       195 ~~~~~l  200 (398)
                      ++++.+
T Consensus       470 drv~vl  475 (538)
T 1yqt_A          470 DRLMVF  475 (538)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            344444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.64  E-value=7.7e-07  Score=81.25  Aligned_cols=173  Identities=16%  Similarity=0.215  Sum_probs=98.7

Q ss_pred             CCCcccchhhHHHHHHH-------HhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH
Q 015891           37 PANVHGFANEELHLQKL-------LSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE  109 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~-------L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~  109 (398)
                      ...++|....++.+...       +.. ........+.|+|++|+|||+||+.+++.  ....|   +.+. ....    
T Consensus        32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~-~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~-~~~~----  100 (272)
T 1d2n_A           32 MNGIIKWGDPVTRVLDDGELLVQQTKN-SDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKIC-SPDK----  100 (272)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHHHHHHHH-CSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEE-CGGG----
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHhc-cCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-CHHH----
Confidence            45688988887776662       321 12456788999999999999999999886  22222   1222 1110    


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------------HHHHHHHhHcCC----C
Q 015891          110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------------EVCKHLSKVLPR----G  173 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------------~~~~~l~~~l~~----~  173 (398)
                              .++..       ...........+......++.+|+|||++..            ...+.+...+..    .
T Consensus       101 --------~~g~~-------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~  165 (272)
T 1d2n_A          101 --------MIGFS-------ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG  165 (272)
T ss_dssp             --------CTTCC-------HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTT
T ss_pred             --------hcCCc-------hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCC
Confidence                    00000       0001112223333444466889999998632            344555544431    2


Q ss_pred             CCCEEEEEeCChHHHHH--hcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          174 YGERLIITSRNEKLTTE--MVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~--~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      ....||.||........  +.+. ...+.+++++..++...++.+...   .  .   .+....|++.+.|.+
T Consensus       166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~---~--~---~~~~~~l~~~~~g~~  230 (272)
T 1d2n_A          166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN---F--K---DKERTTIAQQVKGKK  230 (272)
T ss_dssp             CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC---S--C---HHHHHHHHHHHTTSE
T ss_pred             CCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC---C--C---HHHHHHHHHHhcCCC
Confidence            23446777877765544  1222 567899999886666666665321   1  1   225667788888854

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.64  E-value=2.2e-07  Score=79.32  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=53.1

Q ss_pred             CCchHHHHHHHHHH-----HhCCCcEEEecC--CC---CHHHHHHHHhHcCCCCCCEEEEEe---CChHHHHHhcCC--C
Q 015891          131 GQGLAFLDYVLQQQ-----LIGKRYLIVLDD--FE---DMEVCKHLSKVLPRGYGERLIITS---RNEKLTTEMVGE--E  195 (398)
Q Consensus       131 ~~~~~~~~~~l~~~-----l~~k~~LlVLDd--v~---~~~~~~~l~~~l~~~~gs~IIiTT---R~~~v~~~~~~~--~  195 (398)
                      .+.+++++..+.+.     +..++-+++||+  +.   +....+.+...+.. .+..+|++|   ++..++..++..  .
T Consensus        77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r~~~  155 (178)
T 1ye8_A           77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGA  155 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-TTSEEEEECCSSCCSHHHHHHHTCTTC
T ss_pred             cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-CCCeEEEEEccCCCchHHHHHHhcCCc
Confidence            56788888888885     889999999999  65   45555666666644 455577777   466777766554  5


Q ss_pred             ceEEcCCCCC
Q 015891          196 NLHQLQPLSD  205 (398)
Q Consensus       196 ~~~~l~~L~~  205 (398)
                      .++++.+.+.
T Consensus       156 ~i~~~~~~~r  165 (178)
T 1ye8_A          156 VLIELTPENR  165 (178)
T ss_dssp             EEEECCTTTT
T ss_pred             EEEEecCcCH
Confidence            6888887776

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.64  E-value=4.3e-07  Score=82.22  Aligned_cols=180  Identities=11%  Similarity=0.140  Sum_probs=96.3

Q ss_pred             CCCCcccchhhHHHHHHHHhcc--C------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           36 PPANVHGFANEELHLQKLLSNR--G------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~--~------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      .-++++|.+..++.|.+++...  .      .....+.+.|+|++|+|||++|+.+++.  ....|   +.+. .+.-..
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~-~~~~~~   77 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMA-GAEFVE   77 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEE-TTTTSS
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEec-hHHHHh
Confidence            3467999999888887765420  0      1134566889999999999999999886  32222   2233 221100


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------------HHHHHHHhHc
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------------EVCKHLSKVL  170 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------------~~~~~l~~~l  170 (398)
                                          .............+.......+.+|+|||++..                 ..+..+...+
T Consensus        78 --------------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~  137 (262)
T 2qz4_A           78 --------------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM  137 (262)
T ss_dssp             --------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHH
T ss_pred             --------------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh
Confidence                                000111222333444444566899999999853                 1111222222


Q ss_pred             C---CCCCCEEEEEeCChHHHH-Hhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTT-EMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+..||.||....... .+.   .....+.+++.+. ++...++.+.+..........  .....+++.+.|.+
T Consensus       138 ~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~-~~r~~il~~~~~~~~~~~~~~--~~~~~l~~~~~g~~  214 (262)
T 2qz4_A          138 DGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL-QERREIFEQHLKSLKLTQSST--FYSQRLAELTPGFS  214 (262)
T ss_dssp             HTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCH-HHHHHHHHHHHHHTTCCBTHH--HHHHHHHHTCTTCC
T ss_pred             hCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCH-HHHHHHHHHHHHhCCCCcchh--hHHHHHHHHCCCCC
Confidence            1   123456677776543221 111   1246778877777 667777776543322222221  13456777777765


Q ss_pred             h
Q 015891          244 E  244 (398)
Q Consensus       244 l  244 (398)
                      -
T Consensus       215 ~  215 (262)
T 2qz4_A          215 G  215 (262)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.63  E-value=1.6e-07  Score=85.26  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+.+++++..+++.+..++-+++||++.   |....+.+...+. ...+..||++||+...+..   .++++.+
T Consensus       154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~---~d~i~~l  226 (260)
T 2ghi_A          154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS---AESIILL  226 (260)
T ss_dssp             BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT---CSEEEEE
T ss_pred             CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh---CCEEEEE
Confidence            458999999999999999999999999999   4444333333332 1236799999999876542   3445544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.62  E-value=1.2e-07  Score=94.86  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=81.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccc--eEEEEe-cCC--cccHHH---------------HHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVP--RIWVCT-MSG--QKTAES---------------IVKRILKRL  119 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~--~~~v~~-v~~--~~~~~~---------------~~~~il~~l  119 (398)
                      -.+++|+|++|+|||||++.++.-.... ..  +..  ..++.. ...  .....+               ...++++.+
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~  373 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL  373 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc
Confidence            4589999999999999999998652111 10  111  111110 000  111111               123334444


Q ss_pred             CCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhc
Q 015891          120 GVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       120 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ++... .......+++++++..++++|..++-+|+||++.   |......+...+.   ...|..||++||+...+..++
T Consensus       374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a  453 (538)
T 3ozx_A          374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA  453 (538)
T ss_dssp             TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred             CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            44332 2233448999999999999999999999999999   4433333333332   234788999999999888764


Q ss_pred             C
Q 015891          193 G  193 (398)
Q Consensus       193 ~  193 (398)
                      +
T Consensus       454 D  454 (538)
T 3ozx_A          454 D  454 (538)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.62  E-value=5.1e-07  Score=84.67  Aligned_cols=176  Identities=14%  Similarity=0.170  Sum_probs=100.8

Q ss_pred             CCCCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           36 PPANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      .-++++|.+..++.|.+++..        .......+.+.|+|++|+|||+||+++++.  ....|   +.+. .     
T Consensus        16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~-~-----   84 (322)
T 3eie_A           16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVS-S-----   84 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEE-H-----
T ss_pred             CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEc-h-----
Confidence            346799999999999988731        012233567999999999999999999886  32222   2222 1     


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---  171 (398)
                       ..+    ....          ...........+......++.+|+|||++..             .....+...+.   
T Consensus        85 -~~l----~~~~----------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~  149 (322)
T 3eie_A           85 -SDL----VSKW----------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG  149 (322)
T ss_dssp             -HHH----HTTT----------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred             -HHH----hhcc----------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence             111    1000          0011222233344444567889999999832             11222222221   


Q ss_pred             -CCCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          172 -RGYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                       ...+..||.||....     +...   ....+.+++.+. ++...++...+.........   .....|++.+.|..-
T Consensus       150 ~~~~~v~vi~atn~~~~ld~al~~R---f~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~---~~l~~la~~t~g~sg  221 (322)
T 3eie_A          150 NDSQGVLVLGATNIPWQLDSAIRRR---FERRIYIPLPDL-AARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGYSG  221 (322)
T ss_dssp             TSCCCEEEEEEESCGGGSCHHHHHH---CCEEEECCCCCH-HHHHHHHHHHHTTCCCCCCH---HHHHHHHHTTTTCCH
T ss_pred             ccCCceEEEEecCChhhCCHHHHcc---cCeEEEeCCCCH-HHHHHHHHHHhccCCCCCCH---HHHHHHHHHcCCCCH
Confidence             233556666776532     2232   245677766665 77888888766554332222   256778888887543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.62  E-value=3.4e-07  Score=92.76  Aligned_cols=84  Identities=11%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             HHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          110 SIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ....++++.+++.... ......+++++++..+++.|..++-+++||++.   |......+...+.  ...|..||++||
T Consensus       200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH  279 (608)
T 3j16_B          200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH  279 (608)
T ss_dssp             HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred             HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            3456778888876532 233458999999999999999999999999999   4443333333332  234778999999


Q ss_pred             ChHHHHHhcC
Q 015891          184 NEKLTTEMVG  193 (398)
Q Consensus       184 ~~~v~~~~~~  193 (398)
                      +...+..+++
T Consensus       280 dl~~~~~~~d  289 (608)
T 3j16_B          280 DLSVLDYLSD  289 (608)
T ss_dssp             CHHHHHHHCS
T ss_pred             CHHHHHHhCC
Confidence            9988877643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.60  E-value=1.7e-07  Score=86.87  Aligned_cols=69  Identities=10%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..|++.|..++-+||||++.   |......+...+. ...+.++|++||+...+..   .++++.+
T Consensus       189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~---aD~i~vl  261 (306)
T 3nh6_A          189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN---ADQILVI  261 (306)
T ss_dssp             BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT---CSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc---CCEEEEE
Confidence            347999999999999999999999999999   4433333333332 1235789999999887754   3455554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.60  E-value=2.7e-07  Score=92.31  Aligned_cols=83  Identities=8%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             HHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChH
Q 015891          112 VKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEK  186 (398)
Q Consensus       112 ~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~  186 (398)
                      ...++..+++..... .....+++++++..|+++|..++-+|+||++.   |......+...+. ...|..||++||+..
T Consensus       119 ~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~  198 (538)
T 3ozx_A          119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI  198 (538)
T ss_dssp             HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH
Confidence            456777887765332 23348999999999999999999999999999   4433333333322 112789999999998


Q ss_pred             HHHHhcCC
Q 015891          187 LTTEMVGE  194 (398)
Q Consensus       187 v~~~~~~~  194 (398)
                      .+..+++.
T Consensus       199 ~~~~~~d~  206 (538)
T 3ozx_A          199 VLDYLTDL  206 (538)
T ss_dssp             HHHHHCSE
T ss_pred             HHHhhCCE
Confidence            88776443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.60  E-value=1e-06  Score=83.07  Aligned_cols=188  Identities=14%  Similarity=0.121  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891           44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDD  123 (398)
Q Consensus        44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~  123 (398)
                      ++..+.+...+..   ..-...+.++|++|+|||++|+.+++.  +....... ... ......    ...+...-..+.
T Consensus         8 ~~~~~~l~~~i~~---~~~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~-~~~-c~~c~~----c~~~~~~~~~d~   76 (334)
T 1a5t_A            8 RPDFEKLVASYQA---GRGHHALLIQALPGMGDDALIYALSRY--LLCQQPQG-HKS-CGHCRG----CQLMQAGTHPDY   76 (334)
T ss_dssp             HHHHHHHHHHHHT---TCCCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBT-TBC-CSCSHH----HHHHHHTCCTTE
T ss_pred             HHHHHHHHHHHHc---CCcceeEEEECCCCchHHHHHHHHHHH--HhCCCCCC-CCC-CCCCHH----HHHHhcCCCCCE
Confidence            4556667776653   233567999999999999999999765  11110000 000 000000    000000000000


Q ss_pred             CCCCC---cCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHHHh
Q 015891          124 GTTNS---FEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTTEM  191 (398)
Q Consensus       124 ~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~~~  191 (398)
                      .....   ......+..+. +.+.+     .+++.++|+|+++  +.+..+.|...+.. ..++.+|++|.+. .+...+
T Consensus        77 ~~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti  155 (334)
T 1a5t_A           77 YTLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL  155 (334)
T ss_dssp             EEECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred             EEEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence            00000   00112222222 22222     2456899999999  44555666666643 3456777777665 344444


Q ss_pred             cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCC
Q 015891          192 VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSS  252 (398)
Q Consensus       192 ~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~  252 (398)
                      ......+++.+++. ++....+.+...     .++   +.+..+++.++|.|..+..++..
T Consensus       156 ~SRc~~~~~~~~~~-~~~~~~L~~~~~-----~~~---~~~~~l~~~s~G~~r~a~~~l~~  207 (334)
T 1a5t_A          156 RSRCRLHYLAPPPE-QYAVTWLSREVT-----MSQ---DALLAALRLSAGSPGAALALFQG  207 (334)
T ss_dssp             HTTSEEEECCCCCH-HHHHHHHHHHCC-----CCH---HHHHHHHHHTTTCHHHHHHTTSS
T ss_pred             hhcceeeeCCCCCH-HHHHHHHHHhcC-----CCH---HHHHHHHHHcCCCHHHHHHHhcc
Confidence            45667899999998 556666665441     111   25567889999999988776654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.4e-07  Score=93.86  Aligned_cols=136  Identities=18%  Similarity=0.126  Sum_probs=86.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCc-c-cc--ceEEEEe---------c--------CCcccHHHHHHHHHHHcCCC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKT-Q-FV--PRIWVCT---------M--------SGQKTAESIVKRILKRLGVD  122 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~-F~--~~~~v~~---------v--------~~~~~~~~~~~~il~~l~~~  122 (398)
                      .+++|+|++|+|||||++.++.-..-.. . ..  ...++..         +        ............+++.+++.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            5799999999999999999976421110 0 00  0111110         0        00011123345667777776


Q ss_pred             CCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCC
Q 015891          123 DGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEE  195 (398)
Q Consensus       123 ~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~  195 (398)
                      ... ......+++++++..++++|..++-+|+||++.   |......+...+.   ...|..||++||+.+.+..++  +
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a--D  536 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA--D  536 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC--S
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--C
Confidence            532 334458999999999999999999999999999   4433333333332   234789999999998887753  4


Q ss_pred             ceEEcC
Q 015891          196 NLHQLQ  201 (398)
Q Consensus       196 ~~~~l~  201 (398)
                      +++.+.
T Consensus       537 rvivl~  542 (608)
T 3j16_B          537 KVIVFE  542 (608)
T ss_dssp             EEEECE
T ss_pred             EEEEEe
Confidence            455443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.58  E-value=1.1e-06  Score=82.26  Aligned_cols=178  Identities=14%  Similarity=0.202  Sum_probs=101.2

Q ss_pred             CCCCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           36 PPANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      .-++++|.+..++.|.+.+..        .......+.+.|+|++|+|||+||+++++... ...|   +.+. .+.-..
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~-~~~l~~   84 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSIS-SSDLVS   84 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEE-CCSSCC
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEE-hHHHHh
Confidence            346799999999999887642        01123457899999999999999999998620 1121   2222 221100


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---  171 (398)
                                    .      ............+......++.+|+|||++..             .....+...+.   
T Consensus        85 --------------~------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~  144 (322)
T 1xwi_A           85 --------------K------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG  144 (322)
T ss_dssp             --------------S------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred             --------------h------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence                          0      00122223333444444567899999999843             11112222221   


Q ss_pred             -CCCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          172 -RGYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                       ...+..||.||....     +..   .....+.+++.+. ++...+++..+........+   .....|++.+.|.+-+
T Consensus       145 ~~~~~v~vI~atn~~~~ld~al~r---Rf~~~i~i~~P~~-~~r~~il~~~l~~~~~~l~~---~~l~~la~~t~G~sga  217 (322)
T 1xwi_A          145 VDNDGILVLGATNIPWVLDSAIRR---RFEKRIYIPLPEP-HARAAMFKLHLGTTQNSLTE---ADFRELGRKTDGYSGA  217 (322)
T ss_dssp             SCCTTEEEEEEESCTTTSCHHHHH---TCCEEEECCCCCH-HHHHHHHHHHHTTCCBCCCH---HHHHHHHHTCTTCCHH
T ss_pred             ccCCCEEEEEecCCcccCCHHHHh---hcCeEEEeCCcCH-HHHHHHHHHHHhcCCCCCCH---HHHHHHHHHcCCCCHH
Confidence             123445565665432     222   2345677866665 77788887766544332222   3567888889887543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.57  E-value=7.8e-07  Score=82.23  Aligned_cols=176  Identities=13%  Similarity=0.209  Sum_probs=98.8

Q ss_pred             CCCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           36 PPANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      .-++++|.+..++.|.+++...        ........+.|+|++|+||||+|+.+++.  ....|   +.+. .+.-..
T Consensus        19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~-~~~l~~   92 (297)
T 3b9p_A           19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNIS-AASLTS   92 (297)
T ss_dssp             CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEE-STTTSS
T ss_pred             CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEee-HHHHhh
Confidence            3467999999999999877430        01123568999999999999999999886  32222   2222 211100


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhH---cC
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKV---LP  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~---l~  171 (398)
                                    .      ............+......++.+|+|||++..             .....+...   ++
T Consensus        93 --------------~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~  152 (297)
T 3b9p_A           93 --------------K------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP  152 (297)
T ss_dssp             --------------S------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred             --------------c------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence                          0      00122233334444455567899999999732             111112111   22


Q ss_pred             C---CCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          172 R---GYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       172 ~---~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   +.+..||.||....     +...+   ...+.+.+.+. +....++...+.........   .....|++.+.|.+
T Consensus       153 ~~~~~~~v~vi~~tn~~~~l~~~l~~R~---~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~---~~~~~la~~~~g~~  225 (297)
T 3b9p_A          153 GNPDGDRIVVLAATNRPQELDEAALRRF---TKRVYVSLPDE-QTRELLLNRLLQKQGSPLDT---EALRRLAKITDGYS  225 (297)
T ss_dssp             ------CEEEEEEESCGGGBCHHHHHHC---CEEEECCCCCH-HHHHHHHHHHHGGGSCCSCH---HHHHHHHHHTTTCC
T ss_pred             ccCCCCcEEEEeecCChhhCCHHHHhhC---CeEEEeCCcCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCC
Confidence            1   13456677777542     33322   35667755554 66677776654332222222   35677888888888


Q ss_pred             h
Q 015891          244 E  244 (398)
Q Consensus       244 l  244 (398)
                      -
T Consensus       226 ~  226 (297)
T 3b9p_A          226 G  226 (297)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.56  E-value=2.2e-07  Score=98.17  Aligned_cols=125  Identities=20%  Similarity=0.264  Sum_probs=85.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCcccc-----ceEEEEecCCc-------ccH-----------HHHHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV-----PRIWVCTMSGQ-------KTA-----------ESIVKRILKRL  119 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~-----~~~~v~~v~~~-------~~~-----------~~~~~~il~~l  119 (398)
                      -.+++|+|++|+|||||++.+.... +. .++     ...+   +.+.       .+.           ......++..+
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG~-i~-g~~~~~~~~~~~---v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l  535 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANGQ-VD-GFPTQEECRTVY---VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF  535 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHTC-ST-TCCCTTTSCEEE---TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-cC-CCccccceeEEE---EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence            4579999999999999999998421 10 111     0111   2211       111           23456678888


Q ss_pred             CCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891          120 GVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG  193 (398)
Q Consensus       120 ~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~  193 (398)
                      ++..  ........+++++++..|.+.+..++-+|+||++.   |....+.+...+.. .|..||++||+...+..+++
T Consensus       536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~ad  613 (986)
T 2iw3_A          536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCE  613 (986)
T ss_dssp             TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCS
T ss_pred             CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCC
Confidence            8742  12333458999999999999999999999999999   44444455555543 58899999999988876543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.56  E-value=3.8e-07  Score=85.50  Aligned_cols=176  Identities=17%  Similarity=0.192  Sum_probs=99.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.+..++.+..++..   ......+.+.|++|+|||++|+.+++.  ...   ..+.+. .+. .. ...+...+.
T Consensus        26 ~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~-~~~-~~-~~~i~~~~~   94 (324)
T 3u61_B           26 DECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVN-GSD-CK-IDFVRGPLT   94 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEE-TTT-CC-HHHHHTHHH
T ss_pred             HHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEc-ccc-cC-HHHHHHHHH
Confidence            6799999999999999974   233467788899999999999999887  321   123333 222 11 111111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHHhc
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTEMV  192 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~~~  192 (398)
                      .+....                    .+.+++.+|++||++.   .+..+.|...+. ...++++|+||.... +...+.
T Consensus        95 ~~~~~~--------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~  154 (324)
T 3u61_B           95 NFASAA--------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ  154 (324)
T ss_dssp             HHHHBC--------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred             HHHhhc--------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence            110000                    0012578999999994   445555555543 234678888887643 111111


Q ss_pred             CCCceEEcCCCCChhHHHH-------HHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891          193 GEENLHQLQPLSDQESCWL-------IYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV  247 (398)
Q Consensus       193 ~~~~~~~l~~L~~~e~~~~-------l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~  247 (398)
                      .....+++++++. ++...       .+.+.+...+...++  .+....|++.++|.+..+.
T Consensus       155 sR~~~i~~~~~~~-~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~  213 (324)
T 3u61_B          155 SRCRVITFGQPTD-EDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI  213 (324)
T ss_dssp             HHSEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred             hhCcEEEeCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence            1235789999987 43221       122222211222211  1366677888888776643

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.56  E-value=8.3e-08  Score=96.04  Aligned_cols=192  Identities=16%  Similarity=0.186  Sum_probs=103.5

Q ss_pred             CCcccchhhHHHHHHHHhccC-------------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC
Q 015891           38 ANVHGFANEELHLQKLLSNRG-------------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG  104 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-------------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~  104 (398)
                      ++++|++..++.|..++....             .....+.+.|+|++|+||||+|+.+++.  ..  +. .+.+. .+.
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~~-~i~in-~s~  112 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--YD-ILEQN-ASD  112 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--CE-EEEEC-TTS
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEe-CCC
Confidence            679999999999999986410             0123578999999999999999999987  31  21 22333 333


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----HHHHHHHhHcCCCCCCEEE
Q 015891          105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----EVCKHLSKVLPRGYGERLI  179 (398)
Q Consensus       105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~gs~II  179 (398)
                      .... ..+...+........ .... .....   .  ......++.+|++||++..     ..+..+...+.. .+..||
T Consensus       113 ~~~~-~~~~~~i~~~~~~~~-~~~~-~~~~~---~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iI  183 (516)
T 1sxj_A          113 VRSK-TLLNAGVKNALDNMS-VVGY-FKHNE---E--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLI  183 (516)
T ss_dssp             CCCH-HHHHHTGGGGTTBCC-STTT-TTC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEE
T ss_pred             cchH-HHHHHHHHHHhcccc-HHHH-Hhhhh---h--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEE
Confidence            3222 222222222111100 0000 00000   0  0011246789999999832     222334333332 234466


Q ss_pred             EEeCChH--HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          180 ITSRNEK--LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       180 iTTR~~~--v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      +++.+..  ....+......+.+.+++. ++...++.+.+.......++   +....|++.++|.+..+..
T Consensus       184 li~~~~~~~~l~~l~~r~~~i~f~~~~~-~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~  250 (516)
T 1sxj_A          184 LICNERNLPKMRPFDRVCLDIQFRRPDA-NSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVIN  250 (516)
T ss_dssp             EEESCTTSSTTGGGTTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHH
T ss_pred             EEEcCCCCccchhhHhceEEEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence            6655432  1122334456789999988 55666665533221222222   2567788889997665443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.56  E-value=3.8e-08  Score=83.57  Aligned_cols=129  Identities=13%  Similarity=0.121  Sum_probs=71.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccceEEEEecCCcccHH---HHHHHH---HHHcCCCCCCCCCcCCCc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVPRIWVCTMSGQKTAE---SIVKRI---LKRLGVDDGTTNSFEGQG  133 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~v~~v~~~~~~~---~~~~~i---l~~l~~~~~~~~~~~~~~  133 (398)
                      ...+++|+|++|+|||||++.++....+..  .+...++-. ........   ..+...   ....+...........+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~   86 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDD-ENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQES   86 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSS-TTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCc-ccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHH
Confidence            457899999999999999997543210000  000000000 00001011   111111   112222211111112366


Q ss_pred             hHHHHHHHHHHHhCCCcEEEecCCCCH---H----------------HHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891          134 LAFLDYVLQQQLIGKRYLIVLDDFEDM---E----------------VCKHLSKVLP--RGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       134 ~~~~~~~l~~~l~~k~~LlVLDdv~~~---~----------------~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~  191 (398)
                      +++++..+++.+..++.+++||++.+.   .                ....+...+.  ...|..+|++||+.+.+..+
T Consensus        87 g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A           87 ARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             HHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence            778888999999999999999999843   2                3345555554  23488899999998877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.56  E-value=1.6e-07  Score=95.38  Aligned_cols=131  Identities=14%  Similarity=0.182  Sum_probs=84.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC--CCc----------cccc----------------eEEEE-ecCCc-----cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD--VKT----------QFVP----------------RIWVC-TMSGQ-----KT  107 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~----------~F~~----------------~~~v~-~v~~~-----~~  107 (398)
                      .-.+++|+|++|+|||||++.+..-..  ...          .|..                ..++. ++...     .+
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t  195 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK  195 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence            456899999999999999999976411  000          0110                01110 00000     01


Q ss_pred             HH---------HHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891          108 AE---------SIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R  172 (398)
Q Consensus       108 ~~---------~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~  172 (398)
                      ..         ....+++..+++..... .....+++++++..|++.|..++-+|+||++.   |......+...+.  .
T Consensus       196 v~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~  275 (607)
T 3bk7_A          196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA  275 (607)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            11         12456788888765322 23348999999999999999999999999999   4433333333322  1


Q ss_pred             CCCCEEEEEeCChHHHHHhc
Q 015891          173 GYGERLIITSRNEKLTTEMV  192 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~  192 (398)
                      ..|..||++||+...+..++
T Consensus       276 ~~g~tvIivsHdl~~~~~~a  295 (607)
T 3bk7_A          276 NEGKAVLVVEHDLAVLDYLS  295 (607)
T ss_dssp             HTTCEEEEECSCHHHHHHHC
T ss_pred             hcCCEEEEEecChHHHHhhC
Confidence            24789999999998887654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.55  E-value=1.6e-07  Score=90.06  Aligned_cols=125  Identities=13%  Similarity=0.121  Sum_probs=79.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------ecCCc----------------cc
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------TMSGQ----------------KT  107 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~v~~~----------------~~  107 (398)
                      ..-.+++|+|++|+|||||++.++.-.  .  ..+.+++.                 ++.+.                ..
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~--~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~  120 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLL--N--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH  120 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCS--E--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC--C--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcccc
Confidence            345689999999999999999997631  1  11111111                 01111                01


Q ss_pred             HHHHHHHHHHHcCCCCC-CCCCc-----------CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891          108 AESIVKRILKRLGVDDG-TTNSF-----------EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~-~~~~~-----------~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-  171 (398)
                      ......++++.+++... ...+.           ..+++++++..+++.|..++-+|+||++.   |......+...+. 
T Consensus       121 ~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            12334566666665431 11111           27999999999999999999999999998   4444444444443 


Q ss_pred             CCCCCEEEEEeCChHHHH
Q 015891          172 RGYGERLIITSRNEKLTT  189 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v~~  189 (398)
                      ...+..+|++||+.....
T Consensus       201 ~~~~~tvi~vtHd~e~~~  218 (390)
T 3gd7_A          201 AFADCTVILCEARIEAML  218 (390)
T ss_dssp             TTTTSCEEEECSSSGGGT
T ss_pred             HhCCCEEEEEEcCHHHHH
Confidence            234788999999976443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.55  E-value=7e-07  Score=84.36  Aligned_cols=174  Identities=15%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccc-eEEEEecCCcccHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVP-RIWVCTMSGQKTAESIVKRI  115 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~-~~~v~~v~~~~~~~~~~~~i  115 (398)
                      ..++|.+..++.|...+..    ++...+.++|++|+||||+|+.+++.  +.. .+.. ...+. .+.....       
T Consensus        25 ~~~~g~~~~~~~L~~~i~~----g~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~-~~~~~~~-------   90 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELN-ASDDRGI-------   90 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEEC-TTSCCSH-------
T ss_pred             HHhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEc-CcccccH-------
Confidence            4578999999999988865    23333899999999999999999876  211 1111 11122 2211111       


Q ss_pred             HHHcCCCCCCCCCcCCCchHHHHHHHHHHH------hCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCChH
Q 015891          116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL------IGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNEK  186 (398)
Q Consensus       116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~~  186 (398)
                                         ...+..+....      ...+.++|+|+++  ..+..+.|...+. ....+++|++|....
T Consensus        91 -------------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~  151 (340)
T 1sxj_C           91 -------------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH  151 (340)
T ss_dssp             -------------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             -------------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence                               11111122111      1236799999998  3444455555553 234566777765432


Q ss_pred             -HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          187 -LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       187 -v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                       +...+......+.+.+++. ++....+.+.+.......++   +..+.|++.++|.+..+..
T Consensus       152 ~i~~~i~sR~~~~~~~~l~~-~~~~~~l~~~~~~~~~~i~~---~~~~~i~~~s~G~~r~~~~  210 (340)
T 1sxj_C          152 KLTPALLSQCTRFRFQPLPQ-EAIERRIANVLVHEKLKLSP---NAEKALIELSNGDMRRVLN  210 (340)
T ss_dssp             GSCHHHHTTSEEEECCCCCH-HHHHHHHHHHHHTTTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred             ccchhHHhhceeEeccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence             2222334455789999998 55666666544332322333   2556778888888875543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.55  E-value=1.4e-06  Score=80.92  Aligned_cols=179  Identities=13%  Similarity=0.198  Sum_probs=101.6

Q ss_pred             CCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           36 PPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      .-++++|.+..++.|.+++...         ..-...+.+.|+|++|+|||+||+++++.  ....     ++. +.   
T Consensus        13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~-v~---   81 (301)
T 3cf0_A           13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FIS-IK---   81 (301)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEE-EC---
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEE-EE---
Confidence            3467999999999998877530         01234568999999999999999999987  3222     222 22   


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHH----------------HHHHHHhHc
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDME----------------VCKHLSKVL  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~----------------~~~~l~~~l  170 (398)
                       ...+...+   ++..           .......+.......+.+|+|||++...                ....+...+
T Consensus        82 -~~~l~~~~---~g~~-----------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l  146 (301)
T 3cf0_A           82 -GPELLTMW---FGES-----------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM  146 (301)
T ss_dssp             -HHHHHHHH---HTTC-----------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred             -hHHHHhhh---cCch-----------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence             12222222   1211           1122344555555678999999998431                112222222


Q ss_pred             C---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+..||.||...+.... +.   .....+.+++.+. ++...+++..+.......+.    ....+++.+.|.|
T Consensus       147 ~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~-~~r~~il~~~l~~~~~~~~~----~~~~la~~~~g~s  221 (301)
T 3cf0_A          147 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE-KSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFS  221 (301)
T ss_dssp             HSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBCSSC----CHHHHHHTCSSCC
T ss_pred             hcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH-HHHHHHHHHHHccCCCCccc----hHHHHHHHcCCCC
Confidence            1   2335677778776543221 11   2245788877776 66777777765443221111    2345566677666


Q ss_pred             hh
Q 015891          244 ED  245 (398)
Q Consensus       244 la  245 (398)
                      -+
T Consensus       222 g~  223 (301)
T 3cf0_A          222 GA  223 (301)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.53  E-value=1e-06  Score=84.78  Aligned_cols=178  Identities=13%  Similarity=0.183  Sum_probs=96.7

Q ss_pred             CCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           37 PANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      -++++|.+..++.|.+++...        ......+.+.|+|++|+|||+||+.+++.  ....|   +.+. .+.-.. 
T Consensus       114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~-~~~l~~-  186 (389)
T 3vfd_A          114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNIS-AASLTS-  186 (389)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEEC-SCCC---
T ss_pred             hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEee-HHHhhc-
Confidence            467999999999999887320        01123568999999999999999999886  32222   2222 211110 


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---C
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---R  172 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---~  172 (398)
                       ..       .           ..........+.......+.+|+|||++..             .....+...+.   .
T Consensus       187 -~~-------~-----------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~  247 (389)
T 3vfd_A          187 -KY-------V-----------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS  247 (389)
T ss_dssp             ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred             -cc-------c-----------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence             00       0           011122233333344556789999999732             11111111111   1


Q ss_pred             --CCCCEEEEEeCChH-HHHHhc-CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          173 --GYGERLIITSRNEK-LTTEMV-GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       173 --~~gs~IIiTTR~~~-v~~~~~-~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                        .....||.||.... +-..+. .....+.+.+.+. ++...++...+.........   +....|++.+.|..-
T Consensus       248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~-~~r~~il~~~~~~~~~~l~~---~~~~~la~~~~g~~~  319 (389)
T 3vfd_A          248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE-ETRLLLLKNLLCKQGSPLTQ---KELAQLARMTDGYSG  319 (389)
T ss_dssp             ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH-HHHHHHHHHHHTTSCCCSCH---HHHHHHHHHTTTCCH
T ss_pred             cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCCH
Confidence              22345566665432 111111 2234677877666 66777777765443333222   256778888888665

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.53  E-value=1.1e-06  Score=83.66  Aligned_cols=179  Identities=14%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             CCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           37 PANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      -++++|.+..++.|.+.+...        ......+.+.|+|++|+|||+||+++++.  ....|   +.+. .      
T Consensus        50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~-~------  117 (355)
T 2qp9_X           50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVS-S------  117 (355)
T ss_dssp             GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEE-H------
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEee-H------
Confidence            367999999999999877320        11223456899999999999999999987  32222   1222 1      


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC----
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP----  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~----  171 (398)
                      ..+    ....          ...........+......++.+|+|||++..             .....+...+.    
T Consensus       118 ~~l----~~~~----------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~  183 (355)
T 2qp9_X          118 SDL----VSKW----------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN  183 (355)
T ss_dssp             HHH----HSCC-------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred             HHH----hhhh----------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence            111    1100          0011222333344444567899999999842             11222222221    


Q ss_pred             CCCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch-h
Q 015891          172 RGYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE-D  245 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-a  245 (398)
                      ...+..||.||....     +..   .....+.+.+.+. ++...++...+........   ......|++.+.|..- .
T Consensus       184 ~~~~v~vI~atn~~~~ld~al~r---Rf~~~i~i~~P~~-~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~d  256 (355)
T 2qp9_X          184 DSQGVLVLGATNIPWQLDSAIRR---RFERRIYIPLPDL-AARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSD  256 (355)
T ss_dssp             --CCEEEEEEESCGGGSCHHHHH---TCCEEEECCCCCH-HHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHH
T ss_pred             cCCCeEEEeecCCcccCCHHHHc---ccCEEEEeCCcCH-HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHH
Confidence            123455666776442     222   2346777876666 6677888776654332222   2256778888888543 4


Q ss_pred             hhc
Q 015891          246 AVN  248 (398)
Q Consensus       246 i~~  248 (398)
                      |..
T Consensus       257 l~~  259 (355)
T 2qp9_X          257 IAV  259 (355)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.49  E-value=6.5e-07  Score=76.37  Aligned_cols=118  Identities=16%  Similarity=0.192  Sum_probs=63.7

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcccc-ceEEEEecCCcccHHHHHHHHHHHcCC
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV-PRIWVCTMSGQKTAESIVKRILKRLGV  121 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~~v~~v~~~~~~~~~~~~il~~l~~  121 (398)
                      ....++.+.+++... .......++|+|++|+|||||++.+++.  ...... .+.++.       ...+...+...+..
T Consensus        19 ~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~--~~~~~g~~~~~~~-------~~~~~~~~~~~~~~   88 (180)
T 3ec2_A           19 QNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKA--IYEKKGIRGYFFD-------TKDLIFRLKHLMDE   88 (180)
T ss_dssp             HHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHH--HHHHSCCCCCEEE-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHH--HHHHcCCeEEEEE-------HHHHHHHHHHHhcC
Confidence            444555555555431 2234578999999999999999999876  221111 123333       23333333332211


Q ss_pred             CCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          122 DDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ..        .  ..    +...+ .++.+|||||++.    ....+.+...+.  ...+..+|+||+..
T Consensus        89 ~~--------~--~~----~~~~~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           89 GK--------D--TK----FLKTV-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             TC--------C--SH----HHHHH-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             ch--------H--HH----HHHHh-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            10        0  01    11112 2578999999982    233334433332  23578899999754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.49  E-value=7.3e-07  Score=84.88  Aligned_cols=178  Identities=10%  Similarity=0.131  Sum_probs=97.0

Q ss_pred             CCCcccchhhHHHHHHHHhcc---C-----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           37 PANVHGFANEELHLQKLLSNR---G-----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~---~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      -++++|.+..++.|.+.+...   .     .....+.+.|+|++|+|||+||+.+++.  ....|   +.+. .+.-.. 
T Consensus        83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~i~-~~~l~~-  155 (357)
T 3d8b_A           83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGATF---FSIS-ASSLTS-  155 (357)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCEE---EEEE-GGGGCC-
T ss_pred             HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCeE---EEEe-hHHhhc-
Confidence            367999999999999887420   0     1134668999999999999999999886  32222   2333 221100 


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC----
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP----  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~----  171 (398)
                                   .      ............+......++.+|+|||++..             .....+...+.    
T Consensus       156 -------------~------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~  216 (357)
T 3d8b_A          156 -------------K------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT  216 (357)
T ss_dssp             -------------S------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred             -------------c------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence                         0      00011122223333333467899999999532             11122222221    


Q ss_pred             -CCCCCEEEEEeCChH-HHHHh-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          172 -RGYGERLIITSRNEK-LTTEM-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~-v~~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                       ...+..||.||.... +...+ ......+.+...+. ++...++...+........   .+....|++.+.|..-
T Consensus       217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~-~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~  288 (357)
T 3d8b_A          217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA-SARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSG  288 (357)
T ss_dssp             -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH-HHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCH
T ss_pred             cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH-HHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCH
Confidence             122445666675432 11111 12244677766665 6677777665433222222   2366778888888543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.45  E-value=9.4e-07  Score=89.68  Aligned_cols=69  Identities=10%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++.+..++-+++|||+.   |....+.+...+. ...|.++|++||+.+....   .++++.+
T Consensus       479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~---~d~i~~l  551 (582)
T 3b5x_A          479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ---ADEILVV  551 (582)
T ss_pred             CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh---CCEEEEE
Confidence            348999999999999999999999999999   4444444444443 2247889999999877654   3445544

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.44  E-value=3.1e-06  Score=82.92  Aligned_cols=180  Identities=15%  Similarity=0.207  Sum_probs=99.6

Q ss_pred             CCCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           36 PPANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      .-++++|.+..++.|.+.+...        ......+.+.|+|++|+|||+||+++++.  ..    ...++. ++... 
T Consensus       132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~-v~~~~-  203 (444)
T 2zan_A          132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFS-ISSSD-  203 (444)
T ss_dssp             CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEE-ECCC--
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEE-EeHHH-
Confidence            3467999999999999877320        01234578999999999999999999987  31    112222 22211 


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcCC--
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLPR--  172 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~--  172 (398)
                         +....   .+..        ...   ....+......++.+|+|||++..             .....+...+..  
T Consensus       204 ---l~~~~---~g~~--------~~~---~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~  266 (444)
T 2zan_A          204 ---LVSKW---LGES--------EKL---VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG  266 (444)
T ss_dssp             --------------C--------CCT---HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred             ---HHhhh---cchH--------HHH---HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence               00000   1110        011   223333344567899999999843             222223323321  


Q ss_pred             --CCCCEEEEEeCChHHH-HHh-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          173 --GYGERLIITSRNEKLT-TEM-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       173 --~~gs~IIiTTR~~~v~-~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                        ..+..||.||...... ..+ ......+.+.+.+. ++...++...+........+   .....|++.+.|.+-
T Consensus       267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~-~~r~~il~~~l~~~~~~l~~---~~l~~la~~t~G~sg  338 (444)
T 2zan_A          267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEA-HARAAMFRLHLGSTQNSLTE---ADFQELGRKTDGYSG  338 (444)
T ss_dssp             CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCH-HHHHHHHHHHHTTSCEECCH---HHHHHHHHHTTTCCH
T ss_pred             cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCH-HHHHHHHHHHHhcCCCCCCH---HHHHHHHHHcCCCCH
Confidence              2355677677654221 111 12245677755554 77778887766543322222   356778888888654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.43  E-value=5.1e-07  Score=74.27  Aligned_cols=46  Identities=15%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +++|++..+.++.+.+...  ......|.|+|++|+|||++|+.+++.
T Consensus         2 ~iiG~s~~~~~~~~~~~~~--a~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL--SETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH--TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CceeCCHHHHHHHHHHHHH--hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999988652  233455889999999999999999886

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.42  E-value=7.9e-07  Score=86.02  Aligned_cols=179  Identities=17%  Similarity=0.228  Sum_probs=102.2

Q ss_pred             CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      -+++.|.++.++.|.+.+...         .+-...+-+.++||+|+|||+||+++++.  ....|   +.+. .+.-.+
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~-~~~l~~  244 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVN-GSEFVH  244 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEE-GGGTCC
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEe-cchhhc
Confidence            367899999999888866430         13345678999999999999999999987  33332   2222 221100


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------H---HHHHHHhH--
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------E---VCKHLSKV--  169 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~--  169 (398)
                                          ..-......++..+..+-...++++++|+++..             .   ....|...  
T Consensus       245 --------------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld  304 (428)
T 4b4t_K          245 --------------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD  304 (428)
T ss_dssp             --------------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred             --------------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence                                000122233344455555678999999999721             1   11122212  


Q ss_pred             -cCCCCCCEEEEEeCChHHHHH-h-c--CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          170 -LPRGYGERLIITSRNEKLTTE-M-V--GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       170 -l~~~~gs~IIiTTR~~~v~~~-~-~--~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                       +....+..||.||...+.... + .  ..+..+++..++..++...+|+..........+-    ....|++.+.|..-
T Consensus       305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~----dl~~lA~~t~G~sg  380 (428)
T 4b4t_K          305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA----DLDSLIIRNDSLSG  380 (428)
T ss_dssp             HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC----CHHHHHHHTTTCCH
T ss_pred             CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHHCCCCCH
Confidence             223345567777765432111 1 1  1245677866877676677776654332211111    35677888888764


Q ss_pred             h
Q 015891          245 D  245 (398)
Q Consensus       245 a  245 (398)
                      |
T Consensus       381 a  381 (428)
T 4b4t_K          381 A  381 (428)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.42  E-value=8.6e-07  Score=84.71  Aligned_cols=177  Identities=18%  Similarity=0.220  Sum_probs=102.1

Q ss_pred             CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      +++.|.++.+++|.+.+..         ..+-..++-|.++||+|+|||.||+++++.  ....|   +.+. .+.-.+ 
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~-~s~l~s-  220 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVS-GAELVQ-  220 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEE-GGGGSC-
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEE-hHHhhc-
Confidence            6788999999998876543         012345678999999999999999999987  33333   2222 211100 


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHc--
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVL--  170 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l--  170 (398)
                                         ..-......++..+..+-...+++|++|+++..             ..   ...+...+  
T Consensus       221 -------------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg  281 (405)
T 4b4t_J          221 -------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG  281 (405)
T ss_dssp             -------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred             -------------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence                               000122233344455555678999999999832             11   11222222  


Q ss_pred             -CCCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          171 -PRGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       171 -~~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                       ....+..||.||...+.... +   ...+..++++..+. ++...+|+..........+-    ....|++.+.|..-|
T Consensus       282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~-~~R~~Il~~~~~~~~l~~dv----dl~~lA~~t~G~SGA  356 (405)
T 4b4t_J          282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV-AARAEILRIHSRKMNLTRGI----NLRKVAEKMNGCSGA  356 (405)
T ss_dssp             TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCH-HHHHHHHHHHHTTSBCCSSC----CHHHHHHHCCSCCHH
T ss_pred             cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCH-HHHHHHHHHHhcCCCCCccC----CHHHHHHHCCCCCHH
Confidence             22334566777765432211 1   13377888865554 77788887655443221111    356778888887643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.41  E-value=1.6e-07  Score=80.08  Aligned_cols=46  Identities=26%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++||+.+++.+.+.+..    .....+.|+|++|+|||+||+.+++.
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cchhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999854    44567799999999999999999775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.36  E-value=1.2e-06  Score=92.67  Aligned_cols=87  Identities=23%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             HHHHHHHHcCCCCC---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCC
Q 015891          111 IVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRN  184 (398)
Q Consensus       111 ~~~~il~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~  184 (398)
                      ...+++..+++...   .......+++++++..|.+.+..++-+||||++.   |......+...+..- +..||++||+
T Consensus       879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD  957 (986)
T 2iw3_A          879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHS  957 (986)
T ss_dssp             HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSC
T ss_pred             HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECC
Confidence            35667788887632   2233458999999999999999999999999999   555555565555422 4689999999


Q ss_pred             hHHHHHhcCCCceEEc
Q 015891          185 EKLTTEMVGEENLHQL  200 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l  200 (398)
                      .+.+..++  ++++.+
T Consensus       958 ~e~v~~l~--DrVivL  971 (986)
T 2iw3_A          958 AEFTKNLT--EEVWAV  971 (986)
T ss_dssp             HHHHTTTC--CEEECC
T ss_pred             HHHHHHhC--CEEEEE
Confidence            98876643  445544

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.6e-06  Score=84.08  Aligned_cols=178  Identities=14%  Similarity=0.217  Sum_probs=101.9

Q ss_pred             CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      -+++.|.++.++.|.+.+...         .+-..++-|.++||+|+|||+||+++++.  ....|   +.+. .+.-.+
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~-~s~l~s  253 (437)
T 4b4t_L          180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSP-ASGIVD  253 (437)
T ss_dssp             SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEE-GGGTCC
T ss_pred             hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-hhhhcc
Confidence            367889999999888866430         12345788999999999999999999987  33332   2222 221100


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHc-
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVL-  170 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l-  170 (398)
                                          ..........+..+..+-...+++|++|+++..             ..   +..+...+ 
T Consensus       254 --------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD  313 (437)
T 4b4t_L          254 --------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD  313 (437)
T ss_dssp             --------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred             --------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence                                000122233344455555678999999999821             11   11222222 


Q ss_pred             --CCCCCCEEEEEeCChHHHHHh-c--C-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          171 --PRGYGERLIITSRNEKLTTEM-V--G-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       171 --~~~~gs~IIiTTR~~~v~~~~-~--~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                        ....+..||.||...+..... .  + .+..++++ ++..++...+|+..+.......+-    ....|++.+.|..-
T Consensus       314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~-lPd~~~R~~Il~~~~~~~~~~~d~----dl~~lA~~t~G~sG  388 (437)
T 4b4t_L          314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP-LPNEAGRLEIFKIHTAKVKKTGEF----DFEAAVKMSDGFNG  388 (437)
T ss_dssp             SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC-CCCHHHHHHHHHHHHHTSCBCSCC----CHHHHHHTCCSCCH
T ss_pred             cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecC-CcCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhCCCCCH
Confidence              223456788888765433221 1  1 24567775 455477777777655432211111    34667788888764


Q ss_pred             h
Q 015891          245 D  245 (398)
Q Consensus       245 a  245 (398)
                      |
T Consensus       389 A  389 (437)
T 4b4t_L          389 A  389 (437)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.33  E-value=1.7e-06  Score=85.37  Aligned_cols=148  Identities=15%  Similarity=0.130  Sum_probs=79.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-----ccceEEEEecCCcccHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-----FVPRIWVCTMSGQKTAESIV  112 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~~v~~v~~~~~~~~~~  112 (398)
                      +++|||+.+++.+...|..    ....-+.|+|++|+|||++|+.+++.  +...     +...-++. +...       
T Consensus       180 d~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~-l~~~-------  245 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMT-LDMG-------  245 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEEC-C----------
T ss_pred             CCccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-eeCC-------
Confidence            5699999999999999965    33445789999999999999999876  2111     11111222 1111       


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHH----
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLT----  188 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~----  188 (398)
                         ....|           .........+...-..++.+|++|  ...+....|...+. ....++|.+|......    
T Consensus       246 ---~~~~g-----------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~-~g~v~vI~at~~~e~~~~~~  308 (468)
T 3pxg_A          246 ---TKYRG-----------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA-RGELQCIGATTLDEYRKYIE  308 (468)
T ss_dssp             ---------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT-SSSCEEEEECCTTTTHHHHT
T ss_pred             ---ccccc-----------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc-CCCEEEEecCCHHHHHHHhh
Confidence               00000           000112233333444678899999  33333333443333 2245666666544311    


Q ss_pred             --HHhcCCCceEEcCCCCChhHHHHHHHhhh
Q 015891          189 --TEMVGEENLHQLQPLSDQESCWLIYRDSV  217 (398)
Q Consensus       189 --~~~~~~~~~~~l~~L~~~e~~~~l~~~~~  217 (398)
                        ..+......+.+++.+. ++...++....
T Consensus       309 ~~~al~~Rf~~i~v~~p~~-e~~~~iL~~~~  338 (468)
T 3pxg_A          309 KDAALERRFQPIQVDQPSV-DESIQILQGLR  338 (468)
T ss_dssp             TCSHHHHSEEEEECCCCCH-HHHHHHHHHTT
T ss_pred             cCHHHHHhCccceeCCCCH-HHHHHHHHHHH
Confidence              11112234688988887 66777777644

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.33  E-value=2e-06  Score=87.24  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++.+..++-+++|||+.   |......+...+. ...+.++|++||+.+.+..   .++++.+
T Consensus       478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~---~d~i~vl  550 (587)
T 3qf4_A          478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL---ADKILVL  550 (587)
T ss_dssp             CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTT---SSEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHh---CCEEEEE
Confidence            458999999999999999999999999999   4444444443332 2347899999999877653   3555555

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=2.3e-06  Score=82.97  Aligned_cols=176  Identities=15%  Similarity=0.151  Sum_probs=100.4

Q ss_pred             CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      +++.|.++.++.|.+.+..         .-+-...+-|.++||+|+|||+||+++++.  ....|   +.+. .+.-.+ 
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs-~s~L~s-  281 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVI-GSELVQ-  281 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEE-GGGGCC-
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEE-hHHhhc-
Confidence            6789999999999876432         113346788999999999999999999987  33333   2222 111000 


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------H---HHHHHHhHcC-
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------E---VCKHLSKVLP-  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~-  171 (398)
                                   .      .-......++..+..+-...+++|++|+++..             .   ....+...+. 
T Consensus       282 -------------k------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg  342 (467)
T 4b4t_H          282 -------------K------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG  342 (467)
T ss_dssp             -------------C------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred             -------------c------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence                         0      00122233344455555678999999999822             1   1111111221 


Q ss_pred             --CCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          172 --RGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                        ...+..||.||...+.+.. +   ...+..++++..+. ++...+|+..+.......+-    ....|++.+.|..-
T Consensus       343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~-~~R~~Ilk~~l~~~~l~~dv----dl~~LA~~T~GfSG  416 (467)
T 4b4t_H          343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL-EGRANIFRIHSKSMSVERGI----RWELISRLCPNSTG  416 (467)
T ss_dssp             SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCH-HHHHHHHHHHHTTSCBCSSC----CHHHHHHHCCSCCH
T ss_pred             cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCH-HHHHHHHHHHhcCCCCCCCC----CHHHHHHHCCCCCH
Confidence              2234456777764432211 1   12367788855444 77788887665443222111    34667788888754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.32  E-value=4.4e-06  Score=75.48  Aligned_cols=183  Identities=16%  Similarity=0.159  Sum_probs=94.4

Q ss_pred             CCCCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           35 KPPANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..-++++|.+..++.+.+++..-        ......+-+.|+|++|+||||||+.+++.  ....|   +.+. .+.-.
T Consensus         9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~-~~~~~   82 (257)
T 1lv7_A            9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTIS-GSDFV   82 (257)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEEC-SCSST
T ss_pred             CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEe-HHHHH
Confidence            34467999998888877654320        00122446899999999999999999876  22222   2222 11100


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------------HHHHHHHhHc
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------------EVCKHLSKVL  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l  170 (398)
                      .                .    ............+.......+.++++||++..                .....+...+
T Consensus        83 ~----------------~----~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l  142 (257)
T 1lv7_A           83 E----------------M----FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM  142 (257)
T ss_dssp             T----------------S----CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHH
T ss_pred             H----------------H----hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHh
Confidence            0                0    00112223334444444556789999998521                1122222222


Q ss_pred             C---CCCCCEEEEEeCChHHH-HHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCC-C
Q 015891          171 P---RGYGERLIITSRNEKLT-TEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQG-Q  242 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-l  242 (398)
                      .   ...+..||.||...+.. ..+.   .....+.+++.+. ++...++..........  +..  ....++..+.| .
T Consensus       143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~-~~r~~il~~~~~~~~l~--~~~--~~~~la~~~~G~~  217 (257)
T 1lv7_A          143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV-RGREQILKVHMRRVPLA--PDI--DAAIIARGTPGFS  217 (257)
T ss_dssp             HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBC--TTC--CHHHHHHTCTTCC
T ss_pred             hCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCH-HHHHHHHHHHHhcCCCC--ccc--cHHHHHHHcCCCC
Confidence            1   23345677777655322 1111   1245677766555 55666666654332211  111  23446666777 5


Q ss_pred             chhhhc
Q 015891          243 NEDAVN  248 (398)
Q Consensus       243 Plai~~  248 (398)
                      +-.|..
T Consensus       218 ~~dl~~  223 (257)
T 1lv7_A          218 GADLAN  223 (257)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.30  E-value=2e-06  Score=88.79  Aligned_cols=83  Identities=22%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             HHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCc--EEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          115 ILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRY--LIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       115 il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~--LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ++..+++...  .......+++++++..|+++|..++-  +|+||++.   |......+...+.  ...|.+||++||+.
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3666776542  23344589999999999999999877  99999998   3322222222221  23478999999999


Q ss_pred             HHHHHhcCCCceEEc
Q 015891          186 KLTTEMVGEENLHQL  200 (398)
Q Consensus       186 ~v~~~~~~~~~~~~l  200 (398)
                      +++..   .++++.+
T Consensus       265 ~~~~~---~d~ii~l  276 (670)
T 3ux8_A          265 DTMLA---ADYLIDI  276 (670)
T ss_dssp             HHHHH---CSEEEEE
T ss_pred             HHHhh---CCEEEEe
Confidence            87654   3455555

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.29  E-value=2.6e-06  Score=86.37  Aligned_cols=69  Identities=10%  Similarity=0.136  Sum_probs=50.2

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++.+..++-+++|||+.   |....+.+...+. ...|.++|++||+.+....   .++++.+
T Consensus       479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~---~d~i~~l  551 (582)
T 3b60_A          479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ---ADEIVVV  551 (582)
T ss_dssp             CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTT---CSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh---CCEEEEE
Confidence            358999999999999999999999999999   4444444443332 1237889999999875543   3555555

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.2e-06  Score=84.79  Aligned_cols=177  Identities=14%  Similarity=0.138  Sum_probs=98.2

Q ss_pred             CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      +++.|-++.++.|.+.+..         ..+-..++-|.++||+|+|||+||+++++.  ....|   +.+. .+.-.+ 
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~-~s~l~~-  253 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLA-APQLVQ-  253 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEE-GGGGCS-
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEe-hhhhhh-
Confidence            6789999999998876432         012345788999999999999999999987  33332   2222 211000 


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHcC-
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVLP-  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~-  171 (398)
                                   .      .-......++..+..+-...+++|++|+++..             ..   ...+...+. 
T Consensus       254 -------------~------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg  314 (434)
T 4b4t_M          254 -------------M------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG  314 (434)
T ss_dssp             -------------S------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred             -------------c------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence                         0      00112222333444444567999999999722             11   112222222 


Q ss_pred             --CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          172 --RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                        ...+..||.||...+.... +.   ..+..++++..+. ++...+|+..+.......+-    ....|++.+.|..-|
T Consensus       315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~-~~R~~Il~~~~~~~~~~~dv----dl~~lA~~t~G~sGA  389 (434)
T 4b4t_M          315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE-DSRAQILQIHSRKMTTDDDI----NWQELARSTDEFNGA  389 (434)
T ss_dssp             SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCH-HHHHHHHHHHHHHSCBCSCC----CHHHHHHHCSSCCHH
T ss_pred             cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCH-HHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCCCHH
Confidence              2234466667766543322 11   1255778855444 77777776544322111111    346678888887643

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.27  E-value=1.4e-06  Score=71.42  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=35.0

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.++|++..++++.+.+...  ......|.|+|++|+|||++|+.+++.
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~--~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAA--AKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHH--HTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             cCceeCCHHHHHHHHHHHHH--hCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            35799999999988887652  123345889999999999999999886

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.27  E-value=1.3e-06  Score=75.97  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             CCcccch----hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE
Q 015891           38 ANVHGFA----NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC  100 (398)
Q Consensus        38 ~~~vGR~----~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~  100 (398)
                      ++|++.+    ..++.+..++...........+.|+|++|+|||+||+.+++.  .......++++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~   89 (202)
T 2w58_A           25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVY   89 (202)
T ss_dssp             TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEE
T ss_pred             hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence            5566544    344556666654211112278999999999999999999886  333333445555

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.26  E-value=1.5e-06  Score=88.08  Aligned_cols=69  Identities=12%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..+++++++..+++.+..++-+++|||+.   |......+...+. ...+.++|++||+.+....   .++++.++
T Consensus       477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~---~d~i~~l~  549 (578)
T 4a82_A          477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH---ADKIVVIE  549 (578)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT---CSEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc---CCEEEEEE
Confidence            47999999999999999999999999998   4444444443332 2346789999999876543   35555553

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.25  E-value=2.3e-06  Score=87.05  Aligned_cols=69  Identities=12%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ..+++++++..+++.+..++-+++|||+.   |......+...+. ...|.++|++||+.+....+   ++++.++
T Consensus       491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~---d~i~~l~  563 (598)
T 3qf4_B          491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA---DLIIVLR  563 (598)
T ss_dssp             TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHC---SEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC---CEEEEEE
Confidence            47899999999999999999999999999   4433333333332 12478999999998877653   4555553

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=3.1e-06  Score=81.21  Aligned_cols=178  Identities=11%  Similarity=0.144  Sum_probs=100.4

Q ss_pred             CCCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           37 PANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      -+++.|.++.++.|.+.+..         ...-...+-|.++||+|+|||.||+++++.  ....|-   .+. .+.-.+
T Consensus       181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~fi---~v~-~s~l~s  254 (437)
T 4b4t_I          181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATFL---RIV-GSELIQ  254 (437)
T ss_dssp             GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEEE---EEE-SGGGCC
T ss_pred             ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCEE---EEE-HHHhhh
Confidence            36788999999988886543         012345688999999999999999999987  333331   222 111000


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhH--
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKV--  169 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~--  169 (398)
                                    .      .-......++..+..+-...+++|++|+++..             ..   ...+...  
T Consensus       255 --------------k------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD  314 (437)
T 4b4t_I          255 --------------K------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD  314 (437)
T ss_dssp             --------------S------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred             --------------c------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence                          0      00122223334444455667999999998821             11   1111111  


Q ss_pred             -cCCCCCCEEEEEeCChHHHHHh-c---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          170 -LPRGYGERLIITSRNEKLTTEM-V---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       170 -l~~~~gs~IIiTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                       +....+..||.||...+..... .   ..+..++++ +++.++...+|+..+.......+-    ....|++.+.|..-
T Consensus       315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~-lPd~~~R~~Il~~~l~~~~l~~dv----dl~~LA~~T~GfSG  389 (437)
T 4b4t_I          315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE-NPDLSTKKKILGIHTSKMNLSEDV----NLETLVTTKDDLSG  389 (437)
T ss_dssp             HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC-CCCHHHHHHHHHHHHTTSCBCSCC----CHHHHHHHCCSCCH
T ss_pred             CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC-CcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCCCH
Confidence             2223455677788665543321 1   114456774 455477778887665443222111    35667788888764


Q ss_pred             h
Q 015891          245 D  245 (398)
Q Consensus       245 a  245 (398)
                      |
T Consensus       390 A  390 (437)
T 4b4t_I          390 A  390 (437)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.23  E-value=6.5e-06  Score=85.59  Aligned_cols=179  Identities=11%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             CCCCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           36 PPANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      .-+++.|.++.+++|.+++..         ...-..++-|.++|++|+|||+||+++++.  ...+|   +.+. .+   
T Consensus       202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~-~~---  272 (806)
T 3cf2_A          202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLIN-GP---  272 (806)
T ss_dssp             CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEE-HH---
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEE-hH---
Confidence            346788999999998887542         112245778999999999999999999998  43332   2232 11   


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL---  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l---  170 (398)
                             ++...          ........++..+..+....+.+|+|||++..             .....|...+   
T Consensus       273 -------~l~sk----------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~  335 (806)
T 3cf2_A          273 -------EIMSK----------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL  335 (806)
T ss_dssp             -------HHHSS----------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC
T ss_pred             -------Hhhcc----------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc
Confidence                   11110          00122333445555555678999999999832             1122222222   


Q ss_pred             CCCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          171 PRGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       171 ~~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      ....+..||.||...+.... +.   .-.+.++++..+. ++...+++..........+.    ....|++++.|..-+
T Consensus       336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~-~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfsga  409 (806)
T 3cf2_A          336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA-TGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGA  409 (806)
T ss_dssp             CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH-HHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCCHH
T ss_pred             cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH-HHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCCHH
Confidence            22234556667765432221 11   1255788865554 66777777655432211111    356677888877643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.22  E-value=1.3e-05  Score=78.66  Aligned_cols=178  Identities=16%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             CCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           35 KPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      ..-++++|.++.++++.+++..-.        .....+-+.|+|++|+|||+||+.+++.  ....|   +.+. .+.-.
T Consensus        13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is-~~~~~   86 (476)
T 2ce7_A           13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHIS-GSDFV   86 (476)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEE-GGGTT
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCC-HHHHH
Confidence            344679999998888877654310        1122345889999999999999999886  22222   2222 22110


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------------HHHHHHHhHc
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------------EVCKHLSKVL  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l  170 (398)
                      ..                    .........+..+.......+.+|+|||++..                .....+...+
T Consensus        87 ~~--------------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l  146 (476)
T 2ce7_A           87 EL--------------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM  146 (476)
T ss_dssp             TC--------------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred             HH--------------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence            00                    00122344455666666778999999999631                1122222222


Q ss_pred             C---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+..||.||+..+.... +.   .....+.+++.+. ++...+++.........  +..  ....|++.+.|..
T Consensus       147 d~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~-~~R~~Il~~~~~~~~l~--~~v--~l~~la~~t~G~s  221 (476)
T 2ce7_A          147 DGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM-LGRKKILEIHTRNKPLA--EDV--NLEIIAKRTPGFV  221 (476)
T ss_dssp             HHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBC--TTC--CHHHHHHTCTTCC
T ss_pred             hccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCH-HHHHHHHHHHHHhCCCc--chh--hHHHHHHhcCCCc
Confidence            1   2245677888877654321 11   1244778876665 55666666544432211  111  2345777788877

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.22  E-value=1e-05  Score=75.08  Aligned_cols=49  Identities=18%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             CCcccchhhHHHHHHHHhcc-----CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNR-----GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~-----~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.+..++.+...+...     ........+.|+|++|+|||++|+.+++.
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence            45889999999998888751     01112358999999999999999999876

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.19  E-value=1.7e-05  Score=73.49  Aligned_cols=146  Identities=10%  Similarity=0.079  Sum_probs=86.5

Q ss_pred             cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC-CCCccccceEEEEecCC-cccHHHHHHHHHHHc
Q 015891           42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP-DVKTQFVPRIWVCTMSG-QKTAESIVKRILKRL  119 (398)
Q Consensus        42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~l  119 (398)
                      |-++.++.|...+..    ++...+.++|++|+||||+|+.+.+.. ...........+. ... ..... .++++.+.+
T Consensus         1 g~~~~~~~L~~~i~~----~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~~~~~id-~ir~li~~~   74 (305)
T 2gno_A            1 GAKDQLETLKRIIEK----SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEGENIGID-DIRTIKDFL   74 (305)
T ss_dssp             ---CHHHHHHHHHHT----CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSSSCBCHH-HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHC----CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCcCCCCHH-HHHHHHHHH
Confidence            445667778888865    236789999999999999999997630 0111122334443 222 22221 223333333


Q ss_pred             CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHHHhcCCC
Q 015891          120 GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTTEMVGEE  195 (398)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~~~~~~~  195 (398)
                      ...+                     ..+++-++|+|+++  +....+.|...+.. .+.+.+|++|.+. .+...+... 
T Consensus        75 ~~~p---------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-  132 (305)
T 2gno_A           75 NYSP---------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-  132 (305)
T ss_dssp             TSCC---------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-
T ss_pred             hhcc---------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-
Confidence            2111                     01346799999999  45555666666642 3466777776554 454555444 


Q ss_pred             ceEEcCCCCChhHHHHHHHhhh
Q 015891          196 NLHQLQPLSDQESCWLIYRDSV  217 (398)
Q Consensus       196 ~~~~l~~L~~~e~~~~l~~~~~  217 (398)
                       .+++.+++. ++....+.+.+
T Consensus       133 -~~~f~~l~~-~~i~~~L~~~~  152 (305)
T 2gno_A          133 -VFRVVVNVP-KEFRDLVKEKI  152 (305)
T ss_dssp             -SEEEECCCC-HHHHHHHHHHH
T ss_pred             -eEeCCCCCH-HHHHHHHHHHh
Confidence             899999999 66666666654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.19  E-value=8.4e-07  Score=73.40  Aligned_cols=25  Identities=32%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++|+|++|+|||||++.+++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.18  E-value=6.5e-06  Score=81.41  Aligned_cols=176  Identities=12%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      ..+++|.+..++.|.+++...         ........+.|+|++|+|||+||+++++.  ....|   +.+. .     
T Consensus       203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn-~-----  271 (489)
T 3hu3_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLIN-G-----  271 (489)
T ss_dssp             GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEE-H-----
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEE-c-----
Confidence            356899999999999887541         01244567999999999999999999886  32222   2222 1     


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---  171 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---  171 (398)
                       ..    +...+          ...........+......++.+|+|||++..             .....|...+.   
T Consensus       272 -~~----l~~~~----------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~  336 (489)
T 3hu3_A          272 -PE----IMSKL----------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK  336 (489)
T ss_dssp             -HH----HHTSC----------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             -hH----hhhhh----------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence             11    11100          0112223344555556677899999999411             12222222222   


Q ss_pred             CCCCCEEEEEeCChHH-HHHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          172 RGYGERLIITSRNEKL-TTEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       172 ~~~gs~IIiTTR~~~v-~~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      ...+..||.||..... -..+.   .....+.+.+.+. ++...++...+.......+.    ...++++.+.|..
T Consensus       337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~-~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~s  407 (489)
T 3hu3_A          337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA-TGRLEILQIHTKNMKLADDV----DLEQVANETHGHV  407 (489)
T ss_dssp             TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred             cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCH-HHHHHHHHHHHhcCCCcchh----hHHHHHHHccCCc
Confidence            2334566667765432 11221   2244678877776 66777777655443222111    3455666776653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.18  E-value=2.4e-05  Score=70.91  Aligned_cols=47  Identities=23%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++|.+..+..+.+.+...  ......+.|+|++|+|||+||+.+++.
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~--~~~~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHL--APLDKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHH--TTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             ccceeCCHHHHHHHHHHHHH--hCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            56899999999888777652  123457889999999999999999987

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.16  E-value=8.4e-06  Score=85.34  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=80.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC---CCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP---DVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~---~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      +++|||+.+++.+...|..    ....-+.|+|++|+|||++|+.+++..   .+.......-++. +.-          
T Consensus       180 d~iiG~~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~-~~~----------  244 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-LDM----------  244 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C------------
T ss_pred             CCccCchHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE-ecc----------
Confidence            5799999999999999965    334458899999999999999998751   0111111111221 111          


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHH-----
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT-----  189 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~-----  189 (398)
                           +....      ..........+......++.+|++|  ...+....+...+. ....++|.||.......     
T Consensus       245 -----g~~~~------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~-~~~v~~I~at~~~~~~~~~~~d  310 (758)
T 3pxi_A          245 -----GTKYR------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA-RGELQCIGATTLDEYRKYIEKD  310 (758)
T ss_dssp             -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT-SSSCEEEEECCTTTTHHHHTTC
T ss_pred             -----ccccc------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh-cCCEEEEeCCChHHHHHHhhcc
Confidence                 00000      0111122334444445678999999  33333333433333 23456666665443111     


Q ss_pred             -HhcCCCceEEcCCCCChhHHHHHHHhhh
Q 015891          190 -EMVGEENLHQLQPLSDQESCWLIYRDSV  217 (398)
Q Consensus       190 -~~~~~~~~~~l~~L~~~e~~~~l~~~~~  217 (398)
                       .+......+.+++.+. ++...++....
T Consensus       311 ~al~rRf~~i~v~~p~~-~~~~~il~~~~  338 (758)
T 3pxi_A          311 AALERRFQPIQVDQPSV-DESIQILQGLR  338 (758)
T ss_dssp             SHHHHSEEEEECCCCCH-HHHHHHHHHTT
T ss_pred             HHHHhhCcEEEeCCCCH-HHHHHHHHHHH
Confidence             1111235688988887 66777777543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.16  E-value=4.9e-06  Score=88.21  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++||+.++..+...|..    .....+.|+|++|+|||+||+.+++.
T Consensus       170 d~viGr~~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHH
Confidence            6799999999999999865    33445789999999999999999875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.13  E-value=1e-05  Score=78.37  Aligned_cols=60  Identities=8%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             CCchHHHHHHHHHHHhCCC--cEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891          131 GQGLAFLDYVLQQQLIGKR--YLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       131 ~~~~~~~~~~l~~~l~~k~--~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~  190 (398)
                      .+++++++..+...+..++  -+|||||++   |....+.+...+. ...+..||++||+..++..
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~  361 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR  361 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence            4889999999999998888  999999999   4555555544443 2258899999999988753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.13  E-value=1.4e-05  Score=82.53  Aligned_cols=84  Identities=17%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             HHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCC---cEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          114 RILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKR---YLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       114 ~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~---~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      +.+..+++...  .......+++++++..+++.|..++   -+|+||++.   |......+...+.  ...|.+||++||
T Consensus       525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH  604 (670)
T 3ux8_A          525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH  604 (670)
T ss_dssp             HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            44555666432  2334458999999999999998765   599999999   4433333333332  234789999999


Q ss_pred             ChHHHHHhcCCCceEEc
Q 015891          184 NEKLTTEMVGEENLHQL  200 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l  200 (398)
                      +.+++..   .++++.+
T Consensus       605 d~~~~~~---~d~i~~l  618 (670)
T 3ux8_A          605 NLDVIKT---ADYIIDL  618 (670)
T ss_dssp             CHHHHTT---CSEEEEE
T ss_pred             CHHHHHh---CCEEEEe
Confidence            9987643   4667776

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.04  E-value=7.8e-07  Score=80.94  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=38.1

Q ss_pred             CCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           36 PPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++++|.+..++.+.+.+..-.        .....+.+.|+|++|+|||+||+.+++.
T Consensus         9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A            9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            34679999999988888765200        0112344889999999999999999886

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.02  E-value=1.5e-05  Score=72.18  Aligned_cols=113  Identities=17%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH--HHcCCCCCCCCCcCCCchHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL--KRLGVDDGTTNSFEGQGLAFLDY  139 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il--~~l~~~~~~~~~~~~~~~~~~~~  139 (398)
                      .-.+++|+|++|+|||||++.+..-  +...+...+++....-..-.... ..++  ..++..           ......
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~-----------~~~l~~   89 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----------TKSFAD   89 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----------BSCHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCCC-----------HHHHHH
Confidence            4679999999999999999999764  22222333333211100000000 0000  001110           122367


Q ss_pred             HHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          140 VLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      .+++.+..++-+|++|++.|.+....+....  ..|..|++|||+.+....
T Consensus        90 ~la~aL~~~p~illlDEp~D~~~~~~~l~~~--~~g~~vl~t~H~~~~~~~  138 (261)
T 2eyu_A           90 ALRAALREDPDVIFVGEMRDLETVETALRAA--ETGHLVFGTLHTNTAIDT  138 (261)
T ss_dssp             HHHHHHHHCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEECCSSHHHH
T ss_pred             HHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH--ccCCEEEEEeCcchHHHH
Confidence            7888888899999999998775544333222  247789999999775443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.02  E-value=1.5e-05  Score=83.42  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             HHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891          113 KRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS  182 (398)
Q Consensus       113 ~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT  182 (398)
                      .+++..+++...  .......+++++++..|++.|..+   +-++|||++.   |....+.+...+.  ...|..||++|
T Consensus       711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvis  790 (842)
T 2vf7_A          711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE  790 (842)
T ss_dssp             HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence            456777777652  334445899999999999999885   6999999999   4444444443332  23488999999


Q ss_pred             CChHHHHHhcCCCceEEcCC
Q 015891          183 RNEKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       183 R~~~v~~~~~~~~~~~~l~~  202 (398)
                      |+.+++ ..  .++++.+.|
T Consensus       791 Hdl~~i-~~--aDrii~L~p  807 (842)
T 2vf7_A          791 HKMQVV-AA--SDWVLDIGP  807 (842)
T ss_dssp             CCHHHH-TT--CSEEEEECS
T ss_pred             CCHHHH-Hh--CCEEEEECC
Confidence            999887 33  467788754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.02  E-value=3.6e-05  Score=72.40  Aligned_cols=173  Identities=16%  Similarity=0.155  Sum_probs=92.8

Q ss_pred             CCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +.++|.+..++.+...+... ........++|+|++|+||||||+.+++.  ....|.   ... ..-...         
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~~---------   89 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLVK---------   89 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCCS---------
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhcC---------
Confidence            56889988888888777531 01223467999999999999999999886  322221   111 100000         


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CC------------------CC
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RG------------------YG  175 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~------------------~g  175 (398)
                                       .......+ ..+ .++.++++|++..  ....+.+...+. ..                  +.
T Consensus        90 -----------------~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~  150 (334)
T 1in4_A           90 -----------------QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP  150 (334)
T ss_dssp             -----------------HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred             -----------------HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence                             11111111 111 2456888898873  233333332221 10                  01


Q ss_pred             CEEE-EEeCChHHHHHhcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          176 ERLI-ITSRNEKLTTEMVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       176 s~II-iTTR~~~v~~~~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..++ .|++...+...+... ...+.+++.+. ++...++.+.........+   .+.+..|++.+.|.|..+..
T Consensus       151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~-~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~  221 (334)
T 1in4_A          151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTV-KELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIR  221 (334)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHH
T ss_pred             eEEEEecCCcccCCHHHHHhcCceeeCCCCCH-HHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHH
Confidence            2233 344433322222122 34578999988 6677777764322222222   23678889999999976544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.01  E-value=2e-05  Score=73.96  Aligned_cols=107  Identities=16%  Similarity=0.072  Sum_probs=68.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCC--CchHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEG--QGLAFLDYV  140 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~--~~~~~~~~~  140 (398)
                      -..++|+|++|+|||||++.+..-  +. .-...+.+.... ...             .... ......  .+++.++..
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~-e~~-------------~~~~-~~~i~~~~ggg~~~r~~  232 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTE-EIV-------------FKHH-KNYTQLFFGGNITSADC  232 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSC-CCC-------------CSSC-SSEEEEECBTTBCHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCee-ccc-------------cccc-hhEEEEEeCCChhHHHH
Confidence            458999999999999999999876  22 224455555221 110             0000 000000  145677888


Q ss_pred             HHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891          141 LQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT  189 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~  189 (398)
                      +++.|..++-+|++|++.+.+..+.+.... . .+..+|+|||..+...
T Consensus       233 la~aL~~~p~ilildE~~~~e~~~~l~~~~-~-g~~tvi~t~H~~~~~~  279 (330)
T 2pt7_A          233 LKSCLRMRPDRIILGELRSSEAYDFYNVLC-S-GHKGTLTTLHAGSSEE  279 (330)
T ss_dssp             HHHHTTSCCSEEEECCCCSTHHHHHHHHHH-T-TCCCEEEEEECSSHHH
T ss_pred             HHHHhhhCCCEEEEcCCChHHHHHHHHHHh-c-CCCEEEEEEcccHHHH
Confidence            999999999999999999866555554332 2 2335889998876443

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.00  E-value=5.4e-05  Score=70.20  Aligned_cols=47  Identities=15%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++|++..+..+.+.+...  ......|.|+|++|+|||++|+.+++.
T Consensus         2 ~~iig~s~~~~~~~~~~~~~--a~~~~~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMV--APSDATVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHH--CSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHH--hCCCCcEEEECCCCchHHHHHHHHHHh
Confidence            45899999999999888762  233456889999999999999999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.00  E-value=2.8e-05  Score=85.65  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+++++++..+++.+-.++-++||||+.   |.+....+...+. ...|.++|++||+.+....   .++++.++
T Consensus       525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~---~d~i~vl~  598 (1284)
T 3g5u_A          525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN---ADVIAGFD  598 (1284)
T ss_dssp             CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT---CSEEEECS
T ss_pred             CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc---CCEEEEEE
Confidence            358999999999999999999999999999   4444444444433 2347899999999877654   35555554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.99  E-value=1.9e-05  Score=69.71  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-.+++|+|++|+|||||++.++..
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.96  E-value=5.5e-05  Score=79.14  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++||+.+++.+.+.|..    ....-+.|+|++|+|||++|+.+++.
T Consensus       186 d~~iGr~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            5799999999999999965    34566789999999999999999865

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.96  E-value=7e-05  Score=73.51  Aligned_cols=50  Identities=22%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             CCCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           37 PANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.++|.+..++.+..++... ......+.+.++|++|+|||+||+.+++.
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence            377999999988766554331 12233467999999999999999999876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.95  E-value=3.7e-06  Score=79.71  Aligned_cols=110  Identities=13%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCC----CCCcCCCchHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT----TNSFEGQGLAFLD  138 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~~~  138 (398)
                      ..+++|+|++|+|||||++.+...  +.......+..  +......           ......    .... ........
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t--~ed~~e~-----------~~~~~~~~v~q~~~-~~~~~~~~  186 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILT--IEDPIEF-----------VHESKKCLVNQREV-HRDTLGFS  186 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEE--EESSCCS-----------CCCCSSSEEEEEEB-TTTBSCHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEE--ccCcHHh-----------hhhccccceeeeee-ccccCCHH
Confidence            459999999999999999999764  22211222221  1111100           000000    0000 01112234


Q ss_pred             HHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          139 YVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..+++.|..++-+|++|++.+.+..+.+....  ..|..||+|+|+.+.+..
T Consensus       187 ~~La~aL~~~PdvillDEp~d~e~~~~~~~~~--~~G~~vl~t~H~~~~~~~  236 (356)
T 3jvv_A          187 EALRSALREDPDIILVGEMRDLETIRLALTAA--ETGHLVFGTLHTTSAAKT  236 (356)
T ss_dssp             HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEESCSSHHHH
T ss_pred             HHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH--hcCCEEEEEEccChHHHH
Confidence            57999999999999999999987766554443  237789999999876644

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.95  E-value=3e-05  Score=68.38  Aligned_cols=117  Identities=21%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCC--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTN--------------  127 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~--------------  127 (398)
                      .-.+++|.|++|+|||||++.++..  ....-..++|+. ...  ....+... +..++.......              
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVT-TEE--SRDSIIRQ-AKQFNWDFEEYIEKKLIIIDALMKEK   95 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEE-SSS--CHHHHHHH-HHHTTCCCGGGBTTTEEEEECCC---
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEE-ccc--CHHHHHHH-HHHhcchHHHHhhCCEEEEecccccc
Confidence            3468999999999999999999854  222112355555 322  33333332 224443221100              


Q ss_pred             ----CcCCCchHHHHHHHHHHHh-CCCc--EEEecCCC-----CH----HHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891          128 ----SFEGQGLAFLDYVLQQQLI-GKRY--LIVLDDFE-----DM----EVCKHLSKVLPRGYGERLIITSRNE  185 (398)
Q Consensus       128 ----~~~~~~~~~~~~~l~~~l~-~k~~--LlVLDdv~-----~~----~~~~~l~~~l~~~~gs~IIiTTR~~  185 (398)
                          .....+...+...+...+. .++-  +||+|++.     +.    ..++.+.... ...+..||+|||+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~-~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL-NKWNFTIYATSQYA  168 (235)
T ss_dssp             -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH-HHTTEEEEEEEC--
T ss_pred             CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH-HhCCCeEEEEeccC
Confidence                0001134444444444443 3666  99999998     32    2222232221 23478999999987

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.94  E-value=1.7e-05  Score=87.71  Aligned_cols=70  Identities=14%  Similarity=0.176  Sum_probs=51.6

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+++++++-.+++++-.++-+||||+++   |.+....+...+. ...++++|+++|.-+...   ..++++-|+
T Consensus      1216 ~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~---~aD~I~Vld 1289 (1321)
T 4f4c_A         1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM---NADCIAVVS 1289 (1321)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT---TCSEEEEES
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH---hCCEEEEEE
Confidence            347899999999999999999999999998   4455556666665 346788888888654332   345666654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.93  E-value=3.9e-05  Score=67.13  Aligned_cols=127  Identities=17%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCC---
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT---  125 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~---  125 (398)
                      .|..++..  .-..-.+++|.|++|+|||||++.++.     ..-..++|++ .........+ ..+...++.....   
T Consensus         8 ~LD~~l~G--gi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~-~~~~~~~~~~-~~~~~~~~~~~~~~~~   78 (220)
T 2cvh_A            8 SLDSLLGG--GFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVD-TEGGFSPERL-VQMAETRGLNPEEALS   78 (220)
T ss_dssp             HHHHHTTS--SBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEE-SSCCCCHHHH-HHHHHTTTCCHHHHHH
T ss_pred             HHHHhhcC--CCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEE-CCCCCCHHHH-HHHHHhcCCChHHHhh
Confidence            34455531  224456899999999999999999987     1123467776 5443344333 2333333321100   


Q ss_pred             -CCCcCCCchH---HHHHHHHHHHhCCCcEEEecCCCCH-----------HH-HHH---HHhHcCCCCCCEEEEEeCCh
Q 015891          126 -TNSFEGQGLA---FLDYVLQQQLIGKRYLIVLDDFEDM-----------EV-CKH---LSKVLPRGYGERLIITSRNE  185 (398)
Q Consensus       126 -~~~~~~~~~~---~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~-~~~---l~~~l~~~~gs~IIiTTR~~  185 (398)
                       .........+   .....+...+..++-+||+|++...           .. .+.   +.... ...+..||+|++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~vi~~~h~~  156 (220)
T 2cvh_A           79 RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIA-RKHNIPVIVINQVH  156 (220)
T ss_dssp             HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHH-HHHTCCEEEEECSS
T ss_pred             cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHH-HHcCCEEEEEeeEE
Confidence             0000111222   2233333333335889999998832           11 111   22221 22367899999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.93  E-value=1.1e-05  Score=88.78  Aligned_cols=68  Identities=15%  Similarity=0.186  Sum_probs=50.3

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++..+++++..++-+||||++.   |......+...+. ...|.+||++||+.+....   .++++.+
T Consensus      1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~---~dri~vl 1242 (1284)
T 3g5u_A         1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN---ADLIVVI 1242 (1284)
T ss_dssp             SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS---CSEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc---CCEEEEE
Confidence            47999999999999999999999999999   4444444444443 2347789999998876543   3555555

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.91  E-value=5.9e-05  Score=79.30  Aligned_cols=87  Identities=18%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891          113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS  182 (398)
Q Consensus       113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT  182 (398)
                      .+++..+++..  ........+++++++..+++.|..+   +-++|||++.   |......+...+.  ...|..||++|
T Consensus       826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis  905 (972)
T 2r6f_A          826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE  905 (972)
T ss_dssp             HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence            45677777765  2333445899999999999999875   4999999999   4444444433332  23478999999


Q ss_pred             CChHHHHHhcCCCceEEcCC
Q 015891          183 RNEKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       183 R~~~v~~~~~~~~~~~~l~~  202 (398)
                      |+.+++.   ..++++.+.|
T Consensus       906 Hdl~~i~---~aDrIivL~p  922 (972)
T 2r6f_A          906 HNLDVIK---TADYIIDLGP  922 (972)
T ss_dssp             CCHHHHT---TCSEEEEECS
T ss_pred             CCHHHHH---hCCEEEEEcC
Confidence            9998764   2467777754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.89  E-value=0.00021  Score=65.77  Aligned_cols=26  Identities=31%  Similarity=0.546  Sum_probs=23.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++.+.|+|++|+|||+||+++++.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999987

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.88  E-value=1.8e-05  Score=87.43  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++++-.++-++||||+.+   .+....+...+. ...+.++|++||.......   .++++.+
T Consensus       553 ~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~---aD~Iivl  625 (1321)
T 4f4c_A          553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN---ADLIISC  625 (1321)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT---CSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh---CCEEEEe
Confidence            4589999999999999999999999999983   222223333332 1246677777777654433   3455544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.88  E-value=6e-05  Score=78.84  Aligned_cols=149  Identities=19%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             CCcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIV  112 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~  112 (398)
                      ..++|.+..++.+...+....     .......+.++|++|+|||++|+.+++.  ....-...+.++ ++.-..     
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~-~s~~~~-----  562 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRID-MSEYME-----  562 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEE-GGGGCS-----
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEe-chhccc-----
Confidence            568999999999888887521     1122347999999999999999999876  222112233444 332110     


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC--CHHHHHHHHhHcCC------------CCCCE
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE--DMEVCKHLSKVLPR------------GYGER  177 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~--~~~~~~~l~~~l~~------------~~gs~  177 (398)
                               ...      .. ..    .+...+ .....+|+|||++  +.+....|...+..            ..+.+
T Consensus       563 ---------~~~------~~-~~----~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~  622 (758)
T 3pxi_A          563 ---------KHS------TS-GG----QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI  622 (758)
T ss_dssp             ---------SCC------CC--------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred             ---------ccc------cc-cc----hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence                     000      00 00    111222 2345699999998  44544444444431            13568


Q ss_pred             EEEEeCC-----hHH----H----HH-hcCCCceEEcCCCCChhHHHHHHHh
Q 015891          178 LIITSRN-----EKL----T----TE-MVGEENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       178 IIiTTR~-----~~v----~----~~-~~~~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      ||+||..     ..+    .    .. ......++.+.||+. ++...++..
T Consensus       623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~-~~~~~i~~~  673 (758)
T 3pxi_A          623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEK-KHLTEIVSL  673 (758)
T ss_dssp             EEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CH-HHHHHHHHH
T ss_pred             EEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCH-HHHHHHHHH
Confidence            8888872     111    0    00 112246889999988 656655544

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.88  E-value=7.6e-05  Score=78.72  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             HHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891          113 KRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS  182 (398)
Q Consensus       113 ~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT  182 (398)
                      .+++..+++...  .......+++++++..|++.|..+   +-|+|||++.   |....+.+...+.  ...|.+||++|
T Consensus       786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~  865 (916)
T 3pih_A          786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE  865 (916)
T ss_dssp             HHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            456666776542  233445899999999999999765   4799999999   4444444444433  23478999999


Q ss_pred             CChHHHHHhcCCCceEEcCC
Q 015891          183 RNEKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       183 R~~~v~~~~~~~~~~~~l~~  202 (398)
                      |+.+++..   .++++.|.|
T Consensus       866 HdL~~i~~---ADrIivLgp  882 (916)
T 3pih_A          866 HNLDVIKN---ADHIIDLGP  882 (916)
T ss_dssp             CCHHHHTT---CSEEEEEES
T ss_pred             CCHHHHHh---CCEEEEecC
Confidence            99987653   577888854

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.88  E-value=4e-05  Score=68.14  Aligned_cols=135  Identities=16%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTAESIVKRILKRLGVDD  123 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~  123 (398)
                      ..|..+|..  .-..-.+++|+|++|+|||||++.++.......    .-..++|+. ......... +..++..++...
T Consensus        11 ~~LD~~l~g--gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~-~~~~~~~~~-~~~~~~~~g~~~   86 (243)
T 1n0w_A           11 KELDKLLQG--GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID-TEGTFRPER-LLAVAERYGLSG   86 (243)
T ss_dssp             HHHHHHTTT--SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCCHHH-HHHHHHHTTCCH
T ss_pred             hHHHHhhcC--CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE-CCCCcCHHH-HHHHHHHcCCCH
Confidence            345555532  223567999999999999999999987421221    124577777 444333332 233445555432


Q ss_pred             C----CCCCcCCCchHH---HHHHHHHHHh-CCCcEEEecCCCCH---H-------H-----HHHHHhHc-C--CCCCCE
Q 015891          124 G----TTNSFEGQGLAF---LDYVLQQQLI-GKRYLIVLDDFEDM---E-------V-----CKHLSKVL-P--RGYGER  177 (398)
Q Consensus       124 ~----~~~~~~~~~~~~---~~~~l~~~l~-~k~~LlVLDdv~~~---~-------~-----~~~l~~~l-~--~~~gs~  177 (398)
                      .    ............   ....+...+. .++-+||+|++...   .       .     ...+...+ .  ...++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t  166 (243)
T 1n0w_A           87 SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA  166 (243)
T ss_dssp             HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred             HHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            0    000000112222   2223444443 47889999998832   1       1     11111111 1  234889


Q ss_pred             EEEEeCChH
Q 015891          178 LIITSRNEK  186 (398)
Q Consensus       178 IIiTTR~~~  186 (398)
                      ||+|++...
T Consensus       167 vi~~~h~~~  175 (243)
T 1n0w_A          167 VVITNQVVA  175 (243)
T ss_dssp             EEEEC----
T ss_pred             EEEEeeeee
Confidence            999998653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.82  E-value=0.00057  Score=61.25  Aligned_cols=51  Identities=22%  Similarity=0.280  Sum_probs=35.9

Q ss_pred             CCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           36 PPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++++|.+....++.++...-.        .-.-.+-+.|+|++|+|||||++.+++.
T Consensus        14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34678998877777766543210        0111223999999999999999999986

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.78  E-value=0.00064  Score=61.88  Aligned_cols=53  Identities=21%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             CCCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           34 SKPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++++|.+...+++.++.....        .-.-.+-++|+|++|+|||||++.++..
T Consensus        36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence            3444679999988877776554210        0011223899999999999999999987

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.76  E-value=0.00035  Score=63.62  Aligned_cols=155  Identities=12%  Similarity=0.068  Sum_probs=80.2

Q ss_pred             CCCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891           37 PANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~  107 (398)
                      -+++.|.++..+.|.+.+..         ...-.-.+-++|+|++|+|||||++.++..  ...   ..+.+. ...-..
T Consensus         9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~-g~~l~~   82 (274)
T 2x8a_A            9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVK-GPELLN   82 (274)
T ss_dssp             ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEE-TTTTCS
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEE-cHHHHh
Confidence            36788988888888775431         001111233999999999999999999886  222   123333 111000


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcCC--
Q 015891          108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLPR--  172 (398)
Q Consensus       108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~--  172 (398)
                      .                    ............+.......+.++++|+++..             .....+...+..  
T Consensus        83 ~--------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~  142 (274)
T 2x8a_A           83 M--------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE  142 (274)
T ss_dssp             S--------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC
T ss_pred             h--------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc
Confidence            0                    00000011112222222446789999999731             111222222322  


Q ss_pred             -CCCCEEEEEeCChHHHHHh----cCCCceEEcCCCCChhHHHHHHHhhhC
Q 015891          173 -GYGERLIITSRNEKLTTEM----VGEENLHQLQPLSDQESCWLIYRDSVR  218 (398)
Q Consensus       173 -~~gs~IIiTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~~l~~~~~~  218 (398)
                       ....-++.+|...++....    ...+..+.++..+. ++...+++....
T Consensus       143 ~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~-~~r~~il~~~~~  192 (274)
T 2x8a_A          143 ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP-ADRLAILKTITK  192 (274)
T ss_dssp             STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH-HHHHHHHHHHTT
T ss_pred             ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH-HHHHHHHHHHHh
Confidence             1234456677766544321    12366778865555 777778776553

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.76  E-value=0.00015  Score=67.88  Aligned_cols=43  Identities=21%  Similarity=0.071  Sum_probs=37.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|++..++.+...+..      ...+.|+|++|+|||+||+.+.+.
T Consensus        27 ~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~   69 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKT   69 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHH
T ss_pred             cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHH
Confidence            5689999999998888765      246899999999999999999886

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.74  E-value=9.5e-05  Score=67.52  Aligned_cols=123  Identities=14%  Similarity=0.052  Sum_probs=61.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--------cccceEEEEecCCccc-HHHHH------------HHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--------QFVPRIWVCTMSGQKT-AESIV------------KRILKRLG  120 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--------~F~~~~~v~~v~~~~~-~~~~~------------~~il~~l~  120 (398)
                      .-.+++|+|++|+|||||++.++.......        .-..++++. ...... ....+            ..++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~-~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~  107 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP-AEDPPTAIHHRLHALGAHLSAEERQAVADGLL  107 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE-SSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEE-CCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence            457899999999999999999875310000        012355665 443321 11111            12234444


Q ss_pred             CCCCCCCCcC-CCchHHHHHHHHHHHhCCCcEEEecCCCC--------HHHHHHHHhHcC---CCCCCEEEEEeCChHHH
Q 015891          121 VDDGTTNSFE-GQGLAFLDYVLQQQLIGKRYLIVLDDFED--------MEVCKHLSKVLP---RGYGERLIITSRNEKLT  188 (398)
Q Consensus       121 ~~~~~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--------~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~  188 (398)
                      +......... .+..+  ...+. .+..++-+||||.+..        ......+...+.   ...|+.||++||+....
T Consensus       108 l~~~~~~~~~~ls~g~--~~~i~-~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          108 IQPLIGSLPNIMAPEW--FDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             ECCCTTSCCCTTSHHH--HHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             EeecCCCCcccCCHHH--HHHHH-HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence            3332111111 22222  33343 3344688999999884        111122222221   23488999999987543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.73  E-value=0.00062  Score=67.23  Aligned_cols=53  Identities=21%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             CCCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           34 SKPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        34 ~~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++++|.+..+..+.++...-.        ...-.+-+.|+|++|+||||||++++..
T Consensus        27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            3445789999988888777654310        0111334999999999999999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.72  E-value=7.2e-06  Score=71.69  Aligned_cols=54  Identities=9%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcC-CCCCCEEEEEeCChHHHH
Q 015891          134 LAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLP-RGYGERLIITSRNEKLTT  189 (398)
Q Consensus       134 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~  189 (398)
                      +++++..+.+.+..++-+|+||++.+. ..+.+...+. ...|..|| +||+...+.
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~  162 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVD  162 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence            444455667778889999999999954 3333333332 23477888 999886544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.69  E-value=0.0001  Score=69.72  Aligned_cols=134  Identities=17%  Similarity=0.226  Sum_probs=70.9

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc---c-ceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF---V-PRIWVCTMSGQKTAESIVKRILKRLGVDDG  124 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F---~-~~~~v~~v~~~~~~~~~~~~il~~l~~~~~  124 (398)
                      .|..+|..  .-..-.++.|+|++|+|||||+++++.........   . .++|++ ....+.. ..+..+...+++...
T Consensus       119 ~LD~lL~g--gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~-~e~~~~~-~~i~~i~q~~~~~~~  194 (349)
T 1pzn_A          119 SLDKLLGG--GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRP-ERIREIAQNRGLDPD  194 (349)
T ss_dssp             HHHHHHTS--SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCH-HHHHHHHHTTTCCHH
T ss_pred             HHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe-CCCCCCH-HHHHHHHHHcCCCHH
Confidence            34444432  33467899999999999999999998762112222   2 347887 4433322 223444554443321


Q ss_pred             CC-------CCcCCCchHHHHHHHHHHHh------CCCcEEEecCCCCH-HH--------------HHHHHhHcC---CC
Q 015891          125 TT-------NSFEGQGLAFLDYVLQQQLI------GKRYLIVLDDFEDM-EV--------------CKHLSKVLP---RG  173 (398)
Q Consensus       125 ~~-------~~~~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~~~-~~--------------~~~l~~~l~---~~  173 (398)
                      ..       .........+....+...+.      .++-+||+|.+... +.              ...+...+.   ..
T Consensus       195 ~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~  274 (349)
T 1pzn_A          195 EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL  274 (349)
T ss_dssp             HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            00       00000112223334444443      47889999999843 11              112221221   23


Q ss_pred             CCCEEEEEeCChH
Q 015891          174 YGERLIITSRNEK  186 (398)
Q Consensus       174 ~gs~IIiTTR~~~  186 (398)
                      .+..||+|++...
T Consensus       275 ~~~tvii~~h~~~  287 (349)
T 1pzn_A          275 YDIAVFVTNQVQA  287 (349)
T ss_dssp             TTCEEEEEEECC-
T ss_pred             cCcEEEEEccccc
Confidence            4789999998653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.67  E-value=7.1e-05  Score=70.69  Aligned_cols=103  Identities=18%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             hHHHHHHHHh-ccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891           46 EELHLQKLLS-NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG  124 (398)
Q Consensus        46 ~~~~l~~~L~-~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~  124 (398)
                      -...|..+|. .  .-..-.++.|.|++|+||||||.+++..  ....=..++|++ .....+..     .++.++....
T Consensus        45 G~~~LD~~Lg~G--Gl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~-~E~~~~~~-----~a~~lG~~~~  114 (349)
T 2zr9_A           45 GSISLDVALGIG--GLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFID-AEHALDPE-----YAKKLGVDTD  114 (349)
T ss_dssp             SCHHHHHHTSSS--SEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCGG
T ss_pred             CCHHHHHHhccC--CccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE-CCCCcCHH-----HHHHcCCCHH
Confidence            3445666664 2  2235678999999999999999999765  222223467877 65544432     2555665432


Q ss_pred             CCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891          125 TTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE  158 (398)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~  158 (398)
                      ..........++....+..... .+.-+||+|.+.
T Consensus       115 ~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~  149 (349)
T 2zr9_A          115 SLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVA  149 (349)
T ss_dssp             GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred             HeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence            2211112345555544444443 357899999987

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.67  E-value=9e-05  Score=74.10  Aligned_cols=127  Identities=14%  Similarity=0.058  Sum_probs=73.9

Q ss_pred             HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC-------
Q 015891           50 LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD-------  122 (398)
Q Consensus        50 l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~-------  122 (398)
                      +...|..  .-..-.+++|.|++|+|||||++.++..  ....=..++++. ....  ...+.... ..++..       
T Consensus       270 ld~vL~g--~i~~G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~-~ee~--~~~l~~~~-~~~g~~~~~~~~~  341 (525)
T 1tf7_A          270 LDEMCGG--GFFKDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFA-YEES--RAQLLRNA-YSWGMDFEEMERQ  341 (525)
T ss_dssp             HHHHTTS--SEESSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEE-SSSC--HHHHHHHH-HTTSCCHHHHHHT
T ss_pred             HHHHhCC--CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEE-EeCC--HHHHHHHH-HHcCCCHHHHHhC
Confidence            4444432  2245679999999999999999999765  111111234544 2221  22222221 222221       


Q ss_pred             ---C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HH-----HHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          123 ---D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---ME-----VCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       123 ---~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~-----~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                         . ....+...+.++.++..+.+.+..++-+||+| +.+   ..     ..+.+...+.  ...|..||+||++.
T Consensus       342 g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          342 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence               0 11122335778888889999999999999999 652   12     2333322222  23578999999986

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.65  E-value=0.00011  Score=70.49  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccHHHHHHHHHHHcCCCCC----CCCCcCCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG----TTNSFEGQ  132 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~  132 (398)
                      ..-.++.|+|++|+|||||++.++-......    .-..++|++ ....+.... +..+++.+++...    ........
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid-~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~  253 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID-TEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAY  253 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe-CCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccC
Confidence            3457999999999999999997753211211    123477777 444444333 3445666665421    00000112


Q ss_pred             chHHHH---HHHHHHH-hCCCcEEEecCCCCH-----H--------H--HHHHHhHc---CCCCCCEEEEEeCCh
Q 015891          133 GLAFLD---YVLQQQL-IGKRYLIVLDDFEDM-----E--------V--CKHLSKVL---PRGYGERLIITSRNE  185 (398)
Q Consensus       133 ~~~~~~---~~l~~~l-~~k~~LlVLDdv~~~-----~--------~--~~~l~~~l---~~~~gs~IIiTTR~~  185 (398)
                      ......   ..+...+ ..+.-+||+|.+...     .        +  ...+...+   ....+..||+|+|..
T Consensus       254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~  328 (400)
T 3lda_A          254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV  328 (400)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence            222222   2222322 346889999998731     1        0  01111111   123488999999863

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.57  E-value=0.00063  Score=71.09  Aligned_cols=49  Identities=18%  Similarity=0.190  Sum_probs=38.2

Q ss_pred             CCcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.+..++.+...+....     .......+.++|++|+|||++|+.+++.
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~  511 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA  511 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence            468899999988888776410     1123457999999999999999999886

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.54  E-value=9.1e-05  Score=77.03  Aligned_cols=177  Identities=15%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             CCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891           36 PPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK  106 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~  106 (398)
                      .-.++.|.++..+.|.+.+...         ......+-+.++|++|+|||.||+++++.  ....     ++. ++.  
T Consensus       475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~-v~~--  544 (806)
T 3cf2_A          475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FIS-IKG--  544 (806)
T ss_dssp             CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEE-CCH--
T ss_pred             CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEE-ecc--
Confidence            3466788888888888765431         12234567899999999999999999998  3322     222 221  


Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------------HHHHHHHhHc
Q 015891          107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------------EVCKHLSKVL  170 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l  170 (398)
                            .+++...          -......++..+..+-...+++|+||+++..                .....|...+
T Consensus       545 ------~~l~s~~----------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~m  608 (806)
T 3cf2_A          545 ------PELLTMW----------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM  608 (806)
T ss_dssp             ------HHHHTTT----------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHH
T ss_pred             ------chhhccc----------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHH
Confidence                  1122111          0123344455555555668999999999832                0112222222


Q ss_pred             C---CCCCCEEEEEeCChHHHHH-h-c--CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891          171 P---RGYGERLIITSRNEKLTTE-M-V--GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN  243 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~~-~-~--~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP  243 (398)
                      .   ...+.-||-||...+.+.. + .  .-+..+.++..+. ++...+|+..+.......+-    ....|++.+.|..
T Consensus       609 dg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~-~~R~~il~~~l~~~~~~~~~----dl~~la~~t~g~S  683 (806)
T 3cf2_A          609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE-KSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFS  683 (806)
T ss_dssp             HSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC------CHHHHTTTTTSSCC--CCC------------------
T ss_pred             hCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH-HHHHHHHHHHhcCCCCCCCC----CHHHHHHhCCCCC
Confidence            2   2223334445543322111 1 1  2367788855444 77778887766543222111    3456677777765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.53  E-value=0.00035  Score=74.06  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=37.8

Q ss_pred             CcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++|.+..++.+...+....     .......+.|+|++|+|||++|+.+++.
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~  611 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT  611 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999888876521     1122368999999999999999999876

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.52  E-value=0.00019  Score=67.72  Aligned_cols=103  Identities=18%  Similarity=0.115  Sum_probs=63.0

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCC
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT  126 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~  126 (398)
                      ...|...|.. +.-..-.++.|.|++|+|||||+.+++..  ....=..++|++ .....+..     .++.++......
T Consensus        46 ~~~LD~~Lg~-GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId-~E~s~~~~-----ra~rlgv~~~~l  116 (356)
T 3hr8_A           46 SLAIDIATGV-GGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFID-AEHALDPV-----YAKNLGVDLKSL  116 (356)
T ss_dssp             CHHHHHHTSS-SSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHHTCCGGGC
T ss_pred             CHHHHHHhcc-CCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEe-cccccchH-----HHHHcCCchhhh
Confidence            3456666641 12345679999999999999999999865  222222367777 55444433     455666553322


Q ss_pred             CCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891          127 NSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE  158 (398)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~  158 (398)
                      ........++....+...+. .+.-++|+|.+.
T Consensus       117 ~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~  149 (356)
T 3hr8_A          117 LISQPDHGEQALEIVDELVRSGVVDLIVVDSVA  149 (356)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             hhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence            21223445555555555554 567899999876

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.52  E-value=0.00024  Score=75.20  Aligned_cols=118  Identities=19%  Similarity=0.091  Sum_probs=61.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC--CCccccc--eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVP--RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFL  137 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~--~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~  137 (398)
                      ...+++|+|++|+||||+++.+.--..  ....|-.  ...+..+.          .++..++......  ...+.....
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d----------~i~~~ig~~d~l~--~~lStf~~e  728 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD----------CILARVGAGDSQL--KGVSTFMAE  728 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS----------EEEEECC-----------CHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH----------HHHHhcCchhhHH--HhHhhhHHH
Confidence            457999999999999999999821000  0001110  11111000          0111111111100  012344444


Q ss_pred             HHHHHHHH--hCCCcEEEecCCC---CHHHHHH----HHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891          138 DYVLQQQL--IGKRYLIVLDDFE---DMEVCKH----LSKVLPRGYGERLIITSRNEKLTTEM  191 (398)
Q Consensus       138 ~~~l~~~l--~~k~~LlVLDdv~---~~~~~~~----l~~~l~~~~gs~IIiTTR~~~v~~~~  191 (398)
                      ...+...+  ..++-|++||++.   |......    +...+....|+++|++||+.+++..+
T Consensus       729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~la  791 (934)
T 3thx_A          729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALA  791 (934)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGG
T ss_pred             HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHh
Confidence            45555555  6788999999997   4422222    22223233589999999998877643

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.49  E-value=0.00015  Score=68.26  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=34.5

Q ss_pred             CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-++++|.+...+.+...+..    .....+.|+|++|+|||+||+.+++.
T Consensus        22 ~f~~i~G~~~~~~~l~~~~~~----~~~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           22 PFSAIVGQEDMKLALLLTAVD----PGIGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHC----GGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CchhccChHHHHHHHHHHhhC----CCCceEEEECCCCccHHHHHHHHHHh
Confidence            346699998866665444432    12334999999999999999999876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.47  E-value=0.00022  Score=65.95  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEec--CCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTM--SGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY  139 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  139 (398)
                      ..+++.|+|++|+|||+||.+++..     .-..+.|+. +  .+.             +...       . .+.+....
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs-~~~eE~-------------v~~~-------~-~~le~~l~  174 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYAT-VRFGEP-------------LSGY-------N-TDFNVFVD  174 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEE-EEBSCS-------------STTC-------B-CCHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEE-ecchhh-------------hhhh-------h-cCHHHHHH
Confidence            3467789999999999999999874     112345666 4  221             0000       0 23455555


Q ss_pred             HHHHHHhCCCcEEEecCCCC
Q 015891          140 VLQQQLIGKRYLIVLDDFED  159 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv~~  159 (398)
                      .+.+.+...+ +||+|++..
T Consensus       175 ~i~~~l~~~~-LLVIDsI~a  193 (331)
T 2vhj_A          175 DIARAMLQHR-VIVIDSLKN  193 (331)
T ss_dssp             HHHHHHHHCS-EEEEECCTT
T ss_pred             HHHHHHhhCC-EEEEecccc
Confidence            5666666666 999999983

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.46  E-value=0.00038  Score=64.03  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-.+++|.|++|+|||||++.++..
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999765

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.45  E-value=0.00063  Score=64.50  Aligned_cols=105  Identities=17%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891           45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG  124 (398)
Q Consensus        45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~  124 (398)
                      .-...|..+|.. +.-..-.++.|.|++|+||||||.+++..  ....-..++|++ .....+..     .+..++....
T Consensus        57 TG~~~LD~~Lg~-GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~-~E~s~~~~-----~a~~~g~d~~  127 (366)
T 1xp8_A           57 TGSLSLDLALGV-GGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFID-AEHALDPV-----YARALGVNTD  127 (366)
T ss_dssp             CSCHHHHHHTSS-SSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCGG
T ss_pred             CCCHHHHHHhCC-CCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEE-CCCChhHH-----HHHHcCCCHH
Confidence            334556666641 02234568999999999999999998765  222223578888 66554432     2455665432


Q ss_pred             CCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891          125 TTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE  158 (398)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~  158 (398)
                      ..........++....+..... ...-+||+|.+.
T Consensus       128 ~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~  162 (366)
T 1xp8_A          128 ELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA  162 (366)
T ss_dssp             GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred             HceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence            2111112345565666655554 356799999876

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.45  E-value=0.00062  Score=63.99  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=44.1

Q ss_pred             CCchHHH------HHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEE
Q 015891          131 GQGLAFL------DYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQ  199 (398)
Q Consensus       131 ~~~~~~~------~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~  199 (398)
                      .++++++      +..+.+.+..++-+++||++.   |......+...+.  ...+..||++||+..+...   .++++.
T Consensus       249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~---~d~~~~  325 (339)
T 3qkt_A          249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA---ADHVIR  325 (339)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG---CSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh---CCEEEE
Confidence            6677776      345666777889999999999   4544444433332  2346689999999876443   245555


Q ss_pred             cC
Q 015891          200 LQ  201 (398)
Q Consensus       200 l~  201 (398)
                      +.
T Consensus       326 l~  327 (339)
T 3qkt_A          326 IS  327 (339)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.45  E-value=0.00021  Score=68.17  Aligned_cols=112  Identities=17%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceE-EEEecCCcccHHHHHHHHHH--HcCCCCCCCCCcCCCchHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRI-WVCTMSGQKTAESIVKRILK--RLGVDDGTTNSFEGQGLAFLD  138 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-~v~~v~~~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~~~~  138 (398)
                      ...+++|+|++|+|||||++.+...  +.......+ ++. -.-....... ..++.  .++..           .....
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e-~~~e~~~~~~-~~~v~Q~~~g~~-----------~~~~~  199 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE-DPIEYVFKHK-KSIVNQREVGED-----------TKSFA  199 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE-SSCCSCCCCS-SSEEEEEEBTTT-----------BSCSH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec-ccHhhhhccC-ceEEEeeecCCC-----------HHHHH
Confidence            4578999999999999999999764  222212333 222 1100000000 00000  01110           11124


Q ss_pred             HHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          139 YVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..++..+...+-+|++|++.+.+.........  ..|..|+.|+|+.+....
T Consensus       200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~--~~g~~vi~t~H~~~~~~~  249 (372)
T 2ewv_A          200 DALRAALREDPDVIFVGEMRDLETVETALRAA--ETGHLVFGTLHTNTAIDT  249 (372)
T ss_dssp             HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH--TTTCEEEECCCCCSHHHH
T ss_pred             HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH--hcCCEEEEEECcchHHHH
Confidence            57888888899999999999776544332222  346779999998765443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.45  E-value=0.00011  Score=68.32  Aligned_cols=48  Identities=13%  Similarity=0.222  Sum_probs=32.7

Q ss_pred             CCcccc----hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGF----ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR----~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++|++.    ...++.+.+++... .......+.|+|++|+|||+||.++++.
T Consensus       124 d~f~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          124 SDIDVNNASRMEAFSAILDFVEQY-PSAEQKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             GGSCCCSHHHHHHHHHHHHHHHHC-SCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hhCcCCChHHHHHHHHHHHHHHhc-cccCCceEEEECCCCCCHHHHHHHHHHH
Confidence            456543    33444555666542 1112578999999999999999999886

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.44  E-value=0.00047  Score=64.32  Aligned_cols=60  Identities=15%  Similarity=0.115  Sum_probs=43.0

Q ss_pred             CCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHH
Q 015891          130 EGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTT  189 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~  189 (398)
                      ..+.+++++..+.+.+.    ..+.+++||++.   |....+.+...+. ...+..||+|||+..+..
T Consensus       219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~  286 (322)
T 1e69_A          219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME  286 (322)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG
T ss_pred             hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh
Confidence            47889999999999886    567899999999   4444444444433 224678999999876544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.41  E-value=0.00057  Score=65.15  Aligned_cols=49  Identities=18%  Similarity=0.185  Sum_probs=37.3

Q ss_pred             CCcccchhhHHHHHHHHh----cc----------------------CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLS----NR----------------------GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~----~~----------------------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.+..++.|...+.    ..                      ........+.|+|++|+|||++|+.+++.
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence            458999999998887772    10                      01123456899999999999999999987

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.40  E-value=0.00015  Score=76.69  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      +...+++|+|++|+|||||.+.+.
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCchHHHHHHHH
Confidence            346799999999999999999874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.40  E-value=0.00042  Score=74.29  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=60.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCC---CCC-ccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKP---DVK-TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD  138 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~---~~~-~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~  138 (398)
                      ..+++|+|++|+|||||++.+.--.   ++. .-+.....+. +...         ++..++.........+.-..+...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~-v~d~---------I~~rig~~d~~~~~~stf~~em~~  858 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLT-PIDR---------VFTRLGASDRIMSGESTFFVELSE  858 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEEC-CCSB---------EEEECC---------CHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCC-HHHH---------HHHHcCCHHHHhhchhhhHHHHHH
Confidence            5799999999999999999882110   011 0011111111 1110         001111111100000000111122


Q ss_pred             HHHHHHHhCCCcEEEecCCC---CHHH-----HHHHHhHcCCCCCCEEEEEeCChHHHHHhcCC
Q 015891          139 YVLQQQLIGKRYLIVLDDFE---DMEV-----CKHLSKVLPRGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~---~~~~-----~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ..+...+..++-||+||++.   +...     +..+. .+....|+++|++||+.+++...+..
T Consensus       859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~-~L~~~~g~~vl~~TH~~el~~~~~d~  921 (1022)
T 2o8b_B          859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVK-ELAETIKCRTLFSTHYHSLVEDYSQN  921 (1022)
T ss_dssp             HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHH-HHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred             HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence            34445567789999999996   4322     22222 22223488999999999988775443

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.40  E-value=6.7e-05  Score=66.08  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      .-.++.++|+.|+||||++..++.+  ...+-..++.+. ......   ....+++.++.......   ..........+
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~-~~~d~r---~~~~i~srlG~~~~~~~---~~~~~~i~~~i   81 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFK-PKIDTR---SIRNIQSRTGTSLPSVE---VESAPEILNYI   81 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEE-ECCCGG---GCSSCCCCCCCSSCCEE---ESSTHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEE-eccCch---HHHHHHHhcCCCccccc---cCCHHHHHHHH
Confidence            4578999999999999999888766  322222233332 111111   11234444554432211   12223333333


Q ss_pred             HHHHhC-CCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891          142 QQQLIG-KRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITSRNE  185 (398)
Q Consensus       142 ~~~l~~-k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTTR~~  185 (398)
                      ...+.. +.-+||+|++.  +.++.+.+....+  .+..||+|-++.
T Consensus        82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~  126 (223)
T 2b8t_A           82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDK  126 (223)
T ss_dssp             HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSB
T ss_pred             HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccc
Confidence            333322 35699999998  3456555554333  378899999844

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.38  E-value=1.6e-05  Score=78.00  Aligned_cols=54  Identities=7%  Similarity=-0.017  Sum_probs=35.2

Q ss_pred             CCchHHHHHHHHHH--HhCCCcE----EEecC-CCCH---HHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891          131 GQGLAFLDYVLQQQ--LIGKRYL----IVLDD-FEDM---EVCKHLSKVLPRGYGERLIITSRNEK  186 (398)
Q Consensus       131 ~~~~~~~~~~l~~~--l~~k~~L----lVLDd-v~~~---~~~~~l~~~l~~~~gs~IIiTTR~~~  186 (398)
                      .+.+++++..+.+.  |..++.+    ++||+ ++..   . .+.+...+.. .+..+|++|++..
T Consensus       236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~-~~~tviiVth~~~  299 (460)
T 2npi_A          236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK-LNVNIMLVLCSET  299 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH-TTCCEEEEECCSS
T ss_pred             hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH-hCCCEEEEEccCc
Confidence            56678888888888  9999999    99999 7732   2 2333333321 1344666666654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.34  E-value=0.00089  Score=59.34  Aligned_cols=119  Identities=19%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC------C---------
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG------T---------  125 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~------~---------  125 (398)
                      ..-.++.|.|++|+|||||+.+++..  ....=..++|++ ...  ...++...+ ..++....      .         
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~-~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~   94 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVA-LEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTA   94 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE-ccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchh
Confidence            34568999999999999999888654  222223466666 332  223332222 23332210      0         


Q ss_pred             -C--------C-CcCCCchHHHHHHHHHHHh-CCCcEEEecCCCCH---------HHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891          126 -T--------N-SFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFEDM---------EVCKHLSKVLPRGYGERLIITSRNE  185 (398)
Q Consensus       126 -~--------~-~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~---------~~~~~l~~~l~~~~gs~IIiTTR~~  185 (398)
                       .        . .....+.......+.+.+. .+.-++|+|.+...         .....+.... ...+..||+|++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~-~~~~~~vi~~~h~~  173 (247)
T 2dr3_A           95 GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL-AGTGCTSIFVSQVS  173 (247)
T ss_dssp             TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH-HHTTCEEEEEEECC
T ss_pred             hcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence             0        0 0001234444555555553 35779999998732         1222222222 23578899998865


Q ss_pred             H
Q 015891          186 K  186 (398)
Q Consensus       186 ~  186 (398)
                      .
T Consensus       174 ~  174 (247)
T 2dr3_A          174 V  174 (247)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.31  E-value=0.00059  Score=59.89  Aligned_cols=119  Identities=15%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccceEEEEecCCc----------ccHHHHHHHHHHHcC-CCCCCCCCc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVPRIWVCTMSGQ----------KTAESIVKRILKRLG-VDDGTTNSF  129 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~~v~~v~~~----------~~~~~~~~~il~~l~-~~~~~~~~~  129 (398)
                      .-.+++|+|++|+|||||++.+...  ... .+...+.+..-...          +.....+..+...-. .+...... 
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~--~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~-   91 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKT--QPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG-   91 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH--SCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc--CCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh-
Confidence            4579999999999999999999875  221 22222222211100          111122222222100 00000000 


Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      ...+..  ...+...+. +..++|||  -|......+...++  .+..|+++|++...+..
T Consensus        92 ~~yg~~--~~~v~~~l~-~G~illLD--LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A           92 NYYGTS--REAIEQVLA-TGVDVFLD--IDWQGAQQIRQKMP--HARSIFILPPSKIELDR  145 (219)
T ss_dssp             EEEEEE--HHHHHHHHT-TTCEEEEE--CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHH
T ss_pred             ccCCCC--HHHHHHHHh-cCCeEEEE--ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHH
Confidence            000000  123444444 35788999  45555555666665  47889999999766543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.29  E-value=0.00013  Score=73.17  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=36.0

Q ss_pred             CCcccchhhHHHHHHHHhc--cCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSN--RGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~--~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+++|.+...+.+.+.+..  .........++|+|++|+||||||+.++..
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3478888877777654432  012224668999999999999999999886

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.28  E-value=0.00075  Score=70.06  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCC--CCccccc--eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVP--RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD  138 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~--~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~  138 (398)
                      ..+++|+|++|+|||||++.+..-..  ....|-.  ...+..+.+          ++..++..+.-  ....+......
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~----------i~~~~~~~d~l--~~g~S~~~~e~  643 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG----------IYTRIGASDDL--AGGKSTFMVEM  643 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE----------EEEECCC--------CCSHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH----------hhccCCHHHHH--HhcccHHHHHH
Confidence            46899999999999999998853200  0111111  111110110          00111111100  00123333444


Q ss_pred             HHHHHHH--hCCCcEEEecCC---CCH-H--HH-HHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891          139 YVLQQQL--IGKRYLIVLDDF---EDM-E--VC-KHLSKVLPRGYGERLIITSRNEKLTTE  190 (398)
Q Consensus       139 ~~l~~~l--~~k~~LlVLDdv---~~~-~--~~-~~l~~~l~~~~gs~IIiTTR~~~v~~~  190 (398)
                      ..+...+  ..++-|++||++   .+. +  .. ..+...+.. .|+++|++||+.++...
T Consensus       644 ~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~  703 (765)
T 1ewq_A          644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL  703 (765)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTC
T ss_pred             HHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh
Confidence            5566666  778999999999   643 1  11 123233322 58899999999887653

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.24  E-value=0.00072  Score=62.29  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCcc--ccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHH-HHHH
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFL-DYVL  141 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-~~~l  141 (398)
                      ++.|.|++|+|||||+.+++..  ....  =..++|++ .....+..     .++.++..............++. ...+
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId-~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~  101 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYD-SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV  101 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEE-SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEe-ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence            7899999999999999998765  2222  13477887 65555542     37778876543222223455555 3333


Q ss_pred             HHH--H-hCCCcEEEecCCC
Q 015891          142 QQQ--L-IGKRYLIVLDDFE  158 (398)
Q Consensus       142 ~~~--l-~~k~~LlVLDdv~  158 (398)
                      ...  + ..++-+||+|-+.
T Consensus       102 ~~l~~i~~~~~~lvVIDSI~  121 (333)
T 3io5_A          102 NQLDAIERGEKVVVFIDSLG  121 (333)
T ss_dssp             HHHHTCCTTCCEEEEEECST
T ss_pred             HHHHHhhccCceEEEEeccc
Confidence            222  2 3468899999887

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.20  E-value=0.00052  Score=71.70  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ....+++|+|++|+|||||++.+..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHH
Confidence            3457999999999999999998853

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.18  E-value=0.00091  Score=61.82  Aligned_cols=110  Identities=19%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             hhhHHHHHHHHhccC----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC-cccHHHHHHHHHHH
Q 015891           44 ANEELHLQKLLSNRG----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-QKTAESIVKRILKR  118 (398)
Q Consensus        44 ~~~~~~l~~~L~~~~----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~  118 (398)
                      ..-.+.|.+.|....    ......+++|+|++|+||||++..++..  ....-..+.++. ... .......+..++..
T Consensus        81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~-~D~~r~~a~eqL~~~~~~  157 (306)
T 1vma_A           81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAA-ADTFRAAAIEQLKIWGER  157 (306)
T ss_dssp             HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEE-ECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEc-cccccHHHHHHHHHHHHH
Confidence            344555666664321    1235679999999999999999999765  222211233443 221 11222334455666


Q ss_pred             cCCCCCCCCCcCCCchHHH-HHHHHHHHhCCCcEEEecCCC
Q 015891          119 LGVDDGTTNSFEGQGLAFL-DYVLQQQLIGKRYLIVLDDFE  158 (398)
Q Consensus       119 l~~~~~~~~~~~~~~~~~~-~~~l~~~l~~k~~LlVLDdv~  158 (398)
                      +++......  ........ ...+.+.+..+.-++|+|.+-
T Consensus       158 ~gl~~~~~~--s~~~~~~v~~~al~~a~~~~~dvvIiDtpg  196 (306)
T 1vma_A          158 VGATVISHS--EGADPAAVAFDAVAHALARNKDVVIIDTAG  196 (306)
T ss_dssp             HTCEEECCS--TTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred             cCCcEEecC--CccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            655431111  11122222 235666677778899999886

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.15  E-value=0.0008  Score=63.57  Aligned_cols=104  Identities=17%  Similarity=0.112  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHh-ccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891           45 NEELHLQKLLS-NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDD  123 (398)
Q Consensus        45 ~~~~~l~~~L~-~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~  123 (398)
                      .-...|..+|. .  .-..-.++.|.|++|+||||||.+++..  ....-..++|++ .....+..     .+..++...
T Consensus        46 TG~~~LD~~Lg~G--Gl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid-~E~s~~~~-----~a~~~g~~~  115 (356)
T 1u94_A           46 TGSLSLDIALGAG--GLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDI  115 (356)
T ss_dssp             CSCHHHHHHTSSS--SEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCG
T ss_pred             CCCHHHHHHhccC--CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEe-CCCCccHH-----HHHHcCCCh
Confidence            33455666663 1  2235678999999999999999998765  222223577887 65554432     245555543


Q ss_pred             CCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891          124 GTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE  158 (398)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~  158 (398)
                      ...........++....+.... ..+.-+||+|.+.
T Consensus       116 ~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~  151 (356)
T 1u94_A          116 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA  151 (356)
T ss_dssp             GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred             hheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence            2211111233455555444443 3567799999987

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.15  E-value=0.0013  Score=61.24  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=61.5

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---------cc-----cceEEEEecCCcccHHHHH
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---------QF-----VPRIWVCTMSGQKTAESIV  112 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~~v~~v~~~~~~~~~~  112 (398)
                      ...|..+|..  .-..-.++.|+|++|+||||||.+++.......         ..     ..++|++ ....++...+.
T Consensus        84 ~~~LD~~l~G--Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~-~e~~~~~~~l~  160 (322)
T 2i1q_A           84 SSELDSVLGG--GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID-TEGTFRPERIM  160 (322)
T ss_dssp             CHHHHHHTTS--SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE-SSSCCCHHHHH
T ss_pred             ChhHHHhcCC--CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE-CCCCCCHHHHH
Confidence            3455555532  234567999999999999999999876421111         11     3577877 66555554444


Q ss_pred             HHHHHHcCCCCC----CCCCcCCCchH---HHHHHHHHHHhC--CCcEEEecCCCC
Q 015891          113 KRILKRLGVDDG----TTNSFEGQGLA---FLDYVLQQQLIG--KRYLIVLDDFED  159 (398)
Q Consensus       113 ~~il~~l~~~~~----~~~~~~~~~~~---~~~~~l~~~l~~--k~~LlVLDdv~~  159 (398)
                       .++..++....    ........+.+   .....+...+..  +.-+||+|.+..
T Consensus       161 -~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  215 (322)
T 2i1q_A          161 -QMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS  215 (322)
T ss_dssp             -HHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred             -HHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence             34455555321    00000112222   233445555543  567999999873

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.14  E-value=0.001  Score=62.76  Aligned_cols=24  Identities=42%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ...+++|+|++|+||||+++.++.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            467999999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.11  E-value=0.00025  Score=70.84  Aligned_cols=120  Identities=16%  Similarity=0.220  Sum_probs=62.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHH-cCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC----------------CC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIF-HKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD----------------DG  124 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~-~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~----------------~~  124 (398)
                      .-.+++|+|++|+|||||++.+. ..  ....-...+++. ....  ... .......++..                ..
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~G--l~~~~~g~i~v~-g~~~--~~~-~~~~~~~~g~~~q~~~~~~~l~~~~~~~~  111 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNG--IIEFDEPGVFVT-FEET--PQD-IIKNARSFGWDLAKLVDEGKLFILDASPD  111 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH--HHHHCCCEEEEE-SSSC--HHH-HHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH--HHhCCCCEEEEE-EeCC--HHH-HHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence            45789999999999999999952 22  111113466666 3221  111 11111111110                00


Q ss_pred             --CCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCCC--------HHHHHHHHhHcC--CCCCCEEEEEeCChHH
Q 015891          125 --TTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFED--------MEVCKHLSKVLP--RGYGERLIITSRNEKL  187 (398)
Q Consensus       125 --~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~--------~~~~~~l~~~l~--~~~gs~IIiTTR~~~v  187 (398)
                        .......-+...+...+...+ ..++-+++||.+..        ....+.+...+.  ...|..||+||++...
T Consensus       112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~  187 (525)
T 1tf7_A          112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE  187 (525)
T ss_dssp             SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence              000011122344455555555 46888999999963        222222322222  2248899999998754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.05  E-value=0.00044  Score=60.11  Aligned_cols=39  Identities=18%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+++|.+.+..  ......+++|+|++|+|||||++.+...
T Consensus         7 ~~~~~~~~~~~--~~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A            7 LCQGVLERLDP--RQPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             HHHHHHHHSCT--TCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44555555543  2356789999999999999999999765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.01  E-value=0.0012  Score=61.66  Aligned_cols=108  Identities=21%  Similarity=0.223  Sum_probs=60.8

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc----ccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ----FVPRIWVCTMSGQKTAESIVKRILKRLGVDD  123 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~  123 (398)
                      ..|..+|..  .-..-.++.|+|++|+||||||.+++........    -..++|++ ....++...+. .++..++...
T Consensus        94 ~~LD~~L~G--Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~-~e~~~~~~~l~-~~~~~~g~~~  169 (324)
T 2z43_A           94 QALDGLLAG--GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID-TEGTFRWERIE-NMAKALGLDI  169 (324)
T ss_dssp             HHHHHHTTT--SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCCHHHHH-HHHHHTTCCH
T ss_pred             hhHHHhcCC--CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCCHHHHH-HHHHHhCCCH
Confidence            445555532  2234569999999999999999999765212211    13477887 65555554443 3455565532


Q ss_pred             CC----CCCcCCCchH---HHHHHHHHHHh--CCCcEEEecCCCC
Q 015891          124 GT----TNSFEGQGLA---FLDYVLQQQLI--GKRYLIVLDDFED  159 (398)
Q Consensus       124 ~~----~~~~~~~~~~---~~~~~l~~~l~--~k~~LlVLDdv~~  159 (398)
                      ..    .......+.+   .....+...+.  .+.-+||+|.+..
T Consensus       170 ~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          170 DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence            10    0000111222   23344455554  4678999999884

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.00  E-value=0.0029  Score=58.96  Aligned_cols=26  Identities=31%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|+|++|+||||+++.++..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.99  E-value=0.00082  Score=58.04  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=33.9

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |++.++.|.+.+... ......+++|.|++|+||||+++.+...
T Consensus         3 ~~~~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A            3 LRDRIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             HHHHHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            566777788777652 2345689999999999999999999764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.91  E-value=0.0099  Score=54.56  Aligned_cols=86  Identities=13%  Similarity=0.049  Sum_probs=47.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccceEEEEecC-CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVPRIWVCTMS-GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY  139 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~  139 (398)
                      ...+++++|++|+||||++..++..  ... .=..+.++. .. ......+.+.......+.....     ......+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~-~D~~r~~a~eqL~~~~~~~gl~~~~-----~~~~~~l~~  175 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFIT-TDTYRIAAVEQLKTYAELLQAPLEV-----CYTKEEFQQ  175 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEE-CCCSSTTHHHHHHHHHTTTTCCCCB-----CSSHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEe-cCcccchHHHHHHHHHHhcCCCeEe-----cCCHHHHHH
Confidence            4679999999999999999998764  221 101234444 22 2233334444444444443211     122333444


Q ss_pred             HHHHHHhCCCcEEEecCC
Q 015891          140 VLQQQLIGKRYLIVLDDF  157 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv  157 (398)
                      .+.. + .+.-++|+|-.
T Consensus       176 al~~-~-~~~dlvIiDT~  191 (296)
T 2px0_A          176 AKEL-F-SEYDHVFVDTA  191 (296)
T ss_dssp             HHHH-G-GGSSEEEEECC
T ss_pred             HHHH-h-cCCCEEEEeCC
Confidence            4443 2 56789999954

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.88  E-value=0.0044  Score=58.21  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTAESIVKRILKRLGVDD  123 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~  123 (398)
                      ..|..+|..  .-..-.++.|+|++|+||||||.+++.......    .-..++|++ ....++...+ ..++..++...
T Consensus       109 ~~LD~~LgG--Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~-~E~~~~~~~l-~~~~~~~g~~~  184 (343)
T 1v5w_A          109 QEFDKLLGG--GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID-TENTFRPDRL-RDIADRFNVDH  184 (343)
T ss_dssp             HHHHHHTTS--SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE-SSSCCCHHHH-HHHHHHTTCCH
T ss_pred             hhHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCCHHHH-HHHHHHcCCCH
Confidence            445555532  334667999999999999999999876521211    123477887 6555455443 33445555432


Q ss_pred             C----CC---CCcCCCchHHHHHHHHHHHh---CCCcEEEecCCCC
Q 015891          124 G----TT---NSFEGQGLAFLDYVLQQQLI---GKRYLIVLDDFED  159 (398)
Q Consensus       124 ~----~~---~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~  159 (398)
                      .    ..   ..............+...+.   .+.-+||+|.+..
T Consensus       185 ~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~  230 (343)
T 1v5w_A          185 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA  230 (343)
T ss_dssp             HHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred             HHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence            1    00   00111222223334444444   4567999999873

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.85  E-value=0.0022  Score=57.64  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-+..+|..  ..+....+.|+|++|+|||++|.++++.
T Consensus        90 ~~~l~~~l~~--~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           90 ASVFLGWATK--KFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHHTT--CSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            3446666653  2244567999999999999999999885

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.84  E-value=0.011  Score=55.33  Aligned_cols=155  Identities=10%  Similarity=-0.031  Sum_probs=94.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      -..++.++|+.|.||++.+..+.+.  .. ..|.....+. +....+..++...+-                        
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~~~~------------------------   69 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQV--AAAQGFEEHHTFS-IDPNTDWNAIFSLCQ------------------------   69 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHH--HHHHTCCEEEEEE-CCTTCCHHHHHHHHH------------------------
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHH--HHhCCCCeeEEEE-ecCCCCHHHHHHHhc------------------------
Confidence            4678999999999999999988765  21 1232211222 222223222221111                        


Q ss_pred             HHHHHhCCCcEEEecCCCC---HHHHHHHHhHcCC-CCCCEEEEEeCC-------hHHHHHhcCCCceEEcCCCCChhHH
Q 015891          141 LQQQLIGKRYLIVLDDFED---MEVCKHLSKVLPR-GYGERLIITSRN-------EKLTTEMVGEENLHQLQPLSDQESC  209 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~~-~~gs~IIiTTR~-------~~v~~~~~~~~~~~~l~~L~~~e~~  209 (398)
                       ..-+.+++-++|+|+++.   .+..+.|...+.. .+++.+|+++.+       ..+...+......++..+++. ++.
T Consensus        70 -~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~-~~l  147 (343)
T 1jr3_D           70 -AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ-AQL  147 (343)
T ss_dssp             -HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT-THH
T ss_pred             -CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH-HHH
Confidence             112235678999999865   2455566666652 346666666543       356666656678899999998 556


Q ss_pred             HHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          210 WLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       210 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .....+.+...+...++   +.+..+++.++|...++..
T Consensus       148 ~~~l~~~~~~~g~~i~~---~a~~~l~~~~~gdl~~~~~  183 (343)
T 1jr3_D          148 PRWVAARAKQLNLELDD---AANQVLCYCYEGNLLALAQ  183 (343)
T ss_dssp             HHHHHHHHHHTTCEECH---HHHHHHHHSSTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCH---HHHHHHHHHhchHHHHHHH
Confidence            66666655444444333   3667788889998877664

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.83  E-value=0.0035  Score=70.91  Aligned_cols=101  Identities=18%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             HHHHHHHh-ccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCC
Q 015891           48 LHLQKLLS-NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT  126 (398)
Q Consensus        48 ~~l~~~L~-~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~  126 (398)
                      ..|..+|. -  .-...+.+.|+|++|+|||+||.++...  ....=..+.|++ +....+...     ++.+|.+....
T Consensus      1413 ~~LD~lLG~G--Gi~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~-~e~~~~~l~-----a~~~G~dl~~l 1482 (2050)
T 3cmu_A         1413 LSLDIALGAG--GLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPIY-----ARKLGVDIDNL 1482 (2050)
T ss_dssp             HHHHHHHSSS--SEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEC-TTSCCCHHH-----HHHTTCCTTTC
T ss_pred             HHHHHhcCCC--CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEE-cccccCHHH-----HHHcCCCchhc
Confidence            34666664 1  2346789999999999999999999765  222212366776 666555444     45566443322


Q ss_pred             CCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891          127 NSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE  158 (398)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~  158 (398)
                      ........++....+.+.. ..++.+||+|++.
T Consensus      1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred             eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence            2111233445455555444 3578899999995

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.81  E-value=0.004  Score=57.40  Aligned_cols=24  Identities=46%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ...+++|+|++|+|||||++.++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999999964

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.80  E-value=0.0053  Score=60.11  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+..+...+..     ..+.+.|.|++|+||||++..+...
T Consensus        30 Q~~av~~~~~~i~~-----~~~~~li~G~aGTGKT~ll~~~~~~   68 (459)
T 3upu_A           30 QKNAFNIVMKAIKE-----KKHHVTINGPAGTGATTLTKFIIEA   68 (459)
T ss_dssp             HHHHHHHHHHHHHS-----SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-----CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            33444445555543     1238999999999999999988765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.78  E-value=0.003  Score=58.00  Aligned_cols=91  Identities=21%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHH-HH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-KTAESIVKRILKRLGVDDGTTNSFEGQGLAFL-DY  139 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-~~  139 (398)
                      ...+++++|++|+||||++..++..  ....-..+.++. .... ......+..+....++......  .......+ ..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~-~d~~~~~~~~ql~~~~~~~~l~~~~~~--~~~~p~~l~~~  171 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVA-ADTQRPAAREQLRLLGEKVGVPVLEVM--DGESPESIRRR  171 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEE-CCSSCHHHHHHHHHHHHHHTCCEEECC--TTCCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEec-CCcccHhHHHHHHHhcccCCeEEEEcC--CCCCHHHHHHH
Confidence            4679999999999999999999765  222212234444 3222 1222223344555554321100  01122222 34


Q ss_pred             HHHHHHhCCCcEEEecCC
Q 015891          140 VLQQQLIGKRYLIVLDDF  157 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv  157 (398)
                      .+......+.-++|+|.+
T Consensus       172 ~l~~~~~~~~D~viiDtp  189 (295)
T 1ls1_A          172 VEEKARLEARDLILVDTA  189 (295)
T ss_dssp             HHHHHHHHTCCEEEEECC
T ss_pred             HHHHHHhCCCCEEEEeCC
Confidence            455554567789999998

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.77  E-value=0.0014  Score=60.90  Aligned_cols=46  Identities=15%  Similarity=0.088  Sum_probs=32.2

Q ss_pred             ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|-...+..+...+..........+++|.|++|+|||||++.+...
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3444445555555544323456779999999999999999998654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.71  E-value=0.0009  Score=56.94  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|++|+|||||++.+...
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999886

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.69  E-value=0.00011  Score=62.78  Aligned_cols=37  Identities=11%  Similarity=0.161  Sum_probs=25.8

Q ss_pred             CCCcEEEecCCCC--HHHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891          147 GKRYLIVLDDFED--MEVCKHLSKVLPRGYGERLIITSRNE  185 (398)
Q Consensus       147 ~k~~LlVLDdv~~--~~~~~~l~~~l~~~~gs~IIiTTR~~  185 (398)
                      .+..+|++|++..  .++.+.+....+.  +..|++|.++.
T Consensus        75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~  113 (184)
T 2orw_A           75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDL  113 (184)
T ss_dssp             TTEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred             CCCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeecc
Confidence            3456999999983  4666666555433  77899988754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.67  E-value=0.011  Score=57.25  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|.++|++|+||||++..++..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~  123 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARY  123 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHH
Confidence            4789999999999999999888754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.66  E-value=0.00094  Score=61.39  Aligned_cols=49  Identities=27%  Similarity=0.388  Sum_probs=38.2

Q ss_pred             CCcccchhhHHHHHHHHhcc--C--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNR--G--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~--~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++|++..++.+...+...  .        .......+.|+|++|+|||++|+.+++.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999998877530  0        0123457889999999999999999886

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.63  E-value=0.0057  Score=59.09  Aligned_cols=25  Identities=36%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++++|++|+||||++..++..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~  120 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYF  120 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999988754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.62  E-value=0.0014  Score=62.08  Aligned_cols=48  Identities=25%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CcccchhhHHHHHHHHhc-----------cCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSN-----------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~-----------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++|.+..++.+...+..           .........+.|+|++|+|||++|+.+++.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            469999999998888731           001124567899999999999999999987

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.57  E-value=0.0074  Score=56.04  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|+|++|+||||++..++..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35679999999999999999998765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.55  E-value=0.0011  Score=56.06  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++|+|++|+|||||++.+...
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            468999999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.54  E-value=0.0013  Score=56.51  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++|+|++|+|||||++.+...
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            468999999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.47  E-value=0.0013  Score=55.29  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|.|.|++|+||||+++.+...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999886

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.46  E-value=0.0031  Score=57.81  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=24.2

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ......+|+|.|++|+|||||++.+...
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456789999999999999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.46  E-value=0.0015  Score=56.56  Aligned_cols=25  Identities=36%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|.|++|+|||||++.+...
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999774

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.45  E-value=0.0019  Score=53.47  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-.+++|.|++|+|||||++.++.-
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999999999999999775

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.43  E-value=0.0019  Score=55.64  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|.|++|+|||||++.+...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.42  E-value=0.0017  Score=56.28  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-.+++|+|++|+|||||++.+..-
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.41  E-value=0.0018  Score=55.02  Aligned_cols=22  Identities=41%  Similarity=0.705  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+++|+|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999976

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.41  E-value=0.0012  Score=55.07  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|+|+|++|+||||+++.+...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.39  E-value=0.0035  Score=58.77  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |..+...+.+...+......+....+.|+|++|+||||+++.++..
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            4445566666666654223455677999999999999999999775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.39  E-value=0.0017  Score=55.97  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=22.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|++|+|||||++.+...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.39  E-value=0.0017  Score=54.03  Aligned_cols=20  Identities=25%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCChHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRI   83 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v   83 (398)
                      .+|+|.|++|+||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.35  E-value=0.0024  Score=53.51  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|++|+||||+++.+...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.34  E-value=0.0031  Score=57.68  Aligned_cols=27  Identities=33%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ......+.|.|++|+||||+++.+...
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.33  E-value=0.0018  Score=53.84  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|+|.|++|+||||+++.+...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.32  E-value=0.0021  Score=55.81  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=22.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|++|+|||||++.+...
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            4568999999999999999999886

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.32  E-value=0.0026  Score=62.84  Aligned_cols=43  Identities=9%  Similarity=0.059  Sum_probs=37.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|++..++.+...+..      ..-+.|+|++|+|||+||+.+++.
T Consensus        22 ~~ivGq~~~i~~l~~al~~------~~~VLL~GpPGtGKT~LAraLa~~   64 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALS------GESVFLLGPPGIAKSLIARRLKFA   64 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHH------TCEEEEECCSSSSHHHHHHHGGGG
T ss_pred             hhhHHHHHHHHHHHHHHhc------CCeeEeecCchHHHHHHHHHHHHH
Confidence            5689999999988887765      247899999999999999999986

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.32  E-value=0.0016  Score=56.07  Aligned_cols=24  Identities=33%  Similarity=0.654  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.++|+|++|+|||||++.+...
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            357899999999999999999764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.32  E-value=0.016  Score=53.26  Aligned_cols=91  Identities=19%  Similarity=0.121  Sum_probs=49.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      ..+++++|++|+||||++..++..  ....-..+.++. .. ........+..+....+..-....  ...+........
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~-~D~~r~~a~~ql~~~~~~~~v~v~~~~--~~~~p~~~~~~~  172 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVG-ADVYRPAALEQLQQLGQQIGVPVYGEP--GEKDVVGIAKRG  172 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEE-CCCSSSHHHHHHHHHHHHHTCCEECCT--TCCCHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEe-cCCCCHHHHHHHHHHhccCCeEEEecC--CCCCHHHHHHHH
Confidence            679999999999999999998765  222212244444 32 223333344455555554321110  112223332223


Q ss_pred             HHHHh-CCCcEEEecCCC
Q 015891          142 QQQLI-GKRYLIVLDDFE  158 (398)
Q Consensus       142 ~~~l~-~k~~LlVLDdv~  158 (398)
                      ...+. ..--++|+|-+-
T Consensus       173 l~~~~~~~~D~ViIDTpg  190 (297)
T 1j8m_F          173 VEKFLSEKMEIIIVDTAG  190 (297)
T ss_dssp             HHHHHHTTCSEEEEECCC
T ss_pred             HHHHHhCCCCEEEEeCCC
Confidence            33333 455699999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.30  E-value=0.0021  Score=53.83  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999987

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.27  E-value=0.0021  Score=55.25  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|++|+||||+++.+...
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.26  E-value=0.0023  Score=55.06  Aligned_cols=24  Identities=42%  Similarity=0.524  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++|+|++|+||||+++.+...
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.21  E-value=0.0054  Score=56.65  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|.|++|+|||||++.+...
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999774

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.20  E-value=0.0029  Score=56.34  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=22.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|.|++|+|||||++.+...
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.19  E-value=0.0076  Score=56.30  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=43.1

Q ss_pred             cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHH
Q 015891           42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKR  118 (398)
Q Consensus        42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~  118 (398)
                      |...-+..|..++.   +-..-.++.|.|.+|+||||||..++..  ....=..++|++   -..+..++...++..
T Consensus        28 gi~TG~~~LD~~~g---Gl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fS---lEms~~ql~~Rlls~   96 (338)
T 4a1f_A           28 GIPTGFVQLDNYTS---GFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFS---LEMSAEQLALRALSD   96 (338)
T ss_dssp             SBCCSCHHHHHHHC---SBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEE---SSSCHHHHHHHHHHH
T ss_pred             cccCCChHHHHHhc---CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe---CCCCHHHHHHHHHHH
Confidence            33344455555553   2345578999999999999999999776  222112355655   345556666666554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.17  E-value=0.0022  Score=56.07  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-.+++|+|++|+|||||++.+...
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.16  E-value=0.0032  Score=58.27  Aligned_cols=27  Identities=30%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....+++|.|++|+|||||++.+..-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            356789999999999999999999763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.15  E-value=0.0028  Score=56.47  Aligned_cols=24  Identities=38%  Similarity=0.643  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++|+|++|+|||||++.+...
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999843

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.15  E-value=0.0018  Score=55.23  Aligned_cols=23  Identities=39%  Similarity=0.739  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|.|+||+|+|||||++.+...
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.14  E-value=0.028  Score=55.01  Aligned_cols=26  Identities=38%  Similarity=0.442  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|+|++|+|||||++.++..
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHH
Confidence            34679999999999999999999765

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.13  E-value=0.014  Score=58.64  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+++.|.|++|+||||++..+...
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~  227 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADL  227 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            478899999999999999998764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.13  E-value=0.012  Score=54.48  Aligned_cols=68  Identities=9%  Similarity=0.061  Sum_probs=43.3

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHH
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKR  118 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~  118 (398)
                      ...-+..|..++ .  +-..-.++.|.|.+|+||||||..++..  ....-..++|++ ..  .+..++...++..
T Consensus        51 i~TG~~~LD~~l-g--Gl~~G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~s-lE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           51 VPSGFTELDRMT-Y--GYKRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS-LE--MGKKENIKRLIVT  118 (315)
T ss_dssp             BCCSCHHHHHHH-S--SBCTTCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEE-SS--SCHHHHHHHHHHH
T ss_pred             ccCChHHHHhhc-C--CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEE-CC--CCHHHHHHHHHHH
Confidence            333444555555 2  3355678999999999999999998765  111114566766 33  5566666666654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.11  E-value=0.0033  Score=54.18  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+++|.|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.11  E-value=0.0041  Score=53.68  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=23.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|+|++|+||||+++.+...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999999876

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.10  E-value=0.013  Score=50.08  Aligned_cols=135  Identities=19%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC--cccHHHHHHHHHHHcCCCC--CC-CCCcCC-----
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG--QKTAESIVKRILKRLGVDD--GT-TNSFEG-----  131 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~--~~~~~~~~~~il~~l~~~~--~~-~~~~~~-----  131 (398)
                      ....|.|++.+|.||||+|-.+.-+  ...+=..++++.++..  ......++..    ++...  .. ......     
T Consensus        27 ~~g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~  100 (196)
T 1g5t_A           27 ERGIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREA  100 (196)
T ss_dssp             CCCCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHH
Confidence            3467778888889999999888654  1111112444442322  2223333333    22100  00 000000     


Q ss_pred             --CchHHHHHHHHHHHhC-CCcEEEecCCCCH-----HHHHHHHhHcC-CCCCCEEEEEeCChH--HHHHhcCCCceEEc
Q 015891          132 --QGLAFLDYVLQQQLIG-KRYLIVLDDFEDM-----EVCKHLSKVLP-RGYGERLIITSRNEK--LTTEMVGEENLHQL  200 (398)
Q Consensus       132 --~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~-----~~~~~l~~~l~-~~~gs~IIiTTR~~~--v~~~~~~~~~~~~l  200 (398)
                        ...........+.+.+ +--|||||++...     -..+.+...+. .-....||+|+|+..  +..   -.+.+-++
T Consensus       101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e---~AD~VTem  177 (196)
T 1g5t_A          101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD---LADTVSEL  177 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH---HCSEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH---hCcceeee
Confidence              1112223334444444 4569999998521     11112222332 334678999999853  222   23556666


Q ss_pred             CCCCC
Q 015891          201 QPLSD  205 (398)
Q Consensus       201 ~~L~~  205 (398)
                      .+...
T Consensus       178 ~~vkH  182 (196)
T 1g5t_A          178 RPVKH  182 (196)
T ss_dssp             CCSCC
T ss_pred             cceeC
Confidence            65554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.08  E-value=0.0029  Score=53.42  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.|.|+|++|+||||+++.+...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.07  E-value=0.0022  Score=55.11  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+|+|.|++|+||||+|+.+...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999775

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.05  E-value=0.0043  Score=52.50  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++.|.|++|+||||+++.+...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.04  E-value=0.004  Score=52.82  Aligned_cols=25  Identities=36%  Similarity=0.305  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|.|.|++|+||||+++.+...
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.02  E-value=0.028  Score=48.96  Aligned_cols=95  Identities=19%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-------ecCCcccHHHHHHHHHHHcCCCCCCCCCcCC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-------TMSGQKTAESIVKRILKRLGVDDGTTNSFEG  131 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-------~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~  131 (398)
                      .-.+.++|.|.|++|+||||.|+.+...  .  .|   ..++       .+............++..=.+          
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~--~--g~---~hIstGdllR~~i~~~t~lg~~~~~~~~~G~l----------   87 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK--F--HF---NHLSSGDLLRAEVQSGSPKGKELKAMMERGEL----------   87 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH--H--CC---EEECHHHHHHHHHTTCCHHHHHHHHHHHHTCC----------
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH--H--CC---ceEcHHHHHHHHHHcCCchHHHHHHHHhcCCC----------
Confidence            3356889999999999999999999876  1  11   1221       011222333344444433111          


Q ss_pred             CchHHHHHHHHHHHh---CCCcEEEecCCC-CHHHHHHHHhHc
Q 015891          132 QGLAFLDYVLQQQLI---GKRYLIVLDDFE-DMEVCKHLSKVL  170 (398)
Q Consensus       132 ~~~~~~~~~l~~~l~---~k~~LlVLDdv~-~~~~~~~l~~~l  170 (398)
                      -..+-....+...+.   ....-+|||..- +..+.+.|...+
T Consensus        88 Vpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~  130 (217)
T 3umf_A           88 VPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEV  130 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhC
Confidence            112223344444442   244568899964 677777665544

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.01  E-value=0.0053  Score=54.62  Aligned_cols=41  Identities=15%  Similarity=0.082  Sum_probs=28.9

Q ss_pred             hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+.++...+..  .......|+|.|++|+||||+|+.+...
T Consensus        12 ~~~~~~~~~~~~~--~~~~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           12 IDLLNELKRRYAC--LSKPDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             HHHHHHHHHHHHH--HTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3444444444332  2235678999999999999999999765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.00  E-value=0.0033  Score=54.99  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+|+|+|++|+||||+++.+...
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.00  E-value=0.0032  Score=54.14  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..|+|.|++|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999987

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.96  E-value=0.003  Score=54.49  Aligned_cols=25  Identities=32%  Similarity=0.602  Sum_probs=22.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|++|+|||||++.+...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.96  E-value=0.0037  Score=52.91  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|.|.|++|+||||+++.+...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.95  E-value=0.0039  Score=53.57  Aligned_cols=25  Identities=16%  Similarity=0.507  Sum_probs=22.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++++|+|++|+|||||++.+...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4678999999999999999999865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.95  E-value=0.0044  Score=53.05  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|.|+.|+||||+++.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            45689999999999999999999874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.94  E-value=0.029  Score=52.99  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~  142 (398)
                      -..++|+|++|+|||||++.+..-  +.. -...+.+.... ......    .-..++.-..................++
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~--~~~-~~g~I~ie~~~-e~~~~~----~~~~v~~v~~q~~~~~~~~~~t~~~~i~  246 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQE--IPF-DQRLITIEDVP-ELFLPD----HPNHVHLFYPSEAKEEENAPVTAATLLR  246 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTT--SCT-TSCEEEEESSS-CCCCTT----CSSEEEEECC----------CCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc--CCC-CceEEEECCcc-ccCccc----cCCEEEEeecCccccccccccCHHHHHH
Confidence            458999999999999999999876  222 23445544221 110000    0000000000000000001123456677


Q ss_pred             HHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891          143 QQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEK  186 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~  186 (398)
                      ..+...+-.+++|++...+..+.+.. ++.+ ...++.|+|...
T Consensus       247 ~~l~~~pd~~l~~e~r~~~~~~~l~~-l~~g-~~~~l~t~H~~~  288 (361)
T 2gza_A          247 SCLRMKPTRILLAELRGGEAYDFINV-AASG-HGGSITSCHAGS  288 (361)
T ss_dssp             HHTTSCCSEEEESCCCSTHHHHHHHH-HHTT-CCSCEEEEECSS
T ss_pred             HHHhcCCCEEEEcCchHHHHHHHHHH-HhcC-CCeEEEEECCCC
Confidence            77888888999999997666665543 3333 223566766554

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.94  E-value=0.0059  Score=52.58  Aligned_cols=41  Identities=20%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-+..+..++..   -++...+.|+|++|+||||+|.++++.
T Consensus        41 ~~~f~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           41 FITFLGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             HHHHHHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence            33446667777753   234457999999999999999999876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.94  E-value=0.0039  Score=55.90  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+++|.|++|+||||||+.++..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            47899999999999999999875

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.92  E-value=0.032  Score=49.03  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      .+.+.|.|+.|+||||++..+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            3689999999999998766553

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.91  E-value=0.0027  Score=55.96  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=16.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHH-cC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIF-HK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~-~~   86 (398)
                      -.+++|+|++|+|||||++.+. ..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999998 54

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.90  E-value=0.0048  Score=52.22  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|++|+||||+++.+...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999875

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.90  E-value=0.017  Score=65.50  Aligned_cols=110  Identities=18%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHc
Q 015891           40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRL  119 (398)
Q Consensus        40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l  119 (398)
                      ..+...-...|..+|.. +.-..-.++.|.|++|+||||||.+++..  ....=..++|++ .....+..     .++.+
T Consensus       361 ~~~I~TG~~~LD~lLG~-GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis-~E~s~~~~-----~a~~l  431 (2050)
T 3cmu_A          361 VETISTGSLSLDIALGA-GGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKL  431 (2050)
T ss_dssp             CCEECCSCHHHHHHHSS-SSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEC-TTSCCCHH-----HHHHT
T ss_pred             CceeeCCCHHHHHHhcc-CCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEE-cCCCHHHH-----HHHHc
Confidence            34444555667777741 02345779999999999999999999776  222223577877 65555532     25667


Q ss_pred             CCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891          120 GVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE  158 (398)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~  158 (398)
                      +.+............++....+.+.. ..+.-+||+|.+.
T Consensus       432 Gvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~  471 (2050)
T 3cmu_A          432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA  471 (2050)
T ss_dssp             TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred             CCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence            76543332222345566666665544 3567899999987

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.90  E-value=0.0039  Score=52.78  Aligned_cols=23  Identities=39%  Similarity=0.559  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|.|.|++|+||||+++.+...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999775

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.90  E-value=0.017  Score=50.00  Aligned_cols=87  Identities=14%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC--------CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS--------GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF  136 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~--------~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~  136 (398)
                      +|.|.|++|+||+|.|+.+...      |. ...++ .+        .........+.++..=.+          -.-+-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is-tGdllR~~i~~~t~lg~~~~~~~~~G~l----------vpd~i   63 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS-TGDILREAVQKGTPLGKKAKEYMERGEL----------VPDDL   63 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE-HHHHHHHHHHHTCHHHHHHHHHHHHTCC----------CCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc-HHHHHHHHHHhcChhhhhHHHHHhcCCc----------CCHHH
Confidence            5789999999999999999876      11 12222 11        111222233333332111          11233


Q ss_pred             HHHHHHHHHhCCCcEEEecCCC-CHHHHHHHHhHc
Q 015891          137 LDYVLQQQLIGKRYLIVLDDFE-DMEVCKHLSKVL  170 (398)
Q Consensus       137 ~~~~l~~~l~~k~~LlVLDdv~-~~~~~~~l~~~l  170 (398)
                      ....+...+..... +|||..= +..+.+.|...+
T Consensus        64 v~~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~l   97 (206)
T 3sr0_A           64 IIALIEEVFPKHGN-VIFDGFPRTVKQAEALDEML   97 (206)
T ss_dssp             HHHHHHHHCCSSSC-EEEESCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCc-eEecCCchhHHHHHHHHhhH
Confidence            45566677765544 7889864 677777665554

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.89  E-value=0.0044  Score=52.55  Aligned_cols=24  Identities=42%  Similarity=0.567  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+|+|.|++|+||||+|+.+...
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.87  E-value=0.0055  Score=52.59  Aligned_cols=26  Identities=38%  Similarity=0.657  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|.|+.|+||||+++.+...
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.86  E-value=0.005  Score=51.95  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|.|++|+||||+++.+...
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.85  E-value=0.0038  Score=53.36  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +++|+|++|+|||||++.++..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.82  E-value=0.0038  Score=52.50  Aligned_cols=25  Identities=40%  Similarity=0.530  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|.|+|++|+||||+++.+...
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.80  E-value=0.0046  Score=51.32  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|.|+.|+||||+++.+...
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.79  E-value=0.0046  Score=52.88  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|.|+.|+||||+++.+...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.78  E-value=0.0044  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|.|.|++|+||||+++.+...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.75  E-value=0.0061  Score=52.28  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|.|++|+||||+|+.+...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999875

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.75  E-value=0.0037  Score=53.48  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      .-.+..++|+.|+||||.+..+.++.. ...+...++-. .-..   ..-...+.+.++....... .  ....    .+
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~-~~d~---r~~~~~i~s~~g~~~~a~~-~--~~~~----~i   74 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKP-EIDN---RYSKEDVVSHMGEKEQAVA-I--KNSR----EI   74 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEE-C----------CEEECTTSCEEECEE-E--SSST----HH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEe-ccCc---cchHHHHHhhcCCceeeEe-e--CCHH----HH
Confidence            347899999999999998888866521 11222222221 1100   0001122223332211110 0  1111    23


Q ss_pred             HHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891          142 QQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITSRNE  185 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTTR~~  185 (398)
                      ...+.++--+|++|++.  +.++++.+....+  .+..||+|.++.
T Consensus        75 ~~~~~~~~dvViIDEaqfl~~~~v~~l~~l~~--~~~~Vi~~Gl~~  118 (191)
T 1xx6_A           75 LKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAE--SGRRVICAGLDM  118 (191)
T ss_dssp             HHHCCTTCSEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEEECSB
T ss_pred             HHHHhccCCEEEEECCCCCCHHHHHHHHHHHh--CCCEEEEEeccc
Confidence            33333334699999987  4566666655443  277899998865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.74  E-value=0.0051  Score=52.29  Aligned_cols=25  Identities=44%  Similarity=0.635  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|+|.|++|+||||+++.+...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.73  E-value=0.0056  Score=54.76  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=22.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|+|.|++|+||||+++.+...
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999999865

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.72  E-value=0.016  Score=64.92  Aligned_cols=103  Identities=18%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCC
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT  126 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~  126 (398)
                      ...|..+|.. +.-..-+++.|.|++|+||||||.+++..  ....=..++|++ .....+..     .++.++.+....
T Consensus       368 i~~LD~lLg~-GGl~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis-~E~s~~~~-----~a~~lGvd~~~L  438 (1706)
T 3cmw_A          368 SLSLDIALGA-GGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDIDNL  438 (1706)
T ss_dssp             CHHHHHHTSS-SSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEC-TTSCCCHH-----HHHHTTCCGGGC
T ss_pred             cHHHHHHhcc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEE-ccCchHHH-----HHHHcCCCHHHe
Confidence            4455555530 02245679999999999999999999765  222223577887 66555542     256676654332


Q ss_pred             CCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891          127 NSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE  158 (398)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~  158 (398)
                      ........++....+.... ..+.-+||+|-+.
T Consensus       439 ~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~  471 (1706)
T 3cmw_A          439 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA  471 (1706)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred             EEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence            2222344566666555544 3467899999987

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.71  E-value=0.0065  Score=54.33  Aligned_cols=27  Identities=33%  Similarity=0.291  Sum_probs=23.7

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ......+.|.|++|+||||+|+.+...
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999999876

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.69  E-value=0.0063  Score=51.12  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|.|+.|+||||+++.+...
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.69  E-value=0.0064  Score=55.97  Aligned_cols=24  Identities=42%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ...+++|+|++|+||||+++.++.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457999999999999999999864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.68  E-value=0.012  Score=59.77  Aligned_cols=43  Identities=21%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++|.+..++.+...+..      ...+.|+|++|+||||||+.++..
T Consensus        41 ~~i~G~~~~l~~l~~~i~~------g~~vll~Gp~GtGKTtlar~ia~~   83 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQ------KRHVLLIGEPGTGKSMLGQAMAEL   83 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHT------TCCEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEECchhhHhhccccccC------CCEEEEEeCCCCCHHHHHHHHhcc
Confidence            5689999999988888865      258999999999999999999886

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.67  E-value=0.0073  Score=51.07  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|+|.|++|+||||+++.+...
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999875

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=95.66  E-value=0.2  Score=47.63  Aligned_cols=47  Identities=13%  Similarity=0.077  Sum_probs=35.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|....+.++.+.+...  ......|.|.|.+|+|||++|+.+...
T Consensus       137 ~~~ig~s~~m~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lAr~ih~~  183 (387)
T 1ny5_A          137 EEYVFESPKMKEILEKIKKI--SCAECPVLITGESGVGKEVVARLIHKL  183 (387)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH--TTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             hhhhhccHHhhHHHHHHHHh--cCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence            35778777788877776652  222344699999999999999999765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.65  E-value=0.0065  Score=52.30  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|.|++|+||||+++.+...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            368999999999999999999876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.62  E-value=0.0087  Score=57.94  Aligned_cols=49  Identities=27%  Similarity=0.388  Sum_probs=37.3

Q ss_pred             CCcccchhhHHHHHHHHhcc----------CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNR----------GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~----------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.++..+.|...+...          ......+-+.++|++|+||||+|+.++..
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~   73 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL   73 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999888887776320          00113466999999999999999999887

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.61  E-value=0.044  Score=53.01  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           45 NEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        45 ~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-.++|.++|....     .....++|.++|.+|+||||++..++..
T Consensus        77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~  123 (433)
T 2xxa_A           77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF  123 (433)
T ss_dssp             HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34455666665311     1135689999999999999999998765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.60  E-value=0.0078  Score=51.48  Aligned_cols=26  Identities=38%  Similarity=0.704  Sum_probs=23.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|.|+.|+||||+++.+...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999999999774

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.59  E-value=0.0082  Score=58.15  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|+|+|++|+||||++..++..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999999765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.59  E-value=0.0058  Score=52.09  Aligned_cols=24  Identities=33%  Similarity=0.657  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+|+|.|++|+||||+++.+...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.58  E-value=0.0069  Score=54.10  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|.|+.|+||||+|+.+...
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.57  E-value=0.0051  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|+|.|++|+||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999875

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.57  E-value=0.0058  Score=55.32  Aligned_cols=21  Identities=48%  Similarity=0.798  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 015891           65 AIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .++|+|++|+|||||++.++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999965

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.56  E-value=0.0071  Score=54.36  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|.|++|+||||+|+.+...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.55  E-value=0.013  Score=51.10  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++..+.+...+..    .....|+|+|.+|+|||||+..+...
T Consensus        23 ~~~a~~~r~~~~~----~~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           23 KRLADKNRKLLNK----HGVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             HHHHHHHHHHHHH----TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4445556666543    45788999999999999999999876

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.55  E-value=0.0097  Score=51.58  Aligned_cols=111  Identities=11%  Similarity=0.080  Sum_probs=53.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL  141 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l  141 (398)
                      .-.+..++|+-|+||||.+...+.+  ....-..++.+. ....  ...-...+.+.++........   ....    .+
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k-~~~d--~R~ge~~i~s~~g~~~~a~~~---~~~~----~~   94 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFK-PCID--NRYSEEDVVSHNGLKVKAVPV---SASK----DI   94 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEE-CC-------------------CCEEEC---SSGG----GG
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE-eccC--CcchHHHHHhhcCCeeEEeec---CCHH----HH
Confidence            4568889999999999988887665  222211222222 1111  111122345555544321111   1111    11


Q ss_pred             HHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891          142 QQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITSRNEK  186 (398)
Q Consensus       142 ~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTTR~~~  186 (398)
                      ...+.++--+|++|++.  +.++++.+....+  .+..||+|-++.+
T Consensus        95 ~~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~--~~~~Vi~~Gl~~D  139 (214)
T 2j9r_A           95 FKHITEEMDVIAIDEVQFFDGDIVEVVQVLAN--RGYRVIVAGLDQD  139 (214)
T ss_dssp             GGGCCSSCCEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEECSBC
T ss_pred             HHHHhcCCCEEEEECcccCCHHHHHHHHHHhh--CCCEEEEEecccc
Confidence            12222334599999998  4556665554433  3778999999653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.54  E-value=0.0067  Score=52.87  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|.|++|+||||+++.+...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.53  E-value=0.0068  Score=58.26  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ...+++|+|++|+|||||++.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            456999999999999999999987

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.52  E-value=0.007  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|.|++|+||||+++.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.52  E-value=0.0064  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|+|.|++|+||||+|+.+...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.51  E-value=0.0045  Score=51.95  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+++|+|++|+|||||++.+..-
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.50  E-value=0.0072  Score=50.50  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|.|+.|+|||||+..+...
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.49  E-value=0.0047  Score=51.93  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=17.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+|.|.|++|+||||+|+.+...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.48  E-value=0.037  Score=53.31  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++++|++|+||||++..++..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999765

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.47  E-value=0.082  Score=52.18  Aligned_cols=50  Identities=12%  Similarity=0.022  Sum_probs=32.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-ccceEEEEecCCcccHHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      .-.++.|.|.+|+||||||.+++..  .... =..++|++ ..  .+..++...++
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s-~E--~s~~~l~~r~~  291 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAM-LE--ESVEETAEDLI  291 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEE-SS--SCHHHHHHHHH
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEe-cc--CCHHHHHHHHH
Confidence            4568999999999999999999776  2222 12466766 43  33444544443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.47  E-value=0.0074  Score=51.12  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|+|.|+.|+||||+++.+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.46  E-value=0.011  Score=51.30  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+...+.+...+..    .....++|+|.+|+|||||+..+...
T Consensus        13 ~~~~~~~~~~~~~~~----~~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           13 ENKRLAEKNREALRE----SGTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             HHHHHHHHHHHHHHH----HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHhhcc----cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            444556666666643    46789999999999999999999775

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.43  E-value=0.0074  Score=55.53  Aligned_cols=26  Identities=23%  Similarity=0.552  Sum_probs=22.6

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      -..-.+++|+|++|+|||||++.+..
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence            34567899999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.39  E-value=0.0077  Score=51.89  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|.|+.|+||||+++.+...
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.39  E-value=0.0083  Score=51.77  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|.|+.|+||||+++.+...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.37  E-value=0.0089  Score=51.17  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|.|+.|+||||+++.+...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999987

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.36  E-value=0.0083  Score=51.98  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|.|++|+||||+|+.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.34  E-value=0.08  Score=52.13  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=21.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...++|+|+|.+|+||||++..++..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~  124 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYY  124 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35679999999999999999999753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.33  E-value=0.009  Score=50.23  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+.+|+|++|+|||||+.+++.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3889999999999999999965

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.33  E-value=0.01  Score=51.33  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|.|.|++|+||||+++.+...
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999775

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.32  E-value=0.011  Score=50.19  Aligned_cols=25  Identities=28%  Similarity=0.475  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++|+|++|+|||||++.+...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3568999999999999999999876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.32  E-value=0.01  Score=51.53  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.31  E-value=0.0086  Score=52.67  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+++|.|+.|+||||+++.+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999998764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.30  E-value=0.0082  Score=52.59  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|.|++|+||||+++.+...
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.27  E-value=0.0092  Score=51.72  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|.|++|+||||+|+.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999775

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.26  E-value=0.011  Score=53.73  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=22.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ....+|+|.|+.|+||||+|+.+..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999973

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.24  E-value=0.01  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.|.+.|.||+||||+|..++..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~   29 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHA   29 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            45888999999999998888765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.18  E-value=0.0051  Score=53.16  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|+|.|+.|+||||+++.+...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.16  E-value=0.02  Score=54.29  Aligned_cols=27  Identities=26%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.....++|+|++|+|||||++.+...
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345679999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.15  E-value=0.0086  Score=52.22  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|.|++|+||||+++.+...
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.10  E-value=0.016  Score=47.70  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|+|.+|+|||||++.+...
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.10  E-value=0.0087  Score=53.48  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|+|++|+||||+++.+...
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999875

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.06  E-value=0.041  Score=53.45  Aligned_cols=93  Identities=17%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCccc-HHHHHHHHHHHcCCCCCC--CCCcCCCchHHH--
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKT-AESIVKRILKRLGVDDGT--TNSFEGQGLAFL--  137 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~-~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~--  137 (398)
                      ..++|+|++|+|||||++.+..+  ....+ ..++++. +.+... ..+++.++...=.+....  ........+.+.  
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~-iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~  228 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAG-VGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRV  228 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEE-ESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEee-eccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHH
Confidence            46899999999999999999776  33322 2344554 555443 334444444321010000  000011122222  


Q ss_pred             ---HHHHHHHHh---CCCcEEEecCCCC
Q 015891          138 ---DYVLQQQLI---GKRYLIVLDDFED  159 (398)
Q Consensus       138 ---~~~l~~~l~---~k~~LlVLDdv~~  159 (398)
                         ...+++++.   ++..|+++||+..
T Consensus       229 ~~~~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          229 ALTGLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence               223455543   5789999999984

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.03  E-value=0.013  Score=49.87  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...++|+|++|+|||||++.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            467899999999999999999876

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.03  E-value=0.084  Score=55.04  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..+.|...+..      ...+.|+|+.|+||||++..+..
T Consensus        98 q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A           98 QRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             GHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHH
Confidence            34445555532      35799999999999997666643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.02  E-value=0.025  Score=53.25  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=23.5

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....+|+|+|.+|+|||||+..+...
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.01  E-value=0.012  Score=50.38  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|+|.|+.|+||||+++.+...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999775

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.96  E-value=0.033  Score=62.36  Aligned_cols=90  Identities=16%  Similarity=0.085  Sum_probs=62.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ++-++|-|+|+.|+||||||.++...  ....=...+|+. .....+..     +++.+|.+............++....
T Consensus      1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~-~e~~~~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A         1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEC-TTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEe-cCCCCCHH-----HHHHcCCCHHHeEEeCCCcHHHHHHH
Confidence            34589999999999999999999765  333334577877 66666654     27888887654433333455666666


Q ss_pred             HHHHHhC-CCcEEEecCCC
Q 015891          141 LQQQLIG-KRYLIVLDDFE  158 (398)
Q Consensus       141 l~~~l~~-k~~LlVLDdv~  158 (398)
                      +...++. ..-+||+|-|.
T Consensus      1501 ~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A         1501 CDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp             HHHHHHHTCCSEEEESCST
T ss_pred             HHHHHHcCCCCEEEEccHH
Confidence            6666644 67899999886

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.96  E-value=0.013  Score=49.21  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|.|++|+|||||++.+...
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHh
Confidence            3678999999999999999999765

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.95  E-value=0.015  Score=53.82  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..++|+|.|.||+||||.+..+...
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~a   71 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAA   71 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHH
Confidence            56899999999999999988877543

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.92  E-value=0.063  Score=52.33  Aligned_cols=97  Identities=12%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC---------CCc
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDDGTT---------NSF  129 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~---------~~~  129 (398)
                      .+-..++|+|.+|+|||+|+..+.++  +. .+-+.++++. +.+.. ....++.++...=.++....         ...
T Consensus       163 gkGqr~gIfgg~GvGKT~L~~~l~~~--~a~~~~~v~V~~~-iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~  239 (498)
T 1fx0_B          163 RRGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGG-VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM  239 (498)
T ss_dssp             CTTCCEEEEECSSSSHHHHHHHHHHH--TTTTCSSCEEEEE-ESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECT
T ss_pred             ccCCeEEeecCCCCCchHHHHHHHHH--HHhhCCCEEEEEE-cccCcHHHHHHHHhhhcccccccccccccceEEEEeCC
Confidence            45567899999999999999999876  32 2335667776 77654 45556666665422221000         000


Q ss_pred             CCCc-----hHHHHHHHHHHHhC---CCcEEEecCCCCH
Q 015891          130 EGQG-----LAFLDYVLQQQLIG---KRYLIVLDDFEDM  160 (398)
Q Consensus       130 ~~~~-----~~~~~~~l~~~l~~---k~~LlVLDdv~~~  160 (398)
                      +...     .......+++++++   +..|+++||+...
T Consensus       240 d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~  278 (498)
T 1fx0_B          240 NEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF  278 (498)
T ss_dssp             TSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence            1111     12223445667765   6899999999843

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.89  E-value=0.012  Score=51.28  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|.|++|+||||+++.+...
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.88  E-value=0.015  Score=55.00  Aligned_cols=24  Identities=17%  Similarity=0.403  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...++|+|++|+|||||++.+..-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999765

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.88  E-value=0.014  Score=51.55  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++|.|++|+||||+++.+...
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.85  E-value=0.025  Score=47.39  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||++.+...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999875

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.84  E-value=0.0039  Score=58.94  Aligned_cols=26  Identities=27%  Similarity=0.170  Sum_probs=22.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-..++|+|++|+|||||++.+.+.
T Consensus       172 ~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          172 GRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             BTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCChhHHHHHHHHH
Confidence            45668999999999999999988764

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=94.83  E-value=0.044  Score=53.22  Aligned_cols=97  Identities=15%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCcc-cHHHHHHHHHHHcCCCC-----CCC---CCcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDD-----GTT---NSFE  130 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~-----~~~---~~~~  130 (398)
                      .+-..++|+|.+|+|||+|+..+.++  +. .+-+.++++. +.+.. ...++++++...=.+..     ...   ...+
T Consensus       151 gkGQr~~Ifgg~G~GKT~L~~~i~~~--~~~~~~~v~V~~~-iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d  227 (482)
T 2ck3_D          151 AKGGKIGLFGGAGVGKTVLIMELINN--VAKAHGGYSVFAG-VGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMN  227 (482)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH--TTTTCSSEEEEEE-ESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTT
T ss_pred             ccCCeeeeecCCCCChHHHHHHHHHh--hHhhCCCEEEEEE-CCCcchHHHHHHHHhhhccccccccCCceEEEEEECCC
Confidence            45567899999999999999999876  22 2224456665 66553 45566666665433320     000   0011


Q ss_pred             CCchHH-----HHHHHHHHHh---CCCcEEEecCCCCH
Q 015891          131 GQGLAF-----LDYVLQQQLI---GKRYLIVLDDFEDM  160 (398)
Q Consensus       131 ~~~~~~-----~~~~l~~~l~---~k~~LlVLDdv~~~  160 (398)
                      .....+     ....++++++   ++..||++|++...
T Consensus       228 ~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~  265 (482)
T 2ck3_D          228 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF  265 (482)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence            111222     2233455554   47899999999843

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=94.83  E-value=0.059  Score=43.84  Aligned_cols=69  Identities=20%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             CCCchHHHHHHHH------HHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceE
Q 015891          130 EGQGLAFLDYVLQ------QQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLH  198 (398)
Q Consensus       130 ~~~~~~~~~~~l~------~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~  198 (398)
                      ..+++++++..+.      +.+..++-+++||++.   |....+.+...+.  ...|..||++||+..+.. +  .++++
T Consensus        57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~-~--~d~ii  133 (148)
T 1f2t_B           57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD-A--ADHVI  133 (148)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG-G--CSEEE
T ss_pred             HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH-h--CCEEE
Confidence            3678888887664      6778889999999999   4444444444443  223678999999986433 2  24555


Q ss_pred             EcC
Q 015891          199 QLQ  201 (398)
Q Consensus       199 ~l~  201 (398)
                      .+.
T Consensus       134 ~l~  136 (148)
T 1f2t_B          134 RIS  136 (148)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.82  E-value=0.013  Score=54.28  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|+.|+|||||++.+...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            4789999999999999999999865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.82  E-value=0.018  Score=57.48  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=22.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+++|+|++|+|||||++.+...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4578999999999999999999876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.80  E-value=0.015  Score=50.88  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|.|++|+||||+++.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.79  E-value=0.014  Score=50.47  Aligned_cols=22  Identities=36%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|.|++|+||||+++.+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.79  E-value=0.029  Score=49.28  Aligned_cols=25  Identities=32%  Similarity=0.511  Sum_probs=22.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|.|++|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999887

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.75  E-value=0.023  Score=52.26  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.+++|+|++|+|||||++.+. .
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~  187 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-G  187 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-H
Confidence            3689999999999999999998 6

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.74  E-value=0.18  Score=48.86  Aligned_cols=69  Identities=16%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-ccceEEEEecCCcccHHHHHHHHHHH-cCCC
Q 015891           46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FVPRIWVCTMSGQKTAESIVKRILKR-LGVD  122 (398)
Q Consensus        46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~~v~~v~~~~~~~~~~~~il~~-l~~~  122 (398)
                      -+..|..++ .  +-..-.++.|.|.+|+||||||..++..  .... =..++|++ .  ..+..++...++.. .+..
T Consensus       186 G~~~LD~~l-g--Gl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~s-l--E~~~~~l~~R~~~~~~~i~  256 (444)
T 2q6t_A          186 GFKELDQLI-G--TLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYS-L--EMPAAQLTLRMMCSEARID  256 (444)
T ss_dssp             SCHHHHHHH-C--CCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEE-S--SSCHHHHHHHHHHHHTTCC
T ss_pred             CCHhhhhhc-C--CcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEE-C--CCCHHHHHHHHHHHHcCCC
Confidence            344555555 2  3345678999999999999999999765  2211 12466665 4  34455666666543 3444

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=94.72  E-value=0.15  Score=59.76  Aligned_cols=132  Identities=16%  Similarity=0.181  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCc-----CCCchHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSF-----EGQGLAFLD  138 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~-----~~~~~~~~~  138 (398)
                      +-+.++|++|+|||++|+.+...  ...  .....+. ++...+...++..+-..+..........     .        
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~--~~~--~~~~~in-fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-------- 1334 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRN--SSL--YDVVGIN-FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-------- 1334 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS--CSS--CEEEEEE-CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS--------
T ss_pred             CeEEEECCCCCCHHHHHHHHHhc--CCC--CceEEEE-eecCCCHHHHHHHHHHHhhhccccCCccccCCCC--------


Q ss_pred             HHHHHHHhCCCcEEEecCCC----CH----HHHHHHHhHcCCCC-------------CCEEEEEeCCh------HHHHHh
Q 015891          139 YVLQQQLIGKRYLIVLDDFE----DM----EVCKHLSKVLPRGY-------------GERLIITSRNE------KLTTEM  191 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~----~~----~~~~~l~~~l~~~~-------------gs~IIiTTR~~------~v~~~~  191 (398)
                              +++.++.+||+.    +.    ...+.++..+..+.             +..+|.++-..      .+...+
T Consensus      1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A         1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp             --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred             --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh


Q ss_pred             cCCCceEEcCCCCChhHHHHHHHhhh
Q 015891          192 VGEENLHQLQPLSDQESCWLIYRDSV  217 (398)
Q Consensus       192 ~~~~~~~~l~~L~~~e~~~~l~~~~~  217 (398)
                      .....++.+...+. ++...+|...+
T Consensus      1407 lRrf~vi~i~~P~~-~~l~~I~~~il 1431 (2695)
T 4akg_A         1407 TRHAAILYLGYPSG-KSLSQIYEIYY 1431 (2695)
T ss_dssp             HTTEEEEECCCCTT-THHHHHHHHHH
T ss_pred             hheeeEEEeCCCCH-HHHHHHHHHHH

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.72  E-value=0.03  Score=52.35  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=23.1

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      -....+++|+|++|+|||||++.+..
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.029  Score=47.26  Aligned_cols=26  Identities=23%  Similarity=0.233  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34568999999999999999999876

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.68  E-value=0.11  Score=50.69  Aligned_cols=51  Identities=25%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCcccHHHHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      ..-.++.|.|.+|+|||||+..++..  ..... ..++|++ ..  .+..++...++
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s-~E--~s~~~l~~r~~  252 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFS-LE--MSAQQLVMRML  252 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEE-SS--SCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEE-CC--CCHHHHHHHHH
Confidence            45679999999999999999999776  32211 2466665 33  34455555544

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.68  E-value=0.022  Score=52.91  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|.|+|+.|+|||||+..++..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999987

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.68  E-value=0.015  Score=48.79  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|+|.+|+|||||++.+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.67  E-value=0.0082  Score=54.92  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=19.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..+|+|.|+.|+||||+|+.+...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.67  E-value=0.018  Score=50.64  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|.|.|++|+||||+++.+...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.66  E-value=0.017  Score=53.76  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|+|.|+.|+||||||+.++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            58999999999999999999876

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.66  E-value=0.022  Score=46.43  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..+.+|+|++|+|||||..+++-
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999998853

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.65  E-value=0.018  Score=52.73  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|.|.|++|+||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.64  E-value=0.019  Score=50.66  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|.|++|+||||+++.+...
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45668999999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.62  E-value=0.018  Score=55.60  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|.|+|++|+||||+|+.+...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999999875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.61  E-value=0.031  Score=53.80  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      ...+++|+|++|+|||||++.+...  +... .. +.++. -.-......     ..+..        ............
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~--l~~~-~g~I~~~e-d~ie~~~~~-----~~q~~--------v~~~~g~~f~~~  228 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQE--LNSS-ERNILTVE-DPIEFDIDG-----IGQTQ--------VNPRVDMTFARG  228 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH--HCCT-TSCEEEEE-SSCCSCCSS-----SEEEE--------CBGGGTBCHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEEec-ccchhccCC-----cceEE--------EccccCcCHHHH
Confidence            4678999999999999999999775  2222 23 33333 111100000     00000        000001122455


Q ss_pred             HHHHHhCCCcEEEecCCCCHHH
Q 015891          141 LQQQLIGKRYLIVLDDFEDMEV  162 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~~~~~  162 (398)
                      ++..++..+.++++.++.+...
T Consensus       229 lr~~Lrq~pd~i~vgEiRd~et  250 (418)
T 1p9r_A          229 LRAILRQDPDVVMVGEIRDLET  250 (418)
T ss_dssp             HHHHGGGCCSEEEESCCCSHHH
T ss_pred             HHHHhccCCCeEEEcCcCCHHH
Confidence            7777888899999999988643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.55  E-value=0.021  Score=52.46  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+++|.||.|+|||||+..++..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            468899999999999999999887

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.51  E-value=0.022  Score=48.78  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -+.|.|.|++|+||||||..+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999886

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.48  E-value=0.02  Score=52.93  Aligned_cols=24  Identities=29%  Similarity=0.301  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|+|+.|+|||||++.++..
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999886

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.46  E-value=0.018  Score=54.04  Aligned_cols=26  Identities=35%  Similarity=0.423  Sum_probs=23.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-.+++|+|++|+|||||++.+.+.
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999887

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.46  E-value=0.025  Score=48.49  Aligned_cols=50  Identities=22%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .|+|-|.-|+||||.++.+.+.  ....-..+.+.. ..........+..++.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~tr-eP~~t~~~~~ir~~l~   51 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKR-EPGGTETGEKIRKILL   51 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEE-CCCCCcHHHHHHHHhh
Confidence            4788899999999999999876  333322333333 3333444455555554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.44  E-value=0.025  Score=45.86  Aligned_cols=23  Identities=35%  Similarity=0.655  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|+++|.+|+|||||+..+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999876

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.34  E-value=0.034  Score=45.76  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||++.+...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            3457899999999999999999765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.30  E-value=0.03  Score=45.65  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||++.+.+.
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3556899999999999999999875

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=94.26  E-value=0.11  Score=54.74  Aligned_cols=86  Identities=19%  Similarity=0.253  Sum_probs=58.5

Q ss_pred             HHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCc--EEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891          114 RILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRY--LIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN  184 (398)
Q Consensus       114 ~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~--LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~  184 (398)
                      ..+..+++...  .......+++++++..|++.|..++.  ++|||++.   |....+.+...+.  ...|.+||++||+
T Consensus       446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd  525 (916)
T 3pih_A          446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD  525 (916)
T ss_dssp             HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred             HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            44556777542  23344589999999999999988655  99999999   3322222222222  2458899999999


Q ss_pred             hHHHHHhcCCCceEEcCC
Q 015891          185 EKLTTEMVGEENLHQLQP  202 (398)
Q Consensus       185 ~~v~~~~~~~~~~~~l~~  202 (398)
                      .+++..   .++++.+.|
T Consensus       526 ~~~~~~---aD~ii~lgp  540 (916)
T 3pih_A          526 EEVIRN---ADHIIDIGP  540 (916)
T ss_dssp             HHHHHT---CSEEEEEES
T ss_pred             HHHHHh---CCEEEEEcC
Confidence            988754   466777733

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=94.25  E-value=0.059  Score=50.93  Aligned_cols=47  Identities=17%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|....+.++...+..  -......|.|+|.+|+||+++|+.+...
T Consensus       129 ~~~ig~s~~~~~~~~~~~~--~a~~~~~vli~GesGtGKe~lAr~ih~~  175 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPK--IAKSKAPVLITGESGTGKEIVARLIHRY  175 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHH--HHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHhhhhh--hhccchhheEEeCCCchHHHHHHHHHHh
Confidence            4688888887777776654  1223345789999999999999999765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.25  E-value=0.029  Score=51.47  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...++.|.|+.|+||||||..++..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh
Confidence            4578999999999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.20  E-value=0.015  Score=49.81  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||++.+...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45578999999999999999998765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.19  E-value=0.025  Score=55.35  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+++|+|++|+|||||++.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            7999999999999999999964

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.16  E-value=0.036  Score=45.83  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+...|+|+|.+|+|||||+..+.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.14  E-value=0.025  Score=45.91  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+++|.+|+|||||+..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.14  E-value=0.034  Score=54.86  Aligned_cols=46  Identities=11%  Similarity=0.016  Sum_probs=33.0

Q ss_pred             CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+.|.+..+.+.+....  ......+|.+.|++|+||||+++.+...
T Consensus       373 ~~f~rpeV~~vLr~~~~~--~~~~~~~I~l~GlsGsGKSTIa~~La~~  418 (511)
T 1g8f_A          373 EWFSYPEVVKILRESNPP--RPKQGFSIVLGNSLTVSREQLSIALLST  418 (511)
T ss_dssp             TTTSCHHHHHHHHHHSCC--GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccccChhhHHHHHHhccc--ccccceEEEecccCCCCHHHHHHHHHHH
Confidence            344555556666665422  2234578999999999999999999887

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=94.13  E-value=0.025  Score=54.55  Aligned_cols=98  Identities=13%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-cc-ceEEEEecCCc-ccHHHHHHHHHHHcCCCCCCC--CCcCCCchHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FV-PRIWVCTMSGQ-KTAESIVKRILKRLGVDDGTT--NSFEGQGLAF  136 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~  136 (398)
                      +-..++|+|.+|+|||+|+.++.+....... =+ .++++. +.+. ....+++.++...=.++....  ...+.....+
T Consensus       150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r  228 (465)
T 3vr4_D          150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER  228 (465)
T ss_dssp             TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred             cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence            3445789999999999999999887322111 11 345555 5544 344555555444211110000  0001122222


Q ss_pred             H-----HHHHHHHHh---CCCcEEEecCCCCH
Q 015891          137 L-----DYVLQQQLI---GKRYLIVLDDFEDM  160 (398)
Q Consensus       137 ~-----~~~l~~~l~---~k~~LlVLDdv~~~  160 (398)
                      .     ...++++++   ++..|+++||+...
T Consensus       229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~  260 (465)
T 3vr4_D          229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTNY  260 (465)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence            2     234566665   46899999999843

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.10  E-value=0.033  Score=46.22  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|+|.+|+|||||++.+...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.09  E-value=0.042  Score=45.35  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=22.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...--|+|+|.+|+|||||+..+.+.
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            34567899999999999999999765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.08  E-value=0.035  Score=46.75  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.08  E-value=0.022  Score=54.81  Aligned_cols=25  Identities=36%  Similarity=0.514  Sum_probs=21.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++|+|++|+|||||++.++..
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCc
Confidence            3334999999999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.05  E-value=0.037  Score=49.24  Aligned_cols=26  Identities=35%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++.+.|.+|+||||++..++..
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~   37 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRY   37 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence            35688999999999999999999754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.04  E-value=0.023  Score=52.26  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.|+|+|++|+|||||++.++..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            34699999999999999998753

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=93.99  E-value=0.35  Score=46.56  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .....++..|.|.+|+||||+++..++
T Consensus       157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          157 HVSSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence            345788999999999999999998875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.98  E-value=0.035  Score=45.45  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-.|+|+|.+|+|||||++.+...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            34567899999999999999999865

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=93.94  E-value=0.07  Score=46.27  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|.|+.|+||||+++.+...
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~   29 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAER   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999776

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.93  E-value=0.043  Score=50.36  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.+++|+|++|+|||||++.+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc
Confidence            358999999999999999999875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.87  E-value=0.032  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+++|+|++|+|||||++.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHhcc
Confidence            48999999999999999999876

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.86  E-value=0.038  Score=51.91  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+|+|+|.+|+|||||.+.+...
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            34789999999999999999999763

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.85  E-value=0.046  Score=44.40  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-|+++|.+|+|||||++.+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999865

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=93.82  E-value=0.079  Score=51.75  Aligned_cols=95  Identities=17%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccc-eEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCCCchH
Q 015891           61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVP-RIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEGQGLA  135 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~~~~  135 (398)
                      .+-..++|+|.+|+|||+|| ..+.+.  ..  -+. ++++. +.+.. ....+.+.+...=.++....  ...+.....
T Consensus       173 grGQR~~I~g~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~-IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~  247 (515)
T 2r9v_A          173 GRGQRELIIGDRQTGKTAIAIDTIINQ--KG--QGVYCIYVA-IGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL  247 (515)
T ss_dssp             ETTCBEEEEEETTSSHHHHHHHHHHTT--TT--TTEEEEEEE-ESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred             ccCCEEEEEcCCCCCccHHHHHHHHHh--hc--CCcEEEEEE-cCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence            44567899999999999995 577776  22  232 35555 66554 34455555554211111000  000111222


Q ss_pred             HH-----HHHHHHHHh--CCCcEEEecCCCCH
Q 015891          136 FL-----DYVLQQQLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       136 ~~-----~~~l~~~l~--~k~~LlVLDdv~~~  160 (398)
                      +.     ...++++++  ++..||++||+...
T Consensus       248 r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~  279 (515)
T 2r9v_A          248 QYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH  279 (515)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence            22     224455554  47899999999843

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.78  E-value=0.033  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+|+|.+|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=93.78  E-value=0.057  Score=50.45  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....+++|+|.+|+|||||+..+...
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.76  E-value=0.038  Score=47.60  Aligned_cols=26  Identities=23%  Similarity=0.233  Sum_probs=23.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|++|+|||||+..+.+.
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45677999999999999999999876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.76  E-value=0.042  Score=46.09  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||+..+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            4557899999999999999999876

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.76  E-value=0.033  Score=46.74  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-.|+++|.+|+|||||+..+...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            356889999999999999999865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.76  E-value=0.035  Score=45.25  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+|+|.+|+|||||++.+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.75  E-value=0.034  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+++|.+|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.75  E-value=0.04  Score=46.07  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||++.+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999775

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.75  E-value=0.11  Score=52.54  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+.+.|.|++|+||||++..+..
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~  186 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLA  186 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHH
Confidence            47899999999999999887754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.74  E-value=0.03  Score=45.65  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5889999999999999999754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=93.73  E-value=0.038  Score=50.68  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+...|+|+|.+|+|||||++.+...
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34678999999999999999999865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.72  E-value=0.05  Score=44.93  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|..|+|||||++.+.+.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45667999999999999999999876

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.71  E-value=0.044  Score=45.31  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=22.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34667899999999999999999765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.69  E-value=0.037  Score=48.80  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|.|+.|+||||+++.+...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999876

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=93.65  E-value=0.1  Score=50.98  Aligned_cols=95  Identities=14%  Similarity=0.225  Sum_probs=51.4

Q ss_pred             CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccc-eEEEEecCCccc-HHHHHHHHHHHcCCC-------CCCCCCcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVP-RIWVCTMSGQKT-AESIVKRILKRLGVD-------DGTTNSFE  130 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~~v~~v~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~  130 (398)
                      .+-..++|+|.+|+|||+|| ..+.+..  .  -+. ++++. +.+... ...+.+.+...=.++       ....+...
T Consensus       161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~-iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~  235 (507)
T 1fx0_A          161 GRGQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVA-IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATL  235 (507)
T ss_dssp             BTTCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEE-ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGG
T ss_pred             ccCCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEE-cCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHH
Confidence            34566889999999999995 5777762  2  232 35555 665543 344444443321111       11111111


Q ss_pred             CCchHHHHHHHHHHHh--CCCcEEEecCCCCH
Q 015891          131 GQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       131 ~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~  160 (398)
                      -.........++++++  ++..||++||+...
T Consensus       236 r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~  267 (507)
T 1fx0_A          236 QYLAPYTGAALAEYFMYRERHTLIIYDDLSKQ  267 (507)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence            1111222334455553  57899999999854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.63  E-value=0.053  Score=44.28  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+|+|.+|+|||||++.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.61  E-value=0.054  Score=44.25  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+|+|.+|+|||||+..+...
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.61  E-value=0.032  Score=54.04  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=23.9

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -..-..++|+|++|+|||||++.+.+.
T Consensus       154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          154 VGRGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            345678999999999999999999886

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.61  E-value=0.089  Score=47.26  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+++|.+|+|||||...+...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999876

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.59  E-value=0.042  Score=44.84  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||++.+.+.
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999876

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.57  E-value=0.091  Score=46.98  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|..|+|||||+..+...
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999876

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.56  E-value=0.039  Score=46.13  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999999876

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=93.54  E-value=0.051  Score=47.80  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||++.+...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            45678999999999999999999876

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.52  E-value=0.049  Score=44.44  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .--|+|+|.+|+|||||+..+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            356899999999999999999865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.51  E-value=0.045  Score=45.12  Aligned_cols=25  Identities=28%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4567899999999999999999765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.48  E-value=0.048  Score=45.55  Aligned_cols=26  Identities=31%  Similarity=0.264  Sum_probs=22.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...--|+|+|.+|+|||||++.+.+.
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999999875

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=93.48  E-value=0.3  Score=46.12  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=26.6

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++.+.|..   -.+-..++|+|.+|+|||+|+..+.+.
T Consensus       164 raID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~  198 (427)
T 3l0o_A          164 RLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANG  198 (427)
T ss_dssp             HHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHH
Confidence            34555543   345567899999999999999988875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.48  E-value=0.046  Score=45.16  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +...-|+|+|.+|+|||||+..+...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            45667899999999999999999765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.45  E-value=0.04  Score=46.30  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||+..+.+.
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999888765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.45  E-value=0.045  Score=46.79  Aligned_cols=40  Identities=28%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +....+.+..+..    ....-.|+|+|.+|+|||||+..+.+.
T Consensus        14 ~~~~~~~m~~~~~----~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           14 LVPRGSHMENLYF----QGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccchhHHHhHhh----cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3344444444432    234567899999999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.44  E-value=0.053  Score=44.67  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +....|+|+|.+|+|||||++.+...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34667999999999999999999866

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=93.44  E-value=0.14  Score=54.03  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=58.0

Q ss_pred             HHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC--CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          115 ILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK--RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       115 il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      .+..+|+...  ......+++++.++..|+..|...  +.++|||++.   +....+.|...+.  ...|.+||+++|+.
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            3667787642  333445899999999999999887  4899999999   3322222222221  24588999999999


Q ss_pred             HHHHHhcCCCceEEcC
Q 015891          186 KLTTEMVGEENLHQLQ  201 (398)
Q Consensus       186 ~v~~~~~~~~~~~~l~  201 (398)
                      ++...   +++++.|.
T Consensus       567 ~~i~~---ADrIi~Lg  579 (972)
T 2r6f_A          567 DTMLA---ADYLIDIG  579 (972)
T ss_dssp             HHHHS---CSEEEEEC
T ss_pred             HHHHh---CCEEEEeC
Confidence            87653   46666664

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=93.44  E-value=0.048  Score=45.97  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ......|+|+|.+|+|||||+..+...
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            346778999999999999999999776

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.43  E-value=0.042  Score=44.85  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .--|+|+|.+|+|||||+..+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999864

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=93.42  E-value=0.32  Score=42.66  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=26.9

Q ss_pred             cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+...+.+..++..       .-+.|+|+.|.|||.+|..+...
T Consensus        94 l~~~Q~~ai~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~  131 (237)
T 2fz4_A           94 LRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINE  131 (237)
T ss_dssp             CCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhC-------CCEEEEeCCCCCHHHHHHHHHHH
Confidence            355555556555532       12788999999999999988765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.42  E-value=0.043  Score=46.68  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +...|+|+|.+|+|||||++.+.+.
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.41  E-value=0.063  Score=44.61  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=22.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-.|+|+|.+|+|||||+..+.+.
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.41  E-value=0.055  Score=44.26  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||+..+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.40  E-value=0.057  Score=45.15  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +...-|+|+|.+|+|||||+..+...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999999865

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=93.38  E-value=0.044  Score=47.42  Aligned_cols=106  Identities=14%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             CeeEEEEEcCCCChHHH-HHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTT-LCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      .-.+..|+|+-|+|||| |.+.+.+-  ........++-.    ..+.......+.+.+|...+....   .....    
T Consensus        27 ~G~I~vitG~M~sGKTT~Llr~~~r~--~~~g~kvli~kp----~~D~R~~~~~I~Sr~G~~~~a~~v---~~~~d----   93 (219)
T 3e2i_A           27 SGWIECITGSMFSGKSEELIRRLRRG--IYAKQKVVVFKP----AIDDRYHKEKVVSHNGNAIEAINI---SKASE----   93 (219)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEE----C-----------CBTTBCCEEEEE---SSGGG----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH--HHcCCceEEEEe----ccCCcchhhhHHHhcCCceeeEEe---CCHHH----
Confidence            45788999999999999 55555432  112233333322    111112223455666655432211   11111    


Q ss_pred             HHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEe
Q 015891          141 LQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITS  182 (398)
Q Consensus       141 l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTT  182 (398)
                      +...+..+...|++|++.  +.++.+.+....  ..|-.||+.-
T Consensus        94 i~~~i~~~~dvV~IDEaQFf~~~~v~~l~~la--~~gi~Vi~~G  135 (219)
T 3e2i_A           94 IMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLS--ADGHRVIVAG  135 (219)
T ss_dssp             GGGSCCTTCSEEEECCGGGSCTHHHHHHHHHH--HTTCEEEEEE
T ss_pred             HHHHHhcCCCEEEEechhcCCHHHHHHHHHHH--HCCCEEEEee
Confidence            112234567899999998  545555555443  2466777654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=93.38  E-value=0.053  Score=49.91  Aligned_cols=28  Identities=25%  Similarity=0.422  Sum_probs=24.3

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .......|+|+|.+|+|||||...+...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3456889999999999999999999875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=93.34  E-value=0.2  Score=52.46  Aligned_cols=84  Identities=17%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             HHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCC--cEEEecCCCC---HHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          115 ILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKR--YLIVLDDFED---MEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       115 il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~--~LlVLDdv~~---~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      .+..+|+...  ......+++++.++..|++.|..++  .++|||++..   ....+.|...+.  ...|..||+++|+.
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            4667787642  3334458999999999999999887  5999999983   222222222221  23588999999999


Q ss_pred             HHHHHhcCCCceEEcC
Q 015891          186 KLTTEMVGEENLHQLQ  201 (398)
Q Consensus       186 ~v~~~~~~~~~~~~l~  201 (398)
                      ++...   .++++.+.
T Consensus       442 ~~l~~---aD~ii~lg  454 (842)
T 2vf7_A          442 DVIRR---ADWLVDVG  454 (842)
T ss_dssp             HHHTT---CSEEEEEC
T ss_pred             HHHHh---CCEEEEeC
Confidence            87653   45666664

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=93.34  E-value=0.053  Score=46.60  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..+.+|+|++|+||||+..+++.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            46889999999999999998853

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.32  E-value=0.041  Score=46.43  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|+|.+|+|||||++.+.+.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.26  E-value=0.053  Score=46.32  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=21.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3567899999999999999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.25  E-value=0.045  Score=44.51  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||+..+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.24  E-value=0.1  Score=50.49  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             ccchhhHHHHHHHHhccC-C------CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           41 HGFANEELHLQKLLSNRG-T------DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        41 vGR~~~~~~l~~~L~~~~-~------~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|.++.++.|.+.+.... .      ......++|+|.+|+|||||++.+...
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence            466777777777765321 1      224568999999999999999999876

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.23  E-value=0.054  Score=45.16  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -..|.|.|++|+||||||..+...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            357899999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=93.20  E-value=0.19  Score=47.38  Aligned_cols=68  Identities=10%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             CCCchHHHHHHHHHHHh------CCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceE
Q 015891          130 EGQGLAFLDYVLQQQLI------GKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLH  198 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~  198 (398)
                      ..+++++++..+.+.+.      .++-+++||++.   |....+.+...+.  ...|..||++||+..+...   .++++
T Consensus       279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~---~d~~~  355 (365)
T 3qf7_A          279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA---FDRKL  355 (365)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT---CSCEE
T ss_pred             hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh---CCEEE
Confidence            47899999999888887      789999999999   4444444443332  2358899999999987443   24455


Q ss_pred             Ec
Q 015891          199 QL  200 (398)
Q Consensus       199 ~l  200 (398)
                      .+
T Consensus       356 ~l  357 (365)
T 3qf7_A          356 RI  357 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=93.19  E-value=0.027  Score=56.88  Aligned_cols=47  Identities=19%  Similarity=0.087  Sum_probs=33.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCC---------CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDD---------QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~---------~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++|.+...+.+...|..  ...         ...-+.|+|++|+|||+||+.+++.
T Consensus       295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~  350 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV  350 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred             chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence            5688988766666444432  110         0115899999999999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=93.18  E-value=0.056  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|+|.+|+|||||++.+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=93.17  E-value=0.053  Score=51.23  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      .+.+|+|++|+|||||..+++
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999875

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=93.17  E-value=0.051  Score=52.42  Aligned_cols=97  Identities=10%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCC--------cccc-ceEEEEecCCcc-cHHHHHHHHHHHcC-CCCCC--CC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK--------TQFV-PRIWVCTMSGQK-TAESIVKRILKRLG-VDDGT--TN  127 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~~v~~v~~~~-~~~~~~~~il~~l~-~~~~~--~~  127 (398)
                      .+-..++|.|.+|+|||+|+.++++.....        ++=+ .++++. +.+.. ....++.++... + ++...  ..
T Consensus       145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~-iGeR~~Ev~e~~~~l~~~-g~~~rtvvv~~  222 (464)
T 3gqb_B          145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAA-MGITQRELSYFIQEFERT-GALSRSVLFLN  222 (464)
T ss_dssp             BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEE-EEECHHHHHHHHHHHHHT-SGGGGEEEEEE
T ss_pred             ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEE-ecCchHHHHHHHHHhhhc-ccccceEEEEE
Confidence            344567899999999999999998873321        1111 344555 55443 344555554432 1 11000  00


Q ss_pred             CcCCCchHHH-----HHHHHHHHh---CCCcEEEecCCCC
Q 015891          128 SFEGQGLAFL-----DYVLQQQLI---GKRYLIVLDDFED  159 (398)
Q Consensus       128 ~~~~~~~~~~-----~~~l~~~l~---~k~~LlVLDdv~~  159 (398)
                      ..+.....+.     ...++++++   ++..|+++||+..
T Consensus       223 t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr  262 (464)
T 3gqb_B          223 KADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN  262 (464)
T ss_dssp             ETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence            0011222222     234566665   4688999999984

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.17  E-value=0.04  Score=52.98  Aligned_cols=22  Identities=41%  Similarity=0.699  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|+|++|+|||||++.++..
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3699999999999999999875

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=93.17  E-value=0.16  Score=49.48  Aligned_cols=95  Identities=19%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccc-eEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCCCchH
Q 015891           61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVP-RIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEGQGLA  135 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~~~~  135 (398)
                      .+-..++|+|.+|+|||+|| ..+.+.  ..  -+. ++++. +.+.. ....+.+.+...=.++....  ...+.....
T Consensus       160 grGQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~-iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~  234 (502)
T 2qe7_A          160 GRGQRELIIGDRQTGKTTIAIDTIINQ--KG--QDVICIYVA-IGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPL  234 (502)
T ss_dssp             BTTCBCEEEECSSSCHHHHHHHHHHGG--GS--CSEEEEEEE-ESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHH
T ss_pred             ccCCEEEEECCCCCCchHHHHHHHHHh--hc--CCcEEEEEE-CCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHH
Confidence            45567899999999999995 577776  22  232 35555 66554 34455555554322221100  001112222


Q ss_pred             HH-----HHHHHHHHh--CCCcEEEecCCCCH
Q 015891          136 FL-----DYVLQQQLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       136 ~~-----~~~l~~~l~--~k~~LlVLDdv~~~  160 (398)
                      +.     ...+.++++  ++..||++||+...
T Consensus       235 r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~  266 (502)
T 2qe7_A          235 LYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ  266 (502)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence            22     124455554  47899999998843

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=93.14  E-value=0.054  Score=50.96  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+++|+|++|+|||||..+++.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4899999999999999999974

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.14  E-value=0.051  Score=45.11  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||+..+.+.
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            4567899999999999999999854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.13  E-value=0.046  Score=45.03  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.|+|+|..|+|||||+..+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.12  E-value=0.025  Score=52.06  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.+++|+|++|+|||||++.+...
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHhccc
Confidence            358999999999999999999765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.11  E-value=0.051  Score=46.14  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .....|+|+|.+|+|||||++.+..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3466899999999999999999853

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.09  E-value=0.047  Score=47.93  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....++|.|++|+||||+|+.+...
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999999775

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.08  E-value=0.067  Score=44.95  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=22.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..--|+|+|.+|+|||||+..+...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            34567999999999999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=93.07  E-value=0.064  Score=46.68  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34677999999999999999999775

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.05  E-value=0.061  Score=44.50  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4457899999999999999999765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.04  E-value=0.065  Score=44.45  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||++.+...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3567899999999999999999865

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.03  E-value=0.052  Score=51.70  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|+|.|+.|+|||||+..++..
T Consensus         3 ~~i~i~GptgsGKttla~~La~~   25 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQK   25 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHH
Confidence            57899999999999999999875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.03  E-value=0.072  Score=45.15  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999999765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=93.02  E-value=0.065  Score=44.99  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...--|+|+|.+|+|||||+..+.+.
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            34567899999999999999999765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.00  E-value=0.073  Score=44.78  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=22.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-.|+|+|.+|+|||||+..+...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4556899999999999999999876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.00  E-value=0.052  Score=44.96  Aligned_cols=25  Identities=32%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||+..+...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999999865

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.99  E-value=0.043  Score=47.45  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+|+|.|+.|+||||+++.+...
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999775

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=92.99  E-value=0.039  Score=45.66  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.7

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+++|.+|+|||||+..+.+.
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.98  E-value=0.058  Score=45.78  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999999876

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.97  E-value=0.069  Score=44.43  Aligned_cols=26  Identities=35%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..--|+|+|.+|+|||||++.+.+.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34567899999999999999999765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.96  E-value=0.066  Score=45.47  Aligned_cols=26  Identities=31%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            34667999999999999999999765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.96  E-value=0.062  Score=44.73  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .--|+|+|.+|+|||||+..+.+.
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            446899999999999999999865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=92.95  E-value=0.1  Score=45.51  Aligned_cols=26  Identities=27%  Similarity=0.241  Sum_probs=23.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|.|.|+.|+||||+++.+.+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999876

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.95  E-value=0.053  Score=45.49  Aligned_cols=25  Identities=32%  Similarity=0.163  Sum_probs=21.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||++.+.+.
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhh
Confidence            4567899999999999999877665

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.95  E-value=0.037  Score=49.59  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|.|+.|+||||+++.+...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=92.94  E-value=0.091  Score=47.39  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|+|+|.+|+|||||.+.+...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457899999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=92.94  E-value=0.046  Score=54.09  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=51.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQ  143 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~  143 (398)
                      ..++|+|++|+|||||++.+..-  +. .-...+.+.+.. ......     -.++....  .... ..........++.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~--i~-~~~giitied~~-E~~~~~-----~~~v~~~~--r~~~-~~~~~~~~~~l~~  328 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMF--IP-PDAKVVSIEDTR-EIKLYH-----ENWIAEVT--RTGM-GEGEIDMYDLLRA  328 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG--SC-TTCCEEEEESSC-CCCCCC-----SSEEEEEC--BCCS-SSCCBCHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh--CC-CCCCEEEEcCcc-cccCCC-----CCeEEEEe--eccc-ccCCcCHHHHHHH
Confidence            45899999999999999999876  32 223344444111 110000     00000000  0000 0111123445677


Q ss_pred             HHhCCCcEEEecCCCCHHHHHHHHhH
Q 015891          144 QLIGKRYLIVLDDFEDMEVCKHLSKV  169 (398)
Q Consensus       144 ~l~~k~~LlVLDdv~~~~~~~~l~~~  169 (398)
                      .++..+-.++++++...+....+...
T Consensus       329 ~LR~~PD~iivgEir~~E~~~~l~a~  354 (511)
T 2oap_1          329 ALRQRPDYIIVGEVRGREAQTLFQAM  354 (511)
T ss_dssp             TGGGCCSEEEESCCCSTHHHHHHHHH
T ss_pred             hhccCCCeEEeCCcCHHHHHHHHHhh
Confidence            78888999999999987766555543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.91  E-value=0.12  Score=50.06  Aligned_cols=65  Identities=9%  Similarity=0.060  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      .-+..|..++.   +-..-..+.|.|.+|+||||||.+++.+  ....=..++|++ ..  .+..++...++.
T Consensus       182 TG~~~LD~~lg---Gl~~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fS-lE--ms~~ql~~R~~~  246 (444)
T 3bgw_A          182 SGFTELDRMTY---GYKRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS-LE--MGKKENIKRLIV  246 (444)
T ss_dssp             CSCHHHHHHHS---SBCSSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEEC-SS--SCTTHHHHHHHH
T ss_pred             CCcHHHHhhcC---CCCCCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEE-CC--CCHHHHHHHHHH
Confidence            33444555552   3345678999999999999999999776  222212355655 33  344445555444

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.89  E-value=0.054  Score=45.77  Aligned_cols=25  Identities=36%  Similarity=0.561  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3567899999999999999999865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.87  E-value=0.074  Score=44.13  Aligned_cols=24  Identities=33%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .--|+|+|.+|+|||||+..+.+.
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.84  E-value=0.058  Score=46.24  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||+..+...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.84  E-value=0.054  Score=45.65  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.5

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...--|+|+|.+|+|||||+..+...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            34567999999999999999999866

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.82  E-value=0.071  Score=44.46  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKP   87 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~   87 (398)
                      .....|+|+|.+|+|||||+..+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            356779999999999999999998763

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=92.82  E-value=0.31  Score=47.53  Aligned_cols=96  Identities=16%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccceEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCCCchHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEGQGLAF  136 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~  136 (398)
                      .+-..++|.|..|+|||+|+ ..+.+.   +..-..++++. +.+.. ....++..+...=.++....  ...+.....+
T Consensus       160 grGQR~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~-IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r  235 (513)
T 3oaa_A          160 GRGQRELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVA-IGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ  235 (513)
T ss_dssp             BTTCBCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEE-ESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred             ccCCEEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEE-ecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence            44567889999999999996 567765   22212245666 77654 34555565544322221100  0011122222


Q ss_pred             H-----HHHHHHHHh--CCCcEEEecCCCCH
Q 015891          137 L-----DYVLQQQLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       137 ~-----~~~l~~~l~--~k~~LlVLDdv~~~  160 (398)
                      .     ...+.++++  ++..||++||+...
T Consensus       236 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~  266 (513)
T 3oaa_A          236 YLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ  266 (513)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence            1     123444553  57899999999843

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.81  E-value=0.047  Score=45.38  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=22.4

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+...
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=92.78  E-value=0.1  Score=45.97  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|.|+.|+||||+++.+...
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~   50 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVET   50 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999876

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.78  E-value=0.062  Score=53.29  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+|.++|++|+||||+|+.+...
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~   58 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRY   58 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.77  E-value=0.079  Score=44.47  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +...-|+|+|..|+|||||+..+.+.
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            34567999999999999999999875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.74  E-value=0.082  Score=43.63  Aligned_cols=25  Identities=36%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||+..+...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4567899999999999999999765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.73  E-value=0.087  Score=44.04  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .....|+|+|.+|+|||||+..+...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999865

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.72  E-value=0.056  Score=46.32  Aligned_cols=25  Identities=32%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||++.+...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999876

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.72  E-value=0.06  Score=45.19  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=21.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+.+.
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            3556899999999999999999865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=92.71  E-value=0.062  Score=45.44  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..--|+|+|.+|+|||||+..+..
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            345699999999999999999974

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=92.70  E-value=0.09  Score=52.44  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=31.4

Q ss_pred             CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+-|.+..+.+.+....  ......+|.+.|++|+||||+|+.+...
T Consensus       350 ~~~~r~eV~~~lr~~~~~--~~~~~~~I~l~G~~GsGKSTia~~La~~  395 (546)
T 2gks_A          350 EWFTRPEVAEILAETYVP--KHKQGFCVWLTGLPCAGKSTIAEILATM  395 (546)
T ss_dssp             TTTSCHHHHHHHHHHSCC--GGGCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHhhcc--ccccceEEEccCCCCCCHHHHHHHHHHH
Confidence            334455555555555421  2234578999999999999999999775

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.68  E-value=0.082  Score=44.28  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-|+|+|.+|+|||||+..+...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4567999999999999999999765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=92.67  E-value=0.065  Score=45.39  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=20.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..--|+|+|.+|+|||||+..+.+.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567899999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-18
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.004

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.8 bits (201), Expect = 3e-18
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 18/221 (8%)

Query: 25  ETNVPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIF 84
             NVP           +        + K L     D     + + G AG GK+ +  +  
Sbjct: 13  LGNVP------KQMTCYIREYHVDRVIKKLDEMC-DLDSFFLFLHGRAGSGKSVIASQAL 65

Query: 85  HKPD--VKTQFVPRIWVC---TMSGQKTAESIVKRILKRLGVDDGTTNS-FEGQGLAFLD 138
            K D  +   +   +W+    T             ++ +   D     S      +    
Sbjct: 66  SKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKR 125

Query: 139 YVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLH 198
            +    +     L V DD    E  +       +    R ++T+R+ +++          
Sbjct: 126 MICNALIDRPNTLFVFDDVVQEETIRWA-----QELRLRCLVTTRDVEISNAASQTCEFI 180

Query: 199 QLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKL 239
           ++  L   E    +    +     + +        E     
Sbjct: 181 EVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 221

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 66  IGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT 125
           + +VG   VGK+TL  R+ ++       +P      +S +     I+ RI+   GV   T
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62

Query: 126 TNSFEGQGL-AFLDYVLQQQLIGKRYLIVLDDFEDMEVC 163
            +  E  G+   L  + +  ++    L VLD    ++  
Sbjct: 63  NDLVERLGIERTLQEIEKADIV----LFVLDASSPLDEE 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	100.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.25
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.16
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.14
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.11
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.11
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.07
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.07
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.07
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.05
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.05
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.04
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.03
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.02
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.01
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.99
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.95
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.95
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.94
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.93
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.89
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.79
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.76
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.74
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.74
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.74
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.69
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.69
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.68
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.67
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.67
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.66
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.64
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.64
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.61
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.6
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.59
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.54
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.5
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.49
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.49
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.37
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.16
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.96
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.71
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.38
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.32
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.3
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.3
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.29
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.26
d1okkd2	207	GTPase domain of the signal recognition particle r	97.24
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.24
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.24
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.22
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.22
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.19
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.17
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.15
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.13
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.11
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.05
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.01
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.01
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.99
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.92
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.91
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.9
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.89
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.89
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.83
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.82
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.78
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.71
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.67
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.66
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.61
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.57
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.55
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.54
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.48
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.36
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.2
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.18
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.13
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.13
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.11
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.11
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.09
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.05
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.02
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.99
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.98
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.95
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.94
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.93
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.92
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.92
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.85
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.85
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.82
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	95.8
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.77
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.76
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.75
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.74
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.72
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.66
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.59
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.56
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.54
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.52
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.46
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.23
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.22
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.09
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.08
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.99
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.98
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.97
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.92
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.89
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.85
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.75
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.74
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.73
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.71
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.62
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.57
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.56
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.49
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.47
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.46
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.39
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.34
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.32
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.32
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.3
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.22
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.2
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.18
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.14
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.12
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.07
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.03
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.98
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.97
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.94
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.92
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.89
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.88
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.85
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.84
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.82
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.81
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.81
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.76
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.76
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.74
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.72
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.68
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.6
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.6
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.55
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.55
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.5
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.49
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.49
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.45
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.43
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.36
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.33
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.3
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.24
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.23
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.22
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.17
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.08
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.05
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.05
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.02
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.99
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.91
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.81
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.8
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.78
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.71
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.7
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.69
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.63
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.6
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.57
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.54
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.51
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.29
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.28
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.18
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.96
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.92
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.77
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.64
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.34
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.24
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.94
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.16
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.1
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	89.56
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.54
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	89.16
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.16
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.03
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.8
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.78
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	88.63
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.1
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.55
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.5
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.46
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.55
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.37
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.36
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.35
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.63
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	85.19
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	84.86
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	84.75
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	84.04
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	82.98

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.7e-36  Score=278.77  Aligned_cols=247  Identities=13%  Similarity=0.096  Sum_probs=183.7

Q ss_pred             CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC--CCccccceEEEEecCCcccHHHHHH
Q 015891           36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~~~~v~~v~~~~~~~~~~~  113 (398)
                      +...++||+.++++|.++|... .+...++|+|+||||+||||||+++|++..  ...+|+.++|++ +++..+...+..
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~-~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~-vs~~~~~~~l~~   95 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAPKSTFDL   95 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCSTTHHHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhc-cCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEE-ecCCCCHHHHHH
Confidence            3466889999999999999763 445688999999999999999999997633  566799999999 887776554443


Q ss_pred             ---HHHHHcCCCCCCCCCc--CCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHH
Q 015891          114 ---RILKRLGVDDGTTNSF--EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLT  188 (398)
Q Consensus       114 ---~il~~l~~~~~~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~  188 (398)
                         .++..++.......+.  ...........+...+.++++|+||||+|+.++++.+.     ..+|+||||||+.+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~-----~~~srilvTTR~~~v~  170 (277)
T d2a5yb3          96 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ-----ELRLRCLVTTRDVEIS  170 (277)
T ss_dssp             HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-----HTTCEEEEEESBGGGG
T ss_pred             HHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc-----ccCceEEEEeehHHHH
Confidence               4444444333221111  12333334456778889999999999999998777553     2489999999999999


Q ss_pred             HHhcCCCceEEcCCCCChhHHHHHHHh-hhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCc
Q 015891          189 TEMVGEENLHQLQPLSDQESCWLIYRD-SVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENT  267 (398)
Q Consensus       189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~  267 (398)
                      ..+....+.|+|++|+. ++++.||.+ +++...   .+...+.+++|+++|+|+||||+.          +|+.+.  .
T Consensus       171 ~~~~~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~---~~~~~~~~~~iv~~c~GlPLAl~~----------ig~~l~--~  234 (277)
T d2a5yb3         171 NAASQTCEFIEVTSLEI-DECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMM----------FFKSCE--P  234 (277)
T ss_dssp             GGCCSCEEEEECCCCCH-HHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHH----------HHTTCC--S
T ss_pred             HhcCCCCceEECCCCCH-HHHHHHHHHHhCCccC---chhhHHHHHHHHHHhCCCHHHHHH----------HHHHhc--c
Confidence            88644557899999999 678888876 444322   234466889999999999999777          677774  4


Q ss_pred             hhHHhHHHHHhhhccCCCCCCcchhhhhhHHHHHHHHH--hhhc
Q 015891          268 KLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIE--EKRA  309 (398)
Q Consensus       268 ~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~sy~~l~~--e~cf  309 (398)
                      ++++.|.+..+.+..-....+..    +++.||+.|+.  ..||
T Consensus       235 k~~~~~~~~~~~L~~~~~~~v~~----il~~sY~~L~~~lk~c~  274 (277)
T d2a5yb3         235 KTFEKMAQLNNKLESRGLVGVEC----ITPYSYKSLAMALQRCV  274 (277)
T ss_dssp             SSHHHHHHHHHHHHHHCSSTTCC----CSSSSSSSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCcHHHHHH----HHHHHHhcccHHHHHHH
Confidence            58889998888776433444555    89999999998  3366

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.25  E-value=2.3e-12  Score=115.85  Aligned_cols=193  Identities=18%  Similarity=0.215  Sum_probs=106.1

Q ss_pred             CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-----CcccHHH
Q 015891           36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-----GQKTAES  110 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-----~~~~~~~  110 (398)
                      +++.||||++++++|.+.        ..+.+.|+|++|+|||+|++++.+.  ....+   .|+. +.     .......
T Consensus        10 ~~~~f~GR~~el~~l~~~--------~~~~i~i~G~~G~GKTsLl~~~~~~--~~~~~---~~i~-~~~~~~~~~~~~~~   75 (283)
T d2fnaa2          10 NRKDFFDREKEIEKLKGL--------RAPITLVLGLRRTGKSSIIKIGINE--LNLPY---IYLD-LRKFEERNYISYKD   75 (283)
T ss_dssp             SGGGSCCCHHHHHHHHHT--------CSSEEEEEESTTSSHHHHHHHHHHH--HTCCE---EEEE-GGGGTTCSCCCHHH
T ss_pred             ChhhCCChHHHHHHHHhc--------cCCEEEEEcCCCCcHHHHHHHHHHH--CCCCe---EEEE-eccccccccccHHH
Confidence            468999999999998763        2367899999999999999999876  33322   3333 21     1122222


Q ss_pred             HHHHHHHH--------------cCCCCC----------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------
Q 015891          111 IVKRILKR--------------LGVDDG----------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------  160 (398)
Q Consensus       111 ~~~~il~~--------------l~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------  160 (398)
                      +...+...              +.....          ................+. ....++.++++|++...      
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~i~id~~~~~~~~~~~  154 (283)
T d2fnaa2          76 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFE-QASKDNVIIVLDEAQELVKLRGV  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHH-HTCSSCEEEEEETGGGGGGCTTC
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHH-hhcccccccccchhhhhcccchH
Confidence            22222211              111000          000000122222222221 23467899999998632      


Q ss_pred             HHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC-----------CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHH
Q 015891          161 EVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG-----------EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQAR  229 (398)
Q Consensus       161 ~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~-----------~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~  229 (398)
                      .....+............+++.+.......+..           ....+.|+|++. +++..++.+.+.......+    
T Consensus       155 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~-~e~~~~l~~~~~~~~~~~~----  229 (283)
T d2fnaa2         155 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR-EEAIEFLRRGFQEADIDFK----  229 (283)
T ss_dssp             CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCH-HHHHHHHHHHHHHHTCCCC----
T ss_pred             HHHHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCH-HHHHHHHHhhhhhcCCCHH----
Confidence            222233333322345556666665544333211           235688999999 6677777765543222211    


Q ss_pred             HHHHHHHHhcCCCchhhhcc
Q 015891          230 KDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       230 ~~~~~I~~~c~GlPlai~~~  249 (398)
                       ..++|++.++|.|..+..+
T Consensus       230 -~~~~i~~~~~G~P~~L~~~  248 (283)
T d2fnaa2         230 -DYEVVYEKIGGIPGWLTYF  248 (283)
T ss_dssp             -CHHHHHHHHCSCHHHHHHH
T ss_pred             -HHHHHHHHhCCCHHHHHHH
Confidence             3568899999999876654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.1e-11  Score=104.83  Aligned_cols=152  Identities=13%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCC------------CC------c----cccc---eEEEEecCC------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPD------------VK------T----QFVP---RIWVCTMSG------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~------------~~------~----~F~~---~~~v~~v~~------------  104 (398)
                      +-.+++|+|++|+|||||++.+..-..            +.      .    -|+.   ..+.+ +.+            
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t-v~eni~~~~~~~~~~  103 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS-VAENMSFGLKLAGAK  103 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchh-HHHHHHHHHHHcCCC
Confidence            456899999999999999999953210            10      0    0100   00111 111            


Q ss_pred             cccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891          105 QKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER  177 (398)
Q Consensus       105 ~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~  177 (398)
                      .....+...++++.+++.... ..+.+.+++++++..+++.|..+|-+|++|++.   |......+...+.   ...|.+
T Consensus       104 ~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~t  183 (232)
T d2awna2         104 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT  183 (232)
T ss_dssp             -CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE
T ss_pred             HHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCE
Confidence            122345577888888886532 334458999999999999999999999999999   4433333333222   345889


Q ss_pred             EEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          178 LIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       178 IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      ||++||+.+.+..+++...++.=+.+-......++|.
T Consensus       184 ii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         184 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            9999999998888754433333333333233444543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=2.8e-11  Score=105.49  Aligned_cols=153  Identities=12%  Similarity=0.072  Sum_probs=95.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCC------------C---ccccceEEEE-------ecC--------------Cc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV------------K---TQFVPRIWVC-------TMS--------------GQ  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~------------~---~~F~~~~~v~-------~v~--------------~~  105 (398)
                      .-.+++|+|++|+|||||++.+..-.+-            .   ..-..+-++.       +.+              ..
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~  110 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK  110 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCH
Confidence            4568999999999999999999543110            0   0000011110       000              00


Q ss_pred             ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891          106 KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL  178 (398)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I  178 (398)
                      ....+...++++.+++... ...+...+++++++..+++.|..+|-+|+||++.   |......+...+.   ...|.+|
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~ti  190 (239)
T d1v43a3         111 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT  190 (239)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence            1233456778888888763 3334558999999999999999999999999999   4433333322222   2348899


Q ss_pred             EEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          179 IITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       179 IiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      |++||+...+..+++...++.=+.+-......++|.
T Consensus       191 i~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  226 (239)
T d1v43a3         191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  226 (239)
T ss_dssp             EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999998888754433333333333233445553

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.11  E-value=2.7e-10  Score=98.75  Aligned_cols=87  Identities=13%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             HHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891          111 IVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS  182 (398)
Q Consensus       111 ~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT  182 (398)
                      ...++++.+++...  ...+...+++++++..++++|..+|-+|++|++.   |......+...+.   ...|.+||++|
T Consensus       124 ~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vT  203 (230)
T d1l2ta_         124 RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT  203 (230)
T ss_dssp             HHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             HHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEC
Confidence            34566677777542  3345568999999999999999999999999999   4433333333322   34589999999


Q ss_pred             CChHHHHHhcCCCceEEc
Q 015891          183 RNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       183 R~~~v~~~~~~~~~~~~l  200 (398)
                      |+.+++. ++  ++++.+
T Consensus       204 Hd~~~a~-~~--drv~~m  218 (230)
T d1l2ta_         204 HDINVAR-FG--ERIIYL  218 (230)
T ss_dssp             SCHHHHT-TS--SEEEEE
T ss_pred             CCHHHHH-hC--CEEEEE
Confidence            9999875 43  444444

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.11  E-value=1.2e-10  Score=101.59  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc--------eEE-------EEecCCc------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP--------RIW-------VCTMSGQ------------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~--------~~~-------v~~v~~~------------------  105 (398)
                      .-.+++|+|++|+|||||++.++.-..-..   .|+.        ..+       +.++.++                  
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~  107 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK  107 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHH
Confidence            346899999999999999999965311000   0000        000       1111111                  


Q ss_pred             ------ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891          106 ------KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R  172 (398)
Q Consensus       106 ------~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~  172 (398)
                            ....+...++++.+++... ...+.+.+++++++..++++|..+|-+|++|++.   |......+...+.   .
T Consensus       108 ~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~  187 (240)
T d1g2912         108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR  187 (240)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHh
Confidence                  1123346778888887653 3334558999999999999999999999999999   4433333333332   2


Q ss_pred             CCCCEEEEEeCChHHHHHhcCC
Q 015891          173 GYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ..|.+||++||+.+.+..+++.
T Consensus       188 ~~g~tvi~vTHd~~~~~~~~dr  209 (240)
T d1g2912         188 QLGVTTIYVTHDQVEAMTMGDR  209 (240)
T ss_dssp             HHTCEEEEEESCHHHHHHHCSE
T ss_pred             ccCCEEEEEcCCHHHHHHhCCE
Confidence            3489999999999988876544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.07  E-value=2.4e-10  Score=99.44  Aligned_cols=147  Identities=13%  Similarity=0.130  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE---------------ecCC----------------------cc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC---------------TMSG----------------------QK  106 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~---------------~v~~----------------------~~  106 (398)
                      .+++|+|++|+|||||++.++.-..   .-.+.+++.               ++.+                      ..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            4788999999999999999964310   001111110               0111                      11


Q ss_pred             cHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEE
Q 015891          107 TAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLI  179 (398)
Q Consensus       107 ~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~II  179 (398)
                      ...+...++++.+++.... ..+...+++++++..+++++..+|-+|+||++.   |......+...+.   ...|..||
T Consensus       102 ~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi  181 (240)
T d2onka1         102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL  181 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            2335577888888887643 334458999999999999999999999999999   4433333333322   23478899


Q ss_pred             EEeCChHHHHHhcCCCceEEcCCCCChhHHHHHH
Q 015891          180 ITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIY  213 (398)
Q Consensus       180 iTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~  213 (398)
                      ++||+.+.+..+++...++.-+.+-......+++
T Consensus       182 ~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             EEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence            9999988887765443333323333223344444

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=5.3e-10  Score=97.44  Aligned_cols=133  Identities=14%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccceE--------------EEEecCC--------------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPRI--------------WVCTMSG--------------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~--------------~v~~v~~--------------------  104 (398)
                      .-.+++|+|++|+|||||++.+..-.....   .|+..-              -+.++.+                    
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~  109 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL  109 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHH
Confidence            457899999999999999999954311100   000000              0111111                    


Q ss_pred             ----cccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891          105 ----QKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG  173 (398)
Q Consensus       105 ----~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~  173 (398)
                          .....+...++++.+++..... .+...+++++++..++++|..+|-+|++|++.   |......+...+.   ..
T Consensus       110 ~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~  189 (240)
T d3dhwc1         110 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR  189 (240)
T ss_dssp             TTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhc
Confidence                1123455678888888876433 34458999999999999999999999999998   4433333333332   23


Q ss_pred             CCCEEEEEeCChHHHHHhcCC
Q 015891          174 YGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       174 ~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      .|.+||++||+..++..+++.
T Consensus       190 ~g~tvi~vTHdl~~~~~~~dr  210 (240)
T d3dhwc1         190 LGLTILLITHEMDVVKRICDC  210 (240)
T ss_dssp             HCCEEEEEBSCHHHHHHHCSE
T ss_pred             cCCEEEEEcCCHHHHHHhCCE
Confidence            489999999999988876543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=6.7e-10  Score=96.79  Aligned_cols=178  Identities=16%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +++||.++.++.|..++..    .....+.++|++|+||||+|+.+++.  +.. .+.......+.+.............
T Consensus        14 ~divg~~~~~~~L~~~i~~----~~~~~lLl~Gp~G~GKttl~~~la~~--l~~~~~~~~~~e~~~~~~~~~~~~~~~~~   87 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVVRNQIK   87 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             HHccCcHHHHHHHHHHHHc----CCCCeEEEECCCCCChhHHHHHHHHH--hhcCCCcceeEEecccccCCeeeeecchh
Confidence            6799999999999999965    33444779999999999999999876  221 1222222221333322222111111


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhc
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMV  192 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~  192 (398)
                      ......                    .....+..++|+|+++.  ......+...+. ....+.++++|... .+...+.
T Consensus        88 ~~~~~~--------------------~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~  147 (227)
T d1sxjc2          88 DFASTR--------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL  147 (227)
T ss_dssp             HHHHBC--------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred             hccccc--------------------cccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHH
Confidence            110000                    00112345899999984  344455555554 44577777777653 3444444


Q ss_pred             CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          193 GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       193 ~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      .....+++.+++. ++...++.+.........++   +..+.|++.+.|-...
T Consensus       148 sr~~~i~~~~~~~-~~i~~~l~~I~~~e~i~i~~---~~l~~i~~~s~Gd~R~  196 (227)
T d1sxjc2         148 SQCTRFRFQPLPQ-EAIERRIANVLVHEKLKLSP---NAEKALIELSNGDMRR  196 (227)
T ss_dssp             TTSEEEECCCCCH-HHHHHHHHHHHHTTTCCBCH---HHHHHHHHHHTTCHHH
T ss_pred             HHHhhhccccccc-cccccccccccccccccCCH---HHHHHHHHHcCCcHHH
Confidence            5677899999999 66777777766554444433   2567788888886543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.05  E-value=3.6e-10  Score=98.51  Aligned_cols=152  Identities=18%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---ccc-----------------ceEEEEe---cCC--------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFV-----------------PRIWVCT---MSG--------------  104 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~-----------------~~~~v~~---v~~--------------  104 (398)
                      .-.+++|.|++|+|||||++.+..-..-..   .|+                 .+-++..   +-.              
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~  109 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN  109 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHh
Confidence            346899999999999999999954210000   000                 0111100   000              


Q ss_pred             ----cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH----HHHHHHHhHcCC
Q 015891          105 ----QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM----EVCKHLSKVLPR  172 (398)
Q Consensus       105 ----~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~----~~~~~l~~~l~~  172 (398)
                          .....+...++++.+++... ...+.+.+++++++..++++|..+|-+|++|++.   |.    ..++.+.. +..
T Consensus       110 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~-l~~  188 (242)
T d1oxxk2         110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQS  188 (242)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH-HHH
T ss_pred             hcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHH-HHh
Confidence                01233457788899988653 3344558999999999999999999999999998   33    22223322 222


Q ss_pred             CCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          173 GYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      ..|.+||++||+.+.+..+++...++.=+.+-......++|.
T Consensus       189 ~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            348899999999888877644333333333333233445553

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.05  E-value=3.6e-10  Score=97.72  Aligned_cols=133  Identities=14%  Similarity=0.118  Sum_probs=86.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---ccc------------ceEEEEe---------cCC---------cccH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFV------------PRIWVCT---------MSG---------QKTA  108 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~------------~~~~v~~---------v~~---------~~~~  108 (398)
                      .-.+++|+|++|+|||||++.+..-.....   .|+            ..-++..         +..         ....
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~  104 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccH
Confidence            456899999999999999999965311000   000            0111100         000         0111


Q ss_pred             HHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891          109 ESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT  181 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT  181 (398)
                      .+...++++.+++..... ...+.+++++++..++++|..+|-+|+||++.   |......+...+.   ...|.+||++
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v  184 (229)
T d3d31a2         105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (229)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            234667788888776433 34458999999999999999999999999999   4433333333322   2358899999


Q ss_pred             eCChHHHHHhcCC
Q 015891          182 SRNEKLTTEMVGE  194 (398)
Q Consensus       182 TR~~~v~~~~~~~  194 (398)
                      ||+...+..+++.
T Consensus       185 tHd~~~~~~~~dr  197 (229)
T d3d31a2         185 THDQTEARIMADR  197 (229)
T ss_dssp             ESCHHHHHHHCSE
T ss_pred             cCCHHHHHHhCCE
Confidence            9999888776443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=4.5e-10  Score=97.82  Aligned_cols=182  Identities=16%  Similarity=0.235  Sum_probs=110.7

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +++||.+..++.|..++..    .....+.++|++|+||||+|+.+++.  +...+ ...++..+.+.......+...+.
T Consensus        15 ~d~ig~~~~~~~L~~~~~~----~~~~~~ll~Gp~G~GKTt~a~~la~~--l~~~~~~~~~~~~n~~~~~~~~~i~~~~~   88 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDVVRNQIK   88 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             HHhcCCHHHHHHHHHHHHc----CCCCeEEEECCCCCCchhhHHHHHHH--HhccccccccccccccccCCceehhhHHH
Confidence            6799999999999999975    34445789999999999999999876  33221 12222222444433333222222


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhc
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMV  192 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~  192 (398)
                      ........ .                  ...+..++|+|+++.  ......+...+. ....+++++||.+. .+...+.
T Consensus        89 ~~~~~~~~-~------------------~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~  149 (224)
T d1sxjb2          89 HFAQKKLH-L------------------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ  149 (224)
T ss_dssp             HHHHBCCC-C------------------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred             HHHHhhcc-C------------------CCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHH
Confidence            11110000 0                  013456999999993  344444444443 34466666666653 3434444


Q ss_pred             CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          193 GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       193 ~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .....+++.+++. ++...++.+.....+...++   +....|++.|+|-+..+..
T Consensus       150 sr~~~i~~~~~~~-~~i~~~l~~i~~~e~~~i~~---~~l~~I~~~s~Gd~R~ai~  201 (224)
T d1sxjb2         150 SQCAILRYSKLSD-EDVLKRLLQIIKLEDVKYTN---DGLEAIIFTAEGDMRQAIN  201 (224)
T ss_dssp             TTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhhhcccch-hhhHHHHHHHHHhcccCCCH---HHHHHHHHHcCCcHHHHHH
Confidence            5677899999999 66777777654433333333   2678899999998876443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.03  E-value=3.6e-08  Score=87.43  Aligned_cols=172  Identities=16%  Similarity=0.234  Sum_probs=106.1

Q ss_pred             CCCCcccchhhHHHHHHHHhcc--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHH
Q 015891           36 PPANVHGFANEELHLQKLLSNR--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIV  112 (398)
Q Consensus        36 ~~~~~vGR~~~~~~l~~~L~~~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~  112 (398)
                      -|..++||+.+++.|.++|...  ......+.+.|+|++|+||||+|+.+++.  +...... .+++. ...........
T Consensus        14 ~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~--l~~~~~~~~~~~~-~~~~~~~~~~~   90 (276)
T d1fnna2          14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYIN-GFIYRNFTAII   90 (276)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEE-TTTCCSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHH--HhcccCCcEEEec-chhhhhhhhhh
Confidence            3466999999999999998641  13355678999999999999999999887  4333332 34444 56667777888


Q ss_pred             HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCH--HHHHHHHhHcC-----CCCCCEEEEEeC
Q 015891          113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDM--EVCKHLSKVLP-----RGYGERLIITSR  183 (398)
Q Consensus       113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~--~~~~~l~~~l~-----~~~gs~IIiTTR  183 (398)
                      ..+...++......    ..........+...+..  ...++++|++++.  .....+...+.     ......+|.++.
T Consensus        91 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  166 (276)
T d1fnna2          91 GEIARSLNIPFPRR----GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH  166 (276)
T ss_dssp             HHHHHHTTCCCCSS----CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred             hhhHHhhhhhhhhh----ccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCC
Confidence            88888876654322    13334444444444433  4677788888742  22222222221     233445666666


Q ss_pred             ChHHHHHhc------CCCceEEcCCCCChhHHHHHHHh
Q 015891          184 NEKLTTEMV------GEENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       184 ~~~v~~~~~------~~~~~~~l~~L~~~e~~~~l~~~  215 (398)
                      .......+.      .....+.+.+.+. ++.+.++.+
T Consensus       167 ~~~~~~~~~~~~~~r~~~~~i~~~~~~~-~e~~~il~~  203 (276)
T d1fnna2         167 NDAVLNNLDPSTRGIMGKYVIRFSPYTK-DQIFDILLD  203 (276)
T ss_dssp             STHHHHTSCHHHHHHHTTCEEECCCCBH-HHHHHHHHH
T ss_pred             chhhhhhcchhhhhhhcchhccccchhH-HHHHHHHHH
Confidence            544332210      1235678989988 667776655

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=5.6e-10  Score=97.80  Aligned_cols=189  Identities=12%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc---ccceEEEEecCCcccHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ---FVPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~v~~v~~~~~~~~~~~  113 (398)
                      -++++|.+..++.|..++..    .....+.++|++|+||||+++.+++.  +...   ......+. .+..........
T Consensus        11 ~~diig~~~~~~~l~~~i~~----~~~~~lll~Gp~G~GKTtl~~~i~~~--l~~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (237)
T d1sxjd2          11 LDEVTAQDHAVTVLKKTLKS----ANLPHMLFYGPPGTGKTSTILALTKE--LYGPDLMKSRILELN-ASDERGISIVRE   83 (237)
T ss_dssp             TTTCCSCCTTHHHHHHHTTC----TTCCCEEEECSTTSSHHHHHHHHHHH--HHHHHHHTTSEEEEC-SSSCCCHHHHTT
T ss_pred             HHHccCcHHHHHHHHHHHHc----CCCCeEEEECCCCCChHHHHHHHHHH--HcCCcccccchhhee-ccccccchHHHH
Confidence            36789999999999999964    34455889999999999999999876  3211   11122333 333333322222


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHH
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTT  189 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~  189 (398)
                      .+-.........      ..    ...+......+.-++|+||++.  ......+...+. ....+.+|+|+.+. .+..
T Consensus        84 ~~~~~~~~~~~~------~~----~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~  153 (237)
T d1sxjd2          84 KVKNFARLTVSK------PS----KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID  153 (237)
T ss_dssp             HHHHHHHSCCCC------CC----TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred             HHHHHhhhhhhh------hh----HHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccc
Confidence            211111111000      00    0112222233455899999984  344444444433 34456666666543 2333


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      .+......+++.+++. ++...++.+.+.......++   +..+.|++.++|-...+
T Consensus       154 ~l~sr~~~i~f~~~~~-~~~~~~L~~i~~~e~i~i~~---~~l~~ia~~s~gd~R~a  206 (237)
T d1sxjd2         154 PLASQCSKFRFKALDA-SNAIDRLRFISEQENVKCDD---GVLERILDISAGDLRRG  206 (237)
T ss_dssp             HHHHHSEEEECCCCCH-HHHHHHHHHHHHTTTCCCCH---HHHHHHHHHTSSCHHHH
T ss_pred             cccchhhhhccccccc-cccchhhhhhhhhhcCcCCH---HHHHHHHHHcCCCHHHH
Confidence            3323346899999999 66777777766554444443   36778888888866543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=8.4e-10  Score=97.60  Aligned_cols=104  Identities=9%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891          111 IVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR  183 (398)
Q Consensus       111 ~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR  183 (398)
                      ...+++..+++...  ...+...+++++++..++++|..+|-+||+|++.   |......+...+.  ...|.+||++||
T Consensus       128 ~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtH  207 (258)
T d1b0ua_         128 RALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH  207 (258)
T ss_dssp             HHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             HHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeC
Confidence            45567777787652  2334568999999999999999999999999999   4422222222222  234778999999


Q ss_pred             ChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          184 NEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       184 ~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      |.+.+..+++...++.=+.+-......++|.
T Consensus       208 dl~~~~~~adri~vm~~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         208 EMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  238 (258)
T ss_dssp             CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9998887755444444334433233444553

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=1.3e-10  Score=101.66  Aligned_cols=153  Identities=15%  Similarity=0.139  Sum_probs=93.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC------------ccc----cceEEEEecC---Cc-----------------
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK------------TQF----VPRIWVCTMS---GQ-----------------  105 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~------------~~F----~~~~~v~~v~---~~-----------------  105 (398)
                      .-.+++|+|++|+|||||++.+..-....            ...    ....++..-.   ..                 
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~  106 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS  106 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCC
Confidence            45689999999999999999996541100            000    0112221000   01                 


Q ss_pred             -ccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891          106 -KTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL  178 (398)
Q Consensus       106 -~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I  178 (398)
                       .........+++.+++..... .....+.+++++..+++++..++-+++||++.   |......+...+.  ...|.+|
T Consensus       107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~ti  186 (238)
T d1vpla_         107 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI  186 (238)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence             112334566677777654322 23348899999999999999999999999999   4433333333332  2358899


Q ss_pred             EEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891          179 IITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       179 IiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      |+|||+.+.+..+++..-++.=+.+-......+++.
T Consensus       187 i~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         187 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             EEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999998887654433333332333233444443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.95  E-value=7.3e-10  Score=97.07  Aligned_cols=67  Identities=10%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCC
Q 015891          128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGE  194 (398)
Q Consensus       128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~  194 (398)
                      ..+.+++++++..++++|..+|-+|+||++.   |......+...+.  ...|..||++||+...+..+++.
T Consensus       137 ~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~dr  208 (240)
T d1ji0a_         137 GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY  208 (240)
T ss_dssp             SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            3458999999999999999999999999999   4433333332222  23488999999998877776443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4.4e-09  Score=92.34  Aligned_cols=196  Identities=16%  Similarity=0.130  Sum_probs=106.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK  117 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~  117 (398)
                      ++++|.++.++.|..++..   ..-...+.|+|++|+||||+|+.+++..........        ...........+..
T Consensus        12 ~dlig~~~~~~~L~~~i~~---~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~--------~~~~~~~~~~~i~~   80 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--------TPCGVCDNCREIEQ   80 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHT---TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCS--------SCCSCSHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHc---CCCCeeEEEECCCCCcHHHHHHHHHHHhcCcccccc--------CccccchHHHHHHc
Confidence            5789999999999999965   223456889999999999999998654100000000        00000000111111


Q ss_pred             HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHH
Q 015891          118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTT  189 (398)
Q Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~  189 (398)
                      .-..........+....+..+..+....    .++..++|+||++.  .+....|...+. ...++++|++|.+. .+..
T Consensus        81 ~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~  160 (239)
T d1njfa_          81 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  160 (239)
T ss_dssp             TCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred             CCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccCh
Confidence            1000000000000111222221111110    13456999999994  455555666654 34567777777654 3444


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      .+......+.+.+++. ++....+.+.........++   +.+..|++.++|.+..+..
T Consensus       161 ~i~SRc~~i~~~~~~~-~~i~~~l~~i~~~e~~~~~~---~~l~~i~~~s~Gd~R~ain  215 (239)
T d1njfa_         161 TILSRCLQFHLKALDV-EQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALS  215 (239)
T ss_dssp             HHHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHTTTCHHHHHH
T ss_pred             hHhhhhcccccccCcH-HHhhhHHHHHHhhhccCCCH---HHHHHHHHHcCCCHHHHHH
Confidence            4455678899999998 55666666644333333333   3667888899998865443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.94  E-value=2.5e-09  Score=94.54  Aligned_cols=83  Identities=13%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             HHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891          112 VKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE  185 (398)
Q Consensus       112 ~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~  185 (398)
                      ..++++.+++..... .....+++++++..++++|..+|-+|+||++.   |......+...+.  ...|..||++||+.
T Consensus       131 ~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl  210 (254)
T d1g6ha_         131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL  210 (254)
T ss_dssp             HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             HHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence            445666677655332 33458999999999999999999999999999   4433332322221  34589999999998


Q ss_pred             HHHHHhcCC
Q 015891          186 KLTTEMVGE  194 (398)
Q Consensus       186 ~v~~~~~~~  194 (398)
                      +.+..+++.
T Consensus       211 ~~~~~~~Dr  219 (254)
T d1g6ha_         211 DIVLNYIDH  219 (254)
T ss_dssp             STTGGGCSE
T ss_pred             HHHHHhCCE
Confidence            777665443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.1e-09  Score=95.53  Aligned_cols=139  Identities=22%  Similarity=0.251  Sum_probs=87.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc--------------eEEEEecC----------------CcccHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP--------------RIWVCTMS----------------GQKTAE  109 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~--------------~~~v~~v~----------------~~~~~~  109 (398)
                      .-.+++|+|++|+|||||.+.+..-..-+.  .|..              ..++....                ......
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT  103 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHH
Confidence            456899999999999999999976311100  0110              11221000                011224


Q ss_pred             HHHHHHHHHcCCCCCCCC-CcCCCchHHHHHHHHHHHhC-------CCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891          110 SIVKRILKRLGVDDGTTN-SFEGQGLAFLDYVLQQQLIG-------KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE  176 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~-------k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs  176 (398)
                      +.+.+++..+++...... ....+++++++..+++++..       .+-+|+||++.   |......+...+.  ...|.
T Consensus       104 ~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~  183 (231)
T d1l7vc_         104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGL  183 (231)
T ss_dssp             HHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            456777888887654332 33489999999999998864       55899999999   4433333333332  34588


Q ss_pred             EEEEEeCChHHHHHhcCCCceEEc
Q 015891          177 RLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       177 ~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      .||++||+.+.+..+++...+++=
T Consensus       184 tii~vtHdl~~~~~~~dri~vl~~  207 (231)
T d1l7vc_         184 AIVMSSHDLNHTLRHAHRAWLLKG  207 (231)
T ss_dssp             EEEECCCCHHHHHHHCSBCCBEET
T ss_pred             EEEEEeCCHHHHHHHCCEEEEEEC
Confidence            999999998877666555444443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=2.5e-09  Score=93.30  Aligned_cols=178  Identities=15%  Similarity=0.192  Sum_probs=105.6

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccce-EEEEecCCcccHHHHHHH
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVPR-IWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~-~~v~~v~~~~~~~~~~~~  114 (398)
                      -++++|.+..++.|..++..    .....+.|+|++|+||||+|+.+++.  +.. .+... +-+. .+...........
T Consensus        23 ~~diig~~~~~~~l~~~i~~----~~~~~lll~Gp~G~GKTtla~~iak~--l~~~~~~~~~~e~n-~s~~~~~~~~~~~   95 (231)
T d1iqpa2          23 LDDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELN-ASDERGINVIREK   95 (231)
T ss_dssp             TTTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEE-TTCHHHHHTTHHH
T ss_pred             HHHccCcHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHH--HHhcccCCCeeEEe-cCcccchhHHHHH
Confidence            36799999999999999976    34566889999999999999999876  322 12221 1222 2222111111111


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCC-hHHHHH
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRN-EKLTTE  190 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~-~~v~~~  190 (398)
                      +.......                    .....++.++++||++.  ......+...+. ......+|+||.. ..+...
T Consensus        96 ~~~~~~~~--------------------~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~  155 (231)
T d1iqpa2          96 VKEFARTK--------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP  155 (231)
T ss_dssp             HHHHHHSC--------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred             HHHHHhhh--------------------hccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHh
Confidence            11110000                    01124577999999983  344445555544 3334555666544 334344


Q ss_pred             hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      +......+.+.+.+. +.....+++.+.......++   +..+.|++.|+|-...
T Consensus       156 l~sR~~~i~~~~~~~-~~~~~~l~~~~~~e~i~i~~---~~l~~I~~~~~gdiR~  206 (231)
T d1iqpa2         156 IQSRCAIFRFRPLRD-EDIAKRLRYIAENEGLELTE---EGLQAILYIAEGDMRR  206 (231)
T ss_dssp             HHHTEEEEECCCCCH-HHHHHHHHHHHHTTTCEECH---HHHHHHHHHHTTCHHH
T ss_pred             HhCccccccccccch-hhHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHH
Confidence            434556889999888 66777777655544443333   3667888999886554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.2e-09  Score=96.51  Aligned_cols=193  Identities=14%  Similarity=0.171  Sum_probs=99.9

Q ss_pred             CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC----CCccccceEEEEe-----------
Q 015891           37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD----VKTQFVPRIWVCT-----------  101 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~----~~~~F~~~~~v~~-----------  101 (398)
                      -++++|.++..+.|..++..   ......+.|+|++|+||||+|+++++...    ....++...+...           
T Consensus        10 ~~diig~~~~~~~L~~~~~~---~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (252)
T d1sxje2          10 LNALSHNEELTNFLKSLSDQ---PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS   86 (252)
T ss_dssp             GGGCCSCHHHHHHHHTTTTC---TTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred             HHHccCcHHHHHHHHHHHHc---CCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhcc
Confidence            35799999998888888754   22344578999999999999999976410    0111111111100           


Q ss_pred             ------cCC---cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHc
Q 015891          102 ------MSG---QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVL  170 (398)
Q Consensus       102 ------v~~---~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l  170 (398)
                            +..   ......................           ...-......+..++|+|+++.  ......+...+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~  155 (252)
T d1sxje2          87 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-----------FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM  155 (252)
T ss_dssp             CSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred             CCccceeeecccccCCcceeeehhhhhhhhhhhh-----------hhhcccccCCCceEEEeccccccccccchhhhccc
Confidence                  000   0001111222222211111000           0000111123455899999984  34444455455


Q ss_pred             C-CCCCCEEEEEeCChH-HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          171 P-RGYGERLIITSRNEK-LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       171 ~-~~~gs~IIiTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      . ....+++|+||.+.+ +...+.+....+++.+++. ++...++.+.+...+....+  .+..+.|++.+.|.+..+
T Consensus       156 e~~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~-~~~~~~l~~i~~~e~~~~~~--~~~l~~i~~~s~Gd~R~a  230 (252)
T d1sxje2         156 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSD-SEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVS  230 (252)
T ss_dssp             HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHH
T ss_pred             ccccccccceeeeccccchhhhhhcchheeeecccch-hhHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCcHHHH
Confidence            4 445677777776543 2222233456789999998 56777776655332222211  235677888888877553

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6e-08  Score=82.91  Aligned_cols=183  Identities=14%  Similarity=0.117  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC--CCccccceEEEEecCCcccHHHHHHHHHHHcCC
Q 015891           44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVPRIWVCTMSGQKTAESIVKRILKRLGV  121 (398)
Q Consensus        44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~  121 (398)
                      +...+++...+..   ..-...+.++|++|+||||+|+.+++...  .......      .....+..    .+......
T Consensus         8 ~~~~~~l~~~~~~---~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~------~~~~~~~~----~i~~~~~~   74 (207)
T d1a5ta2           8 RPDFEKLVASYQA---GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS------CGHCRGCQ----LMQAGTHP   74 (207)
T ss_dssp             HHHHHHHHHHHHT---TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC------CSCSHHHH----HHHHTCCT
T ss_pred             HHHHHHHHHHHHc---CCcCeEEEEECCCCCcHHHHHHHHHHhccccccccccc------ccccchhh----hhhhcccc
Confidence            4456777777754   22355699999999999999998876410  0000000      00011111    11111000


Q ss_pred             CCCC---CCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHH
Q 015891          122 DDGT---TNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNE-KLTT  189 (398)
Q Consensus       122 ~~~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~  189 (398)
                      ....   .........+..+. +...+     .+++-++|+||++  +.+....|...+. ...++.+|+||++. .+..
T Consensus        75 ~~~~~~~~~~~~~i~~~~ir~-l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~  153 (207)
T d1a5ta2          75 DYYTLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLA  153 (207)
T ss_dssp             TEEEECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCH
T ss_pred             ccchhhhhhcccccccchhhH-HhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhh
Confidence            0000   00000112222222 22222     2346699999999  4566666666665 34577878777775 3555


Q ss_pred             HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891          190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF  249 (398)
Q Consensus       190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~  249 (398)
                      .+......+.+.+++. ++....+.+...-.        .+.+..|++.++|.|..+..+
T Consensus       154 tI~SRc~~i~~~~~~~-~~~~~~L~~~~~~~--------~~~~~~i~~~s~Gs~r~al~~  204 (207)
T d1a5ta2         154 TLRSRCRLHYLAPPPE-QYAVTWLSREVTMS--------QDALLAALRLSAGSPGAALAL  204 (207)
T ss_dssp             HHHTTSEEEECCCCCH-HHHHHHHHHHCCCC--------HHHHHHHHHHTTTCHHHHHHT
T ss_pred             hhcceeEEEecCCCCH-HHHHHHHHHcCCCC--------HHHHHHHHHHcCCCHHHHHHH
Confidence            5556678999999998 66666666543211        236677888888888765554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.76  E-value=1.3e-08  Score=89.09  Aligned_cols=65  Identities=11%  Similarity=0.191  Sum_probs=50.0

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++..+++++..++-++|||++.+.       ..++.+....   .+.+||++||+.+.+..+   ++++.|
T Consensus       139 ~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~---~~~Tvi~itH~l~~~~~~---D~i~vl  210 (242)
T d1mv5a_         139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTIVDA---DKIYFI  210 (242)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHHHHC---SEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc---CCCEEEEEECCHHHHHhC---CEEEEE
Confidence            4799999999999999999999999999832       4444554432   378999999998877653   455554

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.74  E-value=2.1e-08  Score=88.28  Aligned_cols=69  Identities=10%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++++..++-++|||++.   |......+...+. -..+.+||++||+...+..   +++++.|
T Consensus       151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~---~D~v~vl  223 (253)
T d3b60a1         151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ---ADEIVVV  223 (253)
T ss_dssp             CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTT---CSEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh---CCEEEEE
Confidence            458999999999999999999999999999   4433333333332 1247789999999876653   3455555

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-08  Score=88.91  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=50.7

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ...+++++++..+++++..++-++||||+.   |......+...+.   ...+.+||++||+...+..   .++++.|
T Consensus       150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~---aDrI~vl  224 (251)
T d1jj7a_         150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ---ADHILFL  224 (251)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT---CSEEEEE
T ss_pred             ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHh---CCEEEEE
Confidence            358999999999999999999999999999   4433333333332   2347889999999887754   2455544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=3.3e-08  Score=86.24  Aligned_cols=70  Identities=11%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      ...+++++++..+++++..++-++|||++.   |......+...+. ..++.++|++||+.+.+..   .++++.|+
T Consensus       138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~---~D~i~vl~  211 (241)
T d2pmka1         138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN---ADRIIVME  211 (241)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT---SSEEEEEE
T ss_pred             CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHh---CCEEEEEE
Confidence            358999999999999999999999999999   4433333333332 2347789999999876654   34555543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=6.4e-08  Score=85.68  Aligned_cols=177  Identities=11%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      ++++|.++.++.|.+.+..         ..+-...+-+.++||+|+|||++|+++++.  ...+|   +.+. .+     
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~--~~~~~---~~i~-~~-----   72 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLIN-GP-----   72 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHH--TTCEE---EEEC-HH-----
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHH--hCCeE---EEEE-ch-----
Confidence            4688999999998886431         112234667999999999999999999986  32222   1121 11     


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---C
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---R  172 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---~  172 (398)
                               .+....      ...........+..+-..++.+|++||++..             .....+...+.   .
T Consensus        73 ---------~l~~~~------~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~  137 (258)
T d1e32a2          73 ---------EIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ  137 (258)
T ss_dssp             ---------HHTTSC------TTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCC
T ss_pred             ---------hhcccc------cccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccc
Confidence                     000000      0112233334445555678999999999832             11122222221   2


Q ss_pred             CCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          173 GYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       173 ~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                      ..+.-||.||...+-... +.   .-++.+++++.+. ++...+++..++.....  +.  .....|++.+.|..-+
T Consensus       138 ~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~-~~R~~il~~~l~~~~~~--~~--~~~~~la~~t~G~s~a  209 (258)
T d1e32a2         138 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA-TGRLEILQIHTKNMKLA--DD--VDLEQVANETHGHVGA  209 (258)
T ss_dssp             SSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCH-HHHHHHHHHTTTTSCBC--TT--CCHHHHHHHCTTCCHH
T ss_pred             cCCccEEEeCCCccccchhhhhcccccceeECCCCCH-HHHHHHhhhhccCcccc--cc--cchhhhhhcccCCCHH
Confidence            344556778877643322 21   2467889977776 77888888766543322  11  1356788899887543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=1.8e-08  Score=85.65  Aligned_cols=97  Identities=21%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCC-----------cccc-ceEEEEe---cCCcccHH----------------H
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-----------TQFV-PRIWVCT---MSGQKTAE----------------S  110 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-----------~~F~-~~~~v~~---v~~~~~~~----------------~  110 (398)
                      .-.+++|+|++|+|||||++.++.-..-.           ..+. ...|+..   +.......                .
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~  105 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN  105 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHH
Confidence            34689999999999999999997641100           0011 1222220   01111211                1


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC
Q 015891          111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE  158 (398)
Q Consensus       111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~  158 (398)
                      -..+.++.++...-.....+.+.+++++..+++.+...+-+++||++.
T Consensus       106 ~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_         106 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             HHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            223445555543322333458999999999999999999999999998

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=3.6e-08  Score=86.79  Aligned_cols=191  Identities=16%  Similarity=0.171  Sum_probs=103.1

Q ss_pred             CCCcccchhhHHHHHHHHhc-------------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC
Q 015891           37 PANVHGFANEELHLQKLLSN-------------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS  103 (398)
Q Consensus        37 ~~~~vGR~~~~~~l~~~L~~-------------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~  103 (398)
                      -++++|.+..+++|.++|..             .......+.+.++||+|+||||+|+++++.  ....   ..++. .+
T Consensus        13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~--~~~~---~~~~~-~~   86 (253)
T d1sxja2          13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LGYD---ILEQN-AS   86 (253)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TTCE---EEEEC-TT
T ss_pred             HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHH--HHhh---hhccc-cc
Confidence            36799999999999998853             112334578999999999999999999987  3222   23443 44


Q ss_pred             CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----HHHHHHHhHcCCCCCCEE
Q 015891          104 GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----EVCKHLSKVLPRGYGERL  178 (398)
Q Consensus       104 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~gs~I  178 (398)
                      ...+... +.......-.......... .      .........+..++++|+++..     ..+..+...... ....+
T Consensus        87 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~-~~~~i  157 (253)
T d1sxja2          87 DVRSKTL-LNAGVKNALDNMSVVGYFK-H------NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPL  157 (253)
T ss_dssp             SCCCHHH-HHHTGGGGTTBCCSTTTTT-C----------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCE
T ss_pred             cchhhHH-HHHHHHHHhhcchhhhhhh-h------hhhcccccccceEEEeeeccccccchhhhhHHHhhhhcc-ccccc
Confidence            3333222 2222222111110000000 0      0001112345678999998722     222222222211 22344


Q ss_pred             EEEeCC--hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891          179 IITSRN--EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA  246 (398)
Q Consensus       179 IiTTR~--~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai  246 (398)
                      ++|+.+  ......+......+++.+++. ++....+.+.....+...++   +...+|++.++|-...+
T Consensus       158 i~i~~~~~~~~~~~l~~~~~~i~f~~~~~-~~i~~~l~~i~~~e~i~i~~---~~l~~i~~~s~GDiR~a  223 (253)
T d1sxja2         158 ILICNERNLPKMRPFDRVCLDIQFRRPDA-NSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQV  223 (253)
T ss_dssp             EEEESCTTSSTTGGGTTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHH
T ss_pred             ccccccccccccccccceeeeeeccccch-hHHHHHHHHHHHHhCCCCCH---HHHHHHHHhCCCcHHHH
Confidence            444432  223333445567899999998 66777777654332222223   25678888888866443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.67  E-value=2.5e-07  Score=82.21  Aligned_cols=174  Identities=19%  Similarity=0.228  Sum_probs=99.8

Q ss_pred             CCCCCcccchhhHHHHHHHHhc---cC--CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc------ccceEEEEecC
Q 015891           35 KPPANVHGFANEELHLQKLLSN---RG--TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ------FVPRIWVCTMS  103 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~---~~--~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~~v~~v~  103 (398)
                      .-|+.++||+.+++.|.+.+..   .+  .+....++.|+|++|+|||++++.+++.  +...      .....++. ..
T Consensus        13 ~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~--l~~~~~~~~~~~~~~~~~-~~   89 (287)
T d1w5sa2          13 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVN-AF   89 (287)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEE-GG
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHH--HHhhcccccCCceeeeec-cc
Confidence            3457899999999999887643   11  1222335677899999999999999876  3221      12234555 55


Q ss_pred             CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCCcEEEecCCCCH--------HHHHHH---HhHc
Q 015891          104 GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFEDM--------EVCKHL---SKVL  170 (398)
Q Consensus       104 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~~--------~~~~~l---~~~l  170 (398)
                      ...........+...++......    ..........+....  .....++++|+++..        +....+   ...+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l  165 (287)
T d1w5sa2          90 NAPNLYTILSLIVRQTGYPIQVR----GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI  165 (287)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCT----TCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred             cccchhhHHHHHhhhcccccccc----cchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhc
Confidence            66667777777777776544321    123333344444444  345678888988732        222222   2222


Q ss_pred             C---CCCCCEEEEEeCChHHHH-------H-hcCCCceEEcCCCCChhHHHHHHHhh
Q 015891          171 P---RGYGERLIITSRNEKLTT-------E-MVGEENLHQLQPLSDQESCWLIYRDS  216 (398)
Q Consensus       171 ~---~~~gs~IIiTTR~~~v~~-------~-~~~~~~~~~l~~L~~~e~~~~l~~~~  216 (398)
                      .   ......+|+++.......       . .......+.+++.+. ++...++...
T Consensus       166 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~-~el~~Il~~r  221 (287)
T d1w5sa2         166 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS-RELYTILEQR  221 (287)
T ss_dssp             CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH-HHHHHHHHHH
T ss_pred             chhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcH-HHHHHHHhhh
Confidence            2   122334444443332221       1 112356788999998 6677777753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=3.5e-08  Score=86.78  Aligned_cols=68  Identities=12%  Similarity=0.174  Sum_probs=49.9

Q ss_pred             CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ..+++++++..+++++..++-++||||+.   |......+...+. ...+.++|++||+.+.+..   .++++.|
T Consensus       154 ~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~---~D~ii~l  225 (255)
T d2hyda1         154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH---ADKIVVI  225 (255)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT---CSEEEEE
T ss_pred             CcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh---CCEEEEE
Confidence            47899999999999999999999999999   4444444444443 2346788999999876654   3455544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.7e-07  Score=81.41  Aligned_cols=152  Identities=16%  Similarity=0.183  Sum_probs=91.2

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC---CCCccc-cceEEEEecCCcccHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP---DVKTQF-VPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~~v~~v~~~~~~~~~~~  113 (398)
                      +.++||+++++++...|..    ....-+.|+|++|+|||+++..+++..   .+.... ...+|.-+++.-        
T Consensus        18 d~~igRd~Ei~~l~~iL~r----~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~l--------   85 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------   85 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred             CcccChHHHHHHHHHHHhc----CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechH--------
Confidence            4589999999999999965    344567799999999999999887651   122222 224444312210        


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCCCH-----------HHHHHHHhHcCCCCCCEEEEE
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFEDM-----------EVCKHLSKVLPRGYGERLIIT  181 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~gs~IIiT  181 (398)
                        +.  |..      . ....+.....+...+ ..++.++++||+...           +..+.|.+.+. ...-++|.|
T Consensus        86 --ia--g~~------~-~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIga  153 (268)
T d1r6bx2          86 --LA--GTK------Y-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGS  153 (268)
T ss_dssp             ---C--CCC------C-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEE
T ss_pred             --hc--cCc------c-chhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEe
Confidence              00  000      0 123333333333334 446789999998732           34445555553 346788888


Q ss_pred             eCChHHHHHhc------CCCceEEcCCCCChhHHHHHHH
Q 015891          182 SRNEKLTTEMV------GEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       182 TR~~~v~~~~~------~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      |...++.....      ..-..+.+.+++. ++...++.
T Consensus       154 tT~eey~~~~e~d~al~rrF~~I~V~Eps~-e~t~~IL~  191 (268)
T d1r6bx2         154 TTYQEFSNIFEKDRALARRFQKIDITEPSI-EETVQIIN  191 (268)
T ss_dssp             ECHHHHHCCCCCTTSSGGGEEEEECCCCCH-HHHHHHHH
T ss_pred             CCHHHHHHHHhhcHHHHhhhcccccCCCCH-HHHHHHHH
Confidence            88777665432      1245778888887 54555544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.3e-07  Score=84.44  Aligned_cols=129  Identities=13%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc-eEEEEe--------cC------CcccHHHHHHHHHHHcC--
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP-RIWVCT--------MS------GQKTAESIVKRILKRLG--  120 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~-~~~v~~--------v~------~~~~~~~~~~~il~~l~--  120 (398)
                      ..-.+++|+|++|+|||||++.+..-.....   .++. +.++..        +.      .... ......+++...  
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~  138 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYD-EYRYKSVVKACQLQ  138 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCC-HHHHHHHHHHTTCH
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeecccccccccc-chHHHHHHHHHHhH
Confidence            3457899999999999999999976521111   1111 112110        00      0011 111222222221  


Q ss_pred             -----CCCC-----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC-CCCCCEEEEEeCCh
Q 015891          121 -----VDDG-----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP-RGYGERLIITSRNE  185 (398)
Q Consensus       121 -----~~~~-----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~-~~~gs~IIiTTR~~  185 (398)
                           +...     .......+++++++..++++|..++-+++||++.   |....+.+... +. ...+.++|++||+.
T Consensus       139 ~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~  218 (281)
T d1r0wa_         139 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM  218 (281)
T ss_dssp             HHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH
T ss_pred             HHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH
Confidence                 1110     1112347999999999999999999999999999   44433444333 33 33577888889988


Q ss_pred             HHHHH
Q 015891          186 KLTTE  190 (398)
Q Consensus       186 ~v~~~  190 (398)
                      +.+..
T Consensus       219 ~~l~~  223 (281)
T d1r0wa_         219 EHLRK  223 (281)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            76654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.64  E-value=1e-07  Score=83.72  Aligned_cols=176  Identities=15%  Similarity=0.187  Sum_probs=98.1

Q ss_pred             CCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH
Q 015891           38 ANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE  109 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~  109 (398)
                      ++++|-++..+.|.+.+..        .......+.+.++|++|+|||+||+++++.  ....|   +.+. .      .
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~--~~~~~---~~i~-~------~   76 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARVPF---ITAS-G------S   76 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TTCCE---EEEE-H------H
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHH--cCCCE---EEEE-h------H
Confidence            5789999888877664421        112234567999999999999999999987  33222   2222 1      1


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------H---HHHHHHhHcC--
Q 015891          110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------E---VCKHLSKVLP--  171 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~--  171 (398)
                      .    ++...          -......+...+..+-...+.+|+|||++..             .   ....+...+.  
T Consensus        77 ~----l~~~~----------~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~  142 (247)
T d1ixza_          77 D----FVEMF----------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF  142 (247)
T ss_dssp             H----HHHSC----------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred             H----hhhcc----------ccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC
Confidence            1    11100          0012222333444444567899999998721             1   1122222221  


Q ss_pred             -CCCCCEEEEEeCChHHH-HHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891          172 -RGYGERLIITSRNEKLT-TEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE  244 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl  244 (398)
                       ...+.-||.||.+.+.. ..+.   .-.+.+++.+.+. ++...+++..+.......+.    ....+++.+.|..-
T Consensus       143 ~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~-~eR~~il~~~l~~~~~~~~~----~~~~la~~t~g~s~  215 (247)
T d1ixza_         143 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV-KGREQILRIHARGKPLAEDV----DLALLAKRTPGFVG  215 (247)
T ss_dssp             CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCH-HHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCH
T ss_pred             CCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCH-HHHHHHHHHHhcccCCcccc----CHHHHHHHCCCCCH
Confidence             22233344477654432 2221   2356889988877 77888888766443322111    34567788887644

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.61  E-value=2.6e-07  Score=79.16  Aligned_cols=157  Identities=17%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             CCc-ccchhh--HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891           38 ANV-HGFANE--ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR  114 (398)
Q Consensus        38 ~~~-vGR~~~--~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~  114 (398)
                      ++| +|-..+  .+.+.++...  .......+.|+|++|+|||.|++++++.  .......++++.       .......
T Consensus        10 dnF~vg~~N~~a~~~~~~~~~~--~~~~~n~l~l~G~~G~GKTHLl~A~~~~--~~~~~~~~~~~~-------~~~~~~~   78 (213)
T d1l8qa2          10 ENFIVGEGNRLAYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSS-------ADDFAQA   78 (213)
T ss_dssp             SSCCCCTTTHHHHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEE-------HHHHHHH
T ss_pred             hhccCCCcHHHHHHHHHHHHhC--cCCCCCcEEEECCCCCcHHHHHHHHHHH--hccCccceEEec-------hHHHHHH
Confidence            344 564333  2334454443  2233445889999999999999999987  444444556655       2233333


Q ss_pred             HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC----CHHHHHHHHhHcC--CCCCCEEEEEeCCh---
Q 015891          115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE----DMEVCKHLSKVLP--RGYGERLIITSRNE---  185 (398)
Q Consensus       115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~----~~~~~~~l~~~l~--~~~gs~IIiTTR~~---  185 (398)
                      +...+...          .    ...+...+. .--+|++||++    +..+.+.+...+.  ...|..||+||+..   
T Consensus        79 ~~~~~~~~----------~----~~~~~~~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~  143 (213)
T d1l8qa2          79 MVEHLKKG----------T----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK  143 (213)
T ss_dssp             HHHHHHHT----------C----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred             HHHHHHcc----------c----hhhHHHHHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchh
Confidence            33332111          1    112222222 46799999998    3455555555554  34688999999853   


Q ss_pred             ------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCc
Q 015891          186 ------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQ  223 (398)
Q Consensus       186 ------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~  223 (398)
                            ++.+.+ ....+++++| +. +....++++.+...+..
T Consensus       144 l~~~~~dL~SRL-~~g~~~~i~p-~d-~~~~~iL~~~a~~rgl~  184 (213)
T d1l8qa2         144 LDGVSDRLVSRF-EGGILVEIEL-DN-KTRFKIIKEKLKEFNLE  184 (213)
T ss_dssp             CTTSCHHHHHHH-HTSEEEECCC-CH-HHHHHHHHHHHHHTTCC
T ss_pred             ccccchHHHHHh-hCceEEEECC-Cc-HHHHHHHHHHHHHcCCC
Confidence                  344444 3456777853 44 55666666644433333

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=5.7e-07  Score=78.20  Aligned_cols=173  Identities=15%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             CCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +++||.+..++.|..++... ......+.+.++||+|+||||+|+.+++.  ....|   ..++ .+....... +..++
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~--~~~~~---~~~~-~~~~~~~~~-~~~~~   81 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI---HVTS-GPVLVKQGD-MAAIL   81 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE---EEEE-TTTCCSHHH-HHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhc--cCCCc---cccc-CcccccHHH-HHHHH
Confidence            67999999999999988641 01233456889999999999999999886  33222   2222 222211111 11111


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-------------------CCCC
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-------------------RGYG  175 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-------------------~~~g  175 (398)
                      .                           ...++..+++|+++.  ....+.+.....                   ....
T Consensus        82 ~---------------------------~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (238)
T d1in4a2          82 T---------------------------SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP  134 (238)
T ss_dssp             H---------------------------HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred             H---------------------------hhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCC
Confidence            1                           123456677777762  222121111110                   1124


Q ss_pred             CEEEEEeCCh-HHHHHh-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          176 ERLIITSRNE-KLTTEM-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       176 s~IIiTTR~~-~v~~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..+|++|.+. ...... ......+.+++.+. ++...++............+   +....|++.+.|.+..+..
T Consensus       135 ~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~l~~i~~~s~gd~R~ai~  205 (238)
T d1in4a2         135 FTLVGATTRSGLLSSPLRSRFGIILELDFYTV-KELKEIIKRAASLMDVEIED---AAAEMIAKRSRGTPRIAIR  205 (238)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHTTCCBCH---HHHHHHHHTSTTCHHHHHH
T ss_pred             eEEEEecCCCccccccceeeeeEEEEecCCCH-HHHHHHHHHhhhhccchhhH---HHHHHHHHhCCCCHHHHHH
Confidence            4555555543 322222 23355678888888 66777777655443333223   2577788888888776655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.5e-07  Score=82.99  Aligned_cols=177  Identities=16%  Similarity=0.150  Sum_probs=101.6

Q ss_pred             CCcccchhhHHHHHHHHhc---c-----CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH
Q 015891           38 ANVHGFANEELHLQKLLSN---R-----GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE  109 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---~-----~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~  109 (398)
                      ++++|.++..++|.+.+..   .     ......+.+.++||+|+|||++|+.+++.  ....|   +.+. .+.-.+  
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~--~~~~~---~~i~-~~~l~~--   83 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTIS-GSDFVE--   83 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEEC-SCSSTT--
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHH--cCCCE---EEEE-hHHhhh--
Confidence            6789999888888765421   0     12234677899999999999999999986  32221   2222 111100  


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHcC--
Q 015891          110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVLP--  171 (398)
Q Consensus       110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~--  171 (398)
                                        .........+...+..+-...|++|++||++..             ..   ...+...+.  
T Consensus        84 ------------------~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~  145 (256)
T d1lv7a_          84 ------------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF  145 (256)
T ss_dssp             ------------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred             ------------------cchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC
Confidence                              000122334445555555678899999999621             11   122222222  


Q ss_pred             -CCCCCEEEEEeCChHHH-HHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          172 -RGYGERLIITSRNEKLT-TEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       172 -~~~gs~IIiTTR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                       ...+.-||.||.+.+.. ..+.   .-++.+++.+.+. ++...+++..........+.    ....+++.+.|..-+
T Consensus       146 ~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~-~~R~~il~~~l~~~~~~~~~----~~~~la~~t~G~s~a  219 (256)
T d1lv7a_         146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV-RGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGA  219 (256)
T ss_dssp             CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHH
T ss_pred             CCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCH-HHHHHHHHHhccCCCcCccc----CHHHHHHhCCCCCHH
Confidence             23344566688765433 2221   2367889988876 66777887765443322111    446677888887543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=1.1e-06  Score=76.27  Aligned_cols=174  Identities=15%  Similarity=0.125  Sum_probs=97.3

Q ss_pred             CCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL  116 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il  116 (398)
                      +++||-+..++.|..++.... .....+-+.++||+|+||||+|+.+++.  ....|   .+++ .+.......      
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~--~~~~~---~~~~-~~~~~~~~~------   76 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVNL---RVTS-GPAIEKPGD------   76 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHH--HTCCE---EEEE-TTTCCSHHH------
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCe---Eecc-CCccccchh------
Confidence            679999999999988886421 2334667889999999999999999886  22222   2233 221111111      


Q ss_pred             HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-------------------CCCC
Q 015891          117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-------------------RGYG  175 (398)
Q Consensus       117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-------------------~~~g  175 (398)
                                          ....+... ...+.++++|+++.  ....+.+.....                   ..+.
T Consensus        77 --------------------~~~~~~~~-~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~  135 (239)
T d1ixsb2          77 --------------------LAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR  135 (239)
T ss_dssp             --------------------HHHHHHTT-CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCC
T ss_pred             --------------------hHHHHHhh-ccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCC
Confidence                                11112221 22345778899883  222222221110                   1223


Q ss_pred             CEEEEEe-CChH-HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891          176 ERLIITS-RNEK-LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN  248 (398)
Q Consensus       176 s~IIiTT-R~~~-v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~  248 (398)
                      ..++.+| +... ...........+++.+.+. +....+........+....   .+....|++.+.|.+..+..
T Consensus       136 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~---~~~l~~ia~~s~gd~R~a~~  206 (239)
T d1ixsb2         136 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTP-EELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKR  206 (239)
T ss_dssp             CEEEEEESCCSSCSCGGGGGCSEEEECCCCCH-HHHHHHHHHHHGGGCCCBC---HHHHHHHHHHTTSSHHHHHH
T ss_pred             EEEEeeccCcccccchhhcccceeeEeeccCh-hhhhHHHHHHHHHhCCccc---hHHHHHHHHHcCCCHHHHHH
Confidence            3445444 3322 2222334467788888887 5566666655444333332   23677889999998765543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.2e-07  Score=84.15  Aligned_cols=177  Identities=15%  Similarity=0.212  Sum_probs=101.8

Q ss_pred             CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891           38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~  108 (398)
                      ++++|.+...++|.+.+..         ..+-...+.|.++|++|+|||+||+++++.  ...+|    + . ++    .
T Consensus         7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~--~~~~~----~-~-~~----~   74 (265)
T d1r7ra3           7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF----I-S-IK----G   74 (265)
T ss_dssp             SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHH--TTCEE----E-E-EC----H
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHH--hCCcE----E-E-EE----H
Confidence            5678888877777765431         112344677999999999999999999988  33332    1 1 21    1


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------H---HHHHHHhHcC-
Q 015891          109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------E---VCKHLSKVLP-  171 (398)
Q Consensus       109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~-  171 (398)
                      ..    +..   ..       .......+...+..+-...+.+|+|||++..             .   ....+...+. 
T Consensus        75 ~~----l~~---~~-------~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~  140 (265)
T d1r7ra3          75 PE----LLT---MW-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG  140 (265)
T ss_dssp             HH----HHT---SC-------TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-
T ss_pred             HH----hhh---cc-------ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhC
Confidence            11    110   00       0122334444555555678999999999822             1   1123333332 


Q ss_pred             --CCCCCEEEEEeCChHHH-HHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891          172 --RGYGERLIITSRNEKLT-TEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED  245 (398)
Q Consensus       172 --~~~gs~IIiTTR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla  245 (398)
                        ...+.-||.||...+-. ..+.   .....+++++.+. ++...+++..+.......+    ....+|++++.|..-+
T Consensus       141 ~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~-~~R~~il~~~l~~~~~~~~----~~l~~la~~t~g~s~~  215 (265)
T d1r7ra3         141 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE-KSRVAILKANLRKSPVAKD----VDLEFLAKMTNGFSGA  215 (265)
T ss_dssp             -----CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCC-HHHHHHHHHHTTCC----C----CCCHHHHHHHCSSCCH
T ss_pred             cCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHH-HHHHHHHHHHhccCCchhh----hhHHHHHhcCCCCCHH
Confidence              22345677788765432 1121   2367899988888 6688888776654322111    1346677888887654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=6.7e-07  Score=74.65  Aligned_cols=144  Identities=15%  Similarity=0.117  Sum_probs=83.9

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC---CCCccc-cceEEEEecCCcccHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP---DVKTQF-VPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~~v~~v~~~~~~~~~~~  113 (398)
                      +..|||+++++++...|..    ....-+.++|++|+|||+++..+++..   .+-... ...+|.-+++          
T Consensus        22 d~~igRd~Ei~~l~~iL~r----~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~----------   87 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG----------   87 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH----------
T ss_pred             CCCcCcHHHHHHHHHHHhc----cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHH----------
Confidence            4589999999999999975    334567899999999999999887641   122222 2344433121          


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHH-HHHHHHHhC-CCcEEEecCCCCH----------HHHHHHHhHcCCCCCCEEEEE
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLD-YVLQQQLIG-KRYLIVLDDFEDM----------EVCKHLSKVLPRGYGERLIIT  181 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~-~~l~~~l~~-k~~LlVLDdv~~~----------~~~~~l~~~l~~~~gs~IIiT  181 (398)
                      .++..  ...       ....+... ..+...... .+.+|++||+...          +..+.|.+.+.. ..-++|.|
T Consensus        88 ~LiAg--~~~-------rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r-g~l~~Iga  157 (195)
T d1jbka_          88 ALVAG--AKY-------RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGA  157 (195)
T ss_dssp             HHHTT--TCS-------HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-TSCCEEEE
T ss_pred             HHhcc--CCc-------cHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC-CCceEEec
Confidence            11110  000       01122222 233333333 4789999999833          233566666643 35677877


Q ss_pred             eCChHHHHHh------cCCCceEEcCCCCC
Q 015891          182 SRNEKLTTEM------VGEENLHQLQPLSD  205 (398)
Q Consensus       182 TR~~~v~~~~------~~~~~~~~l~~L~~  205 (398)
                      |...+.....      ...-+.+.+.+.+.
T Consensus       158 tT~eey~~~~e~d~aL~rrF~~I~V~Ep~~  187 (195)
T d1jbka_         158 TTLDEYRQYIEKDAALERRFQKVFVAEPSV  187 (195)
T ss_dssp             ECHHHHHHHTTTCHHHHTTEEEEECCCCCH
T ss_pred             CCHHHHHHHHHcCHHHHhcCCEeecCCCCH
Confidence            7766655443      12345677777776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.49  E-value=4.2e-07  Score=79.65  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=84.7

Q ss_pred             CCcccchhhHHHHHHHHhc------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHH
Q 015891           38 ANVHGFANEELHLQKLLSN------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESI  111 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~  111 (398)
                      ..+||..+.++.+.+.+..      .......+.|.++|++|+|||++|+++++.  ....|   +.+. .+....    
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~--~~~~~---~~i~-~~~~~~----   78 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKIC-SPDKMI----   78 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEE-CGGGCT----
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhc--ccccc---cccc-cccccc----
Confidence            4588888877776665442      123345678999999999999999999986  33232   2222 111000    


Q ss_pred             HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC------------HHHHHHHHhHcCC--CCCCE
Q 015891          112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED------------MEVCKHLSKVLPR--GYGER  177 (398)
Q Consensus       112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~------------~~~~~~l~~~l~~--~~gs~  177 (398)
                              +..       .......++..+..+....+.+|+|||++.            ......+...+..  ..+.+
T Consensus        79 --------g~~-------~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  143 (246)
T d1d2na_          79 --------GFS-------ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK  143 (246)
T ss_dssp             --------TCC-------HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE
T ss_pred             --------ccc-------ccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccc
Confidence                    000       001112223344455566789999999862            1233344444431  23333


Q ss_pred             --EEEEeCChHHHHHh--cCC-CceEEcCCCCChhHHHHHHHh
Q 015891          178 --LIITSRNEKLTTEM--VGE-ENLHQLQPLSDQESCWLIYRD  215 (398)
Q Consensus       178 --IIiTTR~~~v~~~~--~~~-~~~~~l~~L~~~e~~~~l~~~  215 (398)
                        ||.||...+.+...  .+. ...+.++.++..+.....+..
T Consensus       144 v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~  186 (246)
T d1d2na_         144 LLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL  186 (246)
T ss_dssp             EEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred             eeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHHh
Confidence              45578777665442  122 456777666665555555544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=1.8e-06  Score=80.25  Aligned_cols=152  Identities=18%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC---CCCCc-cccceEEEEecCCcccHHHHHH
Q 015891           38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK---PDVKT-QFVPRIWVCTMSGQKTAESIVK  113 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~---~~~~~-~F~~~~~v~~v~~~~~~~~~~~  113 (398)
                      +++|||+.+++++.+.|..    ....-+.|+|++|+|||+|+..+++.   ..+-. -....+|.-+++.-..      
T Consensus        22 d~~~gr~~ei~~~~~~L~r----~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~a------   91 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------   91 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred             CCCcCcHHHHHHHHHHHhc----CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhc------
Confidence            4589999999999999975    23334578899999999988766543   11222 2233555442332110      


Q ss_pred             HHHHHcCCCCCCCCCcCCCchHHHH-HHHHHHHhC-CCcEEEecCCCCH----------HHHHHHHhHcCCCCCCEEEEE
Q 015891          114 RILKRLGVDDGTTNSFEGQGLAFLD-YVLQQQLIG-KRYLIVLDDFEDM----------EVCKHLSKVLPRGYGERLIIT  181 (398)
Q Consensus       114 ~il~~l~~~~~~~~~~~~~~~~~~~-~~l~~~l~~-k~~LlVLDdv~~~----------~~~~~l~~~l~~~~gs~IIiT  181 (398)
                          ....         ....+... ..+...... .+.+|++|++...          +..+.|.+.+..+ .-++|.+
T Consensus        92 ----g~~~---------~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg-~~~~I~~  157 (387)
T d1qvra2          92 ----GAKY---------RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG-ELRLIGA  157 (387)
T ss_dssp             -------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT-CCCEEEE
T ss_pred             ----ccCc---------chhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC-Ccceeee
Confidence                0000         01222222 233333333 3689999999843          3345666666443 4566666


Q ss_pred             eCChHHHHHh-----cCCCceEEcCCCCChhHHHHHHH
Q 015891          182 SRNEKLTTEM-----VGEENLHQLQPLSDQESCWLIYR  214 (398)
Q Consensus       182 TR~~~v~~~~-----~~~~~~~~l~~L~~~e~~~~l~~  214 (398)
                      |........-     ...-+.+.+.+.+. +.+..+++
T Consensus       158 tT~~ey~~~e~d~al~rrF~~v~v~ep~~-~~~~~il~  194 (387)
T d1qvra2         158 TTLDEYREIEKDPALERRFQPVYVDEPTV-EETISILR  194 (387)
T ss_dssp             ECHHHHHHHTTCTTTCSCCCCEEECCCCH-HHHHHHHH
T ss_pred             cCHHHHHHhcccHHHHHhcccccCCCCcH-HHHHHHHH
Confidence            6655554321     12356788999998 55555554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.16  E-value=7.6e-07  Score=73.44  Aligned_cols=71  Identities=13%  Similarity=0.251  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHhCCCcEEEecCCC-----CHHHHHHHHhHcCCCCCCEEEEEeCChHH---HHHh--cCCCceEEcCCC
Q 015891          134 LAFLDYVLQQQLIGKRYLIVLDDFE-----DMEVCKHLSKVLPRGYGERLIITSRNEKL---TTEM--VGEENLHQLQPL  203 (398)
Q Consensus       134 ~~~~~~~l~~~l~~k~~LlVLDdv~-----~~~~~~~l~~~l~~~~gs~IIiTTR~~~v---~~~~--~~~~~~~~l~~L  203 (398)
                      .......+...+..++-++++|++.     +..+.+.+...+. ..+..||+|++...+   +..+  .....++.+..-
T Consensus        85 ~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~-~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~  163 (178)
T d1ye8a1          85 IPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH-DPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE  163 (178)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT-CTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred             hhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc-cCCCEEEEEEccHHHHHhhceEEEEeCCEEEEECCc
Confidence            3345566777778899999999986     3356666666654 346788999887632   2222  123456666544


Q ss_pred             CC
Q 015891          204 SD  205 (398)
Q Consensus       204 ~~  205 (398)
                      +.
T Consensus       164 nr  165 (178)
T d1ye8a1         164 NR  165 (178)
T ss_dssp             TT
T ss_pred             cH
Confidence            43

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=3.8e-05  Score=64.42  Aligned_cols=132  Identities=9%  Similarity=0.038  Sum_probs=78.8

Q ss_pred             hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC-CCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891           46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG  124 (398)
Q Consensus        46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~  124 (398)
                      .++.+..++..    .....+.++|++|+||||+|..+.+... .........++..-+...... .++++.+.+.....
T Consensus         2 ~~~~l~~~i~~----~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id-~IR~i~~~~~~~~~   76 (198)
T d2gnoa2           2 QLETLKRIIEK----SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDFLNYSPE   76 (198)
T ss_dssp             HHHHHHHHHHT----CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHHHTSCCS
T ss_pred             HHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHH-HHHHHHHHHhhCcc
Confidence            45667777754    4688999999999999999999876410 111122344444111111222 22334444332211


Q ss_pred             CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCC-hHHHHHhcCCCceEEc
Q 015891          125 TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRN-EKLTTEMVGEENLHQL  200 (398)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~-~~v~~~~~~~~~~~~l  200 (398)
                                           .+++-++|+|+++  +.+....|...+- ...++.+|++|.+ ..+...+......+.+
T Consensus        77 ---------------------~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~  135 (198)
T d2gnoa2          77 ---------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVV  135 (198)
T ss_dssp             ---------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred             ---------------------cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeC
Confidence                                 1345699999999  5566667776664 2346666666665 4455666566777888


Q ss_pred             CCC
Q 015891          201 QPL  203 (398)
Q Consensus       201 ~~L  203 (398)
                      .+.
T Consensus       136 ~~p  138 (198)
T d2gnoa2         136 NVP  138 (198)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            644

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.71  E-value=0.00039  Score=60.07  Aligned_cols=46  Identities=13%  Similarity=0.092  Sum_probs=37.3

Q ss_pred             CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|||....++++.+.+..  -......|.|+|+.|+|||++|+.+...
T Consensus         1 ~~v~~S~~~~~~~~~~~~--~a~~~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKK--ISCAECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHH--HTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHH--HhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            489999999998888876  2333445899999999999999999764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00024  Score=63.80  Aligned_cols=49  Identities=18%  Similarity=0.184  Sum_probs=38.7

Q ss_pred             CCcccchhhHHHHHHHHhc-----cCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSN-----RGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~-----~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.+..++.+...+..     ...+....++.++||+|+|||.||+.++.-
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhh
Confidence            5689999999998887642     112334558889999999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.00016  Score=64.96  Aligned_cols=49  Identities=18%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             CCcccchhhHHHHHHHHhcc-----CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNR-----GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~-----~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.++.++.|...+...     ..+....++.++|+.|+|||.||+.++..
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            45789999999887766531     12223447789999999999999999875

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.32  E-value=8.2e-05  Score=65.02  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.+..++......+.++.|.++|++|+||||||+.+++.
T Consensus        16 ~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          16 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3334444433334456788999999999999999999987

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=0.00028  Score=61.70  Aligned_cols=101  Identities=17%  Similarity=0.122  Sum_probs=68.0

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCC
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNS  128 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~  128 (398)
                      .|...|.. ++-+.-+++-|+|++|+||||||.+++..  ....-..++|++ ....++..     .++++|.+.+...-
T Consensus        47 ~lD~~lg~-gG~~~g~i~e~~G~~~~GKT~l~l~~~~~--~q~~g~~~vyID-tE~~~~~e-----~a~~~GvD~d~il~  117 (269)
T d1mo6a1          47 ALDVALGI-GGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFID-AEHALDPD-----YAKKLGVDTDSLLV  117 (269)
T ss_dssp             HHHHHTSS-SSBCSSSEEEEECSSSSSHHHHHHHHHHH--HHHTTCEEEEEE-SSCCCCHH-----HHHHHTCCGGGCEE
T ss_pred             HHHHhhcc-CCcccceeEEEecCCCcHHHHHHHHHHHH--HhcCCCEEEEEE-CCccCCHH-----HHHHhCCCHHHeEE
Confidence            34455531 25567889999999999999999888765  222223478988 66666654     35667776654333


Q ss_pred             cCCCchHHHHHHHHHHHhC-CCcEEEecCCC
Q 015891          129 FEGQGLAFLDYVLQQQLIG-KRYLIVLDDFE  158 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~  158 (398)
                      ......++....+...+.. +..|||+|.+.
T Consensus       118 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~  148 (269)
T d1mo6a1         118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA  148 (269)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCEEEEEEECST
T ss_pred             ecCCCHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            3345667777666666554 46799999986

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.30  E-value=7.4e-05  Score=63.74  Aligned_cols=116  Identities=12%  Similarity=0.071  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCC---CCC----------ccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKP---DVK----------TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFE  130 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~---~~~----------~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~  130 (398)
                      +++.|.|++..||||+.+.+.-..   +..          ..|+ .++.. +....+...                   .
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d-~I~~~-~~~~d~~~~-------------------~   94 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFD-GIYTR-IGASDDLAG-------------------G   94 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCS-EEEEE-CCC-------------------------C
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecc-eEEEE-ECCCccccC-------------------C
Confidence            378999999999999999884210   010          1122 22333 222211111                   0


Q ss_pred             CCchHHHHHHHHHHHh--CCCcEEEecCCC---CHHHHH----HHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891          131 GQGLAFLDYVLQQQLI--GKRYLIVLDDFE---DMEVCK----HLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQ  201 (398)
Q Consensus       131 ~~~~~~~~~~l~~~l~--~k~~LlVLDdv~---~~~~~~----~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~  201 (398)
                      .+....-...+...+.  +++.|+++|++-   +...-.    .+...+ ...++++++|||..++..........+.+.
T Consensus        95 ~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L-~~~~~~~i~tTH~~eL~~l~~~~~~~~~~~  173 (224)
T d1ewqa2          95 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYFELTALGLPRLKNLHVA  173 (224)
T ss_dssp             CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH-HHHTCEEEEECCCHHHHTCCCTTEEEEEEE
T ss_pred             ccHHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHH-hhcCcceEEeeechhhhhhhhcccceEEEE
Confidence            1222222333444443  578999999998   321111    111222 224788999999988765432223344443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.00042  Score=56.34  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+.+|.++|++|+||||+|+.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            56789999999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00047  Score=57.82  Aligned_cols=94  Identities=18%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD  138 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~  138 (398)
                      ...+.++.++|+.|+||||.+..++..  .+..=..+..+. .. -.....+.++.+.+.++.+......  ..+.....
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~--~~~~g~kV~lit-~Dt~R~gA~eQL~~~a~~l~v~~~~~~~--~~d~~~~l   80 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQ--FEQQGKSVMLAA-GDTFRAAAVEQLQVWGQRNNIPVIAQHT--GADSASVI   80 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHH--HHTTTCCEEEEC-CCTTCHHHHHHHHHHHHHTTCCEECCST--TCCHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEe-cccccccchhhhhhhhhhcCCccccccc--CCCHHHHH
Confidence            456789999999999999977777654  221112233333 22 2233456778888888876432211  12222222


Q ss_pred             HH-HHHHHhCCCcEEEecCCC
Q 015891          139 YV-LQQQLIGKRYLIVLDDFE  158 (398)
Q Consensus       139 ~~-l~~~l~~k~~LlVLDdv~  158 (398)
                      .. +.....+..-++++|=+-
T Consensus        81 ~~~~~~a~~~~~d~ilIDTaG  101 (211)
T d2qy9a2          81 FDAIQAAKARNIDVLIADTAG  101 (211)
T ss_dssp             HHHHHHHHHTTCSEEEECCCC
T ss_pred             HHHHHHHHHcCCCEEEeccCC
Confidence            22 222223455789999876

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.26  E-value=0.00093  Score=55.88  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=57.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV  140 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~  140 (398)
                      .+.+++.++|++|+||||.+..++..  ...+-..+..++.-.-.....+.++...+.++.+......  ..+.......
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~--~~~~~~~~~~   83 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD--GESPESIRRR   83 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT--TCCHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccc--cchhhHHHHH
Confidence            45688999999999999977777655  2222223455551122334556777888888775432211  1223322222


Q ss_pred             H-HHHHhCCCcEEEecCCC----CHHHHHHHHhH
Q 015891          141 L-QQQLIGKRYLIVLDDFE----DMEVCKHLSKV  169 (398)
Q Consensus       141 l-~~~l~~k~~LlVLDdv~----~~~~~~~l~~~  169 (398)
                      . ........-++++|=+.    +....+.+...
T Consensus        84 ~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~  117 (207)
T d1ls1a2          84 VEEKARLEARDLILVDTAGRLQIDEPLMGELARL  117 (207)
T ss_dssp             HHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred             HHHHHhhccCcceeecccccchhhhhhHHHHHHH
Confidence            1 12223445677778766    44444444443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.24  E-value=0.00053  Score=57.38  Aligned_cols=94  Identities=21%  Similarity=0.134  Sum_probs=55.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH-H
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD-Y  139 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~-~  139 (398)
                      ++.+++.++|+.|+||||.+..++..  ....=..+..++.-.......+.++.+.+.++.+......  ..+..... .
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~--~~d~~~~~~~   79 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDPAALAYD   79 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCT--TCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccC--CccHHHHHHH
Confidence            46789999999999999977766654  2211123556652233456677888888888876422211  12222222 1


Q ss_pred             HHHHHHhCCCcEEEecCCC
Q 015891          140 VLQQQLIGKRYLIVLDDFE  158 (398)
Q Consensus       140 ~l~~~l~~k~~LlVLDdv~  158 (398)
                      .+........-+|++|=+-
T Consensus        80 ~~~~~~~~~~d~ilIDTaG   98 (207)
T d1okkd2          80 AVQAMKARGYDLLFVDTAG   98 (207)
T ss_dssp             HHHHHHHHTCSEEEECCCC
T ss_pred             HHHHHHHCCCCEEEcCccc
Confidence            2222223456788888765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.24  E-value=0.00028  Score=61.66  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCC
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNS  128 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~  128 (398)
                      .|..+|.. +.-+.-+++-|+|++|+||||||.+++...  ...=..++|++ ....++.     ++++.+|.+.+...-
T Consensus        44 ~lD~~Lg~-GGip~g~itei~G~~~sGKT~l~l~~~~~a--qk~g~~v~yiD-tE~~~~~-----~~a~~~Gvd~d~i~~  114 (268)
T d1xp8a1          44 SLDLALGV-GGIPRGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFID-AEHALDP-----VYARALGVNTDELLV  114 (268)
T ss_dssp             HHHHHTSS-SSEETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEE-SSCCCCH-----HHHHHTTCCGGGCEE
T ss_pred             HHHHHhcC-CCccCceEEEEecCCccchHHHHHHHHHHH--HhCCCEEEEEE-CCccCCH-----HHHHHhCCCchhEEE
Confidence            34455531 133466799999999999999999987652  22213478888 6666665     367788887654433


Q ss_pred             cCCCchHHHHHHHHHHHhC-CCcEEEecCCC
Q 015891          129 FEGQGLAFLDYVLQQQLIG-KRYLIVLDDFE  158 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~  158 (398)
                      ......+++...+...+.. ...|+|+|-+.
T Consensus       115 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~  145 (268)
T d1xp8a1         115 SQPDNGEQALEIMELLVRSGAIDVVVVDSVA  145 (268)
T ss_dssp             ECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred             EcCCCHHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            3345677777766666654 46799999885

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.24  E-value=6.2e-05  Score=61.54  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=23.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -++.|+|.|++|+||||||+.+...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999886

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.00047  Score=57.94  Aligned_cols=95  Identities=20%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH-
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD-  138 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~-  138 (398)
                      ...+.++.++|+.|+||||.+..++..  ...+-..+..+..-.-.....+.++...+.++........  ..+..... 
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~--~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~--~~d~~~~~~   83 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE--GADPAAVAF   83 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST--TCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCC--CCcHHHHHH
Confidence            456789999999999999976666654  2222233555552223344556777888888765432111  12222222 


Q ss_pred             HHHHHHHhCCCcEEEecCCC
Q 015891          139 YVLQQQLIGKRYLIVLDDFE  158 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~  158 (398)
                      ........+..-+|++|=+-
T Consensus        84 ~~~~~~~~~~~d~ilIDTaG  103 (213)
T d1vmaa2          84 DAVAHALARNKDVVIIDTAG  103 (213)
T ss_dssp             HHHHHHHHTTCSEEEEEECC
T ss_pred             HHHHHHHHcCCCEEEEeccc
Confidence            22223334456799999765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.22  E-value=0.00046  Score=59.08  Aligned_cols=102  Identities=19%  Similarity=0.157  Sum_probs=59.4

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC----
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG----  124 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~----  124 (398)
                      .|.++|..  +-+.-.++.|+|++|+|||+|+.+++.+  .......++|++ ....  ...+. ..+..++....    
T Consensus        14 ~LD~~l~G--Gi~~gsl~li~G~pGsGKT~l~~qia~~--~~~~~~~~~~is-~e~~--~~~~~-~~~~~~~~~~~~~~~   85 (242)
T d1tf7a2          14 RLDEMCGG--GFFKDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFA-YEES--RAQLL-RNAYSWGMDFEEMER   85 (242)
T ss_dssp             HHHHHTTS--SEESSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEE-SSSC--HHHHH-HHHHTTSCCHHHHHH
T ss_pred             HHHHhhcC--CCcCCeEEEEEeCCCCCHHHHHHHHHHH--HHHhccccceee-ccCC--HHHHH-HHHHHcCCChHHHhh
Confidence            35555542  3456789999999999999999999887  445566677877 4432  22222 22222222110    


Q ss_pred             ------CCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891          125 ------TTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE  158 (398)
Q Consensus       125 ------~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~  158 (398)
                            ................+...+. .+..++|+|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~  126 (242)
T d1tf7a2          86 QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLS  126 (242)
T ss_dssp             TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHH
T ss_pred             cCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecch
Confidence                  0000112334444555555554 467899999876

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00031  Score=61.22  Aligned_cols=101  Identities=17%  Similarity=0.099  Sum_probs=65.6

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCC
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNS  128 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~  128 (398)
                      .|..+|.. +.-..-+++-|+|++|+||||||.+++..  ....=..++|++ ....++..     .++.+|++.+...-
T Consensus        41 ~lD~~Lg~-GGi~~g~itei~G~~gsGKTtl~l~~~~~--~q~~g~~~vyid-tE~~~~~~-----~a~~~Gvd~d~v~~  111 (263)
T d1u94a1          41 SLDIALGA-GGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDIDNLLC  111 (263)
T ss_dssp             HHHHHTSS-SSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred             HHHHHhcC-CCccCceEEEEecCCCcHHHHHHHHHHHH--HHcCCCEEEEEc-cccccCHH-----HHHHhCCCHHHEEE
Confidence            45555531 13345679999999999999999999776  222223478888 66666643     46777876544332


Q ss_pred             cCCCchHHHHHHHHHHHhC-CCcEEEecCCC
Q 015891          129 FEGQGLAFLDYVLQQQLIG-KRYLIVLDDFE  158 (398)
Q Consensus       129 ~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~  158 (398)
                      ......++....+...... +..|+|+|-+.
T Consensus       112 ~~~~~~E~~~~~i~~l~~~~~~~liViDSi~  142 (263)
T d1u94a1         112 SQPDTGEQALEICDALARSGAVDVIVVDSVA  142 (263)
T ss_dssp             ECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred             ecCCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            3334566666666665553 45799999885

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.19  E-value=0.00053  Score=57.53  Aligned_cols=95  Identities=19%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchH-HHH
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLA-FLD  138 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~-~~~  138 (398)
                      ...+.++.++|+.|+||||.+..++..  .+..=..+..+..-.......+.++...+.++..-.....  ..+.. ...
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~--~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~--~~~~~~~~~   84 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPG--EKDVVGIAK   84 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHH--HHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTT--CCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCceEEEEeeccccchhHHHHHhccccCcceeeccc--chhhhHHHH
Confidence            346889999999999999976666554  2221123555551223344556677778888876432211  12222 222


Q ss_pred             HHHHHHHhCCCcEEEecCCC
Q 015891          139 YVLQQQLIGKRYLIVLDDFE  158 (398)
Q Consensus       139 ~~l~~~l~~k~~LlVLDdv~  158 (398)
                      ..+........-+|++|=+-
T Consensus        85 ~a~~~~~~~~~d~IlIDTaG  104 (211)
T d1j8yf2          85 RGVEKFLSEKMEIIIVDTAG  104 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCC
T ss_pred             HHHHHhhccCCceEEEecCC
Confidence            23344445567788888664

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=6.3e-05  Score=60.12  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|.|.|++|+||||+|+.++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45888899999999999999987

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00051  Score=58.77  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      +.+++.|.|++..||||+++.+.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHH
Confidence            35789999999999999999984

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00023  Score=58.68  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++.|...... ......-+|+|.|++|+||||||+.+...
T Consensus         7 ~~~~~~~~~~-~~~~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_           7 IDFLCKTILA-IKTAGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             HHHHHHHHHT-SCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3444444433 14456778999999999999999999765

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.11  E-value=0.00015  Score=58.89  Aligned_cols=26  Identities=19%  Similarity=0.164  Sum_probs=23.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+-.+|.|+|++|+||||+|+.++..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35578899999999999999999877

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.09  E-value=0.00013  Score=57.83  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++|.|.|++|+||||||+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999998654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.05  E-value=0.00014  Score=58.50  Aligned_cols=23  Identities=39%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++|.|.|++|+||||+|+.+...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999876

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0002  Score=57.74  Aligned_cols=27  Identities=22%  Similarity=0.524  Sum_probs=24.4

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++..+++.|.|++|+||||+|+.+...
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999999999876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00015  Score=58.37  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++++|+|.+|+|||||++.+.+.
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999865

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0002  Score=58.99  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=27.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV   99 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v   99 (398)
                      .+..+|.|+|++|+||||+|+.+...  ....+....++
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~--l~~~~~~~~~~   53 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEY--LVCHGIPCYTL   53 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHH--HHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCCccch
Confidence            34568889999999999999999876  43444443343

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00016  Score=58.91  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|.|+|++|+|||||++.++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999755

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.91  E-value=0.0002  Score=57.90  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++|.|.|++|+||||+|+.+.+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999887

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.90  E-value=0.0002  Score=57.71  Aligned_cols=23  Identities=43%  Similarity=0.570  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|.|.|++|+||||+|+.+...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34779999999999999999876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.89  E-value=0.0003  Score=56.79  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++|.|.|++|+||||+|+.+...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999886

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.89  E-value=0.00028  Score=58.44  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++.+|.|+|++|+||||+|+.++..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00027  Score=63.33  Aligned_cols=49  Identities=24%  Similarity=0.344  Sum_probs=37.2

Q ss_pred             CCcccchhhHHHHHHHHhc----cC------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSN----RG------TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~----~~------~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++|.++.++.|...+..    ..      .....+.+.++||+|+|||.||+++++.
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhc
Confidence            4579999999998876621    00      1113577889999999999999999886

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00034  Score=57.97  Aligned_cols=28  Identities=36%  Similarity=0.620  Sum_probs=25.0

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+..++|.|.|++|+||||+|+.++..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999999886

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.78  E-value=0.00037  Score=56.20  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++...|.|.|++|+||||+|+.++..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999886

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.00026  Score=57.12  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |.++|++|+||||+++.++..
T Consensus         4 IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            456699999999999999887

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.67  E-value=0.00026  Score=56.94  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |.|+||+|+||||+++.++..
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999999887

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.66  E-value=0.0017  Score=57.94  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++.++|++|+|||.||+.++..
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            345666899999999999999987

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.61  E-value=0.00044  Score=56.22  Aligned_cols=23  Identities=39%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++|+|.|++|+||||+++.+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.57  E-value=0.00054  Score=57.12  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+|.++|.+|+||||+|+.+++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.55  E-value=0.0046  Score=57.09  Aligned_cols=123  Identities=14%  Similarity=0.127  Sum_probs=71.2

Q ss_pred             ccch-hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHc
Q 015891           41 HGFA-NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRL  119 (398)
Q Consensus        41 vGR~-~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l  119 (398)
                      .|.. ...+.+..++..     ....|.|.|+.|+||||.+..+.+.  +...-..++-+.   .+...           
T Consensus       140 LG~~~~~~~~l~~l~~~-----~~GliLvtGpTGSGKSTTl~~~l~~--~~~~~~~i~tiE---dPiE~-----------  198 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIKR-----PHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNILTVE---DPIEF-----------  198 (401)
T ss_dssp             SCCCHHHHHHHHHHHTS-----SSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCEEEEE---SSCCS-----------
T ss_pred             hcccHHHHHHHHHHHhh-----hhceEEEEcCCCCCccHHHHHHhhh--hcCCCceEEEec---cCccc-----------
Confidence            3544 455566666643     6799999999999999999998775  222212233332   21110           


Q ss_pred             CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891          120 GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEK  186 (398)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~  186 (398)
                      .+...................++..|+..|-+|++.++.|.+........-  ..|-.|+-|-|-.+
T Consensus       199 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ta~~a~~aa--~tGhlV~tTlHa~~  263 (401)
T d1p9ra_         199 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS--LTGHLVMSTLHTNT  263 (401)
T ss_dssp             CCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEECCSS
T ss_pred             ccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCChHHHHHHHHHH--hcCCeEEEEeccCc
Confidence            000000000011122234667888999999999999999987665433221  23555666666544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.54  E-value=0.0003  Score=56.96  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|.|+|++|+||||+|+.++..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999999887

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.48  E-value=0.00063  Score=54.66  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++++|+|..|+|||||+..+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            58999999999999999999765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00092  Score=56.03  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +-+|+|.|+.|+||||+|+.+...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999776

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00091  Score=55.10  Aligned_cols=24  Identities=42%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+|.|.|++|+||||+|+.++..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.20  E-value=0.0012  Score=53.84  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +++.|.|++|+||||+++.+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999999776

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.001  Score=54.69  Aligned_cols=23  Identities=39%  Similarity=0.739  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|.|+||+|+|||||++.++..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            44889999999999999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0011  Score=55.62  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+|+|.||+|+||||+|+.+.++
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999887

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.13  E-value=0.0012  Score=53.65  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |.|.|++|+||||+|+.++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            779999999999999999876

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.13  E-value=0.0012  Score=54.43  Aligned_cols=25  Identities=44%  Similarity=0.659  Sum_probs=22.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++|.|.|++|+||||+|+.++..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999886

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.11  E-value=0.0017  Score=54.42  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++..+|.+.|++|+||||||+.+...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.11  E-value=0.013  Score=52.26  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQ  142 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~  142 (398)
                      +-+.|.|+.|+||||++++++..  +... ...+-+.+.. ...             +... ..........-.....++
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~--i~~~-~rivtiEd~~-El~-------------l~~~~~~~~~~~~~~~~~~~ll~  229 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF--IPKE-ERIISIEDTE-EIV-------------FKHHKNYTQLFFGGNITSADCLK  229 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG--SCTT-CCEEEEESSC-CCC-------------CSSCSSEEEEECBTTBCHHHHHH
T ss_pred             CCEEEEeeccccchHHHHHHhhh--cccc-cceeeccchh-hhh-------------cccccccceeccccchhHHHHHH
Confidence            34889999999999999999876  3222 2233333111 110             0000 000000011112345678


Q ss_pred             HHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHH
Q 015891          143 QQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLT  188 (398)
Q Consensus       143 ~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~  188 (398)
                      ..++..+-.||+.++.+.+.+..+......+.|  ++.|.|-.+..
T Consensus       230 ~~lR~~pd~iivgEiR~~ea~~~l~a~~tGh~g--~~tT~Ha~s~~  273 (323)
T d1g6oa_         230 SCLRMRPDRIILGELRSSEAYDFYNVLCSGHKG--TLTTLHAGSSE  273 (323)
T ss_dssp             HHTTSCCSEEEESCCCSTHHHHHHHHHHTTCSC--EEEEECCSSHH
T ss_pred             HHhccCCCcccCCccCchhHHHHHHHHHhcCCc--EEEEECCCCHH
Confidence            888999999999999988777766543322233  66777755433

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.09  E-value=0.0011  Score=54.31  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..|.|.|++|+||||+|+.+++.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            345779999999999999999876

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.05  E-value=0.0018  Score=53.22  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=21.0

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.-.|.|.|++|+||||+|+.++..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3445667899999999999999886

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0015  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++|.|+||+|+|||||++.+...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            57889999999999999999775

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.99  E-value=0.0019  Score=52.94  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..++| |.|++|+||||+|+.++..
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHH
Confidence            35555 7899999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0014  Score=53.39  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=24.4

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcCCCCCccccc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP   95 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~   95 (398)
                      .+.|.|+||+|+|||||++.+..+  ....|..
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~--~~~~~~~   33 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITK--HPDRFAY   33 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH--CTTTEEC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHh--CCcCeee
Confidence            367999999999999999999865  3344543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0014  Score=54.04  Aligned_cols=22  Identities=32%  Similarity=0.700  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|+||+|+|||||++.+...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999999775

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.94  E-value=0.0016  Score=52.90  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.|.|++|+||||+|+.++..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3778899999999999999876

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.0065  Score=52.67  Aligned_cols=98  Identities=17%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-ccHHHHHHHHHHHcCC--CCCCCC------CcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-KTAESIVKRILKRLGV--DDGTTN------SFEG  131 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-~~~~~~~~~il~~l~~--~~~~~~------~~~~  131 (398)
                      .+-..++|+|.+|+|||+|+..+.++.. +.+=+.++++. +.+. ....+++.++.+.--+  ......      ..+.
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~~~-~~~~~v~V~~~-iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~  143 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAG-VGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE  143 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHT-TTCSSEEEEEE-ESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHHHH-hhCCCeEEEEE-eccChHHHHHHHHHHHhcCccccccccceEEEEEECCCC
Confidence            3445699999999999999999976511 12223456666 6655 4455666777664211  111000      0011


Q ss_pred             CchHH-----HHHHHHHHHh---CCCcEEEecCCCCH
Q 015891          132 QGLAF-----LDYVLQQQLI---GKRYLIVLDDFEDM  160 (398)
Q Consensus       132 ~~~~~-----~~~~l~~~l~---~k~~LlVLDdv~~~  160 (398)
                      ....+     ....++++++   ++..|+++||+...
T Consensus       144 ~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr~  180 (276)
T d2jdid3         144 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF  180 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhHH
Confidence            22222     2234566765   57899999999854

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.92  E-value=0.0036  Score=56.00  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           50 LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        50 l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+.+..  ...+..+|+|.|++|+|||||...+...
T Consensus        40 ~~~~~~~--~~~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          40 LIDAVLP--QTGRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             HHHHHGG--GCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHhhh--ccCCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            3344443  4567899999999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.92  E-value=0.0018  Score=52.65  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|.|.|++|+||||+|+.++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3778999999999999999886

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0036  Score=54.50  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ++..+.+.+..    +..++|.+.|.||+||||++..++.
T Consensus         7 ~~~~~~~~~~~----~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2           7 SLSALVDDIAR----NEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             CHHHHHHHHHT----TSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHhhc----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45667777744    6899999999999999998777643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0045  Score=54.79  Aligned_cols=28  Identities=21%  Similarity=0.219  Sum_probs=23.8

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+-+|||.|.+|+||||+|+.+...
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHH
Confidence            4456789999999999999999999765

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.85  E-value=0.002  Score=54.09  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -+|+|-||+|+||||+|+.++.+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999887

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.0023  Score=52.42  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+-+|||.|+.|+||||+|+.+-.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998843

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=95.80  E-value=0.02  Score=43.64  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG  120 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~  120 (398)
                      ++.++..|+++.|+|||+++-.++..  .    ...+++. +....-..+....+.+.++
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~--~----~~~vli~-~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAA--Q----GYKVLVL-NPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHT--T----TCCEEEE-ESCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHH--c----CCcEEEE-cChHHHHHHHHHHHHHHhh
Confidence            45688899999999999998776654  1    2234444 3433333444444444443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0042  Score=55.59  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...+..+|+|.|++|+|||||...+...
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999998754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.76  E-value=0.0042  Score=56.44  Aligned_cols=28  Identities=25%  Similarity=0.164  Sum_probs=25.0

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.+..+.+.++||+|+|||++|+.+++.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            4566789999999999999999999886

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.018  Score=52.06  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRI   83 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v   83 (398)
                      .+++.|.|++|.||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            478999999999999988654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.74  E-value=0.0019  Score=58.15  Aligned_cols=47  Identities=21%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      +|-..++|.+..+..|.-.+..    ....-|.|.|++|+||||||+.+..
T Consensus         4 ~~f~~I~Gq~~~kral~laa~~----~~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_           4 FPFSAIVGQEDMKLALLLTAVD----PGIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHC----GGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             CChhhccCcHHHHHHHHHHHhc----cCCCeEEEECCCCccHHHHHHHHHH
Confidence            4556789999877665543321    1223589999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0023  Score=52.00  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |.|.|++|+||||+|+.++..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            557799999999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0024  Score=51.73  Aligned_cols=22  Identities=36%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|.|.|++|+||||+|+.++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999876

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.013  Score=50.64  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .++.|+|++|+|||||+.+++.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5778999999999999988754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0071  Score=51.00  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=36.8

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc----cceEEEEecCCc
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF----VPRIWVCTMSGQ  105 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~~v~~v~~~  105 (398)
                      +..|..+|..  +-..-+++.|.|++|+|||||+.+++........+    ...+|+. ....
T Consensus        20 i~~LD~ll~G--Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~-~~~~   79 (251)
T d1szpa2          20 SKNLDTLLGG--GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID-TEGT   79 (251)
T ss_dssp             CHHHHHHHTS--SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEE-SSSC
T ss_pred             CHHHHhhhCC--CCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEe-ecch
Confidence            3456666642  34567899999999999999999997663222212    2356666 4433

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.52  E-value=0.0034  Score=54.46  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|+|+|.||+||||+|..++..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~   24 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSG   24 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHH
Confidence            67899999999999999988665

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.46  E-value=0.0034  Score=51.50  Aligned_cols=28  Identities=25%  Similarity=0.188  Sum_probs=23.9

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...++-+|+|-|.-|+||||+++.+.+.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3456679999999999999999998765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.013  Score=49.72  Aligned_cols=58  Identities=22%  Similarity=0.227  Sum_probs=36.9

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccH
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTA  108 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~  108 (398)
                      ..|..+|..  +-+.-+++.|.|++|+||||++.+++.+.....    .....+|+. .......
T Consensus        23 ~~LD~ll~G--Glp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   84 (254)
T d1pzna2          23 KSLDKLLGG--GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRP   84 (254)
T ss_dssp             HHHHHHHTS--SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCH
T ss_pred             HHHHHhhcC--CccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEe-ccchhHH
Confidence            345555542  345678999999999999999999976521111    123456666 4444443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.009  Score=52.13  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=23.8

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....+-+|||.|+.|+|||||+..+...
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHH
Confidence            4455779999999999999999988665

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.22  E-value=0.01  Score=51.46  Aligned_cols=96  Identities=15%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc-cHHHHHHHHHHHcCCCC-------CCCCCcCCCc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDD-------GTTNSFEGQG  133 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~~~  133 (398)
                      +-..++|+|.+|+|||+|+..+...  ...+-..++++. +.... ...++..++...=.++.       .+.+...-..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~--~~~~~~v~V~~~-iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~  142 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILN--QQGQNVICVYVA-IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL  142 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHT--CCTTTCEEEEEE-ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred             CCceEeeccCCCCChHHHHHHHHhh--hcccCceeeeee-ecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHH
Confidence            3445889999999999999876555  333444556666 55443 33344444433211110       0111111111


Q ss_pred             hHHHHHHHHHHHh--CCCcEEEecCCCCH
Q 015891          134 LAFLDYVLQQQLI--GKRYLIVLDDFEDM  160 (398)
Q Consensus       134 ~~~~~~~l~~~l~--~k~~LlVLDdv~~~  160 (398)
                      .......++++++  ++..|+++||+...
T Consensus       143 a~~~a~tiAEyfrd~G~~Vlll~Dsltr~  171 (276)
T d1fx0a3         143 APYTGAALAEYFMYRERHTLIIYDDLSKQ  171 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHcCCceeEEeeccHHH
Confidence            2233445566664  47899999999854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.21  E-value=0.0046  Score=52.33  Aligned_cols=22  Identities=41%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +|+|.|+.|+|||||...+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            7899999999999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0051  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++.|+||+|+|||||.+.+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            57889999999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.039  Score=46.42  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=37.3

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC----CCccccceEEEEecCCccc
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD----VKTQFVPRIWVCTMSGQKT  107 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~----~~~~F~~~~~v~~v~~~~~  107 (398)
                      ..|.++|..  .-..-+++.|.|++|+|||++|.+++....    ....+..+.|+. ......
T Consensus        24 ~~LD~~lgG--Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   84 (258)
T d1v5wa_          24 QEFDKLLGG--GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID-TENTFR   84 (258)
T ss_dssp             HHHHHHTTS--SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE-SSSCCC
T ss_pred             HHHHHhhcC--CCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEec-hHHHHH
Confidence            445566643  456778999999999999999999975421    122334466666 443333

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.99  E-value=0.0073  Score=54.85  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=36.9

Q ss_pred             CCcccchhhHHHHHHHHhcc--------------------------CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNR--------------------------GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~--------------------------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+||.++.++.+...+...                          ........+..+||.|+|||.||+.++..
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhh
Confidence            56899999988887665210                          01234566889999999999999999865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0065  Score=50.07  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|..+|..  +-..-.++.|.|++|+|||+||.+++.+
T Consensus        10 ~~LD~ll~G--Gi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          10 KELDKLLQG--GIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             HHHHHHTTT--SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHhhcC--CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            345555532  2345679999999999999999999765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.97  E-value=0.0077  Score=49.24  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +....|+|+|.+|+|||||.+.+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            44667999999999999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0091  Score=47.85  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+..|+|+|.+|+|||||.+++.+.
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.89  E-value=0.0063  Score=47.61  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |.|+|.+|+|||||++.+..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999755

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.89  E-value=0.0093  Score=47.95  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ....|+|+|.+|+|||||++.+.+.
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4668999999999999999999875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0084  Score=52.34  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=21.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.++++.+.|.||+||||++..++..
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~   31 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIR   31 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHH
Confidence            45788899999999999988777544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.014  Score=48.88  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-++.|..+|.       -+..+++|.+|+|||||.+++..+
T Consensus        84 ~g~~~L~~~l~-------~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          84 MGIEELKEYLK-------GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             TTHHHHHHHHS-------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hhHhhHHHHhc-------CCeEEEECCCCCCHHHHHHhhcch
Confidence            33667777773       357789999999999999999765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.75  E-value=0.0073  Score=47.56  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+|+|.+|+|||||.+.+..+
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            34789999999999999999776

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.013  Score=48.68  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|+|-|+-|+||||+++.+.+.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999776

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.73  E-value=0.0037  Score=54.65  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=18.8

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..+|+|.|.+|+||||+++.+.+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i   27 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQI   27 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHH
Confidence            4569999999999999999988654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.71  E-value=0.008  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|+|+|.||+||||++..++..
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~   25 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAA   25 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            56788999999999988887554

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.0084  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      -+|||+|+.|+||||+++.+-.
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            3899999999999999997743

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0035  Score=54.79  Aligned_cols=35  Identities=26%  Similarity=0.142  Sum_probs=27.7

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++.+.|..   -.+-..++|.|..|+|||+|+..+.+.
T Consensus        32 r~ID~l~P---igrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          32 RVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHHHSC---CBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeeeccc---ccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            45666653   345677899999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.01  Score=47.36  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|+|.+|+|||||++++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.55  E-value=0.014  Score=46.60  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=21.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+..-|+|+|.+|+|||||...+...
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34556889999999999999999665

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.49  E-value=0.0095  Score=49.32  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      -+|||+|..|+||||+|+.+-.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999997743

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.47  E-value=0.021  Score=45.41  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+..++..     +.--|.|+|.+|+|||||+.++...
T Consensus         5 ~~~~~~~~~-----k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           5 TRIWRLFNH-----QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHTT-----SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHhCC-----CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            455656643     3355779999999999999999765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.46  E-value=0.016  Score=54.00  Aligned_cols=49  Identities=27%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             CCcccchhhHHHHHHHHhcc----------CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           38 ANVHGFANEELHLQKLLSNR----------GTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        38 ~~~vGR~~~~~~l~~~L~~~----------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+||.++..+.|.-.+..+          ...-..+-|.++||.|+|||.||+.++.-
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHH
Confidence            56899999888888776431          01113557999999999999999999886

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.39  E-value=0.01  Score=47.00  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |+++|.+|+|||||+..+.+.
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.34  E-value=0.014  Score=46.50  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=22.3

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .++.--|+++|.+|+|||||+..+...
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            344556889999999999999999665

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.32  E-value=0.011  Score=46.82  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.011  Score=47.40  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||+..+.++
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.011  Score=46.82  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.++|.+|+|||||+..+.++
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.012  Score=46.77  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |+|+|.+|+|||||+..+.++
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.011  Score=46.79  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||+|++.+.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.20  E-value=0.028  Score=48.15  Aligned_cols=40  Identities=30%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+.++...+..  .....-.|+|+|.+|+|||||...++.+
T Consensus        16 ~~l~e~~~~l~~--~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          16 TKLLELLGNLKQ--EDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHH--TTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh--cCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            344455555554  3445667889999999999999999876

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.012  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..|+|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.14  E-value=0.012  Score=46.82  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+.++
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4889999999999999998765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.012  Score=45.83  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||+..+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999775

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.013  Score=48.39  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|+|+|.+|+|||||...+...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.07  E-value=0.014  Score=46.84  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.014  Score=47.15  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.|+|.+|+|||||+..+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999999876

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.014  Score=49.23  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +++.|+|-|+-|+||||+++.+...
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3678999999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.013  Score=46.26  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |+|+|.+|+|||+|++.+.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.014  Score=46.33  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||+..+.++
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.013  Score=46.64  Aligned_cols=23  Identities=43%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|.|+|.+|+|||||++.+.++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            34889999999999999999865

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.0096  Score=50.21  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.|+|-|+-|+||||+++.+.+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.014  Score=46.59  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||+..+.++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4789999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.92  E-value=0.017  Score=48.49  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +..|.++|..  .-..-.++.|.|++|+|||+++.+++.+
T Consensus        20 ~~~LD~ll~G--Gl~~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          20 SSELDSVLGG--GLESQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             CHHHHHHTTS--SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CHHHHHhcCC--CccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3456666632  2345689999999999999999999755

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.021  Score=45.55  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.--|+|+|.+|+|||+|+..+.++
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhC
Confidence            3446889999999999999998765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.015  Score=46.18  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.|+|.+|+|||+|+..+.++
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.88  E-value=0.045  Score=47.07  Aligned_cols=53  Identities=13%  Similarity=0.089  Sum_probs=32.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHH
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKR  118 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~  118 (398)
                      .-.++.|.|.+|+||||++.+++.+.-....+ .+++++ .  ..+.......++..
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-~v~~~s-~--E~~~~~~~~r~~~~   86 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAM-L--EESVEETAEDLIGL   86 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEE-S--SSCHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhhccc-ceeEee-e--ccchhhHHhHHHHH
Confidence            34678899999999999999887541111222 244544 3  34445555555544

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.85  E-value=0.031  Score=43.96  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKP   87 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~   87 (398)
                      ...-+|.+.|.=|+||||+++.+++..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            345689999999999999999998763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.017  Score=45.92  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||+|++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3789999999999999998765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.015  Score=46.21  Aligned_cols=21  Identities=43%  Similarity=0.770  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |+++|.+|+|||+|++.+.++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.81  E-value=0.015  Score=46.08  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||++.+.++
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3778999999999999999765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.018  Score=45.52  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-|+|+|..|+|||||+..+.++
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            456889999999999999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.015  Score=46.34  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||+|+..+..+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.015  Score=45.95  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+.+.
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.016  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999755

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.016  Score=45.91  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+.++
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.018  Score=45.16  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||.+++...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999755

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.017  Score=46.14  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|..|+|||||+..+.++
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.023  Score=45.75  Aligned_cols=25  Identities=36%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.--|.|+|.+|+|||+|++.+.++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            3446899999999999999998765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.58  E-value=0.012  Score=47.33  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |+|+|.+|+|||||++.+.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.017  Score=48.49  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.++.|.|.-|+|||||.+.+.+.
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            5789999999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.017  Score=46.06  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+..+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.018  Score=46.17  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-|.|+|.+|+|||+|+..+.++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            34778999999999999998766

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.49  E-value=0.014  Score=47.10  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+++|||||++.+.+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.49  E-value=0.019  Score=47.15  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|+|-|+-|+||||+++.+...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.02  Score=45.39  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||+|+..+..+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999766

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.43  E-value=0.019  Score=45.25  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4678999999999999998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.02  Score=45.41  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|..|+|||+|+..+..+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999998765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.33  E-value=0.025  Score=45.40  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -..|.|.|.+|+||||+|..+..+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            356889999999999999998775

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.30  E-value=0.02  Score=46.69  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+|+|.+|+|||||+..+.+.
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            34889999999999999998765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.24  E-value=0.027  Score=45.17  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -..|.|.|++|+||||||..+..+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            356889999999999999998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.03  Score=44.34  Aligned_cols=22  Identities=41%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||+|++.+.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.22  E-value=0.024  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ++|||+|..|+||||+|+.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            58999999999999999998664

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.17  E-value=0.014  Score=48.84  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891           49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .|.++|..  +-..-.++.|.|++|+|||+||.+++.
T Consensus        14 ~LD~~l~G--Gi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          14 GFDDISHG--GLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             THHHHTTS--SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhcC--CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            35555532  334678999999999999999987643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.08  E-value=0.026  Score=45.39  Aligned_cols=24  Identities=38%  Similarity=0.573  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .--|+|+|..|+|||||+.++.+.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            345899999999999999999865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.05  E-value=0.024  Score=45.69  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.027  Score=44.86  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.++|.+|+|||+|+..+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.023  Score=45.91  Aligned_cols=22  Identities=36%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.|+|.+|+|||+|+..+.++
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.024  Score=45.12  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||+..+.++
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999988765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.017  Score=46.20  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=22.9

Q ss_pred             CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           60 DDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+....|+|+|.+++|||||.+++...
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345677999999999999999998654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.91  E-value=0.026  Score=44.77  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|.|+|.+|+|||||++.+.++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            45889999999999999998765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.91  E-value=0.025  Score=47.17  Aligned_cols=35  Identities=29%  Similarity=0.228  Sum_probs=25.0

Q ss_pred             eEEEEE-cCCCChHHHHHHHHHcCCCCCccccceEEEE
Q 015891           64 RAIGVV-GVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC  100 (398)
Q Consensus        64 ~~v~I~-G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~  100 (398)
                      ++|+|+ |.||+||||+|..++..  ....-..++.++
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~--la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVA--LAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEe
Confidence            677777 99999999999988765  333323456665

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.87  E-value=0.025  Score=45.90  Aligned_cols=19  Identities=26%  Similarity=0.492  Sum_probs=17.6

Q ss_pred             EEEEEcCCCChHHHHHHHH
Q 015891           65 AIGVVGVAGVGKTTLCQRI   83 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v   83 (398)
                      -|.|+|.+|+|||||+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.027  Score=45.02  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||||++.+.++
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999998765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.80  E-value=0.026  Score=45.35  Aligned_cols=22  Identities=36%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|..|+|||+|+..+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999999776

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.71  E-value=0.028  Score=45.31  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.++|.+|+|||+|++.+..+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999998543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.70  E-value=0.02  Score=45.67  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+ |.++|.+|+|||||.+.+.+.
T Consensus        12 ~~k-IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          12 EMR-ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHTTCC
T ss_pred             eEE-EEEECCCCCCHHHHHHHHhcC
Confidence            344 779999999999999999765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.69  E-value=0.029  Score=44.53  Aligned_cols=22  Identities=45%  Similarity=0.720  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.++|..|+|||||+..+.++
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678899999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.63  E-value=0.047  Score=43.67  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.--|.++|.+|+|||||...+...
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            44556779999999999999998544

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.03  Score=46.20  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +.|+|-|+-|+||||+++.+...
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999999765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.029  Score=45.51  Aligned_cols=22  Identities=36%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||+|+..+..+
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778999999999999998765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.017  Score=45.98  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=18.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+++|.+|+|||+|+..+.++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999988655

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.51  E-value=0.037  Score=44.06  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.-|.|.|.+|+||||+|..+...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            357899999999999999988775

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.035  Score=44.42  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|+++|.+|+|||||+..+.+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45889999999999999998775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.28  E-value=0.037  Score=45.93  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=22.3

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +-+.|+|-|+-|+||||+++.+...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHH
Confidence            3568999999999999999999877

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.18  E-value=0.057  Score=44.01  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .-+..+..+|.   ..++...+.++|+++.|||++|..+.+-
T Consensus        38 ~Fl~~l~~~l~---~~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          38 TFLGALKSFLK---GTPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             HHHHHHHHHHH---TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCCceEEEEECCCCccHHHHHHHHHHH
Confidence            45566777774   5577899999999999999999988664

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.015  Score=47.05  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 015891           65 AIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      +.+|+|++|+||||+..++.-
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999853

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.92  E-value=0.047  Score=45.47  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=24.8

Q ss_pred             eEEEEE-cCCCChHHHHHHHHHcCCCCCccccceEEEE
Q 015891           64 RAIGVV-GVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC  100 (398)
Q Consensus        64 ~~v~I~-G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~  100 (398)
                      ++|+|+ +-||+||||+|..++..  ....-..++.++
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~--la~~g~~VlliD   38 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVA--LGDRGRKVLAVD   38 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHH--HHhCCCCEEEEe
Confidence            678888 78999999999999765  322223355555

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.89  E-value=0.13  Score=44.34  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcCCC-----CCcccc-ceEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-----VKTQFV-PRIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEG  131 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-----~~~~F~-~~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~  131 (398)
                      .+-..++|.|.+|+|||+|+..+.....     ....-. .+++.. +.+.. ...++...+...-.++....  ...+.
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~-IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~  144 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA-IGQKRSTVAQLVKRLTDADAMKYTIVVSATASD  144 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEE-ESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEee-eCccHHHHHHHHHHhcccccccceEEEEECCCC
Confidence            4456688999999999999887764411     001111 134444 44443 33444444443321111000  00011


Q ss_pred             CchHHH-----HHHHHHHH--hCCCcEEEecCCCCH
Q 015891          132 QGLAFL-----DYVLQQQL--IGKRYLIVLDDFEDM  160 (398)
Q Consensus       132 ~~~~~~-----~~~l~~~l--~~k~~LlVLDdv~~~  160 (398)
                      ....+.     ...+++++  .++..|+++||+...
T Consensus       145 ~~~~r~~~~~~a~tiAEyfrd~G~~VLll~Dsltr~  180 (285)
T d2jdia3         145 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ  180 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcChHHH
Confidence            122221     22345555  357899999999854

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.77  E-value=0.041  Score=45.82  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..-|.|+|.+|+|||||++.+...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            345799999999999999998543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.74  E-value=0.026  Score=44.91  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=9.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --|.|+|.+|+|||||+..+.++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            34789999999999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.64  E-value=0.042  Score=44.36  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|.++|.+|+|||+|...+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998655

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.34  E-value=0.098  Score=44.86  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=29.7

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ..+..+|..  ..+....+.++|+|+.|||+++..+.+-
T Consensus        91 ~~l~~~L~~--~~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_          91 SVFLGWATK--KFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHTT--CSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            345556654  5577889999999999999999999775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.94  E-value=0.018  Score=45.05  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+|+|||||++++...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.16  E-value=0.078  Score=45.68  Aligned_cols=26  Identities=35%  Similarity=0.529  Sum_probs=22.8

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+.|-|+|+|..|.|||||+.++...
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHh
Confidence            46788999999999999999999643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.10  E-value=0.037  Score=46.35  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      +...+.|.+|+|||||.+++..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            45678999999999999999765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.18  Score=43.41  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.+.+.+|+|+|+-+.|||||+..+++.
T Consensus        28 ~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          28 ITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             CCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            4557999999999999999999999875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.094  Score=42.88  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             eEEEEEcCC-CChHHHHHHHHHcC
Q 015891           64 RAIGVVGVA-GVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~-GiGKTtLa~~v~~~   86 (398)
                      +.+.|.|-+ |+||||++..++..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~a   25 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQA   25 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            568899998 99999998888665

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.16  E-value=0.4  Score=43.12  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             CchHHHHHHHHHHH----hCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891          132 QGLAFLDYVLQQQL----IGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL  200 (398)
Q Consensus       132 ~~~~~~~~~l~~~l----~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l  200 (398)
                      ++++.....++-.+    ..+..+++||+|+   |......+...+.  ...++.+|+|||++.++...   +..|.|
T Consensus       334 SgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~a---d~~~~V  408 (427)
T d1w1wa_         334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKS---DALVGV  408 (427)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTC---SEEEEE
T ss_pred             ccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhc---ccEEEE
Confidence            55665444333222    3455689999999   4555555555553  34567899999999988763   445544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.16  E-value=0.063  Score=46.72  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHH
Q 015891           64 RAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      ++-+|+|++|+|||++..++.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            477899999999999998884

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.03  E-value=0.11  Score=47.46  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHc
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      ..--|+|+|.+|+|||||.+++..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            345699999999999999999975

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.80  E-value=0.21  Score=40.21  Aligned_cols=19  Identities=32%  Similarity=0.301  Sum_probs=14.6

Q ss_pred             EEEEcCCCChHHHHHHHHH
Q 015891           66 IGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~   84 (398)
                      +.|+++.|+|||.++..+.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHH
Confidence            4578999999998665543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.78  E-value=0.13  Score=44.06  Aligned_cols=23  Identities=43%  Similarity=0.720  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHc
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .|-|+|+|..|.|||||+.++..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHH
Confidence            47799999999999999999853

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=88.63  E-value=0.12  Score=41.23  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -|+|+|.+++|||||+.++...
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            5999999999999999999754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.10  E-value=0.14  Score=44.15  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHcC
Q 015891           65 AIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .|||+|.+.+|||||..++-+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.55  E-value=0.16  Score=42.26  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHc
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      .+|+|.|-.++|||||+.++..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHh
Confidence            4699999999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.50  E-value=0.15  Score=46.14  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             eeEEEEEcCCCChHHHHHHHHH
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      ..+-+|+|++|+|||++..++.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4467899999999999999884

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.46  E-value=0.23  Score=43.88  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           62 QFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        62 ~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .+-.|.|-|+=|+||||+++.+.+.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3556888899999999999999887

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.55  E-value=0.21  Score=43.30  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      .--+||+|.+.+|||||..++-+.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            345999999999999999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.37  E-value=0.14  Score=44.24  Aligned_cols=17  Identities=35%  Similarity=0.354  Sum_probs=14.1

Q ss_pred             EEEEEcCCCChHHHHHH
Q 015891           65 AIGVVGVAGVGKTTLCQ   81 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~   81 (398)
                      .+.|.|++|+||||.+.
T Consensus        16 ~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEEECCCTTSCHHHHHH
T ss_pred             CEEEEeeCCccHHHHHH
Confidence            46788999999998654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.36  E-value=0.15  Score=44.39  Aligned_cols=18  Identities=28%  Similarity=0.401  Sum_probs=14.6

Q ss_pred             EEEEEcCCCChHHHHHHH
Q 015891           65 AIGVVGVAGVGKTTLCQR   82 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~   82 (398)
                      .+.|.|.+|+||||.+.+
T Consensus        26 ~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             CEEEEECTTSCHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            377889999999986643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.35  E-value=0.48  Score=40.37  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.0

Q ss_pred             CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           61 DQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        61 ~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...-.++|+|++.+|||||+..+.+.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            45567999999999999999999886

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.63  E-value=0.29  Score=43.29  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=27.4

Q ss_pred             HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHH
Q 015891           48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIF   84 (398)
Q Consensus        48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~   84 (398)
                      +.|.+++.   ..+..|-|+|+|..|.|||||+-.+.
T Consensus         5 ~~~~~lm~---~~~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2           5 DQMRSLMD---KVTNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             HHHHHHHH---CGGGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             HHHHHHhc---CcccCcEEEEEeCCCCcHHHHHHHHH
Confidence            45555554   34578899999999999999999885

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.19  E-value=0.22  Score=43.62  Aligned_cols=21  Identities=43%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHcC
Q 015891           66 IGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        66 v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      |+|+|.+.+|||||.+++-+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=84.86  E-value=0.28  Score=43.27  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHcC
Q 015891           64 RAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        64 ~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      -.|.|-|.=|+||||+++.+.+.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999887

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=84.75  E-value=0.22  Score=43.79  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCChHHHHHHHHHcC
Q 015891           63 FRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        63 ~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      ...|.|-|+=|+||||+++.+.+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            456889999999999999999765

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=2.6  Score=34.62  Aligned_cols=43  Identities=19%  Similarity=0.051  Sum_probs=32.2

Q ss_pred             cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891           40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK   86 (398)
Q Consensus        40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~   86 (398)
                      --......++|.+.+..    +......|+|..|+|||.++......
T Consensus        57 t~~Q~~~~~~i~~~~~~----~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          57 TPDQAQAINAVLSDMCQ----PLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             CHHHHHHHHHHHHHHHS----SSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhc----cCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            34456666777777754    56778899999999999998877544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.98  E-value=0.32  Score=39.59  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHc
Q 015891           65 AIGVVGVAGVGKTTLCQRIFH   85 (398)
Q Consensus        65 ~v~I~G~~GiGKTtLa~~v~~   85 (398)
                      -|+|+|-.+.|||||+.++..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            488999999999999999853