Citrus Sinensis ID: 015897
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | 2.2.26 [Sep-21-2011] | |||||||
| O48902 | 437 | Malate dehydrogenase [NAD | N/A | no | 0.922 | 0.839 | 0.832 | 1e-180 | |
| P21528 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.907 | 0.818 | 0.842 | 1e-180 | |
| Q05145 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.939 | 0.848 | 0.794 | 1e-174 | |
| P17606 | 429 | Malate dehydrogenase [NAD | N/A | no | 0.834 | 0.773 | 0.839 | 1e-168 | |
| P46489 | 453 | Malate dehydrogenase [NAD | N/A | no | 0.824 | 0.724 | 0.824 | 1e-167 | |
| P37229 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.849 | 0.782 | 0.815 | 1e-166 | |
| P15719 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.846 | 0.780 | 0.805 | 1e-165 | |
| P52426 | 435 | Malate dehydrogenase [NAD | N/A | no | 0.924 | 0.845 | 0.739 | 1e-163 | |
| Q6MAA3 | 330 | Malate dehydrogenase OS=P | yes | no | 0.718 | 0.866 | 0.569 | 1e-90 | |
| B2UKY5 | 329 | Malate dehydrogenase OS=A | yes | no | 0.723 | 0.875 | 0.546 | 1e-84 |
| >sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/371 (83%), Positives = 333/371 (89%), Gaps = 4/371 (1%)
Query: 13 TETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSV--NQVQAPVAVEQDDPKSK 70
++T SSSQLS S L P+ ++ ISCSV NQVQAP AV+ DPKSK
Sbjct: 11 SKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQAP-AVQTQDPKSK 69
Query: 71 TNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIAL 130
DCYGVFCLTYDLKAEEETKSWKK++ IAVSGAAGMI+NHLLFKLA+GEV GP+QPIAL
Sbjct: 70 P-DCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIAL 128
Query: 131 KLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMER 190
KLLGSERSLQALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPGMER
Sbjct: 129 KLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMER 188
Query: 191 AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL 250
A LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP+IPAKNFHALTRL
Sbjct: 189 AALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRL 248
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKDHKWLEE
Sbjct: 249 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEE 308
Query: 311 FTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAE 370
FTE +QKRGG LI+KWGRSSAAST+VSIVDA++SL+ PTPEGDWFS+GVYT GNPYGIAE
Sbjct: 309 FTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVYTTGNPYGIAE 368
Query: 371 DIVFSMPCRSK 381
DIVFSMPCRSK
Sbjct: 369 DIVFSMPCRSK 379
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Medicago sativa (taxid: 3879) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 2 |
| >sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 631 bits (1627), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/369 (84%), Positives = 335/369 (90%), Gaps = 8/369 (2%)
Query: 19 SSSQLS-LSSTHLSSLRRR---AFRPIIGPRNPTISCSV--NQVQAPVAVEQDDPKSKTN 72
SSSQLS LS T +L R F P+ ++ ISCSV NQVQ P A QD PK K
Sbjct: 17 SSSQLSFLSRTRTRTLPRHYHSTFAPLHRTQHARISCSVAPNQVQVPAAQTQD-PKGKP- 74
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DCYGVFCLTYDLKAEEETKSWKK++NIAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKL
Sbjct: 75 DCYGVFCLTYDLKAEEETKSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKL 134
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS+QALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG+ERA
Sbjct: 135 LGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAA 194
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFAEQGKALNAVASRN KVIVVGNPCNTNALICLKNAP+IPAKNFHALTRLDE
Sbjct: 195 LLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 254
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKD+KWLEE FT
Sbjct: 255 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDNKWLEEEFT 314
Query: 313 ETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
E +QKRGG+LI+KWGRSSAAST+VSIVDA++SL+TPTPEGDWFSSGVYTNGNPYGIAEDI
Sbjct: 315 EKVQKRGGVLIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSSGVYTNGNPYGIAEDI 374
Query: 373 VFSMPCRSK 381
VFSMPCRSK
Sbjct: 375 VFSMPCRSK 383
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1572), Expect = e-174, Method: Compositional matrix adjust.
Identities = 305/384 (79%), Positives = 329/384 (85%), Gaps = 10/384 (2%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPT----ISCSV--NQVQ 57
VA+LSPS T+L + Q SS R F + PR + I CSV NQVQ
Sbjct: 3 VAELSPSY---KTQLKTCQQLSSSLSTRLSDHRKFSLRLLPRPVSVRGGIRCSVAPNQVQ 59
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
APVAV + K +CYG+FCLTYDLKAEEETK+WKKM+ IAVSGAAGMI+NHLLFKLA
Sbjct: 60 APVAVPAEGQTGKP-ECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLA 118
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+GEV GPDQPIALKLLGSERS ALEGVAMELEDSL+PLLR V IGI+PY++F+DAEWAL
Sbjct: 119 SGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWAL 178
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP
Sbjct: 179 LIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 238
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA+I+GLPV
Sbjct: 239 NIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGLPV 298
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 357
K +IKDHKWLEE FT IQKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFSS
Sbjct: 299 KTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSS 358
Query: 358 GVYTNGNPYGIAEDIVFSMPCRSK 381
VYTNGNPYGIAED+VFSMPCRSK
Sbjct: 359 AVYTNGNPYGIAEDLVFSMPCRSK 382
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P17606|MDHP1_SORBI Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 590 bits (1520), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/337 (83%), Positives = 307/337 (91%), Gaps = 5/337 (1%)
Query: 48 TISCSVN---QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
T+ CSV+ QVQ VA + K DC+GVFC TYDLKAE++TKSWKK+VNIAVSGA
Sbjct: 37 TVRCSVDAAKQVQDGVATAEAPATRK--DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGA 94
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI
Sbjct: 95 AGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI 154
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+FED +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNP
Sbjct: 155 DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 214
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 215 CNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 274
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS 344
PDFLNA+I+G PVKE+IKD KWLEE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KS
Sbjct: 275 PDFLNAKIDGRPVKEVIKDTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKS 334
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
LVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSK
Sbjct: 335 LVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSK 371
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P46489|MDHP_FLABI Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/337 (82%), Positives = 310/337 (91%), Gaps = 9/337 (2%)
Query: 48 TISCSV---NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
+I CSV +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGA
Sbjct: 65 SIRCSVTSSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGA 118
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI
Sbjct: 119 AGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGI 178
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+F+DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNP
Sbjct: 179 DPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNP 238
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 239 CNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 298
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS 344
PDFLNA+I+G+PV E+I+D KWLE+ FT +Q RGG+LIKKWGRSSAASTAVSIVDA++S
Sbjct: 299 PDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRS 358
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
LVTPTPEGDWFS+GVYTNGNPYGIAEDIVFSMPCRSK
Sbjct: 359 LVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSK 395
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Flaveria bidentis (taxid: 4224) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P37229|MDHP2_SORBI Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 584 bits (1505), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/342 (81%), Positives = 306/342 (89%), Gaps = 4/342 (1%)
Query: 44 PRNPTISCSV----NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNI 99
PR T+ CSV QVQ VA + N+C+GVFC YDLKAE++TKSWKK+V I
Sbjct: 33 PRLATVRCSVVDAAKQVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLVTI 92
Query: 100 AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLRE 159
AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGV MELEDSL+PLLRE
Sbjct: 93 AVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLRE 152
Query: 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219
V IGI PYE+F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVASRNVKV+
Sbjct: 153 VSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVL 212
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279
VVGNPCNTNALICLKN P+IPAKNFHALTRLDENRAKCQ+ALKAGVFYDKVSN+TIWGNH
Sbjct: 213 VVGNPCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNH 272
Query: 280 STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
STTQVPDFLNA+I+G PVKEII+D KWLEE FT T+QKRGG+LI+KWGRSSAASTAVSIV
Sbjct: 273 STTQVPDFLNAKIDGRPVKEIIQDTKWLEEEFTMTVQKRGGVLIQKWGRSSAASTAVSIV 332
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
DA+KSLVTPTPEG+WFS+GVYT GNPYGIAEDIVFSMPCRSK
Sbjct: 333 DAIKSLVTPTPEGEWFSTGVYTTGNPYGIAEDIVFSMPCRSK 374
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P15719|MDHP_MAIZE Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 313/349 (89%), Gaps = 12/349 (3%)
Query: 44 PRNP------TISCSVN---QVQAPVA--VEQDDPKSKTNDCYGVFCLTYDLKAEEETKS 92
PR P T+ CSV+ Q Q VA V + P S+ +C+GVFC TYDLKAE++TKS
Sbjct: 27 PRRPRRAPLATVRCSVDATKQAQDGVATAVATEAPASR-KECFGVFCTTYDLKAEDKTKS 85
Query: 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152
W+K+VN+AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDS
Sbjct: 86 WRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 145
Query: 153 LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212
L+PLLREV IGI+PY +F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVA
Sbjct: 146 LYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 205
Query: 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272
SRN +V+VVGNPCNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN
Sbjct: 206 SRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 265
Query: 273 MTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
+TIWGNHSTTQVPDFLNA+I+G PVKE+IKD KWLEE FT T+QKRGG+LI+KWGRSSAA
Sbjct: 266 VTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTLTVQKRGGVLIQKWGRSSAA 325
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
STAVSIVDA++SLVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSK
Sbjct: 326 STAVSIVDAIRSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSK 374
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1477), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/384 (73%), Positives = 319/384 (83%), Gaps = 16/384 (4%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIG----PRNPTISCSV--NQVQ 57
VA+LSP T+ + HLS L ++G R I CS+ NQVQ
Sbjct: 3 VAELSPCYQTQIVK---------PPHLSWLSNNHKLNLLGLPKASRITEICCSLAPNQVQ 53
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
PVAV +S +CYGVFC TYDLK EEET+SWKKM+ IA+SGAAG I+NHLLFKLA
Sbjct: 54 TPVAVPTG-AQSIKPECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTISNHLLFKLA 112
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+G V GPDQPIALKLLGSE+S ALEGVAMELEDSL+PLLREV IGI+PYE+FEDAEWAL
Sbjct: 113 SGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWAL 172
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDING+I+AEQGKALNAVAS NVKVIVVGNPCNTNALICLKN P
Sbjct: 173 LIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPP 232
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH+LTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDF+NA+I G+PV
Sbjct: 233 NIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFVNAQIGGVPV 292
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 357
KE+IK KWLEE FTE ++KRGG+LI+KWGRSSAASTAVSIVDA+ L+TPTP GDWF S
Sbjct: 293 KEVIKAQKWLEEEFTEKVRKRGGVLIQKWGRSSAASTAVSIVDAINPLITPTPPGDWFPS 352
Query: 358 GVYTNGNPYGIAEDIVFSMPCRSK 381
GVYTNGNPYGIAED+++SMPCRSK
Sbjct: 353 GVYTNGNPYGIAEDLIYSMPCRSK 376
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q6MAA3|MDH_PARUW Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/286 (56%), Positives = 212/286 (74%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ IA+SG AG IA LLF+LA+GE+ GP+Q I L++L +L ALEGV ME+ED FPL
Sbjct: 5 IKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPL 64
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L +KI +PY+ FED ++ALLIGAK RGPGMER LL N +IF QG+ALNAVA +
Sbjct: 65 LSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSA 124
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
K+ VVGNPCNTN LI L NAPS+ +NF+A+TRLD+NRA L+ K+ V VS +TIW
Sbjct: 125 KIFVVGNPCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQKSQVSTKDVSCVTIW 184
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336
GNHS TQVPDF+NA+I+ PV+ II D +WLE+ F E++QKRG +I+ G+SSAAS A
Sbjct: 185 GNHSATQVPDFVNAKISQKPVETIIPDRQWLEKDFIESVQKRGAAIIQARGKSSAASAAS 244
Query: 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
+++DAM+ + PTP G WFS+ + ++GNPYGI E ++FS PCR KK
Sbjct: 245 ALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKK 290
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B2UKY5|MDH_AKKM8 Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/289 (54%), Positives = 207/289 (71%), Gaps = 1/289 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K + + V+GAAG IA LLF++A+G +LGPDQPI L+LL ++ ALEGV MEL D+
Sbjct: 2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPL+ E+ +P E F A W LL+G+ PR GMER LLDING++F QG+A+ A+
Sbjct: 62 FPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++V+V+VVGNPCNTNALI + NA +P+ F A+TRLDENRAK QLA KAGV +V+NM
Sbjct: 122 KDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
IWGNHS+TQ PDF NARI G PV E+IKD +WL+ F T+Q+RG +IK G SSAAS
Sbjct: 182 AIWGNHSSTQYPDFTNARIGGKPVTEVIKDTEWLKGDFITTVQQRGAAIIKARGASSAAS 241
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
A + VD ++SL T TPEGDW+S V ++G+ YGI + ++ S P R+ K
Sbjct: 242 AASAAVDTVRSLATQTPEGDWYSVAVCSDGS-YGIEKGLICSFPVRTTK 289
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Akkermansia muciniphila (strain ATCC BAA-835) (taxid: 349741) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | ||||||
| TAIR|locus:2161188 | 443 | AT5G58330 [Arabidopsis thalian | 0.844 | 0.758 | 0.857 | 2.4e-156 | |
| TIGR_CMR|CBU_1241 | 328 | CBU_1241 "malate dehydrogenase | 0.741 | 0.899 | 0.521 | 1.5e-74 | |
| UNIPROTKB|P0A5J6 | 329 | mdh "Malate dehydrogenase" [My | 0.713 | 0.863 | 0.519 | 8.4e-74 | |
| ZFIN|ZDB-GENE-040204-1 | 333 | mdh1a "malate dehydrogenase 1a | 0.753 | 0.900 | 0.472 | 1.1e-66 | |
| ZFIN|ZDB-GENE-030131-7655 | 333 | mdh1b "malate dehydrogenase 1b | 0.713 | 0.852 | 0.482 | 3.2e-65 | |
| DICTYBASE|DDB_G0280255 | 333 | mdhC "malate dehydrogenase" [D | 0.731 | 0.873 | 0.469 | 5.2e-65 | |
| UNIPROTKB|Q5ZME2 | 334 | MDH1 "Malate dehydrogenase, cy | 0.721 | 0.859 | 0.488 | 1.1e-64 | |
| UNIPROTKB|E2QV08 | 348 | MDH1 "Malate dehydrogenase" [C | 0.751 | 0.859 | 0.461 | 3.7e-64 | |
| UNIPROTKB|Q3T145 | 334 | MDH1 "Malate dehydrogenase, cy | 0.753 | 0.898 | 0.469 | 7.6e-64 | |
| UNIPROTKB|P11708 | 334 | MDH1 "Malate dehydrogenase, cy | 0.751 | 0.895 | 0.461 | 7.6e-64 |
| TAIR|locus:2161188 AT5G58330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
Identities = 289/337 (85%), Positives = 314/337 (93%)
Query: 46 NPTISCSVNQ-VQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
N ISCSV+Q QAPVAV+++ +CYGVFCLTYDLKAEEET+SWKK++NIAVSGA
Sbjct: 48 NSKISCSVSQNSQAPVAVQENGLVKTKKECYGVFCLTYDLKAEEETRSWKKLINIAVSGA 107
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS+QALEGVAMELEDSLFPLLREV IG
Sbjct: 108 AGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVDIGT 167
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+P E+F+D EWA+LIGAKPRGPGMERA LLDINGQIFAEQGKALN AS NVKV+VVGNP
Sbjct: 168 DPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVKVLVVGNP 227
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV
Sbjct: 228 CNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 287
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS 344
PDFLNARINGLPVKE+I DHKWLEEGFTE++QKRGGLLI+KWGRSSAASTAVSIVDA+KS
Sbjct: 288 PDFLNARINGLPVKEVITDHKWLEEGFTESVQKRGGLLIQKWGRSSAASTAVSIVDAIKS 347
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
LVTPTPEGDWFS+GVYT+GNPYGI E +VFSMPCRSK
Sbjct: 348 LVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSK 384
|
|
| TIGR_CMR|CBU_1241 CBU_1241 "malate dehydrogenase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 155/297 (52%), Positives = 197/297 (66%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF+LA+G+ G D + L LL E +L AL+GV MELED F
Sbjct: 3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAF 62
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLLR + + +P F D WALL+GA PR GMER LL+ NG IFA QGKA+N A+
Sbjct: 63 PLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAAS 122
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+V++ VVGNPCNTN LI + NAP IP F+A+TRLD+NRA QLALKAGV V NM
Sbjct: 123 DVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMI 182
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334
IWGNHS+TQ PDF +A I+G P E+I+D WL F IQ+RG +IK G SSAAS
Sbjct: 183 IWGNHSSTQYPDFYHATIDGKPATEVIRDKNWLLNDFISVIQQRGAAVIKARGASSAASA 242
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK-VTSVCREM 390
A + +D++ SL+ TP D +S + G YG+ E ++FS PCR++ V SV E+
Sbjct: 243 ANAALDSVWSLINTTPADDNYSVALCAQGQ-YGVDEGLIFSFPCRTENGVVSVIEEI 298
|
|
| UNIPROTKB|P0A5J6 mdh "Malate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 148/285 (51%), Positives = 192/285 (67%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +AV+GAAG I LLF+LA+G +LGPD+PI L+LL E +LQALEGV MEL+D FPL
Sbjct: 6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPL 65
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L V+IG +P ++F+ ALL+GA+PRG GMER+ LL+ NG IF QGKALNAVA+ +V
Sbjct: 66 LSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDV 125
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+V V GNP NTNALI + NAP IP + F ALTRLD NRA QLA K G + MTIW
Sbjct: 126 RVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIW 185
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336
GNHS TQ PD +A + G E++ D W+E+ F T+ KRG +I G SSAAS A
Sbjct: 186 GNHSATQYPDLFHAEVAGKNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAAS 245
Query: 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
+ +DA + + TP DW S V ++G+ YG+ E ++ S P +K
Sbjct: 246 ATIDAARDWLLGTPADDWVSMAVVSDGS-YGVPEGLISSFPVTTK 289
|
|
| ZFIN|ZDB-GENE-040204-1 mdh1a "malate dehydrogenase 1a, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 145/307 (47%), Positives = 196/307 (63%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQPI L LL L L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDITPMLPVLDGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N IF QG+AL A +
Sbjct: 65 LREV-IPTDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGEALEKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA+ Q+A++ GV D V N+TI
Sbjct: 124 VKVLVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRARSQVAMRVGVPSDSVKNVTI 183
Query: 276 WGNHSTTQVPDFLNARI--NGLPVK--EIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A + NG + + + D WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVHHAIVTRNGKEIAAFDAVNDESWLKGDFISTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK-KVTSVCREM 390
S A +I D M+ + TP+G+W S G+Y++GN YG+ +D+++S P + K K V +
Sbjct: 244 MSAAKAICDHMRDIWFGTPDGEWVSMGIYSSGNSYGVPDDLMYSFPVKIKNKSWKVVDGL 303
Query: 391 VIMNLSR 397
I + SR
Sbjct: 304 SINDFSR 310
|
|
| ZFIN|ZDB-GENE-030131-7655 mdh1b "malate dehydrogenase 1b, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 140/290 (48%), Positives = 186/290 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQP+ L LL L LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLVLLLLDITPMLPVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + ++ F+D + A+L+G+ PR GMER LL N IF QG+AL+ A +
Sbjct: 65 LREV-IPTDKEDVAFKDLDAAILVGSMPRREGMERKDLLKANVAIFKSQGEALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA Q+AL+ G+ + V N+ I
Sbjct: 124 VKVLVVGNPANTNCLIAAKSAPSIPKENFSCLTRLDHNRASSQVALRCGIAPNNVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI----IKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD + ++N E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVHHCKVNVQGKDETAFDAVKDDAWLKGEFISTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
S A +I D M+ + T TPEG++ S GVY+ GN YG+ ED+++S P K
Sbjct: 244 MSAAKAICDHMRDIWTGTPEGEFISMGVYSTGNSYGVPEDLIYSFPISIK 293
|
|
| DICTYBASE|DDB_G0280255 mdhC "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 140/298 (46%), Positives = 189/298 (63%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+++N+ ++GAAG IA L+F + G++ G DQ I L LL + + +L+G+ ME++D +
Sbjct: 4 EVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAY 63
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PL+ + I + E F +A+L+GA PR GMERA LL N IF QGKAL A++
Sbjct: 64 PLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANK 123
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
NVKV+VVGNP NTNALI +A IP +NF LTRLD+NRAK Q+ALKAGV V N+
Sbjct: 124 NVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVI 183
Query: 275 IWGNHSTTQVPDF----LNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330
IWGNHS+TQ PD+ +N P+ IKD KWL+ F T+QKRG +I SS
Sbjct: 184 IWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQKRGAAVIAARKLSS 243
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP--CRSKKVTSV 386
AAS A +I D M V T EG++ S GVY++G+ YG+ E ++FS P C + K T V
Sbjct: 244 AASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGS-YGVPEGLIFSFPVKCANGKYTIV 300
|
|
| UNIPROTKB|Q5ZME2 MDH1 "Malate dehydrogenase, cytoplasmic" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 143/293 (48%), Positives = 190/293 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G +QP+ L LL + LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A +
Sbjct: 65 LREV-IPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRAK Q+ALK GV + V N+ I
Sbjct: 124 VKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A++N G + V E IKD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVNHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVT 384
S A +I D ++ + TP G++ S GV ++GN YG+ ED+++S P K T
Sbjct: 244 MSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKT 296
|
|
| UNIPROTKB|E2QV08 MDH1 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 142/308 (46%), Positives = 194/308 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 19 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 78
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + ++ F+D + A+L+G+ PR GMER LL N +IF QG AL A ++
Sbjct: 79 LKDV-IATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKS 137
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 138 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 197
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI-----IKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330
WGNHS+TQ PD +A++ L KE+ +KD WL+ F T+Q+RG +IK SS
Sbjct: 198 WGNHSSTQYPDVSHAKVK-LQGKEVGVYDALKDESWLKGEFITTVQQRGAAVIKARKLSS 256
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVT-SVCRE 389
A S A +I D ++ + TPEG++ S G+ ++GNPYG+ +D+++S P K T +
Sbjct: 257 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKIVEG 316
Query: 390 MVIMNLSR 397
+ I + SR
Sbjct: 317 LTINDFSR 324
|
|
| UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 144/307 (46%), Positives = 194/307 (63%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A++ G + V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK-KVTSVCREM 390
S A +I D ++ + TPEG++ S G+ ++GN YGI +D+++S P K K V +
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGL 303
Query: 391 VIMNLSR 397
I + SR
Sbjct: 304 PINDFSR 310
|
|
| UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 142/308 (46%), Positives = 194/308 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI-----IKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330
WGNHS+TQ PD +A++ L KE+ +KD WL+ F T+Q+RG +IK SS
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK-KVTSVCRE 389
A S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K K +
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
Query: 390 MVIMNLSR 397
+ I + SR
Sbjct: 303 LPINDFSR 310
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9BVK0 | MDH_DELAS | 1, ., 1, ., 1, ., 3, 7 | 0.5206 | 0.7185 | 0.8719 | yes | no |
| O48902 | MDHP_MEDSA | 1, ., 1, ., 1, ., 8, 2 | 0.8328 | 0.9221 | 0.8398 | N/A | no |
| B6IZN7 | MDH_COXB2 | 1, ., 1, ., 1, ., 3, 7 | 0.5218 | 0.7412 | 0.8993 | yes | no |
| P52426 | MDHP_SPIOL | 1, ., 1, ., 1, ., 8, 2 | 0.7395 | 0.9246 | 0.8459 | N/A | no |
| Q9RXI8 | MDH_DEIRA | 1, ., 1, ., 1, ., 3, 7 | 0.5034 | 0.7236 | 0.8727 | yes | no |
| Q21K60 | MDH_SACD2 | 1, ., 1, ., 1, ., 3, 7 | 0.5086 | 0.7160 | 0.8715 | yes | no |
| B0SF41 | MDH_LEPBA | 1, ., 1, ., 1, ., 3, 7 | 0.5204 | 0.7311 | 0.8899 | yes | no |
| B9MBP0 | MDH_ACIET | 1, ., 1, ., 1, ., 3, 7 | 0.5137 | 0.7185 | 0.8719 | yes | no |
| Q5SKV7 | MDH_THET8 | 1, ., 1, ., 1, ., 3, 7 | 0.5138 | 0.7185 | 0.8746 | yes | no |
| P46489 | MDHP_FLABI | 1, ., 1, ., 1, ., 8, 2 | 0.8249 | 0.8241 | 0.7240 | N/A | no |
| A1W9K7 | MDH_ACISJ | 1, ., 1, ., 1, ., 3, 7 | 0.5137 | 0.7185 | 0.8719 | yes | no |
| A2SHT9 | MDH_METPP | 1, ., 1, ., 1, ., 3, 7 | 0.5156 | 0.7110 | 0.8628 | yes | no |
| P61977 | MDH_THET2 | 1, ., 1, ., 1, ., 3, 7 | 0.5138 | 0.7185 | 0.8746 | yes | no |
| A1KI28 | MDH_MYCBP | 1, ., 1, ., 1, ., 3, 7 | 0.5192 | 0.7135 | 0.8632 | yes | no |
| B2UKY5 | MDH_AKKM8 | 1, ., 1, ., 1, ., 3, 7 | 0.5467 | 0.7236 | 0.8753 | yes | no |
| A9KFT9 | MDH_COXBN | 1, ., 1, ., 1, ., 3, 7 | 0.5151 | 0.7412 | 0.8993 | yes | no |
| A1TP96 | MDH_ACIAC | 1, ., 1, ., 1, ., 3, 7 | 0.5191 | 0.7110 | 0.8628 | yes | no |
| B2HRH5 | MDH_MYCMM | 1, ., 1, ., 1, ., 3, 7 | 0.5099 | 0.7537 | 0.9118 | yes | no |
| P0A5J7 | MDH_MYCBO | 1, ., 1, ., 1, ., 3, 7 | 0.5192 | 0.7135 | 0.8632 | yes | no |
| P21528 | MDHP_PEA | 1, ., 1, ., 1, ., 8, 2 | 0.8428 | 0.9070 | 0.8185 | N/A | no |
| A5WGM2 | MDH_PSYWF | 1, ., 1, ., 1, ., 3, 7 | 0.5087 | 0.7110 | 0.8654 | yes | no |
| P37229 | MDHP2_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8157 | 0.8492 | 0.7824 | N/A | no |
| Q05145 | MDHP_MESCR | 1, ., 1, ., 1, ., 8, 2 | 0.7942 | 0.9396 | 0.8480 | N/A | no |
| Q83C87 | MDH_COXBU | 1, ., 1, ., 1, ., 3, 7 | 0.5218 | 0.7412 | 0.8993 | yes | no |
| Q4FQU7 | MDH_PSYA2 | 1, ., 1, ., 1, ., 3, 7 | 0.5052 | 0.7160 | 0.8662 | yes | no |
| P10584 | MDH_THETH | 1, ., 1, ., 1, ., 3, 7 | 0.5138 | 0.7185 | 0.8746 | yes | no |
| P0A5J6 | MDH_MYCTU | 1, ., 1, ., 1, ., 3, 7 | 0.5192 | 0.7135 | 0.8632 | yes | no |
| Q6MAA3 | MDH_PARUW | 1, ., 1, ., 1, ., 3, 7 | 0.5699 | 0.7185 | 0.8666 | yes | no |
| B0SN74 | MDH_LEPBP | 1, ., 1, ., 1, ., 3, 7 | 0.5204 | 0.7311 | 0.8899 | yes | no |
| P15719 | MDHP_MAIZE | 1, ., 1, ., 1, ., 8, 2 | 0.8051 | 0.8467 | 0.7800 | N/A | no |
| B6J7Q0 | MDH_COXB1 | 1, ., 1, ., 1, ., 3, 7 | 0.5218 | 0.7412 | 0.8993 | yes | no |
| A9NDV1 | MDH_COXBR | 1, ., 1, ., 1, ., 3, 7 | 0.5218 | 0.7412 | 0.8993 | yes | no |
| P17606 | MDHP1_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8397 | 0.8341 | 0.7738 | N/A | no |
| A5U1T8 | MDH_MYCTA | 1, ., 1, ., 1, ., 3, 7 | 0.5192 | 0.7135 | 0.8632 | yes | no |
| A0PVV1 | MDH_MYCUA | 1, ., 1, ., 1, ., 3, 7 | 0.5099 | 0.7537 | 0.9118 | yes | no |
| C1AMN4 | MDH_MYCBT | 1, ., 1, ., 1, ., 3, 7 | 0.5192 | 0.7135 | 0.8632 | yes | no |
| A0QCI6 | MDH_MYCA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5192 | 0.7135 | 0.8632 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.983 |
| 4th Layer | 1.1.1.82 | 0.979 |
| 3rd Layer | 1.1.1.37 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_VIII0243 | malate dehydrogenase (EC-1.1.1.37 1.1.1.82) (442 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.4745.2.1 | annotation not avaliable (67 aa) | • | 0.505 | |||||||
 | gw1.I.5517.1 | hypothetical protein (68 aa) | • | 0.502 | |||||||
 | eugene3.88080001 | hypothetical protein (69 aa) | • | 0.426 | |||||||
 | eugene3.112590001 | annotation not avaliable (69 aa) | • | 0.426 | |||||||
 | eugene3.00150397 | hypothetical protein (58 aa) | • | 0.407 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 398 | |||
| PLN00112 | 444 | PLN00112, PLN00112, malate dehydrogenase (NADP); P | 0.0 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 0.0 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 0.0 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 1e-172 | |
| PRK05442 | 326 | PRK05442, PRK05442, malate dehydrogenase; Provisio | 1e-161 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 1e-160 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 1e-131 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 1e-103 | |
| PLN00135 | 309 | PLN00135, PLN00135, malate dehydrogenase | 5e-83 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 1e-66 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 3e-63 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 2e-61 | |
| cd05295 | 452 | cd05295, MDH_like, Malate dehydrogenase-like | 8e-57 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 2e-43 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 4e-43 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 1e-12 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 5e-12 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 8e-11 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 1e-10 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 2e-07 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 9e-07 | |
| cd05290 | 307 | cd05290, LDH_3, A subgroup of L-lactate dehydrogen | 2e-06 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 9e-06 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 1e-05 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 3e-04 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 3e-04 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 0.002 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 0.002 |
| >gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Score = 739 bits (1910), Expect = 0.0
Identities = 314/386 (81%), Positives = 340/386 (88%), Gaps = 7/386 (1%)
Query: 2 AVVAQLSPSSYTET-----TRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV 56
VA+LS T +RL SSQL LS THLS+ RRA P N ISCSVNQ
Sbjct: 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQA 60
Query: 57 -QAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFK 115
QAP AV++ K+K +CYGVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NHLLFK
Sbjct: 61 SQAPAAVQEKGVKTK-KECYGVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFK 119
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
LA+GEV GPDQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+F+DAEW
Sbjct: 120 LASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
ALLIGAKPRGPGMERA LLDINGQIFAEQGKALN VASRNVKVIVVGNPCNTNALICLKN
Sbjct: 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL 295
AP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+INGL
Sbjct: 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGL 299
Query: 296 PVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWF 355
PVKE+I DHKWLEE FT +QKRGG+LIKKWGRSSAASTAVSI DA+KSLVTPTPEGDWF
Sbjct: 300 PVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWF 359
Query: 356 SSGVYTNGNPYGIAEDIVFSMPCRSK 381
S+GVYT+GNPYGIAE +VFSMPCRSK
Sbjct: 360 STGVYTDGNPYGIAEGLVFSMPCRSK 385
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Length = 444 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 593 bits (1530), Expect = 0.0
Identities = 265/332 (79%), Positives = 294/332 (88%), Gaps = 5/332 (1%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIA 109
+ QVQA VA + + T CYGVFCL+YDLK E++ TKSWKK VN+AVSGAAGMI+
Sbjct: 1 AAKQVQAGVATAE---AAATKKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMIS 57
Query: 110 NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169
NHLLF LA+GEV G DQPIALKLLGSERS +ALEGVAMELEDSL+PLLREV IGI+PYE+
Sbjct: 58 NHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV 117
Query: 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229
FEDA+WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+N KV+VVGNPCNTNA
Sbjct: 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNA 177
Query: 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLN 289
LI +KNAP+IP KNFHALTRLDENRAKCQLALK+G FY VSN+TIWGNHSTTQVPDF+N
Sbjct: 178 LIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVN 237
Query: 290 ARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPT 349
A+I G P KE+IKD KWLEE FT T+QKRGG LIKKWGRSSAASTAVSI DA+KSLV PT
Sbjct: 238 AKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPT 297
Query: 350 PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
PEGDWFS+GVYT+GNPYGIAE +VFSMPCRSK
Sbjct: 298 PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSK 329
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This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 532 bits (1374), Expect = 0.0
Identities = 179/287 (62%), Positives = 211/287 (73%), Gaps = 1/287 (0%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF++A+GE+ GPDQP+ L+LL ++L+ALEGVAMELED F
Sbjct: 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLL E+ I +P F+DA+WALL+GAKPRGPGMERA LL NG+IF QGKALN VASR
Sbjct: 61 PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+VKV+VVGNPCNTNALI +KNAP IP NF A+TRLD NRAK QLA KAGV V NM
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334
IWGNHS TQ PDF NA I G P E+I D WLE+ F T+QKRG +IK G SSAAS
Sbjct: 181 IWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAASA 240
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
A + +D M+ V TPEGDWFS V ++G YGI E ++FS P RSK
Sbjct: 241 ANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSK 286
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MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 482 bits (1242), Expect = e-172
Identities = 175/289 (60%), Positives = 210/289 (72%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK V +AV+GAAG I LLF++A+GE+ G DQP+ L LL +++ALEGVAMELED
Sbjct: 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V +P E F+D + ALL+GA PR PGMERA LL NG+IF EQGKALN VA
Sbjct: 61 FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP IP KNF A+TRLD NRAK QLA KAGV V N+
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
IWGNHS TQVPDF +A ++G PVKE+IKD KWLE F T+Q+RG +I+ G SSAAS
Sbjct: 181 IIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
A + +D ++ VT TPEGDW S GVY++GNPYGI E I+FS P K
Sbjct: 241 AANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKG 289
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This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 455 bits (1173), Expect = e-161
Identities = 161/288 (55%), Positives = 205/288 (71%), Gaps = 1/288 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++A+G++LG DQP+ L+LL +L+ALEGV MEL+D
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V I +P F+DA+ ALL+GA+PRGPGMER LL+ NG IF QGKALN VA+
Sbjct: 62 FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
R+VKV+VVGNP NTNALI +KNAP +PA+NF A+TRLD NRA QLA KAGV + M
Sbjct: 122 RDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS TQ PDF +A I+G P E+I D WLE+ F T+QKRG +I+ G SSAAS
Sbjct: 182 TVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSAAS 241
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
A + +D ++ V TPEGDW S GV ++G+ YGI E ++F P +
Sbjct: 242 AANAAIDHVRDWVLGTPEGDWVSMGVPSDGS-YGIPEGLIFGFPVTCE 288
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Length = 326 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 453 bits (1167), Expect = e-160
Identities = 159/289 (55%), Positives = 198/289 (68%), Gaps = 3/289 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+++ ++GAAG I +LLF +A+GE+ G DQP+ L LL +++ALEGV MEL+D FPL
Sbjct: 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V I +P E F+D + A+L+GA PR PGMERA LL N +IF EQG+ALN VA V
Sbjct: 61 LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LKNAP++P KNF ALTRLD NRAK Q+A K GV V N+ IW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
GNHS TQVPD NA + G E + D +WL + F +T+QKRG +IKK G SSAAS
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
A +I D +K + TP G+ S GVY+ GNPYGI IVFS PC K
Sbjct: 241 AAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKG 289
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-131
Identities = 151/289 (52%), Positives = 191/289 (66%), Gaps = 5/289 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL +A G+V GPDQP+ L LL +L+ALEGV MEL+D FPL
Sbjct: 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPL 62
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V +P E F+D + A+L+GA PR GMER LL N +IF EQG+AL+ A +NV
Sbjct: 63 LKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNV 122
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LK APSIP +NF ALTRLD NRAK Q+ALK GV V N+ IW
Sbjct: 123 KVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIW 182
Query: 277 GNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
GNHS+TQ PD +A + G P +E +KD WL F T+QKRG +IK SSA
Sbjct: 183 GNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSSAM 242
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 381
S A +I D + TPEG++ S GVY++G+ YG+ E ++FS P K
Sbjct: 243 SAAKAICDHVHDWWFGTPEGEFVSMGVYSDGS-YGVPEGLIFSFPVTCK 290
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = e-103
Identities = 142/294 (48%), Positives = 186/294 (63%), Gaps = 6/294 (2%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V+GAAG I LL +A G +LG DQPI L LL +++ LEGV MEL D FPLL
Sbjct: 2 VVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLD 61
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V +P F D + A+L+GA PR GMER LL N +IF EQG+AL+ +A ++ KV
Sbjct: 62 GVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKV 121
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNAL+ APSIP KNF ALTRLD NRA Q+A +AGV V N+ IWGN
Sbjct: 122 LVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGN 181
Query: 279 HSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334
HS+TQ PD +A + PV+E IKD +L+ F T+Q+RG +I+ SSA S
Sbjct: 182 HSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALSA 241
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP--CRSKKVTSV 386
A + VD M V TPEG + S GVY++G+PYG+ + ++FS P C++ + V
Sbjct: 242 AKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIV 295
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 5e-83
Identities = 116/266 (43%), Positives = 158/266 (59%), Gaps = 5/266 (1%)
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
+A G +LGPDQP+ L +L + +AL GV MEL D+ FPLL+ V + E +
Sbjct: 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNI 61
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
A+++G PR GMER ++ N I+ Q AL A+ + KV+VV NP NTNALI +
Sbjct: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF 121
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-- 293
APSIP KN LTRLD NRA Q++ + GV V N+ IWGNHS+TQ PD +A +
Sbjct: 122 APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKTP 181
Query: 294 --GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPE 351
PV+E++ D WL F T+Q+RG +IK SSA S A S D ++ V TPE
Sbjct: 182 SGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 241
Query: 352 GDWFSSGVYTNGNPYGIAEDIVFSMP 377
G W S GVY++G+ YG+ +++S P
Sbjct: 242 GTWVSMGVYSDGS-YGVPPGLIYSFP 266
|
Length = 309 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 1e-66
Identities = 89/285 (31%), Positives = 124/285 (43%), Gaps = 54/285 (18%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-L 157
IAV GA G + L F LA G V I L L + + L+GVAM+L+D++ PL
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSV---LLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55
Query: 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V I +PYE F+DA+ ++ R PGM R LL N I E G + + +
Sbjct: 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAW 114
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
+IVV NP + + + + +P + L LD R + LA K GV D V + I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDV-KVYILG 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVS 337
H +QVPD+ RI A S
Sbjct: 173 EHGGSQVPDWSTVRI------------------------------------------ATS 190
Query: 338 IVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
I D ++SL+ EG+ GV NG GI +D+V S+PC K
Sbjct: 191 IADLIRSLL--NDEGEILPVGVRNNGQ-IGIPDDVVVSVPCIVGK 232
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 3e-63
Identities = 84/283 (29%), Positives = 136/283 (48%), Gaps = 16/283 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F L + LG + L L+ + + + EGVA++L + PL
Sbjct: 3 VAVIGA-GNVGSSLAF-LLLLQGLGSE----LVLI--DINEEKAEGVALDLSHAAAPLGS 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+VKI G YE + A+ ++ PR PGM R LL+ N +I + KA+ A +
Sbjct: 55 DVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAI 113
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
V+VV NP + I +K + + + T LD R + LA K GV V I G
Sbjct: 114 VLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI-G 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336
H T VP + A + G P++E++K D + E E ++ G +I+ G + A
Sbjct: 173 EHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAA 232
Query: 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 379
++ +++++ E VY +G YG+ ED+ F +P
Sbjct: 233 ALARMVEAIL--RDEKRVLPVSVYLDGE-YGV-EDVYFGVPAV 271
|
Length = 313 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-61
Identities = 99/271 (36%), Positives = 147/271 (54%), Gaps = 5/271 (1%)
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
L +A G++ G ++P+ L LL +L LE +AMELED FP L + E F+
Sbjct: 1 LSHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFK 59
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D + A L+ + P PG RA LL N IF G+AL+ A VKV+V+GNP NTN L+
Sbjct: 60 DIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLV 119
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
+ +AP + A+NF +L LD NRA ++A K V D + ++ +WGNH+ + V D +A
Sbjct: 120 AMLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAE 179
Query: 292 INGLPVKEIIKD---HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTP 348
+ + D + E F E I +R +++ G +SAAS + + MK+ +
Sbjct: 180 FTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFG 239
Query: 349 TPEGDWFSSGV-YTNGNPYGIAEDIVFSMPC 378
T G+ S G+ GNPYGI ++FS PC
Sbjct: 240 TRPGEVLSMGIPVPEGNPYGIKPGVIFSFPC 270
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 8e-57
Identities = 102/316 (32%), Positives = 153/316 (48%), Gaps = 23/316 (7%)
Query: 83 DLKAEEETKSWKKMVN---IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL 139
+++ EEE + +N + ++ A+ + HL+ LA+GEV G ++ I++ LL S +L
Sbjct: 109 EVEKEEEEL--RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENL 166
Query: 140 QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
+ L+G+ ME+ED FPLLR + + + F+DA +L+ G + G +
Sbjct: 167 EKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVA 226
Query: 200 IFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I G + A +VKVIV G N I +K APSIP KN A+ RL ENRAK
Sbjct: 227 ICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKAL 286
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL------------PVKEIIKDHKW 306
LA K V + ++ +WGN D AR+ PV E++ D KW
Sbjct: 287 LARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKW 346
Query: 307 LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
+ F T++ L +A S A +I + +P G+ FS GV + G Y
Sbjct: 347 INGEFVATLKSLSSSL----NHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGW-Y 401
Query: 367 GIAEDIVFSMPCRSKK 382
GI E IVFSMP + +
Sbjct: 402 GIPEGIVFSMPVKFQN 417
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-43
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
V +AV GA G + + L F LA + L + L L+ + EGVAM+L L
Sbjct: 1 VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
+G + YE +DA+ ++ PR PGM R LL+ N IF + A+ A +
Sbjct: 54 SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAP-DA 112
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
V+VV NP + I K + P + +
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 4e-43
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP----VKEIIKD 303
T LD RA+ LA K GV + N+ + G HS TQ PD+ +A++ +P VKE +KD
Sbjct: 1 TTLDTARARTFLAEKFGV-DPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59
Query: 304 HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 363
W E E +Q G +I+ S+ S A + K+++ T G S GVY +G
Sbjct: 60 TDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGT--GGVLSVGVYLDG 117
Query: 364 NPYGIAEDIVFSMPCRSKK 382
YG +DI FS+P K
Sbjct: 118 Y-YGSPDDIYFSVPVVLGK 135
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N YE +D++ ++ R M R LL ING+I +++ N VI V
Sbjct: 64 GTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVK-KYCPNAFVICVT 122
Query: 223 NPCNTNALICLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + IP+ + LD +R +C LA K GV VS + I G H
Sbjct: 123 NPLDCMVKV-FQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGD 180
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR---GGLLIKKWGRSSAA-STAVS 337
VP +NG+P+ + +K E+ E I+K GG ++K + SA + A +
Sbjct: 181 LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAA 240
Query: 338 IVDAMKSLVTPTPEGDWFSSGVYTNG 363
IV +++ + E VY NG
Sbjct: 241 IVAMIEAYL--KDEKRVLVCSVYLNG 264
|
Length = 319 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +++ GA+G + + LA +V+ + L+ +SL+ L+G+ +++ D+L
Sbjct: 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAA 55
Query: 157 LREVKIGIN-PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ +I I+ ++ ++ PR GM R L N +I + K + A + +
Sbjct: 56 GIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFAPD 114
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
K++VV NP + LK + + F T LD R K +A V +V I
Sbjct: 115 TKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRII 174
Query: 276 WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329
G H + VP + I G+P+K + + E ET++ G +I G S
Sbjct: 175 -GEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS 227
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 8e-11
Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 41/298 (13%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
I++ GA G + L LA G+V+ L +G A+++ +
Sbjct: 1 ARKKISIIGA-GNVGATLAHLLALKELGDVV---------LFD--IVEGVPQGKALDIAE 48
Query: 152 SLFPLLREVKI-GINPYELFEDAEWALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALN 209
+ + KI G N YE ++ ++I A PR PGM R LL IN +I + + +
Sbjct: 49 AAPVEGFDTKITGTNDYEDIAGSD-VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIK 107
Query: 210 AVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYD 268
A + VIVV NP + + LK P + LD R + +A + V
Sbjct: 108 KYAP-DAIVIVVTNPVDAMTYVALK-ESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVK 165
Query: 269 KVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328
V+ + G H + VP + + G+P+++++ K L+E E +K G ++
Sbjct: 166 DVTAFVL-GGHGDSMVPLVRYSTVGGIPLEDLLSKEK-LDE-IVERTRKGGAEIVGLLKT 222
Query: 329 SSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 379
SA A++ +V+A+ K V P Y G YG+ +D+ +P +
Sbjct: 223 GSAYYAPAASIAEMVEAILKDKKRVLPC--------SAYLEGE-YGV-KDVYVGVPVK 270
|
Length = 307 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 26/247 (10%)
Query: 143 EGVAMELEDSLFPLLR-EVKI-GINPYELFEDAEWALLIGA-KPRGPGMERAGLLDINGQ 199
+G A+++ + P+L + K+ G N YE ++ ++I A PR PGM R LL N +
Sbjct: 36 QGKALDISQAA-PILGSDTKVTGTNDYEDIAGSD-VVVITAGIPRKPGMSRDDLLGTNAK 93
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
I E + + A N VIVV NP + + K + + LD R + +
Sbjct: 94 IVKEVAENIKKYAP-NAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI 152
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRG 319
A + GV V M + G H T VP + + G+P+ E+I + ++E T + G
Sbjct: 153 AEELGVSVKDVQAMVL-GGHGDTMVPLPRYSTVGGIPLTELITKEE-IDEIVERT-RNGG 209
Query: 320 GLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
++ SA A+ +V+A+ K V P Y G YGI +DI
Sbjct: 210 AEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPC--------SAYLEGE-YGI-KDI 259
Query: 373 VFSMPCR 379
+P
Sbjct: 260 FVGVPVV 266
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 26/262 (9%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K L L +EG+ A+++ ++ + K+ G N Y +++ ++
Sbjct: 20 LAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R LL +N I E + S N ++VV NP + + + + +
Sbjct: 80 PRKPGMSREDLLSMNAGIVREVTGRI-MEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKER 138
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++ GV V+ + G H VP + + G+PV ++I
Sbjct: 139 VIGQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTVAGIPVADLIS 197
Query: 303 DHKWLEEGFTETIQKRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWF 355
+ E E +K GG ++ + SA A++ V +V+A+ + V P
Sbjct: 198 AERIAE--IVERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPC------ 249
Query: 356 SSGVYTNGNPYGIAEDIVFSMP 377
Y +G YGI + I +P
Sbjct: 250 --AAYLDGQ-YGI-DGIYVGVP 267
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 13/268 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+ +A +L+ + + + +G A++L + L + Y DA+ ++ PR
Sbjct: 19 AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR 78
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244
PG R L++ N I L + ++VV NP + + K + +
Sbjct: 79 KPGETRLDLINRNAPILRSVITNLKK-YGPDAIILVVSNPVDILTYVAQKLSGLPKNRVI 137
Query: 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
+ T LD R + LA K V V + + G H +QV + A + GLP++E+
Sbjct: 138 GSGTLLDSARFRSLLAEKLDVDPQSV-HAYVLGEHGDSQVVAWSTATVGGLPLEELAPFT 196
Query: 305 KWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
K E E ++ G +I+ G ++ A +I D +KS++ E G
Sbjct: 197 KLDLEAIEEEVRTSGYEIIRLKGATNYG-IATAIADIVKSIL--LDERRVLPVSAVQEGQ 253
Query: 365 PYGIAEDIVFSMPCRSKKVTSVCREMVI 392
YGI ED+ S+P V RE V+
Sbjct: 254 -YGI-EDVALSVPAV------VGREGVV 273
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 28/232 (12%)
Query: 160 VKIGINPYELFEDAEWALLIGAKPR---GPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
KI Y+ DA+ ++I A P G +R L N +I E + V V
Sbjct: 56 TKIRAGDYDDCADAD-IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAV 114
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+I++ NP + I K T LD R + +A K GV V+ +
Sbjct: 115 -IILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVL- 172
Query: 277 GNHSTTQVPDFLNARINGLPVKEI--IKDHKWLEEGFTETIQKRGG---LLIKKWGRSSA 331
G H + P + I GLP+ E+ + + +++ + K W +
Sbjct: 173 GEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAGI 232
Query: 332 ASTAVSIVDAMK---SLVTP--TPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
A +A ++ A+ + P T SG Y D+ S+P
Sbjct: 233 AKSASRLIKAILLDERSILPVCTL-----LSGEYGL-------SDVALSLPT 272
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 66/273 (24%), Positives = 101/273 (36%), Gaps = 58/273 (21%)
Query: 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQALE---GVAMELE 150
+AV GAAG I QP++L L SE SL + GVA +L
Sbjct: 1 KVAVLGAAGGIG----------------QPLSLLLKLQPYVSELSLYDIAGAAGVAADLS 44
Query: 151 DSLFPLLREVKIGINPY-------ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
+ + + A+ ++ PR PGM R L ++N I +
Sbjct: 45 HI------PTAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKD 98
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLA 260
A+ A + ++V+ NP N+ I LK +T LD RA +A
Sbjct: 99 LVAAV-AESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVA 157
Query: 261 LKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRG 319
G +V N+ + G HS T +P L ++ G + + IQ G
Sbjct: 158 ELKGKDPMEV-NVPVIGGHSGETIIP--LISQCPGKVLFTEDQLEA-----LIHRIQNAG 209
Query: 320 GLLIK-KWGRSSA--------ASTAVSIVDAMK 343
++K K G SA A +S+V +K
Sbjct: 210 TEVVKAKAGAGSATLSMAFAGARFVLSLVRGLK 242
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 88/303 (29%), Positives = 122/303 (40%), Gaps = 66/303 (21%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQAL---EGVA 146
S KM +AV GAAG I L + LK SE SL + GVA
Sbjct: 4 SALKMFKVAVLGAAGGIGQPLS--------------LLLKQNPHVSELSLYDIVGAPGVA 49
Query: 147 MELE--DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204
+L D+ + G + A+ L+ PR PGM R L + N I +
Sbjct: 50 ADLSHIDTP-AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRD- 107
Query: 205 GKALNAVASRNVKVI--VVGNPCNTNALIC---LKNAPSI-PAKNFHALTRLDENRAKCQ 258
+ AVAS K I +V NP N+ I LK A P K F +T LD RA+
Sbjct: 108 --LVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLF-GVTTLDVVRARKF 164
Query: 259 LALKAGVF-YDKVSNMTIWGNHS-TTQVPDFLNARING-LPVKEIIKDHKWLEEGFTETI 315
+A G+ YD N+ + G HS T VP L ++ LP +++ + T +
Sbjct: 165 VAEALGMNPYD--VNVPVVGGHSGVTIVP--LLSQTGLSLPEEQVEQ--------ITHRV 212
Query: 316 QKRGGLLIK-KWGRSSAA-STA-------VSIVDAMKSLVTPT----------PEGDWFS 356
Q G ++K K G SA S A S++ A++ PE +FS
Sbjct: 213 QVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRPECPFFS 272
Query: 357 SGV 359
S V
Sbjct: 273 SPV 275
|
Length = 321 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSLQALE----GVAMEL 149
+AV GAAG I Q +AL L GSE SL + GVA++L
Sbjct: 3 VAVLGAAGGIG----------------QALALLLKTQLPAGSELSLYDIAPVTPGVAVDL 46
Query: 150 EDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQI---FAEQ 204
S P ++K G +P E A+ L+ R PGM+R+ L ++N I E+
Sbjct: 47 --SHIPTAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEK 104
Query: 205 GKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAK 256
A + ++ NP NT I LK A +T LD R++
Sbjct: 105 V----AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSE 155
|
Length = 312 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 24/246 (9%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
EG A++LED+L L VKI Y +DA+ ++ P+ PG R LL+ N +I
Sbjct: 39 EGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMK 98
Query: 203 EQGKALNAVASRNVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLA 260
+ A + +V NP + T + L P + T LD R + LA
Sbjct: 99 SIVPKIKASGFDGI-FLVASNPVDVITYVVQKLSGLP--KNRVIGTGTSLDTARLRRALA 155
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTET---IQK 317
K V V + G H +Q + + G P+ +++K+ K E E ++K
Sbjct: 156 EKLNVDPRSVHAYVL-GEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRK 214
Query: 318 RGGLLIKKWGRSS--AASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
G +I G + A+ IV A+ ++ + P Y +G YG +D+
Sbjct: 215 AGYEIINGKGATYYGIATALARIVKAILNDENAILPV--------SAYLDGE-YGE-KDV 264
Query: 373 VFSMPC 378
+P
Sbjct: 265 YIGVPA 270
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 60/250 (24%), Positives = 98/250 (39%), Gaps = 29/250 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
EG AM+L+ + L KI Y +DA+ ++ P+ PG R L+ N +I
Sbjct: 34 AEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIM 93
Query: 202 AEQGKALNAVASR-NVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
V S + +V NP + T L P + + T LD R +
Sbjct: 94 KS--IVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFP--KNRVIGSGTVLDTARLRYL 149
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK- 317
LA K GV + + I G H ++VP + +A I G+P+ + +K + E I+K
Sbjct: 150 LAEKLGV-DPQSVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKE 208
Query: 318 ---RGGLLIKKWGRSS--AASTAVSIVDA----MKSLVTPTPEGDWFSSGVYTNGNPYGI 368
+I + G + IV+A ++ Y +G YGI
Sbjct: 209 VRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLP---------VSAYLDGE-YGI 258
Query: 369 AEDIVFSMPC 378
+D+ +P
Sbjct: 259 -KDVYIGVPA 267
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 63/209 (30%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQ---ALEGVAMEL 149
V +AV GAAG I QP++L L L SE +L GVA +L
Sbjct: 1 VKVAVLGAAGGIG----------------QPLSLLLKLNPLVSELALYDIVNTPGVAADL 44
Query: 150 EDSLFPLLREVKIGINPYELFEDAEWALLIGAK--------PRGPGMERAGLLDINGQIF 201
S +V G E + A L GA PR PGM R L +IN I
Sbjct: 45 --SHINTPAKVT-GYLGPEELKKA----LKGADVVVIPAGVPRKPGMTRDDLFNINAGIV 97
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC----LKNAPSIPAKNFHALTRLDENRAKC 257
+ A+ A A ++++ NP N+ I K P + F +T LD RA
Sbjct: 98 RDLATAV-AKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLF-GVTTLDVVRANT 155
Query: 258 QLALKAGVFYDKVSNMTIWGNHS-TTQVP 285
+A G+ KV N+ + G HS T +P
Sbjct: 156 FVAELLGLDPAKV-NVPVIGGHSGVTILP 183
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 100.0 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 100.0 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 100.0 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 100.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 100.0 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 99.97 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.97 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 99.97 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 99.95 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.79 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.54 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.52 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.41 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.37 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.29 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.25 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.23 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.17 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.17 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.16 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.15 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.15 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.14 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.13 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.12 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.12 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.09 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.08 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.08 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.03 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.01 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 97.97 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.87 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.85 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.79 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.76 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.72 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.7 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.64 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.6 | |
| PF11975 | 232 | Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term | 97.6 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.59 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.53 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.41 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 97.4 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.37 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.34 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.34 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.34 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.33 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.32 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.32 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.3 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.26 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 97.26 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.26 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.24 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.22 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.22 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.21 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.21 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.18 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.16 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.15 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 97.11 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.11 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.1 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.09 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.09 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.04 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.03 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.01 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 97.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 97.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 96.92 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.9 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.9 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 96.88 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 96.88 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 96.87 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.82 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.77 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.75 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 96.71 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 96.7 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.7 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.7 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 96.68 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 96.64 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.64 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.62 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 96.61 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.61 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.6 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 96.6 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 96.54 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 96.52 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.51 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 96.51 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 96.49 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.46 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.45 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 96.45 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.44 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 96.43 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 96.4 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 96.4 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.39 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.38 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.38 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.37 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.37 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 96.36 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.36 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 96.35 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.33 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 96.33 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.33 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 96.33 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.31 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.3 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 96.3 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 96.28 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 96.28 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 96.27 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 96.25 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.24 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.21 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 96.21 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.18 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 96.17 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 96.17 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.16 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 96.15 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.15 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 96.14 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 96.11 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.08 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.05 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 96.04 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 96.04 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 96.04 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 96.03 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 96.02 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 96.02 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.99 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.96 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.95 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 95.95 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 95.95 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.95 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.93 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 95.92 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.92 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.92 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.91 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.91 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.9 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 95.88 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.88 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.87 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 95.85 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.84 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 95.83 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 95.82 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.81 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.8 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.79 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.79 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.79 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.78 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.78 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 95.78 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.77 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 95.76 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.76 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 95.75 | |
| PRK05717 | 255 | oxidoreductase; Validated | 95.73 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 95.72 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 95.72 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 95.65 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 95.65 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 95.65 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 95.65 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 95.64 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 95.64 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 95.62 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.61 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 95.61 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 95.61 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.6 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.6 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 95.6 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 95.58 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 95.57 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 95.56 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 95.56 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 95.56 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 95.55 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 95.54 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 95.53 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 95.51 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.51 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 95.49 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.48 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.48 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 95.48 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 95.47 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 95.47 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.45 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.44 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 95.44 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.44 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 95.43 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 95.42 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.42 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.4 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 95.37 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 95.37 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.37 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.35 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.35 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.34 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 95.34 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 95.33 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 95.29 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 95.27 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 95.26 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.26 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.25 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 95.24 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 95.23 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.23 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.23 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 95.22 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 95.2 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 95.2 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 95.2 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 95.19 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 95.19 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 95.18 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 95.18 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 95.15 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 95.15 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 95.15 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 95.14 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 95.14 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.13 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 95.13 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 95.12 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.11 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.1 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.1 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 95.08 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.08 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.07 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.06 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 95.05 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 95.0 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 94.96 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 94.95 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 94.95 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 94.93 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.92 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.92 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 94.91 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.91 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 94.89 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 94.88 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 94.87 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.86 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 94.85 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 94.82 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 94.81 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 94.81 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.8 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.79 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 94.79 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 94.78 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 94.77 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.76 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 94.71 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 94.7 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.69 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 94.69 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.69 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 94.69 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 94.68 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 94.67 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 94.66 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 94.65 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 94.64 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 94.64 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 94.64 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.6 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 94.6 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.59 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.54 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 94.5 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 94.49 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.46 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.44 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 94.41 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.39 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.38 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 94.38 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.37 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 94.34 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.34 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 94.32 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.32 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 94.31 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.27 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.26 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.25 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 94.24 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 94.21 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 94.2 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 94.18 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 94.17 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 94.14 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 94.14 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 94.13 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.12 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.12 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.12 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 94.09 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 94.09 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 94.08 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 94.05 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 94.01 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 93.99 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 93.99 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 93.97 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.95 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 93.92 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 93.92 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 93.92 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 93.91 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.9 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 93.87 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 93.86 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 93.85 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.85 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 93.81 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 93.81 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 93.76 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 93.74 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 93.66 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 93.65 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 93.64 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.63 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 93.62 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 93.58 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.55 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.52 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 93.52 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 93.5 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 93.49 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 93.48 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.44 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 93.39 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 93.3 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.26 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 93.25 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.24 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 93.24 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.22 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 93.19 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 93.17 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 93.14 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 93.11 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 93.09 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 93.02 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 93.02 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 92.99 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.93 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 92.93 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 92.9 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 92.9 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 92.85 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 92.81 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 92.78 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.74 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.74 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 92.7 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 92.67 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.65 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 92.65 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 92.64 | |
| PLN02494 | 477 | adenosylhomocysteinase | 92.61 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.54 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.42 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 92.41 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.41 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 92.4 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 92.37 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 92.34 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 92.32 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 92.31 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 92.31 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.28 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 92.27 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 92.25 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.24 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 92.21 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.11 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 92.1 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 92.09 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.07 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.06 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 92.05 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 92.01 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.97 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.93 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 91.89 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 91.86 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 91.82 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 91.81 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.81 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 91.8 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 91.8 | |
| PLN02928 | 347 | oxidoreductase family protein | 91.79 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 91.77 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 91.73 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 91.58 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 91.54 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 91.52 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 91.37 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 91.36 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 91.35 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 91.33 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 91.33 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.24 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 91.22 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 91.13 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 91.07 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 91.05 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 90.94 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 90.88 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 90.77 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 90.75 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 90.66 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 90.48 | |
| PLN00015 | 308 | protochlorophyllide reductase | 90.39 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 90.38 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 90.31 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 90.15 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 90.07 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 90.07 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 90.01 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 89.99 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 89.97 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.88 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 89.87 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 89.8 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 89.79 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 89.79 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.77 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.68 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 89.62 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 89.61 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 89.57 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 89.54 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 89.53 |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-95 Score=742.28 Aligned_cols=393 Identities=80% Similarity=1.231 Sum_probs=368.8
Q ss_pred eeeeeecCCC-----ccccceeccccccccccccCccccccCCCCCCCCCCeeEEEeccc-ccccccccCCCCCCCCCcc
Q 015897 2 AVVAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCY 75 (398)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (398)
++||+++++. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|+++++++++.| +|||
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (444)
T PLN00112 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECY 79 (444)
T ss_pred CcchhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCce
Confidence 3577777664 568889999999999999999999999999999999999999999 88888888887666 9999
Q ss_pred eeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC
Q 015897 76 GVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP 155 (398)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~ 155 (398)
||||++||+++|+..+.|+++.||+||||+|+||+++++.|+.+++++.+|++.++|+++|+++++++|++|||+|+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~ 159 (444)
T PLN00112 80 GVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP 159 (444)
T ss_pred EEEEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh
Confidence 99999999999999999999999999997799999999999999999988888888888999999999999999999877
Q ss_pred CcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHH
Q 015897 156 LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (398)
Q Consensus 156 ~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~ 235 (398)
++.++.+++++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++++|+++||++|||||+||++++++
T Consensus 160 ~~~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~ 239 (444)
T PLN00112 160 LLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239 (444)
T ss_pred hcCceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHH
Confidence 76678888899999999999999999999999999999999999999999999995479999999999999999999999
Q ss_pred CCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHH
Q 015897 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315 (398)
Q Consensus 236 ~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v 315 (398)
++.+++|+||+||.||++|++++||+++|+++++|+++|||||||++|||+||+++|+|+|+.+++++++|+.++|.+++
T Consensus 240 sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v 319 (444)
T PLN00112 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKV 319 (444)
T ss_pred cCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHHHHHHHH
Confidence 97666699999999999999999999999999999777999999999999999999999999999887778889999999
Q ss_pred HhhhHHHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEee-ccC
Q 015897 316 QKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMV-IMN 394 (398)
Q Consensus 316 ~~~~~~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~-~l~ 394 (398)
+++|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+++|++||+||++|++|+ ++++ +|+
T Consensus 320 ~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv--~~Iv~el~ 397 (444)
T PLN00112 320 QKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGD--YEIVKDVE 397 (444)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCee--EEECCCCC
Confidence 9999999999999999899999999999999888999999999999995599989999999999999999 8999 699
Q ss_pred CCC
Q 015897 395 LSR 397 (398)
Q Consensus 395 L~~ 397 (398)
|++
T Consensus 398 L~~ 400 (444)
T PLN00112 398 IDD 400 (444)
T ss_pred CCH
Confidence 985
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-81 Score=626.43 Aligned_cols=339 Identities=76% Similarity=1.213 Sum_probs=315.9
Q ss_pred ccccccccccCCCCCCCCCcceeeEEeeccchhHhh--hhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEe
Q 015897 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEET--KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (398)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L 132 (398)
..|+|+.|.|++++.. ++||||||++||+++|.++ +.|+++.||+||||+|+||+++++.|+.+++++++++|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3578888777777764 8999999999999999874 678889999999977999999999999999999888899999
Q ss_pred cccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhc
Q 015897 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (398)
Q Consensus 133 ~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a 212 (398)
+|+|+++++++|+++||+|+.++++.++++++++|++++|||+||+++|.||+||++|.|++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999877666777888999999999999999999999999999999999999999999999986
Q ss_pred CCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEE
Q 015897 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (398)
Q Consensus 213 ~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I 292 (398)
+|++++|++|||+|+||++++++++.+|+|+||+||.||++|++++||+++++++++|+++|||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999966666999999999999999999999999999997669999999999999999999
Q ss_pred cCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCcc-CCCCCc
Q 015897 293 NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAED 371 (398)
Q Consensus 293 ~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~-ygip~d 371 (398)
+|+|+.+++++.+|+.++|.++++++|++|++.||+++|+++|.+++++|++|+.|+|+++|+|+|++++| + ||+|+|
T Consensus 241 ~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~G-e~YGi~~g 319 (387)
T TIGR01757 241 GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDG-NPYGIAEG 319 (387)
T ss_pred CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC-cccCCCCC
Confidence 99999998877677788999999999999999999999988999999999999988899999999999999 6 999899
Q ss_pred eEEEEeEEEcCCCceeeEee-ccCCCC
Q 015897 372 IVFSMPCRSKKVTSVCREMV-IMNLSR 397 (398)
Q Consensus 372 v~~svP~~ig~~Gv~~~~i~-~l~L~~ 397 (398)
++||+||++|++|+ ++++ +|+|++
T Consensus 320 v~~S~Pvvig~~Gv--~~Iv~~l~L~~ 344 (387)
T TIGR01757 320 LVFSMPCRSKGDGD--YELATDVSMDD 344 (387)
T ss_pred EEEEEEEEEeCCEE--EEECCCCCCCH
Confidence 99999999999999 8885 999975
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-68 Score=522.82 Aligned_cols=298 Identities=53% Similarity=0.849 Sum_probs=270.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
|++++||+||||+|+||+++++.|+.+++++.++++.|+|+|+..++++++|+++||+|+.+++..++++++++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 56789999999779999999999999999985556778887765566789999999999986665567788899999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||+++|.||+||++|+|++..|++|+++++++|+++++|++++|++|||+|++|+++++++|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999998668999999999999999999999989998 78899 9999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcH
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~ 331 (398)
++||+++||+++++++++|++++||||||++|||+||+++|+|+|+.+++.+++|..+++.+++++++++|++.||+++|
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 239 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSA 239 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 99999999999999999999855699999999999999999999999988776677789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTP--EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~--~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
+..+..+++.+++|+ ++ +++++|+|++++| +||+|+|++||+||++| +|+ +++++ ++|++
T Consensus 240 ~~a~~~~~~iv~ail--~~~~~~~i~~~sv~~~g-~ygi~~~v~~s~P~~ig-~Gv--~~iv~~l~L~~ 302 (326)
T PRK05442 240 ASAANAAIDHVRDWV--LGTPEGDWVSMGVPSDG-SYGIPEGLIFGFPVTCE-NGE--YEIVQGLEIDD 302 (326)
T ss_pred HHHHHHHHHHHHHHH--hCCCCCeEEEEEEEecC-ccCCcCCeEEEEEEEEc-CcE--EEEeCCCCCCH
Confidence 755544678888878 56 8999999999999 89999999999999999 999 77755 88875
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-68 Score=515.19 Aligned_cols=284 Identities=29% Similarity=0.442 Sum_probs=259.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-CcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (398)
+||+|||| |+||+++++.|+..++..+ +.| + |+++++++|.++||.|+.+....++.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~e---l~L--i--Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSE---LVL--I--DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccce---EEE--E--EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999997 9999999999977766433 444 4 66789999999999999865556677766 67999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~R 254 (398)
||+++|.||||||+|+||+..|++|++++++++.++ +||++++++|||+|+|||++|+++ ++|+ |+||++|.||++|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD~~ty~~~k~s-g~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVDILTYIAMKFS-GFPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHHHHHHHHHHhc-CCCccceecccchHHHHH
Confidence 999999999999999999999999999999999999 699999999999999999999999 5676 7899999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcc-cccccHHHHHHHHHhhhHHHHHhcCCCcHHH
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~-~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s 333 (398)
|+++||+++|+++++|+. ||+||||++|||+||+++|+|+|+.++++ .+.|..+++.++++++|++|++.||++++.+
T Consensus 151 ~~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~ 229 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYG 229 (313)
T ss_pred HHHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhh
Confidence 999999999999999997 99999999999999999999999999988 5667788999999999999999998744556
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.+++++.++|+ .|+++|+|+|+|++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 230 ~A~a~a~~~~ail--~d~~~vl~~s~~l~G-~yg~-~dv~~gvP~~lg~~Gv--~~iie~~l~~ 287 (313)
T COG0039 230 PAAALARMVEAIL--RDEKRVLPVSVYLDG-EYGV-EDVYFGVPAVLGKNGV--EEILELLLSD 287 (313)
T ss_pred HHHHHHHHHHHHH--cCCCceEEEEEeecC-ccCc-CCeEEEeeEEEcCCCc--EEEecCCCCH
Confidence 8999999999999 789999999999999 7995 8999999999999999 9999999985
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=520.45 Aligned_cols=298 Identities=57% Similarity=0.874 Sum_probs=271.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
|++.||+||||+|+||+++++.|+.+++++.++.+.|+|+|+..+.++++|+++||+|+.+++..++.++.++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46889999997799999999999999998855556777776544557799999999999866655667778999999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCC-CeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p-~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
|+||+|+|.||+|||+|+|++..|++|+++++++|+++ +| ++++|++|||+|+||+++++.++++|+ |+||+ |.||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~-~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKV-AKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 99999999999999999999999999999999999999 57 999999999999999999999878998 78887 9999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcH
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~ 331 (398)
++||+++||+++|+++++|++.+||||||++|||+||+++|+|+|+.+++.++.|+.+++.+++++++++|++.||+++|
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 238 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSA 238 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcch
Confidence 99999999999999999998767999999999999999999999999988775566789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCC--CcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTPE--GDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~~--~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
++.|.++++.+++|+ +|+ ++++|+|+|++|++||+|+|+|||+||++|++|+ +++++ ++|++
T Consensus 239 ~~~a~a~~~iv~ail--~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv--~~iv~~l~L~~ 303 (323)
T TIGR01759 239 ASAANAAIDHVRDWV--TGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGE--WEIVEGLPLDD 303 (323)
T ss_pred HHHHHHHHHHHHHHH--cCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCee--EEEcCCCCCCH
Confidence 778888899999888 666 9999999999995699999999999999999999 88999 99985
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=529.84 Aligned_cols=304 Identities=31% Similarity=0.444 Sum_probs=277.7
Q ss_pred chhHhh-hhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe
Q 015897 85 KAEEET-KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG 163 (398)
Q Consensus 85 ~~~~~~-~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~ 163 (398)
++|+++ +.++++.+|+|+||+|++|++|++.|+++.+||.||+|.|+|+|++.++++++|++|||+|++++++..+.++
T Consensus 111 ~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~ 190 (452)
T cd05295 111 EKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT 190 (452)
T ss_pred HHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE
Confidence 444443 5577789999999999999999999999999999999999998776689999999999999998887778888
Q ss_pred cCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCC--CeEEEEECCCchhHHHHHHHHCCCCCC
Q 015897 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGNPCNTNALICLKNAPSIPA 241 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtNP~d~~t~~~~k~~~~~~~ 241 (398)
+++|++|+|||+||+++|.||+|||+|.|++..|++|+++++++|+++| | ++++|++|||||++|+++++++|++|+
T Consensus 191 ~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a-~~~~~VlVv~tNPvD~~t~i~~k~apgiP~ 269 (452)
T cd05295 191 TDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNA-KEDVKVIVAGRTFLNLKTSILIKYAPSIPR 269 (452)
T ss_pred ECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999999999999999999999999999999995 7 899999999999999999999999998
Q ss_pred -ceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcC------------ccchhhcccccccH
Q 015897 242 -KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKDHKWLE 308 (398)
Q Consensus 242 -kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G------------~p~~~~i~~~~~~~ 308 (398)
|+||++| ||++|++++||+++|+++++|++++||||||++|||+||+++|+| +|+.+++.+++|..
T Consensus 270 ~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~ 348 (452)
T cd05295 270 KNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWIN 348 (452)
T ss_pred HHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhH
Confidence 6788888 779999999999999999999888999999999999999999988 99999887777888
Q ss_pred HHHHHHHHhhhHHHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceee
Q 015897 309 EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCR 388 (398)
Q Consensus 309 ~el~~~v~~~~~~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~ 388 (398)
+++.+.+++++. +++|.| ++++|.++++++++|+.++++++|+|+||+++| +||+|+|++||+||+++++|+ +
T Consensus 349 ~~~~~~v~~rg~---~rkgsT-~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG-~YGip~gv~~S~Pviig~~Gv--e 421 (452)
T cd05295 349 GEFVATLKSLSS---SLNHEA-AISPAHAIATTLSYWYHGSPPGEIFSLGVISEG-WYGIPEGIVFSMPVKFQNGSW--E 421 (452)
T ss_pred HHHHHHHHHHHH---hccCCh-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEeecc-ccCCcCCEEEEEEEEEeCCeE--E
Confidence 899999999998 455554 456999999999999955445899999999999 899999999999999999999 8
Q ss_pred EeeccCCCC
Q 015897 389 EMVIMNLSR 397 (398)
Q Consensus 389 ~i~~l~L~~ 397 (398)
.+.+|+|++
T Consensus 422 ~V~~L~L~e 430 (452)
T cd05295 422 VVTDLELSE 430 (452)
T ss_pred EEeCCCCCH
Confidence 899999985
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=475.99 Aligned_cols=301 Identities=50% Similarity=0.726 Sum_probs=288.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
|+++++|.|.||+|+||+++++.|+.+.+|++||||.|+|+|+....+.|+|+.|+|+|+++|++..+..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchhH
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs 252 (398)
.|+.|+.|+.||++||+|.|++..|.+|++.+++++++||+|+++||+++||+|+++.++.+++|.+|.++|.+.|+||.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcC----ccchhhcccccccHHHHHHHHHhhhHHHHHhcCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G----~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (398)
+|+.++||.++||+.++|++++|||||+.+|+|++-+++|++ +|+.+.++|+.|+..+|.+.|++||..+|+.|+.
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~ 240 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKL 240 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhh
Confidence 999999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEee-ccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMV-IMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~-~l~L~~ 397 (398)
++++|+|.+++|+|++|+.|+++++|++++||++| .||+|+|..||+||++.+ |-| +++ .||+++
T Consensus 241 SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDG-sYgip~gli~SfPv~~k~-g~w--kiVqgl~idd 306 (332)
T KOG1496|consen 241 SSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDG-SYGIPDGLIFSFPVTIKN-GDW--KIVQGLPIDD 306 (332)
T ss_pred hhhhhHHHhHhhhhhheecCCCCccEEEEeeecCC-CCCCCCCeEEEcceEecC-Cce--EEEcCcchhH
Confidence 99999999999999999999999999999999999 599999999999999996 653 344 377654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=500.14 Aligned_cols=281 Identities=22% Similarity=0.306 Sum_probs=255.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEecCcccccCCCcE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dADi 175 (398)
||+|||| |+||+++|+.|+.++++++ ++| +|+++++++|+++||+|+. ++. .+++++.++|++++|||+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---lvL----~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---IVL----IDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCE
Confidence 7999996 9999999999999999874 554 4778899999999999977 443 256777789999999999
Q ss_pred EEEeCCCCCCCCCc--hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 176 ALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 176 Viitag~~rk~g~~--r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
||+|+|.||+|||+ |+|++..|++|++++++.|.++ +|++++|++|||+|+||+++++.+ ++|+ |+||+||.||+
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv~t~~~~k~s-g~p~~rviG~gt~LDs 149 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDIAVYIAATEF-DYPANKVIGTGTMLDT 149 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHHHHHHHHHHh-CcChhheecccchHHH
Confidence 99999999999999 6999999999999999999999 599999999999999999999998 6887 89999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc---ccccHHHHHHHHHhhhHHHHHhcCCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD---HKWLEEGFTETIQKRGGLLIKKWGRS 329 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~---~~~~~~el~~~v~~~~~~ii~~~G~t 329 (398)
+|++++||+++|+++++|++ |||||||++|||+||+++|+|+|+.++++. +.|..+++.++++++|++|++.||.|
T Consensus 150 ~R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t 228 (307)
T cd05290 150 ARLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWT 228 (307)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCee
Confidence 99999999999999999997 899999999999999999999999988752 23446789999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|+ .|.++++.+++|+ .|+++++|+|++++| +|| ++|+|||+||++|++|+ +++.+|+|++
T Consensus 229 ~~~-ia~a~~~ii~ail--~d~~~v~~vsv~~~G-~yg-~~~v~~svP~~ig~~Gv--~~i~~l~L~~ 289 (307)
T cd05290 229 NAG-IAKSASRLIKAIL--LDERSILPVCTLLSG-EYG-LSDVALSLPTVIGAKGI--ERVLEIPLDE 289 (307)
T ss_pred hHH-HHHHHHHHHHHHH--hCCCeEEEEEEeeCC-ccC-CCCEEEEEEEEEeCCCc--eEecCCCCCH
Confidence 886 5667777777777 789999999999999 799 58999999999999999 8999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=505.02 Aligned_cols=294 Identities=51% Similarity=0.758 Sum_probs=267.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||+||||+|+||+++++.|+.++++++++.+.|+|+|++.++++++|+++||.|+.+++...++++.++|++++|||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 89999988999999999999999999766677888755433388999999999998666656677788999999999999
Q ss_pred EeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHHH
Q 015897 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (398)
Q Consensus 178 itag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~ 256 (398)
+++|.||+||++|.|++..|++|++++++.|+++|+|++++|++|||+|+||++++++++.+|+ |+||+ |.||++|||
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~r 160 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRAK 160 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHHH
Confidence 9999999999999999999999999999999999559999999999999999999999954687 67766 999999999
Q ss_pred HHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhc---ccccccHHHHHHHHHhhhHHHHHhcCCCcHHH
Q 015897 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII---KDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (398)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i---~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s 333 (398)
++||++++++|++|++++||||||++|+|+||+++|+|+|+.++. .+++|..+++.+++++++++|++.||+++|++
T Consensus 161 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~~ 240 (323)
T cd00704 161 AQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAAS 240 (323)
T ss_pred HHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhHH
Confidence 999999999999998778999999999999999999999998774 33356678999999999999999999999977
Q ss_pred HHHHHHHHHHHhhcCCCCC--cEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPEG--DWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~--~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++.+++|+ +|++ +++|||++++| +| |+|+|+|||+||++|++|| +++.+|+|++
T Consensus 241 ~a~a~~~iv~ail--~~~~~~~v~~~s~~~~g-~y~gi~~~v~~s~P~~ig~~Gv--~~v~~l~L~~ 302 (323)
T cd00704 241 AAKAIADHVKDWL--FGTPPGEIVSMGVYSPG-NPYGIPPGIVFSFPCTCKGGGW--HVVEDLKLND 302 (323)
T ss_pred HHHHHHHHHHHHH--hCCCCCcEEEEEEEeCC-ccCCCCCceEEEEEEEEcCCEE--EEecCCCCCH
Confidence 8999999999999 6777 99999999999 79 9999999999999999999 9999999985
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=500.10 Aligned_cols=297 Identities=58% Similarity=0.909 Sum_probs=271.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 46799999977999999999999999998656677888876556677999999999998666656778889999999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+|+|.||+||++|.|++..|++|++++++.|++++.|++++|++|||+|+||+++++.++++|+ ++||+ |.||+.
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999425999999999999999999999966998 78899 999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHH
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s 333 (398)
||++.+|+++|+++++|++.+||||||++++|+||+++++|+|+.+++.+.+|..+++.+++++++++|++.||+++|+.
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~ 239 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAAS 239 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHHH
Confidence 99999999999999999986779999999999999999999999988776667688999999999999999999999975
Q ss_pred HHHHHHHHHHHhhcCCCC--CcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPE--GDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~--~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.+.++++.+++|+ +|+ ++++|+|++++| +||+|+|++||+||++|++|+ +++.+++|++
T Consensus 240 ~a~a~~~iv~ail--~~~~~~~i~~~sv~~~g-~yg~~~~v~~s~P~~ig~~Gv--~~i~~l~L~~ 300 (322)
T cd01338 240 AANAAIDHMRDWV--LGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGGY--EIVEGLEIDD 300 (322)
T ss_pred HHHHHHHHHHHHh--cCCCCCeEEEEEEEccC-ccCCCCCeEEEEEEEEeCCEE--EEEeCCCCCH
Confidence 5568888899888 566 699999999999 899999999999999999999 9999999985
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=490.50 Aligned_cols=279 Identities=23% Similarity=0.334 Sum_probs=255.8
Q ss_pred EEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeC
Q 015897 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (398)
Q Consensus 101 IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViita 180 (398)
|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+.+....+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~L----~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IVL----IDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 6895 9999999999999999874 554 4778899999999999998545456778788999999999999999
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHHHHHH
Q 015897 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (398)
Q Consensus 181 g~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~~~l 259 (398)
|.||+|||+|+|++.+|++|++++++.|+++ +|+|++|++|||+|++|+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999999999999999998 7987 789999999999999999
Q ss_pred HHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc----ccccHHHHHHHHHhhhHHHHHhcCCCcHHHHH
Q 015897 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (398)
Q Consensus 260 A~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~----~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~A 335 (398)
|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+ .++..+++.++++++|++|++.||+++|+ +|
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a 228 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IG 228 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HH
Confidence 9999999999997 899999999999999999999999988754 13346789999999999999999999886 56
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 336 ~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.++++.+++|+ +|+++++|||++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 229 ~a~~~~i~ail--~d~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv--~~i~~l~L~~ 284 (299)
T TIGR01771 229 MAVARIVEAIL--HDENRVLPVSAYLDG-EYGI-KDVYIGVPAVLGRNGV--EEIIELPLSD 284 (299)
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCEEEEEEEEEeCCee--EEEccCCCCH
Confidence 68888888888 789999999999999 7998 6899999999999999 9999999985
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-64 Score=494.45 Aligned_cols=297 Identities=47% Similarity=0.720 Sum_probs=265.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..++++|++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999999986333566777766556667999999999998666555544457799999999999
Q ss_pred EeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchhHHHHHH
Q 015897 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (398)
Q Consensus 178 itag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~ 257 (398)
+++|.||++|++|.+++..|++|+++++++|+++++|++++|++|||+|+||++++++++++|+++||+||.||++|+|+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999985599999999999999999999999877779999999999999999
Q ss_pred HHHHHcCcCcCceeeEEEEeccCCCccccccceEEc-C---ccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHH
Q 015897 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (398)
Q Consensus 258 ~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~-G---~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s 333 (398)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++++++|+.+++.+++++++++|++.+|++...+
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ 240 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHH
Confidence 999999999999987799999999999999999999 9 999998876556678999999999999999776444456
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEeCCcc-CCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~-ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|..+++.+++|+.+.|+++++|||++++| + ||+|+|++||+||++|++|+ +.+.+++|++
T Consensus 241 ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g-~~yg~~~~v~~s~P~~ig~g~~--~~i~el~L~~ 302 (324)
T TIGR01758 241 AAKAAVDQMHDWVLGTPEGTFVSMGVYSDG-SPYGVPKGLIFSFPVTCKNGEW--KIVEGLCVDD 302 (324)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEeecCC-cccCCCCceEEEEEEEEcCCeE--EEecCCCCCH
Confidence 888888999988877789999999999999 8 99999999999999997666 6677799985
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=494.83 Aligned_cols=305 Identities=20% Similarity=0.288 Sum_probs=264.2
Q ss_pred cceeeEEeec-cchhHhhhhccCC-CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 74 CYGVFCLTYD-LKAEEETKSWKKM-VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 74 ~~~~~~~~~~-~~~~~~~~~~~~~-~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
-|++||+... ..... .+|..+. +||+|||| |+||+++++.|+.++++++ +.| +|+++++++|+++||+|
T Consensus 14 ~~~~~~~~~~~~~~~~-~~m~~~~~~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L----iDi~~~~~~g~a~DL~~ 84 (350)
T PLN02602 14 GLDLSQAFFKPIHNSS-PPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADE---LAL----VDVNPDKLRGEMLDLQH 84 (350)
T ss_pred hhhhhhhhhhcccccc-cccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE----EeCCCchhhHHHHHHHh
Confidence 4557777654 22222 2232122 79999995 9999999999999999774 554 47788999999999999
Q ss_pred hcCCCcceEEEec-CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 152 SLFPLLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 152 ~~~~~~~~v~i~~-~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
+. ++...+.++. ++|++++|||+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++|+|++|||+|++|+
T Consensus 85 ~~-~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv~t~ 162 (350)
T PLN02602 85 AA-AFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDVLTY 162 (350)
T ss_pred hh-hcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHH
Confidence 98 5554455553 68999999999999999999999999999999999999999999998 699999999999999999
Q ss_pred HHHHHCCCCCC-ceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccc--cc-
Q 015897 231 ICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KW- 306 (398)
Q Consensus 231 ~~~k~~~~~~~-kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~--~~- 306 (398)
++++++ ++|+ |+||+||.||++|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+. .+
T Consensus 163 ~~~k~s-g~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~ 240 (350)
T PLN02602 163 VAWKLS-GFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYE 240 (350)
T ss_pred HHHHHh-CCCHHHEEeecchHHHHHHHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCccC
Confidence 999999 5998 7889999999999999999999999999997 8999999999999999999999999876542 11
Q ss_pred --cHHHHHHHHHhhhHHHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCC-CceEEEEeEEEcCC
Q 015897 307 --LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA-EDIVFSMPCRSKKV 383 (398)
Q Consensus 307 --~~~el~~~v~~~~~~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip-~dv~~svP~~ig~~ 383 (398)
..+++.+++++++++|++.||.|+|+ +|.++++++.+++ +|+++++|+|++++| +||+| +++|||+||++|++
T Consensus 241 ~~~~~~i~~~v~~~g~eIi~~KG~t~~g-ia~a~a~ii~ail--~d~~~v~~vsv~~~g-~Yg~~~~~v~~s~P~~ig~~ 316 (350)
T PLN02602 241 KETLEEIHRAVVDSAYEVIKLKGYTSWA-IGYSVASLVRSLL--RDQRRIHPVSVLAKG-FHGIDEGDVFLSLPAQLGRN 316 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHH--hcCCCeEEEEEeccc-ccCCCCCCcEEEEEEEEeCC
Confidence 14679999999999999999998875 6667777777777 799999999999999 89994 89999999999999
Q ss_pred CceeeEeeccCCCC
Q 015897 384 TSVCREMVIMNLSR 397 (398)
Q Consensus 384 Gv~~~~i~~l~L~~ 397 (398)
|+ +++++++|++
T Consensus 317 Gi--~~i~~l~L~~ 328 (350)
T PLN02602 317 GV--LGVVNVHLTD 328 (350)
T ss_pred ee--EEEecCCCCH
Confidence 99 9999999985
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=484.75 Aligned_cols=284 Identities=21% Similarity=0.307 Sum_probs=255.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (398)
.+||+|||| |+||+++++.|+.+++.++ +.| + |+++++++|+++||+|+. ++.....+. +++|++++|||
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e---l~L--i--D~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~ad 73 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADE---LVL--V--DVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANSK 73 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCCC
Confidence 469999995 9999999999999998764 544 4 677789999999999998 544322333 47899999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+++|.+|+|||+|+|++.+|++|++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 74 ivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~~ 151 (312)
T cd05293 74 VVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDSA 151 (312)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHHH
Confidence 9999999999999999999999999999999999999 699999999999999999999998 7887 789999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc-----ccccHHHHHHHHHhhhHHHHHhcCC
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-----HKWLEEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~-----~~~~~~el~~~v~~~~~~ii~~~G~ 328 (398)
|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.. ++...+++.++++++|++|++.||.
T Consensus 152 R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~ 230 (312)
T cd05293 152 RFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGY 230 (312)
T ss_pred HHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997 899999999999999999999999988632 1112468999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|+ +|.++++.+++|+ +|++.+++++++++| +||+|+|++||+||++|++|+ +++.+++|++
T Consensus 231 t~~~-~a~a~~~ii~ail--~d~~~~~~vsv~~~g-~yg~~~d~~~svP~~ig~~Gi--~~i~~l~L~~ 293 (312)
T cd05293 231 TSWA-IGLSVADLVDAIL--RNTGRVHSVSTLVKG-LHGIEDEVFLSLPCILGENGI--THVIKQPLTE 293 (312)
T ss_pred chHH-HHHHHHHHHHHHH--cCCCeEEEEEEEeCC-ccCCCCCeEEEEeEEEeCCce--EEEecCCCCH
Confidence 9886 6678888888888 789999999999999 799999999999999999999 8899999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=485.26 Aligned_cols=285 Identities=22% Similarity=0.365 Sum_probs=257.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
|+.+||+|||| |+||+++++.|+..+++++ |.| + |+++++++|+++||+|+. ++..++.+++++|++++||
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e---l~L--~--D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADE---LVI--I--DINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCCC
Confidence 44679999996 9999999999999998764 544 4 778899999999999998 5555677778899999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.||+|||+|.|++..|++|++++++.+.++ +|++|+|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LDs 152 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLDS 152 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHHH
Confidence 99999999999999999999999999999999999999 699999999999999999999998 6987 78899999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc----HHHHHHHHHhhhHHHHHhcCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~----~~el~~~v~~~~~~ii~~~G~ 328 (398)
+|+++++|+++|+++++|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.+++++++++|++.||+
T Consensus 153 ~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~ 231 (315)
T PRK00066 153 ARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGA 231 (315)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999997 8999999999999999999999999987654443 347999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|+ .|.++++.+++++ ++++.++|+|++.+| +|| ++|+|||+||++|++|+ +++.+++|++
T Consensus 232 t~~~-~a~~~~~i~~ail--~~~~~v~~~sv~~~g-~yg-~~~v~~S~Pv~ig~~Gv--~~i~~l~L~~ 293 (315)
T PRK00066 232 TYYG-IAMALARITKAIL--NNENAVLPVSAYLEG-QYG-EEDVYIGVPAVVNRNGI--REIVELPLND 293 (315)
T ss_pred ehHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccC-CCCEEEEeEEEEeCCcE--EEEcCCCCCH
Confidence 9885 5656666666667 789999999999999 899 58999999999999999 9999999985
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=483.77 Aligned_cols=299 Identities=50% Similarity=0.775 Sum_probs=265.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
++.||+|+||+|+||+++++.|+.+++++.++...|+|+|++.+.++++++++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 36799999988999999999999999986222334556665545567899999999987666566666666689999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchhHHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~R 254 (398)
+||+++|.++++|++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999996589999999999999999999998789887799999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEc----CccchhhcccccccHHHHHHHHHhhhHHHHHh-cCCC
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK-WGRS 329 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~----G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~-~G~t 329 (398)
++++||+++++++++|++.+||||||++|||+||+++|+ |+|+.++++++.|..+++.+++++++++|++. +|.+
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t 240 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS 240 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccch
Confidence 999999999999999987679999999999999999999 99999988776677889999999999999996 4455
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.| ++|.++++.+++|+.+.++++++|+|++++| +||+|+|++||+||++|++|+ +++.+++|++
T Consensus 241 ~~-~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g-~yg~~~~v~~s~P~~ig~~Gv--~~i~~~~L~~ 304 (325)
T cd01336 241 AM-SAAKAICDHVHDWWFGTPEGEFVSMGVYSDG-SYGVPEGLIFSFPVTCKNGKW--KIVQGLSIDD 304 (325)
T ss_pred HH-HHHHHHHHHHHHHHcCCCCCeEEEEEEecCC-CcCCCCceEEEEEEEEeCCEE--EEecCCCCCH
Confidence 55 5888888888888843236999999999999 899999999999999999999 9999999985
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=478.77 Aligned_cols=281 Identities=36% Similarity=0.562 Sum_probs=248.1
Q ss_pred HHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhh
Q 015897 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (398)
Q Consensus 113 a~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~d 192 (398)
.+.|+++++|+ |+++.|||+|+..++++++|+++||.|+.++......++.+.+++++|||+||+|+|.||+||++|.|
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 46788899999 89999999977767799999999999998544333334444447999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceee
Q 015897 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272 (398)
Q Consensus 193 ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~ 272 (398)
++..|++|++++++.|++++.|++++|++|||+|+||++++++.+++|+++||+||.||++||+++||+++++++++|++
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~ 160 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYH 160 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEecccHHHHHHHHHHHHHhCcChhheee
Confidence 99999999999999999995466999999999999999995334489988999999999999999999999999999987
Q ss_pred EEEEeccCCCccccccceEE--cCccchhh--cccccccHHHHHHHHHhhhHHHHHhcCCCcHHHHHHHHHHHHHHhhcC
Q 015897 273 MTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTP 348 (398)
Q Consensus 273 v~V~G~Hg~s~vp~~S~a~I--~G~p~~~~--i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~A~~I~~aI~~~~~~ 348 (398)
.+||||||++|||+||+++| +|+|+..+ +.+ +|..+++.++++++|++|++.||+|+|+.+|.++++.+++|+.+
T Consensus 161 ~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~~~-~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~ 239 (313)
T TIGR01756 161 VVVWGNHAESMVADLTHAEFTKNGKHQKVFDELCR-DYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFG 239 (313)
T ss_pred eEEEECCCCceeecccccEEecCCeehhHhhhcCc-HhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcC
Confidence 67999999999999999999 99986543 432 46678999999999999999999999987778999999999965
Q ss_pred CCCCcEEEEEEEeCC-ccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 349 TPEGDWFSSGVYTNG-NPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 349 ~~~~~i~~~sv~~~G-~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
+++++++|+|++++| .+||+|+|++||+||++|++|+ +++++ |+|++
T Consensus 240 ~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv--~~ive~l~L~~ 288 (313)
T TIGR01756 240 TRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGK--VHVVENFELNP 288 (313)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCce--EEEcCCCCCCH
Confidence 588899999999852 2799988999999999999999 89999 99975
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-62 Score=477.01 Aligned_cols=277 Identities=40% Similarity=0.642 Sum_probs=248.5
Q ss_pred HHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHH
Q 015897 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (398)
Q Consensus 116 L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~ 195 (398)
|+++++|+.++++.|+|+|++.++++++|+++||.|+.+++...+++++++|++++|||+||+|+|.||+||++|.|++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788999888999999876655699999999999998655555655566699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHHHHHHHHHcCcCcCceeeEE
Q 015897 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274 (398)
Q Consensus 196 ~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~ 274 (398)
.|++|++++++.|+++++|+|++|++|||+|+||+++++.++ +|+ |+||+||.||++||+++||+++|+++++|+.+|
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~ 160 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVI 160 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeE
Confidence 999999999999999647999999999999999999999995 555 899999999999999999999999999996569
Q ss_pred EEeccCCCccccccceEE----cCccchhhcccccccHHHHHHHHHhhhHHHHHh-cCCCcHHHHHHHHHHHHHHhhcCC
Q 015897 275 IWGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK-WGRSSAASTAVSIVDAMKSLVTPT 349 (398)
Q Consensus 275 V~G~Hg~s~vp~~S~a~I----~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~-~G~t~~~s~A~~I~~aI~~~~~~~ 349 (398)
||||||++|||+||+++| +|+|+.+++.+++|+.+++.+++++++++|++. +|+|.| ++|.++++.+++|+.++
T Consensus 161 VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~-~ia~a~~~iv~ai~~~~ 239 (309)
T PLN00135 161 IWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSAL-SAASSACDHIRDWVLGT 239 (309)
T ss_pred EEEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHHHhCC
Confidence 999999999999999999 999999987665577889999999999999996 666655 48888888888888433
Q ss_pred CCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 350 PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 350 ~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|+++++|+|++++| +||+|+|++||+||+++++|+ +.+.+|+|++
T Consensus 240 ~~~~v~~vsv~~~g-~YGi~~~v~~s~P~vlg~~gv--e~v~~l~L~~ 284 (309)
T PLN00135 240 PEGTWVSMGVYSDG-SYGVPPGLIYSFPVTCEKGEW--SIVQGLSIDE 284 (309)
T ss_pred cCCeEEEEEEEecC-ccCCcCCeEEEEEEEEECCEE--EEecCCCCCH
Confidence 78999999999999 899989999999999999999 8888999975
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-61 Score=471.45 Aligned_cols=283 Identities=23% Similarity=0.367 Sum_probs=255.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|||+ |.+|+++++.|+..++..+ |.| +|++++++++.++||+|+.+.....+.+..++++++++||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~e---i~l----~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADE---LVL----IDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 38999995 9999999999999988653 554 477889999999999998743334455666889999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl 255 (398)
|+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999998 699999999999999999999996 8987 78999999999999
Q ss_pred HHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc---HHHHHHHHHhhhHHHHHhcCCCcHH
Q 015897 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKKWGRSSAA 332 (398)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~---~~el~~~v~~~~~~ii~~~G~t~~~ 332 (398)
+++||+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..|. .+++.++++++|++|++.||+++|+
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~ 229 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG 229 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 99999999999999997 9999999999999999999999999887654453 5688999999999999999999876
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 333 s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++.+++|+ +|++.++|+|++++| +||. +|+|||+||++|++|+ +++++++|++
T Consensus 230 -~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~ig~~Gv--~~i~~~~l~~ 287 (306)
T cd05291 230 -IATALARIVKAIL--NDENAILPVSAYLDG-EYGE-KDVYIGVPAIIGRNGV--EEVIELDLTE 287 (306)
T ss_pred -HHHHHHHHHHHHH--cCCCEEEEEEEEecc-ccCC-CCEEEEEEEEEeCCCE--EEEECCCCCH
Confidence 5667778888888 789999999999999 8995 8999999999999999 8999999985
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=464.84 Aligned_cols=280 Identities=25% Similarity=0.350 Sum_probs=255.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCcEEE
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiVi 177 (398)
|+|||| |.||+++++.|+..+++++ +.| +|+++++++|+++||+|+... +...++. +++|++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~l----~D~~~~~~~g~~~DL~~~~~~-~~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LVL----VDVNEEKAKGDALDLSHASAF-LATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHhHHHhccc-cCCCeEEECCCHHHhCCCCEEE
Confidence 689995 9999999999999999774 554 377889999999999999854 3333333 46699999999999
Q ss_pred EeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHHH
Q 015897 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (398)
Q Consensus 178 itag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~ 256 (398)
+++|.|++|||+|.|++.+|+++++++++.|+++ +|+||+|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~sNP~d~~~~~~~~~s-g~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNPVDILTYVAQKLS-GLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccChHHHHHHHHHHHh-CcCHHHEEecCCcHHHHHHH
Confidence 9999999999999999999999999999999999 599999999999999999999998 6887 899999999999999
Q ss_pred HHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHHHHH
Q 015897 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (398)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~A~ 336 (398)
+++|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++++.+|..+++.+++++++++|++.||+++|+ +|.
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~~-~a~ 227 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG-IAT 227 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchHH-HHH
Confidence 9999999999999997 89999999999999999999999999987767778999999999999999999999875 788
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 337 ~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++++.+++|+ +++++++|+|++++| +||. +|++||+||++|++|+ +++++|+|++
T Consensus 228 a~~~~~~ai~--~~~~~v~~~s~~~~g-~yg~-~~~~~s~Pv~ig~~Gi--~~i~~l~L~~ 282 (300)
T cd00300 228 AIADIVKSIL--LDERRVLPVSAVQEG-QYGI-EDVALSVPAVVGREGV--VRILEIPLTE 282 (300)
T ss_pred HHHHHHHHHH--cCCCeEEEEEEEecC-ccCC-CCEEEEEEEEEeCCCe--EEEecCCCCH
Confidence 8888888888 789999999999999 8995 8999999999999999 8899999985
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-60 Score=441.32 Aligned_cols=284 Identities=20% Similarity=0.289 Sum_probs=257.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-CcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dAD 174 (398)
..||.|+|+ |+||.+.++.|+.+++.+| ++| +|.++++++|.+|||+|.. +++..-+++. .||.+.+|+|
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Lade---l~l----vDv~~dklkGE~MDLqH~s-~f~~~~~V~~~~Dy~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADE---LVL----VDVNEDKLKGEMMDLQHGS-AFLSTPNVVASKDYSVSANSK 90 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhc---eEE----EecCcchhhhhhhhhcccc-ccccCCceEecCcccccCCCc
Confidence 579999995 9999999999999999885 665 4889999999999999988 7776555544 4999999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+|+|...++|++|++++++|+.|++.+.+.+-+| +|++++|++|||+|+|||+.||.+ +||+ |+||.||.||++
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-gfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-GFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-CCcccceeccCcCccHH
Confidence 9999999988899999999999999999999999999 899999999999999999999998 8998 899999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc-----ccHHHHHHHHHhhhHHHHHhcCC
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~-----~~~~el~~~v~~~~~~ii~~~G~ 328 (398)
|||+.++++||++|+++++ ||+|||||+.||.||.+.|.|.++.++..+.. ..-+|+.+++...+|+|++.||+
T Consensus 169 RFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGy 247 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGY 247 (332)
T ss_pred HHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999997 99999999999999999999999998765421 11247888999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|+|+ .+.++++...+++ .|.++++|+|+..+| .|||.+|+|+|+||+++++|+ ..+++.+|++
T Consensus 248 Tswa-Iglsva~l~~ail--~n~~~i~~Vst~~kg-~~gI~~dVflSlPc~l~~~Gi--~~vv~~~Lt~ 310 (332)
T KOG1495|consen 248 TSWA-IGLSVADLAQAIL--RNLRRIHPVSTMVKG-LYGIDDDVFLSLPCLLGANGI--THVVKQKLTD 310 (332)
T ss_pred hHHH-HHHHHHHHHHHHH--hCcCceeeeeecccc-ccCCCCceEEecceeecCCch--hhhhcccCCH
Confidence 9996 6667777777767 799999999999999 899988999999999999999 8899999986
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=449.81 Aligned_cols=284 Identities=24% Similarity=0.357 Sum_probs=250.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (398)
+.+||+|||| |+||+++++.++..++ . ++. |+ |+++++++|.++|+.|+.........+. ++++++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~---~l~--L~--Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G---DVV--LY--DVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C---eEE--EE--ECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4579999996 9999999999999886 3 254 44 6677888999999999863222233443 4688899999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.+|++|++|.|++..|+++++++++.|+++ +|++|+|++|||+|++++++++++ ++|+ |+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 99999999999999999999999999999999999999 699999999999999999999987 7886 89999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc---HHHHHHHHHhhhHHHHHh--cC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKK--WG 327 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~---~~el~~~v~~~~~~ii~~--~G 327 (398)
+|++++||+++|+++++|+. +|+||||++|||+||+++|+|+|+.+++++..|. .+++.+++++++++|++. +|
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg 231 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKG 231 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999997 8999999999999999999999999987654443 467889999999999996 66
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 328 ~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.+.| ++|.++++.+++|+ +|+++++|+|++++| +||+ +|++||+||++|++|+ +++++++|++
T Consensus 232 ~t~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv--~~i~~l~l~~ 294 (319)
T PTZ00117 232 SAFF-APAAAIVAMIEAYL--KDEKRVLVCSVYLNG-QYNC-KNLFVGVPVVIGGKGI--EKVIELELNA 294 (319)
T ss_pred ChHH-HHHHHHHHHHHHHh--cCCCeEEEEEEEecc-ccCC-CCeEEEEEEEEeCCeE--EEEeCCCCCH
Confidence 6654 47888888888888 789999999999999 7999 5999999999999999 9999999985
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=448.16 Aligned_cols=282 Identities=23% Similarity=0.367 Sum_probs=254.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|||+ |.||+++++.|+..++..+ +.| +|++++++++.++||.|+. ++..+..+.++++++++|||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l----~D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVL----VDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEE----EECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 58999995 9999999999999988653 554 3778889999999999986 5544456667899999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl 255 (398)
|++++.|+++|++|++++.+|+++++++++.|+++ +|+|+++++|||+|++++++++++ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 99999999999999999999999999999999999 699999999999999999999998 7988 78999999999999
Q ss_pred HHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccc-----cccHHHHHHHHHhhhHHHHHhcCCCc
Q 015897 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-----KWLEEGFTETIQKRGGLLIKKWGRSS 330 (398)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~-----~~~~~el~~~v~~~~~~ii~~~G~t~ 330 (398)
+++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.+. .+..+++.+++++++++|++.||+++
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~ 228 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY 228 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 99999999999999997 8999999999999999999999999876542 12356899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 331 ~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|+ +|.++++.+++|+ +|+++++|+|++++| +||+ +|++||+||+||++|+ +++++++|++
T Consensus 229 ~~-~a~a~~~i~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv--~~i~~~~L~~ 288 (308)
T cd05292 229 YA-IGLALARIVEAIL--RDENSVLTVSSLLDG-QYGI-KDVALSLPCIVGRSGV--ERVLPPPLSE 288 (308)
T ss_pred HH-HHHHHHHHHHHHH--cCCCcEEEEEEEEcc-cCCC-CCEEEEEEEEEeCCce--EEecCCCCCH
Confidence 75 5667777777777 789999999999999 7998 8999999999999999 9999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=443.57 Aligned_cols=286 Identities=20% Similarity=0.309 Sum_probs=249.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFE 171 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~ 171 (398)
|.+++||+|||| |+||+++++.++..++. .+. |+ |++++++++.++|+.|.........++. +++|++++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~----~i~--Lv--Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLG----DVV--LF--DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEE--EE--eCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC
Confidence 345579999995 99999999999998872 244 44 6777888999999999762222233444 47889999
Q ss_pred CCcEEEEeCCCCCCCCC-----chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 172 dADiViitag~~rk~g~-----~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
|||+||+++|.||+||+ +|.+++..|++++++++++|+++ +|++|+|++|||+|++++++++.+ ++|+ |+||
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHhc-CCChhhEEE
Confidence 99999999999999999 99999999999999999999999 699999999999999999999987 7886 8999
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccc---cHHHHHHHHHhhhHHH
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLL 322 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~---~~~el~~~v~~~~~~i 322 (398)
+||.||++|++++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++++..+ ..+++.++++++|++|
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 230 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEI 230 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 899999999999999999999999988643211 2467899999999999
Q ss_pred HHh--cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 323 IKK--WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 323 i~~--~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++. +|.+.| ++|.++++.+++|+ +|+++++|||++++| +||+ +|+|+|+||+||++|+ +++++++|++
T Consensus 231 ~~~~gkg~t~~-~ia~a~~~i~~ail--~d~~~v~~vs~~~~g-~yg~-~~v~~s~P~~ig~~Gv--~~i~~~~l~~ 300 (321)
T PTZ00082 231 VDLLGTGSAYF-APAAAAIEMAEAYL--KDKKRVLPCSAYLEG-QYGH-KDIYMGTPAVIGANGV--EKIIELDLTP 300 (321)
T ss_pred HhhcCCCccHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCeEEEEEEEEeCCeE--EEEeCCCCCH
Confidence 995 567766 47777777777777 799999999999999 7999 8999999999999999 9999999985
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-57 Score=443.83 Aligned_cols=286 Identities=24% Similarity=0.384 Sum_probs=251.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADi 175 (398)
|||+|+||+|.+|+++++.|+..+++++ |. |+|++.+.+++++.++||+|+........++. +++++++++||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~---v~--lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE---IN--LISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EE--EEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999889999999999999998653 44 45543344899999999999753222223332 346899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~R 254 (398)
||+++|.|+++|++|.+++..|+++++++++.|+++ +|++++|+++||+|++|+++++++ ++|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~~npvd~~t~~~~~~~-g~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVVTNPVDVMTYKALKES-GFDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHHHhc-CCCHHHEeeccchHHHHH
Confidence 999999999999999999999999999999999998 699999999999999999999998 5887 7899999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHHH
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~ 334 (398)
++++||+++++++++|++ +|+||||++|||+||+++|+|+|+.++++..++..+++.++++++|++|++.||+++|+ +
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~-~ 231 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEYG-P 231 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchhh-H
Confidence 999999999999999997 89999999999999999999999998865334556789999999999999999998774 6
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 335 A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|..+++.+++|+ +|++.++|++++++| +| |++ |+++|+||+++++|+ +++++|+|++
T Consensus 232 a~~~~~ii~ail--~~~~~v~~vsv~~~g-~~~~~~-~~~~svP~~ig~~Gv--~~i~~l~l~~ 289 (309)
T cd05294 232 ASAISNLVRTIA--NDERRILTVSTYLEG-EIDGIR-DVCIGVPVKLGKNGI--EEIVPIEMDD 289 (309)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEEEECC-ccCCCC-CeEEEeEEEEcCCcc--EEEeCCCCCH
Confidence 666677777777 799999999999999 56 995 999999999999999 8899999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=439.71 Aligned_cols=280 Identities=24% Similarity=0.393 Sum_probs=245.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADi 175 (398)
+||+|||+ |.||+.+|+.++..++. + +.| + |++++..+|.++|+.|.........+++ +++++++++||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvl--v--Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDi 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVL--L--DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEE--E--eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCE
Confidence 59999995 99999999999998874 2 554 4 6677788889999988652211122332 467888999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~R 254 (398)
||+++|.|+++|++|+|++..|.+++++++++|.++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|
T Consensus 73 VIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~tNP~di~t~~~~~~s-g~~~~rviG~g~~lds~R 150 (305)
T TIGR01763 73 VVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAWQKS-GFPKERVIGQAGVLDSAR 150 (305)
T ss_pred EEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHEEEeccchHHHH
Confidence 999999999999999999999999999999999999 699999999999999999999998 7887 8999999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh--cCCCcHH
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSAA 332 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~--~G~t~~~ 332 (398)
+++.||+++++++++|+. +||||||++|||+||+++|+|+|+.+++.++. .+++.++++++|++|++. +|++.|+
T Consensus 151 ~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg~t~~~ 227 (305)
T TIGR01763 151 FRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQGSAYYA 227 (305)
T ss_pred HHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999999999997 89999999999999999999999998876532 478999999999999996 5677664
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 333 s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++.+.+++ .|++.++|+|++++| +||+ +|+++|+||++|++|+ +++++++|++
T Consensus 228 -~a~~~~~i~~ai~--~~~~~v~~~s~~~~~-~yg~-~~v~~s~P~~ig~~Gv--~~i~~~~l~~ 285 (305)
T TIGR01763 228 -PAASVVEMVEAIL--KDRKRVLPCAAYLDG-QYGI-DGIYVGVPVILGKNGV--EHIYELKLDQ 285 (305)
T ss_pred -HHHHHHHHHHHHh--CCCCeEEEEEEEecc-cCCC-CceEEEEEEEEeCCeE--EEEeCCCCCH
Confidence 5566666666666 789999999999999 8999 8999999999999999 9999999985
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=438.61 Aligned_cols=272 Identities=25% Similarity=0.294 Sum_probs=230.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-c--ccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P--YELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-~--~eal~dA 173 (398)
+||+||||+|+||+++++.|+.+++.++ +. |+ |++ +++|+++||+|+..+ ..++...+ + |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e---lv--Li--Di~--~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE---LA--LY--DIV--NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE---EE--EE--ecC--ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 5999999779999999999999998764 54 45 555 899999999998721 23432213 2 8999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH----HHHHHHHCCCCCC-ceEEecC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~----t~~~~k~~~~~~~-kvig~gt 248 (398)
|+||+|+|.||+||++|+|++..|++|++++++.|+++ +|++|+|++|||+|+| +++++|.+ ++|+ |+||+|+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 6999999999999998 78888887 7887 8899976
Q ss_pred chhHHHHHHHHHHHcCcCcCceeeEEEEecc-CCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc-
Q 015897 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (398)
Q Consensus 249 ~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H-g~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~- 326 (398)
||++|++++||+++|+++++|+. |||||| |++|||+||++++ +.++ .+ + ..+++.++++++|++|++.|
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~~-~v~GeHsGds~vp~~S~~~~----~~~~-~~-~-~~~~i~~~v~~~g~~Ii~~k~ 218 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVNV-PVIGGHSGVTILPLLSQCQP----PFTF-DQ-E-EIEALTHRIQFGGDEVVKAKA 218 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEEE-EEEecCCCCceecccccccc----cccC-CH-H-HHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999995 999999 8999999999975 3333 22 1 25789999999999999974
Q ss_pred --CCCcHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 327 --G~t~~~s~A~~I~~aI~~~~~~-~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
|.++| ++|.++++++++|+.. .+++.+++++ +.+| + |. +|+|||+||++|++|+ +++++| +|++
T Consensus 219 gkg~t~~-~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~-~-g~-~~v~~s~P~~ig~~Gv--~~i~~l~~L~~ 286 (310)
T cd01337 219 GAGSATL-SMAYAGARFANSLLRGLKGEKGVIECA-YVES-D-VT-EAPFFATPVELGKNGV--EKNLGLGKLND 286 (310)
T ss_pred CCCCcch-hHHHHHHHHHHHHHHhcCCCcceEEEE-EEec-c-CC-CceEEEEEEEEeCCeE--EEEeCCCCCCH
Confidence 66655 4788888888888843 3466788887 7787 4 76 8999999999999999 999999 5975
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=438.21 Aligned_cols=271 Identities=24% Similarity=0.246 Sum_probs=228.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-Cc--ccccCCCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~--~eal~dAD 174 (398)
||+||||+|+||+++++.|+.+++.++ ++ |+ |+++ ++|+++||+|.. . ...++.++ ++ |++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e---lv--L~--Di~~--a~g~a~DL~~~~-~-~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE---LS--LY--DIAG--AAGVAADLSHIP-T-AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE---EE--Ee--cCCC--CcEEEchhhcCC-c-CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999988663 54 45 5554 789999999976 2 22344322 33 99999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh----HHHHHHHHCCCCCC-ceEEecCc
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~~~~~~~-kvig~gt~ 249 (398)
+||+++|.||+||++|+|++..|++|++++++.|.++ +|++++|++|||+|+ +|+++++.+ ++|+ |+||+|+
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 9999999999999999999999999999999999999 699999999999998 888888887 7887 7899986
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEeccCC-CccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh---
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--- 325 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~-s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~--- 325 (398)
||++|++++||+++|+++++|+. |||||||+ +|||+||++++ .+. +.++ ..+++.++++++|++|++.
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~---~~~~--~~~~i~~~v~~~g~~Ii~~k~g 218 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL---FTED--QLEALIHRIQNAGTEVVKAKAG 218 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC---CCHH--HHHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999996 99999987 99999999983 332 2222 2578999999999999996
Q ss_pred cCCCcH--HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 326 WGRSSA--ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 326 ~G~t~~--~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
+|++.| +.++..++++|..++ .|++.++|++ +++| +||. +|+|||+||++|++|+ ++++++ +|++
T Consensus 219 kg~t~~~ia~a~~~iv~ail~~~--~d~~~v~~~s-~~~g-~yg~-~~v~~s~P~~ig~~Gv--~~i~~~~~L~~ 286 (312)
T TIGR01772 219 AGSATLSMAFAGARFVLSLVRGL--KGEEGVVECA-YVES-DGVT-EATFFATPLLLGKNGV--EKRLGIGKLSS 286 (312)
T ss_pred CCChhHHHHHHHHHHHHHHHHhh--CCCccEEEEE-EEcc-CCCc-CceEEEEEEEEcCCee--EEEEccCCCCH
Confidence 566655 344445556665554 4788999965 8999 7997 8999999999999999 999999 8875
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=426.24 Aligned_cols=281 Identities=23% Similarity=0.384 Sum_probs=248.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (398)
|+||+|||| |.+|+++++.++..++. + +.| + |++++++++.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~L--~--D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VVL--F--DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EEE--E--ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 579999996 99999999999988763 3 444 4 6678889999999998763333334443 46789999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+++|.|+++|++|.+++.+|++++++++++|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 9999999999999999999999999999999999998 599999999999999999999998 7887 889999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh--cCCCcH
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~--~G~t~~ 331 (398)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++.+ +| .+++.+.+++++++|++. +|++.+
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~kg~t~~ 227 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKTGSAYY 227 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhcccCChhH
Confidence 9999999999999999997 899999999999999999999999988543 34 478999999999999985 776655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+ .|..+++.+.+++ .|++.++++|++++| +||+ +|++||+||+++++|+ +++.+|+|++
T Consensus 228 ~-~A~~~~~ii~ail--~~~~~~~~~~v~~~g-~yg~-~~~~~s~P~~i~~~Gv--~~i~~~~l~~ 286 (307)
T PRK06223 228 A-PAASIAEMVEAIL--KDKKRVLPCSAYLEG-EYGV-KDVYVGVPVKLGKNGV--EKIIELELDD 286 (307)
T ss_pred H-HHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCC-CCeEEEeEEEEeCCeE--EEEeCCCCCH
Confidence 3 6777788888888 689999999999999 7999 9999999999999999 8899999975
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=419.99 Aligned_cols=278 Identities=25% Similarity=0.393 Sum_probs=243.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCcEEE
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiVi 177 (398)
|+|||| |.||+.+++.++..++. + +.| + |++++++++.++|+.|.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~L--~--Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VVL--L--DIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EEE--E--eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999998874 3 544 4 5667888999999998752222223343 35689999999999
Q ss_pred EeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHHH
Q 015897 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (398)
Q Consensus 178 itag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~ 256 (398)
+++|.|+++|++|.+++.+|++++++++++|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~-~p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 9999999999999999999999999999999998 699999999999999999999998 7876 899999999999999
Q ss_pred HHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc--CCCcHHHH
Q 015897 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW--GRSSAAST 334 (398)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~--G~t~~~s~ 334 (398)
++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++.+++ .+++.+++++++++|++.+ |++.|+ .
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t~~~-~ 225 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSAYYA-P 225 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCchhHH-H
Confidence 9999999999999997 89999999999999999999999998876543 5789999999999999966 777664 5
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 335 A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.++++.+++++ .|++.++|+|++++| +||++ |++||+||++|++|+ +++.+|+|++
T Consensus 226 a~~~~~i~~ail--~~~~~i~~~s~~~~g-~yg~~-~~~~s~P~~ig~~G~--~~~~~l~l~~ 282 (300)
T cd01339 226 AAAIAEMVEAIL--KDKKRVLPCSAYLEG-EYGIK-DIFVGVPVVLGKNGV--EKIIELDLTD 282 (300)
T ss_pred HHHHHHHHHHHH--cCCCcEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeE--EEEeCCCCCH
Confidence 666666666666 789999999999999 89995 999999999999999 8999999985
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-53 Score=414.81 Aligned_cols=275 Identities=25% Similarity=0.273 Sum_probs=235.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Cc-ccc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YEL 169 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~-~ea 169 (398)
..+|.||+||||+|+||+++++.|+..++.++ +. |+ |+ ++++++++||+|+.. ...+.-.+ ++ |++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e---lv--L~--Di--~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE---LS--LY--DI--VGAPGVAADLSHIDT--PAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE---EE--EE--ec--CCCcccccchhhcCc--CceEEEecCCCchHHH
Confidence 35688999999879999999999998887653 54 45 44 468899999999773 22333222 23 899
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHH----HHCCCCCC-ceE
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNF 244 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~----k~~~~~~~-kvi 244 (398)
++|||+||+++|.|++||++|.+++..|++++++++++|+++ +|+++|+++|||+|+++++++ +.+ ++|+ ++|
T Consensus 74 l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~vi 151 (321)
T PTZ00325 74 LRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKLF 151 (321)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhee
Confidence 999999999999999999999999999999999999999998 799999999999999999995 665 7887 789
Q ss_pred EecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCC-CccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHH
Q 015897 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLI 323 (398)
Q Consensus 245 g~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~-s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii 323 (398)
|+++ |||+||+++||+++|+++++|++ |||||||+ +|||+||++ |+|+.+ + ..+++.++++++|++|+
T Consensus 152 G~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~~----~--~~~~i~~~v~~~g~~Ii 220 (321)
T PTZ00325 152 GVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLPE----E--QVEQITHRVQVGGDEVV 220 (321)
T ss_pred echh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCCH----H--HHHHHHHHHHHHHHHHH
Confidence 9985 99999999999999999999996 99999999 899999999 788642 1 25789999999999999
Q ss_pred Hhc---CCCcHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 324 KKW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 324 ~~~---G~t~~~s~A~~I~~aI~~~~~~-~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
+.| |+|.| ++|.++++.+++|+.. +|++.+++++ +++| +||+ +|+|+|+||++|++|+ +++++ ++|++
T Consensus 221 ~~k~~kg~t~~-g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g-~yg~-~~v~~s~P~~ig~~Gv--~~i~~~~~L~~ 293 (321)
T PTZ00325 221 KAKEGAGSATL-SMAYAAAEWSTSVLKALRGDKGIVECA-FVES-DMRP-ECPFFSSPVELGKEGV--ERVLPIGPLNA 293 (321)
T ss_pred hcccCCCCchH-HHHHHHHHHHHHHHhhcCCCCCeEEEE-EEec-CCCC-CCeEEEEEEEEcCCee--EEEcCCCCCCH
Confidence 976 56665 4777777777777743 4588999995 9999 7997 8999999999999999 99999 89975
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=404.31 Aligned_cols=273 Identities=25% Similarity=0.279 Sum_probs=230.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE---ecCcccccCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELFED 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i---~~~~~eal~d 172 (398)
..||+||||+|+||+++++.|+.++++++ +. |+ |+++ ++|+++||.|+.... .+.- .++.+++++|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~e---l~--L~--Di~~--~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~~ 86 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSE---LH--LY--DIAN--TPGVAADVSHINTPA--QVRGFLGDDQLGDALKG 86 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCE---EE--EE--ecCC--CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcCC
Confidence 56999999889999999999999999774 54 44 5554 789999999988421 2322 2233899999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch----hHHHHHHHHCCCCCC-ceEEec
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d----~~t~~~~k~~~~~~~-kvig~g 247 (398)
||+||+++|.||+||++|.|++..|++++++++++++++ +|+++||++|||+| ++++++++.+ ++|+ |+||++
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~~~~~~s-~~p~~~viG~~ 164 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAEVLKKAG-VYDPKKLFGVT 164 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHHHHHHcC-CCCcceEEEEe
Confidence 999999999999999999999999999999999999999 69999999999999 8999998887 6877 789998
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCC-CccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh-
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK- 325 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~-s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~- 325 (398)
+ ||++|+++++|+++|+++.+|++ +|+||||+ +|||+||++++ ..+ +.++ ..+++.++++++|++|++.
T Consensus 165 ~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~----~~~-~~~~--~~~~i~~~v~~~g~~Ii~~k 235 (323)
T PLN00106 165 T-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATP----KVS-FTDE--EIEALTKRIQNGGTEVVEAK 235 (323)
T ss_pred c-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhccee----ccc-CCHH--HHHHHHHHHHHHHHHHHhCc
Confidence 5 99999999999999999999996 99999965 99999999974 323 2222 2578999999999999996
Q ss_pred --cCCCcHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 326 --WGRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 326 --~G~t~~~s~A~~I~~aI~~~~~~-~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
+|.+.| ++|.++++++++|+.+ ++++.++||+ +.+| +| .+++|||+||+||++|+ ++++++ +|++
T Consensus 236 ~~kg~t~~-~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~-~~--~~~v~~s~P~~ig~~Gv--~~i~~~~~L~~ 304 (323)
T PLN00106 236 AGAGSATL-SMAYAAARFADACLRGLNGEADVVECS-YVQS-EV--TELPFFASKVRLGRNGV--EEVLGLGPLSE 304 (323)
T ss_pred cCCCCchH-HHHHHHHHHHHHHHhccCCCceEEEEE-EECc-cc--CCceEEEEEEEEcCCee--EEEcCCCCCCH
Confidence 466655 4888888888888843 2477999999 7777 45 23499999999999999 999999 9975
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=402.88 Aligned_cols=272 Identities=25% Similarity=0.305 Sum_probs=229.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE--ecCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (398)
|||+||||+|.||+++++.|.. .+... ++. |+ |+++ ..+++++||.|.. ....+.. ..+.+++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~---el~--L~--d~~~-~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS---ELS--LY--DIAP-VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc---EEE--EE--ecCC-CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999865 34433 244 44 4553 4678899998752 1122322 22338999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHH----HHCCCCCC-ceEEecC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~----k~~~~~~~-kvig~gt 248 (398)
|+||+++|.++++|++|.+++..|+++++++++.|+++ +|+++|+++|||+|+||++++ |++ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 799999999999999999987 776 7887 8999986
Q ss_pred chhHHHHHHHHHHHcCcCcCceeeEEEEeccCC-CccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc-
Q 015897 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (398)
Q Consensus 249 ~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~-s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~- 326 (398)
||++|++++||+++|+++++|+. +||||||+ +|||+||++ +|.|+.+ ++ .+++.++++++|++|++.|
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~~-~v~GeHg~~s~~p~~S~~--~g~~l~~----~~--~~~i~~~v~~~g~~ii~~k~ 218 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFTE----QE--VADLTKRIQNAGTEVVEAKA 218 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheEE-EEEEecCCCceecccccc--CCccCCH----HH--HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999995 99999976 999999999 8888742 22 5789999999999999987
Q ss_pred --CCCcHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 327 --G~t~~~s~A~~I~~aI~~~~~~-~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
|+|.| ++|.++++.+++|+.+ .|+++++|++ +.+| + |. +|+|||+||++|++|+ ++++++ +|++
T Consensus 219 ~~g~t~~-~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~-~-g~-~~v~~s~P~~ig~~Gv--~~i~~~~~L~~ 286 (312)
T PRK05086 219 GGGSATL-SMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GK-YARFFAQPVLLGKNGV--EERLPIGTLSA 286 (312)
T ss_pred CCCCchh-hHHHHHHHHHHHHHhcCCCCCcEEEEE-EEec-c-CC-cceEEEEEEEEcCCee--EEEcCCCCCCH
Confidence 66655 4888888888888865 4688899976 8888 4 76 8999999999999999 999999 9875
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=384.68 Aligned_cols=243 Identities=36% Similarity=0.525 Sum_probs=213.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCCcEEE
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADiVi 177 (398)
|+||||+|.+|+++++.|+..+... ...|+|+ |++++++++.++||+|..... ..+++.+++.|++++|||+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~---~~el~L~--D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLL---AIELVLY--DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCc---ceEEEEE--eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence 6899977999999999999988311 1234455 567789999999999987544 346666666699999999999
Q ss_pred EeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHHH
Q 015897 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (398)
Q Consensus 178 itag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~ 256 (398)
+++|.+|++|++|.+++.+|++++++++++|+++ +|+||+|++|||+|++|++++|++ ++|+ |+||+|| +|++|++
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r~~ 152 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIRFR 152 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHHHH
Confidence 9999999999999999999999999999999999 699999999999999999999998 7876 8999999 9999999
Q ss_pred HHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHHHHH
Q 015897 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (398)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~A~ 336 (398)
+++|+++++++++|+. +|||+||++++|+||+++ ++..+.
T Consensus 153 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~---------------------------------------~a~~~~ 192 (263)
T cd00650 153 RILAEKLGVDPDDVKV-YILGEHGGSQVPDWSTVR---------------------------------------IATSIA 192 (263)
T ss_pred HHHHHHhCCCccceEE-EEEEcCCCceEeccccch---------------------------------------HHHHHH
Confidence 9999999999999995 999999999999999875 233455
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 337 ~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.++++| + +|++.++|++++++| +||+|+|++||+||+++++|+ +++++++|++
T Consensus 193 ~ii~ai---~--~~~~~~~~v~v~~~g-~ygi~~~~~~s~P~~i~~~Gi--~~~~~~~l~~ 245 (263)
T cd00650 193 DLIRSL---L--NDEGEILPVGVRNNG-QIGIPDDVVVSVPCIVGKNGV--EEPIEVGLTD 245 (263)
T ss_pred HHHHHH---H--cCCCEEEEEEEEeCC-ccCCcCCEEEEEEEEEeCCce--EEEecCCCCH
Confidence 555555 5 789999999999999 899989999999999999999 8888888874
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=306.14 Aligned_cols=275 Identities=25% Similarity=0.296 Sum_probs=217.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---Cccccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~eal 170 (398)
.+..||+|.||+|.||+.|...|.++.+.++ |+|||+- ...|++.||.|..++ ..+.-++ +.++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~-----LaLYDi~----~~~GVaaDlSHI~T~--s~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIA----NTPGVAADLSHINTN--SSVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce-----eeeeecc----cCCcccccccccCCC--CceeccCChhHHHHHh
Confidence 4568999999999999999999999988763 5567652 567999999998743 2333333 468999
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHH---HHHCCCCCCceEEec
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~---~k~~~~~~~kvig~g 247 (398)
++||+|||.+|.||||||+|.||+..|+.|+++++..+.++ ||+|.+.++|||+|...+++ +|..+-++++.+.+.
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 99999999999999999999999999999999999999998 79999999999999765543 667778988887788
Q ss_pred CchhHHHHHHHHHHHcCcCc-CceeeEEEEeccC-CCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh
Q 015897 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~-~~V~~v~V~G~Hg-~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~ 325 (398)
|.||..|++.++++.++++| ++++ ++|+|+|. -+.+|++|++. |...+-.+ ..++++.++|..|.|+.+.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~~~~~---~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFRFTDD---EIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----CcccCCHH---HHHHHHHHHHhCCceEEEe
Confidence 99999999999999999999 5577 79999994 69999999997 54433221 2568899999999998874
Q ss_pred c-CCCcH-HHHHHHHHHHHHHhhcC-CCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 326 W-GRSSA-ASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 326 ~-G~t~~-~s~A~~I~~aI~~~~~~-~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
| |..++ .|+|.+-++...+++.+ .++..+.-|+.+-.- .+|+ .||+.|+++|++|+ +++.+|+
T Consensus 246 KaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~-~~~~---~fFaspv~Lg~~Gv--~~v~~l~ 311 (345)
T KOG1494|consen 246 KAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP-VTEL---PFFATPVTLGKKGV--EEVLGLG 311 (345)
T ss_pred ccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc-ccCc---cceeceEEecCCce--eeecCCC
Confidence 4 44443 34444443333333333 456677777644332 4677 49999999999999 8888753
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=283.63 Aligned_cols=274 Identities=16% Similarity=0.153 Sum_probs=203.6
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-hcCcCCCCCceEEEecccccchhhHH-HHHHHHhhhcCCC--cceEEEecCcccc
Q 015897 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPL--LREVKIGINPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~--~L~-~~~~~~~~~~i~L~L~d~D~~~~~l~-g~a~DL~d~~~~~--~~~v~i~~~~~ea 169 (398)
|+||+|||| |++|++.++ .++ ..++.+. +|. |+ |+++++++ +.+. +++..... ..+++.+++.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~--evv--Lv--Did~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDA--EIA--LM--DIDPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCC--EEE--EE--CCCHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 479999995 999999877 666 3444331 254 45 56677777 4444 55543122 2356666666999
Q ss_pred cCCCcEEEEeCCCC-CCCC--------------Cchhhh--------HHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 170 l~dADiViitag~~-rk~g--------------~~r~dl--------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++|||+||++++.+ ++++ ++|.+. +.+|++++++++++|+++ ||+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~-~p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEV-CPDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHH-CCCeEEEEcCChHH
Confidence 99999999998876 5555 567777 999999999999999999 69999999999999
Q ss_pred hHHHHHHHHCCCCCCceEEec-CchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchhhccc-
Q 015897 227 TNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD- 303 (398)
Q Consensus 227 ~~t~~~~k~~~~~~~kvig~g-t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~~- 303 (398)
++|++++++ +. .|+||+| +.+|+. +.+|+.+|+++++|+. ++.| || +.|+.+.+.+|+.+...+.+
T Consensus 152 ivt~~~~~~-~~--~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~~ 220 (431)
T PRK15076 152 MNTWAMNRY-PG--IKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRAA 220 (431)
T ss_pred HHHHHHhcC-CC--CCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHHH
Confidence 999999844 22 3899999 999986 7899999999999996 8999 99 78899999888655421111
Q ss_pred ---c-------------------------------ccc----HHHHHHHHH-------hhh-------HHHH-HhcCC--
Q 015897 304 ---H-------------------------------KWL----EEGFTETIQ-------KRG-------GLLI-KKWGR-- 328 (398)
Q Consensus 304 ---~-------------------------------~~~----~~el~~~v~-------~~~-------~~ii-~~~G~-- 328 (398)
. .|. .++..+... ++. .+.. +..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (431)
T PRK15076 221 AAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAER 300 (431)
T ss_pred HhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCc
Confidence 0 011 122211111 011 1111 22333
Q ss_pred ---CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 329 ---SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 329 ---t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
..++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|++|..+-++|
T Consensus 301 ~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g~lP 364 (431)
T PRK15076 301 IEIKRSREYASTIIEAIE-----TGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVGDLP 364 (431)
T ss_pred cccccchHHHHHHHHHHh-----cCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecCCCC
Confidence 235677888888876 7999999999999998889999999999999999999998887776
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=281.95 Aligned_cols=275 Identities=17% Similarity=0.141 Sum_probs=199.6
Q ss_pred CEEEEEcCCCchHHH--HHHHHHhcC-cCCCCCceEEEecccccchhhHH---HHHHHHhhhcCCCcceEEEecCccccc
Q 015897 97 VNIAVSGAAGMIANH--LLFKLAAGE-VLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~--la~~L~~~~-~~~~~~~i~L~L~d~D~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
+||+|||| |+. ++ +...|+... -+. .-.|.|||+| +++++ ..+..+.+.. ...-++..++|..+|+
T Consensus 1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~---~~ei~L~Did--~~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGG-GSS-FTPELVSGLLKTPEELP---ISEVTLYDID--EERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECC-chH-hHHHHHHHHHcChhhCC---CCEEEEEcCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHh
Confidence 59999997 443 22 333444333 111 1244457654 55654 3344444433 2234678889999999
Q ss_pred CCCcEEEEe---CCCC-C--------CCC---Cc-----hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 171 EDAEWALLI---GAKP-R--------GPG---ME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 171 ~dADiViit---ag~~-r--------k~g---~~-----r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
+|||+||.+ ||.. | +.| ++ .+....+|++++.++++.|+++ ||+||+||+|||+|++|+
T Consensus 73 ~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin~TNP~di~t~ 151 (425)
T cd05197 73 IDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLNFTNPAGEVTE 151 (425)
T ss_pred CCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEecCChHHHHHH
Confidence 999999986 4432 2 343 22 4566889999999999999999 699999999999999999
Q ss_pred HHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchhhcc----c--
Q 015897 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK----D-- 303 (398)
Q Consensus 231 ~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~----~-- 303 (398)
++++.+|. .|+||+|+. +.|+++.||+.+|+++++|+. +++| ||| ++||+++++|+|+...+. +
T Consensus 152 a~~~~~p~--~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~ 222 (425)
T cd05197 152 AVRRYVPP--EKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKS 222 (425)
T ss_pred HHHHhCCC--CcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccC
Confidence 99998632 389999999 999999999999999999996 8999 998 999999999988763222 1
Q ss_pred ------c-------ccc------------------------HHH-HH---------HHHHhhh---HHH-----------
Q 015897 304 ------H-------KWL------------------------EEG-FT---------ETIQKRG---GLL----------- 322 (398)
Q Consensus 304 ------~-------~~~------------------------~~e-l~---------~~v~~~~---~~i----------- 322 (398)
. .|. .++ +. +.+.+.. ++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 302 (425)
T cd05197 223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV 302 (425)
T ss_pred ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence 0 010 000 00 0001100 111
Q ss_pred -HHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 323 -IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 323 -i~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
+..++...++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|++|..+.++|
T Consensus 303 ~~~~r~~~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~vg~lp 370 (425)
T cd05197 303 ELIKRGGRKYSEAAIPLIRALL-----NDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVGPLD 370 (425)
T ss_pred hhhhcCCcccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecccCCCC
Confidence 112344556788888888886 8999999999999998899999999999999999999888877776
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=272.30 Aligned_cols=276 Identities=18% Similarity=0.169 Sum_probs=201.0
Q ss_pred CEEEEEcCCCchHHH-HHHHHHhc-CcCCCCCceEEEecccccchhhHHHH---HHHHhhhcCCCcceEEEecCcccccC
Q 015897 97 VNIAVSGAAGMIANH-LLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~-la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~---a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
+||+|||| |++-.. +...|+.. .-+. . -.|.|+|+|. +++++.. +.++.+.. .....+..++|..++++
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~-~--~ei~L~Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELP-V--TELVLVDIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRREALE 74 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCC-C--CEEEEecCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999997 554221 33444442 2122 1 2444577663 6777543 33333322 22236777889999999
Q ss_pred CCcEEEEeCCCCCCCCCchhh--------------------hHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHH
Q 015897 172 DAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~d--------------------ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (398)
|||+||++.+.++.+++++.+ ...+|++++.+++++|+++ ||+||+|++|||+|++|++
T Consensus 75 gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~-~Pda~lin~TNP~~ivt~a 153 (419)
T cd05296 75 GADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEEL-APDAWLINFTNPAGIVTEA 153 (419)
T ss_pred CCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHH
Confidence 999999987766555554433 4789999999999999999 6999999999999999999
Q ss_pred HHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchh-hcc-------
Q 015897 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE-IIK------- 302 (398)
Q Consensus 232 ~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~-~i~------- 302 (398)
+++.+ +.|+||+|+. +.|+++.+|+.+|+++++|+. +++| || +.|+.+.+.+|+.+.. ++.
T Consensus 154 ~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~ 223 (419)
T cd05296 154 VLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLS 223 (419)
T ss_pred HHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhhccc
Confidence 99886 4499999987 699999999999999999996 9999 99 7888889888876553 211
Q ss_pred ---ccccc--------------------HHHHHHHHH----hhh-------HHH---------------HHhcCCCcHHH
Q 015897 303 ---DHKWL--------------------EEGFTETIQ----KRG-------GLL---------------IKKWGRSSAAS 333 (398)
Q Consensus 303 ---~~~~~--------------------~~el~~~v~----~~~-------~~i---------------i~~~G~t~~~s 333 (398)
+..|. .++..++.. .++ .++ +..++++.|+.
T Consensus 224 ~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~e 303 (419)
T cd05296 224 FEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYSE 303 (419)
T ss_pred cccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchHH
Confidence 00010 111111100 011 111 12445555778
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
.|..|+++|. +|++.++.++|.++|..-++|+|.++++||.++++|++|..+-++|
T Consensus 304 ~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~vg~lP 359 (419)
T cd05296 304 AALALISAIY-----NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPVGPLP 359 (419)
T ss_pred HHHHHHHHHh-----cCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccCCCCC
Confidence 8889988886 7999999999999998889999999999999999999888877776
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=239.66 Aligned_cols=140 Identities=31% Similarity=0.482 Sum_probs=127.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||||+|+||+++++.|+.+++.+| |.| + |+++++++|.++||+|+.+....++.++.++|++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e---i~L--~--D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE---IVL--I--DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE---EEE--E--ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc---eEE--e--ccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999879999999999999999774 554 4 77888999999999999865556778888999999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
|+++|.||+||++|.+++..|+++++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtNPvd~~t~~~~~~s-~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTNPVDVMTYVAQKYS-GFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SSSHHHHHHHHHHHH-TSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCCcHHHHHHHHHHhh-CcCcccCcC
Confidence 99999999999999999999999999999999999 599999999999999999999998 6776 7786
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=240.47 Aligned_cols=144 Identities=31% Similarity=0.443 Sum_probs=128.1
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc----ccccHHHHHHHHHhhhHHHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLI 323 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~----~~~~~~el~~~v~~~~~~ii 323 (398)
|.||++|++++||+++|++|++|+. |||||||++|||+||+++|+|.|+.++.+. .++..+++.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~-~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNA-YVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEE-EEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEE-EEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 6899999999999999999999995 999999999999999999999999766543 24566899999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCc-eEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED-IVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 324 ~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~d-v~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
+.||++++.++|.++++.+++|+ .|++.++|+|++++| +||++++ +|||+||++|++|+ +++++ ++|++
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail--~~~~~i~~~sv~~~g-~yg~~~~~v~~s~P~~ig~~Gv--~~i~~~~~L~~ 150 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAIL--KDERRILPVSVYLDG-EYGIPDGCVYFSVPVVIGKNGV--EKIVEDLPLSE 150 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH--TTHTEEEEEEEEEES-GGGEESSSEEEEEEEEEETTEE--EEEECSBSSTH
T ss_pred eeccccCcCCHHHHHHHHHHHHh--hcccccccceecccc-ccCcccccceecceEEEcCCee--EEEeCCCCCCH
Confidence 99944444458889999999989 788999999999999 7999665 99999999999999 88999 99875
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=259.06 Aligned_cols=275 Identities=16% Similarity=0.102 Sum_probs=207.6
Q ss_pred CEEEEEcCCCchHHHHHH--HHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCcccccC
Q 015897 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~--~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~ 171 (398)
+||+|||| |++|++++. .++.. .+.+. +|.| + |+++++++....++.+..... ..+++.+++.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~--eV~L--~--Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGS--TIAL--M--DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCC--EEEE--E--CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999995 999999877 56544 44331 3554 4 677888998888887654222 235666777789999
Q ss_pred CCcEEEEeCCCCCCCCCch----------------------hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 172 dADiViitag~~rk~g~~r----------------------~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
|||+||++.+..+.++.++ .....+|++++.++++.+.++ +|++|+|++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHHH
Confidence 9999999887655444433 556789999999999999999 69999999999999999
Q ss_pred HHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchhhccc---c-
Q 015897 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (398)
Q Consensus 230 ~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~~---~- 304 (398)
+++++.++ .|+||+|+. +.|+++.+|+.+|+++++|+. +++| || +.||...+.+|+.+...+.+ +
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999984 489999988 899999999999999999996 8999 99 78888888888765432211 0
Q ss_pred --c------cc---------------------------HHHHHHHH--------------HhhhHH-H----------HH
Q 015897 305 --K------WL---------------------------EEGFTETI--------------QKRGGL-L----------IK 324 (398)
Q Consensus 305 --~------~~---------------------------~~el~~~v--------------~~~~~~-i----------i~ 324 (398)
. |. .++..... .+.-+. . ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEE 302 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchh
Confidence 0 00 00110000 000000 0 01
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 325 ~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
..+...++..|+.|+++|. +|++.++.++|.++|..-|+|+|.++++||.++++|++|..+-++|
T Consensus 303 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~g~lp 367 (423)
T cd05297 303 LDPVKRSGEYASPIIEALV-----TGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKIGPLP 367 (423)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecccCCCC
Confidence 1222335677888888886 7999999999999998899999999999999999999998887776
|
linked to 3D####ucture |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=253.50 Aligned_cols=273 Identities=15% Similarity=0.110 Sum_probs=189.3
Q ss_pred CEEEEEcCCCchHHH--HHHHHHhcC-cCCCCCceEEEecccccchhhHH---HHHHHHhhhcCCCcceEEEecCccccc
Q 015897 97 VNIAVSGAAGMIANH--LLFKLAAGE-VLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~--la~~L~~~~-~~~~~~~i~L~L~d~D~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
|||+|||| |++ ++ +...|+... .++ . -.|.|+|+ ++++++ ..+..+.+.. +..-++..++|..+|+
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~-~--~ei~L~DI--d~~rl~~v~~l~~~~~~~~-g~~~~v~~Ttdr~eAl 72 (437)
T cd05298 1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFP-L--RELVLYDI--DAERQEKVAEAVKILFKEN-YPEIKFVYTTDPEEAF 72 (437)
T ss_pred CeEEEECC-cHH-HHHHHHHHHHhCcccCC-C--CEEEEECC--CHHHHHHHHHHHHHHHHhh-CCCeEEEEECCHHHHh
Confidence 69999997 443 22 344444442 122 1 23445655 556665 3344443332 2234677889999999
Q ss_pred CCCcEEEEe---CCCC-C--------CCCC---c-----hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 171 EDAEWALLI---GAKP-R--------GPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 171 ~dADiViit---ag~~-r--------k~g~---~-----r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
+|||+||.+ ||.. | |.|. + ......||++++.++++.|+++ ||+||+|++|||+|++|+
T Consensus 73 ~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~-~pda~lin~tNP~~~vt~ 151 (437)
T cd05298 73 TDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKY-SPDAWILNYSNPAAIVAE 151 (437)
T ss_pred CCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHH
Confidence 999999986 4432 2 3332 2 3456899999999999999999 699999999999999999
Q ss_pred HHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEc-Cccchhhcc----cc
Q 015897 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK----DH 304 (398)
Q Consensus 231 ~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~-G~p~~~~i~----~~ 304 (398)
++++..|. .|+||.|.. ..-++..+|+.+|+++++|+. .+.| || +.|+.+.+.+ |+.+...+. +.
T Consensus 152 ~~~~~~~~--~kviGlC~~--~~~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~ 222 (437)
T cd05298 152 ALRRLFPN--ARILNICDM--PIAIMDSMAAILGLDRKDLEP-DYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKEN 222 (437)
T ss_pred HHHHHCCC--CCEEEECCc--HHHHHHHHHHHhCCCHHHceE-EEEeecc----hhhhhheEECCCCchHHHHHHHHhcc
Confidence 99988533 389999977 677899999999999999995 7799 99 6888899998 876542221 10
Q ss_pred c--------------cc---------------------------HHHHHHH-----------HHhhhHHH---H------
Q 015897 305 K--------------WL---------------------------EEGFTET-----------IQKRGGLL---I------ 323 (398)
Q Consensus 305 ~--------------~~---------------------------~~el~~~-----------v~~~~~~i---i------ 323 (398)
. |. .++..++ +++...++ .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~ 302 (437)
T cd05298 223 GYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIET 302 (437)
T ss_pred CCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 1 11 1111111 11111111 1
Q ss_pred ------HhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 324 ------KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 324 ------~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
+.++. .|+..+..|+++|. +|++.++++|++++| .| ++|+|+++|+||+++++|+.+..+-+||
T Consensus 303 ~~~~~~~~~~~-~ya~~a~~ii~aI~-----~d~~~~~~vnv~n~G-~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP 373 (437)
T cd05298 303 GTAEGSTFHVD-VHGEYIVDLAASIA-----YNTKERFLVIVENNG-AIPNLPDDAMVEVPAYIGSNGPEPLVVGKIP 373 (437)
T ss_pred CChhhhhhhcc-chHHHHHHHHHHHH-----cCCCeEEEEEeecCC-ccCCCCCCcEEEEEEEEeCCCceecccCCCC
Confidence 11111 24556666766665 799999999999999 56 4789999999999999999887777776
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=237.73 Aligned_cols=278 Identities=19% Similarity=0.210 Sum_probs=194.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCC-Cc-eEEEecccccchhhHH---HHHHHHhhhcCCCcceEEEecCcccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPD-QP-IALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYEL 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~-~~-i~L~L~d~D~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (398)
++.||+|||| |+++.. .++.+.+...+ -+ ..|.|+|+ ++++++ ..+..+.+.. ....++..++|..+|
T Consensus 2 ~~~KI~iIGg-GSt~tp---~~v~g~l~~~e~l~~~el~L~Di--d~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~eA 74 (442)
T COG1486 2 KKFKIVIIGG-GSTYTP---KLLLGDLARTEELPVRELALYDI--DEERLKIIAILAKKLVEEA-GAPVKVEATTDRREA 74 (442)
T ss_pred CcceEEEECC-CccccH---HHHHHHHhcCccCCcceEEEEeC--CHHHHHHHHHHHHHHHHhh-CCCeEEEEecCHHHH
Confidence 4579999997 555444 33333332221 12 25666755 556665 2233333322 223467788999999
Q ss_pred cCCCcEEEEe---CCCC---------CCCCC---c-----hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 170 FEDAEWALLI---GAKP---------RGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 170 l~dADiViit---ag~~---------rk~g~---~-----r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
|+|||+|+.+ ||.. .|.|. + ......|++|++.++++.|+++ ||+||+||+|||+.++|
T Consensus 75 l~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~-~P~Aw~lNytNP~~~vT 153 (442)
T COG1486 75 LEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKV-CPNAWMLNYTNPAAIVT 153 (442)
T ss_pred hcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHh-CCCceEEeccChHHHHH
Confidence 9999999986 3322 23332 2 3345689999999999999999 69999999999999999
Q ss_pred HHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCc-CceeeEEEEe-ccCCCccccccceEEcCccchh-hcc---c
Q 015897 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE-IIK---D 303 (398)
Q Consensus 230 ~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~-~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~-~i~---~ 303 (398)
+++.|++|.+ |+||.|.. ..-....||+.||+.+ ++++. -+.| || +.||..++.+|.++.. ++. +
T Consensus 154 eAv~r~~~~~--K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~~-~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~ 224 (442)
T COG1486 154 EAVRRLYPKI--KIVGLCHG--PIGIAMELAEVLGLEPREDLRY-RVAGLNH----MVWILRVRDDGEDLYPELLEALEE 224 (442)
T ss_pred HHHHHhCCCC--cEEeeCCc--hHHHHHHHHHHhCCCchhceeE-EEeechh----hhhhhHhhhcCccchHHHHHHHhc
Confidence 9999987523 89999887 6788999999999975 99995 7899 99 6788888888865432 111 0
Q ss_pred --------------cccc---------------------H--------HHH------HHHHHhhhHHH------------
Q 015897 304 --------------HKWL---------------------E--------EGF------TETIQKRGGLL------------ 322 (398)
Q Consensus 304 --------------~~~~---------------------~--------~el------~~~v~~~~~~i------------ 322 (398)
..|. . +++ .+.++++.-+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~ 304 (442)
T COG1486 225 GGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEK 304 (442)
T ss_pred cccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcC
Confidence 0010 0 001 01222221111
Q ss_pred ---HHhcCCC--cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 323 ---IKKWGRS--SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 323 ---i~~~G~t--~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
.++++.+ .++..|..|+++|. +|++.++.++|.++|.+-++|+|.++++||+++++|++|.-+..||
T Consensus 305 p~~~~~~~~~~~~~~e~a~~ii~Ai~-----~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g~lP 376 (442)
T COG1486 305 PEELEKRIGAGKYSSEYASNIINAIE-----NNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVGDLP 376 (442)
T ss_pred chhhhhcCCcccccHHHHHHHHHHHh-----cCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccCCCC
Confidence 1234443 55778899998886 8999999999999999999999999999999999999775555555
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=156.67 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=111.6
Q ss_pred EEEEEcCCCchHHHH-HH-HHHhcCcCCCCCceEEEecccccchhhHH---HHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 98 NIAVSGAAGMIANHL-LF-KLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 98 KI~IiGA~G~vG~~l-a~-~L~~~~~~~~~~~i~L~L~d~D~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
||+|||| |++-... +. .+...+-++ .-.|.|+| +|+++|+ ..+..+.+.. ....+++.++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~---~~ei~L~D--id~~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELS---GSEIVLMD--IDEERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTST---EEEEEEE---SCHHHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCC---CcEEEEEc--CCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999996 7766663 23 333333333 13555665 5567776 4455544433 333467788999999999
Q ss_pred CcEEEEeCC------------CCCCCCCc----------hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 173 AEWALLIGA------------KPRGPGME----------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 173 ADiViitag------------~~rk~g~~----------r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
||+||.+.. .|.+.|.. ......|+++++.++++.|+++ ||+||+||+|||+.++|+
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~-~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEEL-CPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHH-TTTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEeccChHHHHHH
Confidence 999999642 34455432 3466899999999999999999 699999999999999999
Q ss_pred HHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCc
Q 015897 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (398)
Q Consensus 231 ~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv 265 (398)
++.|+++.. |++|.|.. ..-+...+|+.||.
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999998655 89999987 67788999998873
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-07 Score=84.44 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=67.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh----h---c-C------CCcceEEEe
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----S---L-F------PLLREVKIG 163 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d----~---~-~------~~~~~v~i~ 163 (398)
||+|+|| |.+|..++..++..|. ++.| + |.+++.++.....+.+ . . . ....+++++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l--~--d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTL--Y--DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEE--E---SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEE--E--ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999995 9999999999999986 4655 4 5565555433222222 1 0 0 012356665
Q ss_pred cCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
+ +++++.|||+||-+. .++.++-+++.+.+.+++.|++++ +||...+-
T Consensus 71 ~-dl~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~ 118 (180)
T PF02737_consen 71 T-DLEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLS 118 (180)
T ss_dssp S-SGGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-
T ss_pred c-CHHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCC
Confidence 5 556666999999984 246789999999999997788887 88876553
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-07 Score=88.10 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=73.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc----C-C---------Ccc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----F-P---------LLR 158 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~----~-~---------~~~ 158 (398)
+.++.||+|||| |.+|..+|..++..|. ++.+ + |++++.++.....+.... . . ...
T Consensus 2 ~~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l--~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 71 (286)
T PRK07819 2 SDAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLV--F--ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALA 71 (286)
T ss_pred CCCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHh
Confidence 445679999995 9999999999999886 3554 4 566666553222211110 0 0 112
Q ss_pred eEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhc-CCCeEEEEECCCchhH
Q 015897 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNTN 228 (398)
Q Consensus 159 ~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a-~p~a~vIvvtNP~d~~ 228 (398)
+++.+ ++++++++||+||.+. .++.++-+++...+++++ .|++++ +||....-
T Consensus 72 ~l~~~-~~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~ 125 (286)
T PRK07819 72 RLRFT-TDLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP 125 (286)
T ss_pred CeEee-CCHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence 44454 4568899999999984 346778888888999985 567766 77776643
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=86.45 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh----hc----C--CCcceEEEecC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL----F--PLLREVKIGIN 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d----~~----~--~~~~~v~i~~~ 165 (398)
..||+|||| |.+|+.++..++..|+ +|.+ + |++++.++.....+.. .. . ....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l--~--D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVA--W--DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 468999995 9999999999999886 3554 4 5555544322211111 10 0 01124555566
Q ss_pred cccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHH
Q 015897 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL 233 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~ 233 (398)
..+++++||+|+.+. .+|.++-+++...+.+++.|++ |+.||...+...-+.
T Consensus 77 l~~av~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la 128 (321)
T PRK07066 77 IEACVADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDFY 128 (321)
T ss_pred HHHHhcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHH
Confidence 668899999999984 3356788888888999876777 559998876444343
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=84.72 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=94.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh----c-----CC-----CcceEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-----FP-----LLREVK 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~----~-----~~-----~~~~v~ 161 (398)
.+||+|||| |.+|..+|..++..|+ +|.| + |++++.++.-...++.. . .. .+..++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l--~--D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVL--K--DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEE--E--eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 469999995 9999999999999665 3655 3 66655543221111111 0 00 011232
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHHHHHCCCCC
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAPSIP 240 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~~k~~~~~~ 240 (398)
. +.++.+++|||+||-.. .+|..+-+++.+++.++++|++++ +||...+ ++.+. ..+ ..|
T Consensus 73 ~-~~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia-~~~-~rp 133 (307)
T COG1250 73 P-TTDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELA-EAL-KRP 133 (307)
T ss_pred c-cCchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHH-HHh-CCc
Confidence 2 34677999999999884 567899999999999998889988 9999876 44443 222 222
Q ss_pred CceEE------------------ecCchhHHHHHHHHHHHcCcCc
Q 015897 241 AKNFH------------------ALTRLDENRAKCQLALKAGVFY 267 (398)
Q Consensus 241 ~kvig------------------~gt~lDs~Rl~~~lA~~lgv~~ 267 (398)
.|++| -.|.-++...-..+++++|..|
T Consensus 134 er~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 134 ERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred hhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 23333 3455677777777888888543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.5e-06 Score=80.93 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc------CCC---------cceE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL------FPL---------LREV 160 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~------~~~---------~~~v 160 (398)
++||+|||+ |.+|..+|..++..|. +|.+ + |++++.++.....+++.. ... ...+
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTI--Y--DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 569999995 9999999999998875 3544 4 555555443222111100 000 1245
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+.+++..+++++||+||.+.. .+.++.+++.+.+.+++.+++++ ++|....
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~ 123 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTL 123 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccC
Confidence 566665678999999999853 23567777777788875556654 5666554
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=73.71 Aligned_cols=104 Identities=21% Similarity=0.117 Sum_probs=68.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC--CCcceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~dAD 174 (398)
|||+|||++|++|++++..|+..+. +|.+ + ++++++++..+.++.+... ++...+.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v--~--~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIII--G--SRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEE--E--EcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998773 3544 2 6777777766665443220 11111222 35678899999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+||++.. .+.+.++.+.+.... .+.+||-++||.+.
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~l-~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDEL-SGKLVISPVVPLAS 106 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHhc-cCCEEEEeccCcee
Confidence 9999864 233444445555432 35678999999753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-06 Score=79.93 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHH-------HHHhhhc-C------CCcceEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-------MELEDSL-F------PLLREVK 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a-------~DL~d~~-~------~~~~~v~ 161 (398)
+.||+|||+ |.+|..++..++..|. ++.+ + |+++++++... .++.+.. . .....++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~--~--d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVM--V--DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 568999995 9999999999998875 3554 3 66666653110 1111110 0 0112444
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~ 241 (398)
.+ .+++++++||+||++.. .+..+..++.+.+.+++++++++ +||-..+-...+.+.. ..+.
T Consensus 73 ~~-~~~~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~-~~~~ 134 (282)
T PRK05808 73 GT-TDLDDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAAT-KRPD 134 (282)
T ss_pred Ee-CCHHHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhh-CCCc
Confidence 44 45678999999999852 23556677777788876667766 6766665443443433 2333
Q ss_pred ceEEe
Q 015897 242 KNFHA 246 (398)
Q Consensus 242 kvig~ 246 (398)
|.+++
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 44443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=88.62 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh----c----C------CCcceEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L----F------PLLREVK 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~----~----~------~~~~~v~ 161 (398)
..||+|||| |.+|..+|..++..|+ +|.| + |++++.++.-...+... . . .....++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l--~--d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIM--K--DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 468999995 9999999999999986 4655 4 66666654221111111 0 0 0113455
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHH
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC 232 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~ 232 (398)
.+ .++++++|||+||-+. .++.++-+++..+++++++|++++ +||...+ ++.+.
T Consensus 383 ~~-~~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la 437 (715)
T PRK11730 383 PT-LDYAGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLA 437 (715)
T ss_pred Ee-CCHHHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH
Confidence 54 4678999999999984 456889999999999997788776 9998776 44544
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=78.42 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=65.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc---CC------CcceEEEec
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FP------LLREVKIGI 164 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~---~~------~~~~v~i~~ 164 (398)
.+++||+|||+ |.+|..++..|+..|. +|.+ + |++++.++.....+.+.. .+ ....++.++
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~--~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVL--I--DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 44679999995 9999999999998774 3544 3 666666654433222111 00 112344555
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+..+++++||+||++... ...+..++...+..+..++++| +||...+
T Consensus 72 ~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~ 118 (311)
T PRK06130 72 GLAAAVSGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIF--ATNTSGL 118 (311)
T ss_pred CHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEE--EECCCCC
Confidence 555679999999998532 1334555555666664455554 4555444
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-06 Score=89.06 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=93.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh----cC-C---------CcceEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----LF-P---------LLREVK 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~----~~-~---------~~~~v~ 161 (398)
..||+|||| |.+|..++..++..|+ +|.| + |++++.++.-...+... .. . ....++
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l--~--d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVL--K--DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCCC-----cEEE--e--cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 468999995 9999999999999886 4665 4 66666654321111111 00 0 112455
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHHHHHCCCCC
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAPSIP 240 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~~k~~~~~~ 240 (398)
.+ .++++++|||+||-+. .+|.++-+++.+.+.++++|++++ +||...+ ++.+. ... ..|
T Consensus 405 ~~-~~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la-~~~-~~p 465 (737)
T TIGR02441 405 PT-LDYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA-AVS-SRP 465 (737)
T ss_pred Ee-CCHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH-hhc-CCc
Confidence 54 4678999999999883 457889999999999998788877 8998775 44443 222 222
Q ss_pred CceEE------------------ecCchhHHHHHHHHHHHcCcCc
Q 015897 241 AKNFH------------------ALTRLDENRAKCQLALKAGVFY 267 (398)
Q Consensus 241 ~kvig------------------~gt~lDs~Rl~~~lA~~lgv~~ 267 (398)
.|++| ..|.-++.-.-..+++.+|..|
T Consensus 466 ~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 510 (737)
T TIGR02441 466 EKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVV 510 (737)
T ss_pred cceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 23333 3466566555666778888554
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=77.47 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh-------hc--CC--------Ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-------SL--FP--------LLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d-------~~--~~--------~~~ 158 (398)
..||+|||+ |.+|..++..++..|. +|.+ + |++++.++.....+.. .. .. ...
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTI--V--DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 468999995 9999999999999875 3544 3 6676666532221111 00 00 011
Q ss_pred eEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 159 ~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
++..++ +++++++||+||.+... +.++.+++.+.+.+++.++++++ ||...+
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~--S~tsg~ 124 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIA--SNTSGI 124 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEE--EcCCCC
Confidence 233433 45789999999998532 34566777777888766677664 555443
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=88.13 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh---h-hc-----C-----CCcceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE---D-SL-----F-----PLLREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~---d-~~-----~-----~~~~~v 160 (398)
+..||+|||| |.+|..+|..++..|+ +|.| + |.+++.++.-...+. + .. . .....+
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l--~--d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PIVM--K--DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 3468999995 9999999999999886 4655 4 666665542111111 1 00 0 011245
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHHHHHCCCC
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAPSI 239 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~~k~~~~~ 239 (398)
+.+ .++++++|||+||-+. .++.++-+++..++.++++|++++ +||...+ ++.+. ... ..
T Consensus 382 ~~~-~~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia-~~~-~~ 442 (714)
T TIGR02437 382 TPT-LSYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLA-KAL-KR 442 (714)
T ss_pred EEe-CCHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH-hhc-CC
Confidence 554 4678899999999984 356889999999999998788877 9998775 44443 222 22
Q ss_pred CCceEE------------------ecCchhHHHHHHHHHHHcCcCc
Q 015897 240 PAKNFH------------------ALTRLDENRAKCQLALKAGVFY 267 (398)
Q Consensus 240 ~~kvig------------------~gt~lDs~Rl~~~lA~~lgv~~ 267 (398)
|.|++| ..|.-++.-.-..+++.+|..|
T Consensus 443 p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 488 (714)
T TIGR02437 443 PENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTP 488 (714)
T ss_pred cccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 223333 2355566555556677777554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=78.29 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc------CCC--------cceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL------FPL--------LREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~------~~~--------~~~v 160 (398)
+.+||+|||+ |.+|..++..|+..|. +|.+ + |++++.++.....+.... ... ...+
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLL--N--DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3569999995 9999999999998875 3554 4 667666654332222110 000 1224
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+.+ ++++++++||+||.+... +..+.+.+.+.+.+++.++++++ ||...+
T Consensus 73 ~~~-~~~~~~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~ 122 (292)
T PRK07530 73 STA-TDLEDLADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAILA--TNTSSI 122 (292)
T ss_pred Eee-CCHHHhcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEEE--EcCCCC
Confidence 444 456789999999998421 23444555566777656677664 555443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=77.62 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH-------HHhhhc-C-C-----CcceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSL-F-P-----LLREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~-------DL~d~~-~-~-----~~~~v 160 (398)
++.||+|||+ |.+|..++..|+..|. +|.+ + |.+.+.++.... ++.+.. . . .....
T Consensus 3 ~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~--~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (295)
T PLN02545 3 EIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWL--L--DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRI 72 (295)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce
Confidence 4579999995 9999999999998874 3544 4 666665542111 121110 0 0 00123
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
.. +++++++++||+||.+.. ++.++...+...+.+++.+++++ +||-..+
T Consensus 73 ~~-~~~~~~~~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i 122 (295)
T PLN02545 73 RC-TTNLEELRDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAIL--ASNTSSI 122 (295)
T ss_pred Ee-eCCHHHhCCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence 33 346788999999999842 23455666666677765677765 4555443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=86.96 Aligned_cols=110 Identities=10% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHH----hhhcC-C---------CcceE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMEL----EDSLF-P---------LLREV 160 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL----~d~~~-~---------~~~~v 160 (398)
..||+|||| |.+|..+|..++. .|+ +|.| + |.+++.++.....+ ..... . ....+
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l--~--d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI-----PVRI--K--DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 469999995 9999999999884 675 3554 4 55555544222111 11100 0 11345
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHH
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC 232 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~ 232 (398)
+.+ .++++++|||+||-+. .++.++-+++..++.+++.|++++ +||...+ ++.+.
T Consensus 374 ~~~-~~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la 429 (699)
T TIGR02440 374 TGT-TDYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA 429 (699)
T ss_pred EEe-CChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH
Confidence 555 4578999999999984 446889999999999997778776 8998775 44443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=87.05 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=92.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcCcCCCCCceEEEecccccchhhHHHHHHHHhhh---c------C-----CCcceE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS---L------F-----PLLREV 160 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~---~------~-----~~~~~v 160 (398)
..||+|||| |.+|..+|..++ ..|+ +|.| + |.+.+.++.....+++. . . ....++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l--~--d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRI--K--DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 469999995 999999999998 7675 4554 4 55555544221111111 0 0 012356
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHHHHHCCCC
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAPSI 239 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~~k~~~~~ 239 (398)
+.++ ++++++|||+||-+. .+|.++-+++...++++++|++++ +||...+ ++.+. ... ..
T Consensus 379 ~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la-~~~-~~ 439 (708)
T PRK11154 379 SGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIA-AAA-AR 439 (708)
T ss_pred EEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH-Hhc-Cc
Confidence 6654 568999999999984 457899999999999998888887 8998775 44443 222 22
Q ss_pred CCceEE------------------ecCchhHHHHHHHHHHHcCcCc
Q 015897 240 PAKNFH------------------ALTRLDENRAKCQLALKAGVFY 267 (398)
Q Consensus 240 ~~kvig------------------~gt~lDs~Rl~~~lA~~lgv~~ 267 (398)
|.|++| -.|.-++.-.-..+++.+|..|
T Consensus 440 p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p 485 (708)
T PRK11154 440 PEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (708)
T ss_pred ccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 223333 3455555555555667777654
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.8e-05 Score=71.50 Aligned_cols=124 Identities=24% Similarity=0.237 Sum_probs=81.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
||+++|+| +|++|++++..++..+. +|.+ ..-+.++++++.+..+.-. + ......++.+.||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~i---gs~r~~~~~~a~a~~l~~~-------i-~~~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVII---GSSRGPKALAAAAAALGPL-------I-TGGSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEE---ecCCChhHHHHHHHhhccc-------c-ccCChHHHHhcCCE
Confidence 68999999 59999999999999885 4654 2234566677666655422 1 23467899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch---------------hHHHHHHHHCCCCC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---------------TNALICLKNAPSIP 240 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---------------~~t~~~~k~~~~~~ 240 (398)
||++.- ..-+.++.+.++.. -.+-+||-.|||.+ .-+++++++.|+-
T Consensus 64 VvLAVP----------------~~a~~~v~~~l~~~-~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a- 125 (211)
T COG2085 64 VVLAVP----------------FEAIPDVLAELRDA-LGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA- 125 (211)
T ss_pred EEEecc----------------HHHHHhHHHHHHHH-hCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-
Confidence 999853 23444555555553 24788999999953 2355666665432
Q ss_pred CceEEecCchhHHHH
Q 015897 241 AKNFHALTRLDENRA 255 (398)
Q Consensus 241 ~kvig~gt~lDs~Rl 255 (398)
|++-....+...++
T Consensus 126 -kVVkAFn~i~a~~l 139 (211)
T COG2085 126 -KVVKAFNTIPAAVL 139 (211)
T ss_pred -chhhhhcccCHHHh
Confidence 55544444443333
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.9e-06 Score=66.52 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=65.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-CcccccCCCcEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADiV 176 (398)
||+||| +|++|++++..|+..+. .. +.|.+. .++++++++..+.++. +.... +..+++++||+|
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~-~~-~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGI-KP-HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS--G-GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC-Cc-eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 799999 59999999999999986 21 234431 3788888776665432 12233 678999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++... +.+.++.+.+... .++..+|-++||
T Consensus 66 ilav~p----------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVKP----------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-G----------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEECH----------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 998632 3566666666333 578899988886
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=76.09 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-----C---------CcceEEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-----P---------LLREVKI 162 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-----~---------~~~~v~i 162 (398)
.||+|||+ |.+|..+|..|+..|. +|.+ + |++++.++.....+..... . ....++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~--~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTL--V--DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998875 3554 3 6666666543322111100 0 0123555
Q ss_pred ecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q 015897 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (398)
Q Consensus 163 ~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~v 218 (398)
+++..+++++||+||.+... +..+.+.+...+.+++.+++++
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~il 113 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPE--------------KLELKKAVFETADAHAPAECYI 113 (288)
T ss_pred eCcHHHhhcCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCcEE
Confidence 66666899999999998532 2344555555666765566654
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=82.13 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh----c-CC---------Ccce
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-FP---------LLRE 159 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~----~-~~---------~~~~ 159 (398)
.+..||+|||| |.+|..+|..++..|+ ++.+ + |++++.++.....+++. . .. ....
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l--~--D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLL--Y--DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 35679999995 9999999999999886 3554 4 66767665321111111 0 00 1123
Q ss_pred EEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 160 v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++.++ +++++++||+||.+. .++..+-+.+...+.+++++++++ +||...
T Consensus 75 i~~~~-~~~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntSt 124 (507)
T PRK08268 75 LRPVE-ALADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSS 124 (507)
T ss_pred eEEeC-CHHHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 55544 567899999999884 234566666667788875577766 555544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=71.06 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=69.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC---C---CcceEEEecCcccccC
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF---P---LLREVKIGINPYELFE 171 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~---~---~~~~v~i~~~~~eal~ 171 (398)
||+|+|| |+.|.++|..|..++. .|.| + .++++.++..-.+ +... + +..++.+++|..++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l--~--~~~~~~~~~i~~~--~~n~~~~~~~~l~~~i~~t~dl~~a~~ 68 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTL--W--GRDEEQIEEINET--RQNPKYLPGIKLPENIKATTDLEEALE 68 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEE--E--TSCHHHHHHHHHH--TSETTTSTTSBEETTEEEESSHHHHHT
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEE--E--eccHHHHHHHHHh--CCCCCCCCCcccCcccccccCHHHHhC
Confidence 8999995 9999999999999984 3655 4 4454444422221 2210 1 1135778888889999
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC-----CchhHHHHHHHHC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNA 236 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-----P~d~~t~~~~k~~ 236 (398)
+||+||++.- ....+++.+.|..+..++..+|+++- ....+..++.+..
T Consensus 69 ~ad~IiiavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~ 122 (157)
T PF01210_consen 69 DADIIIIAVP----------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL 122 (157)
T ss_dssp T-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH
T ss_pred cccEEEeccc----------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh
Confidence 9999998742 35677888888887545666665542 2234555555554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=81.50 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh----hcC-C---------CcceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SLF-P---------LLREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d----~~~-~---------~~~~v 160 (398)
+..||+|||+ |.+|..+|..++..|. ++.+ + |++++.++.....+++ ... . .+.++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l--~--d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 73 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH-----QVLL--Y--DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRL 73 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 3568999995 9999999999999886 4554 4 6777766532111111 100 0 11235
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+.++ +++++++||+||.+. .++..+-+.+...+.+++.|+++ ++||...+
T Consensus 74 ~~~~-~~~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I--lasnTStl 123 (503)
T TIGR02279 74 IPVT-DLHALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI--IASNTSSL 123 (503)
T ss_pred EEeC-CHHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE--EEECCCCC
Confidence 5544 568899999999984 23456777777778888656665 47777664
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.2e-05 Score=75.33 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=81.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH----HHHHHHhhhcC------C-------
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDSLF------P------- 155 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~----g~a~DL~d~~~------~------- 155 (398)
+.++..|+|+|| |.+|+.+|+--++.|+ ++.| + |.+++.|. +....+.+.+. +
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l--~--d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v 77 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWL--V--DANEDALSRATKAISSSLKRVAKKKKADDPVALEEFV 77 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC-----ceEE--e--cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHH
Confidence 345678999995 9999999999999887 4665 4 66666653 23333322210 0
Q ss_pred --CcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHH
Q 015897 156 --LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC 232 (398)
Q Consensus 156 --~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~ 232 (398)
.+..+..+++-..+++|||+||.. ..+|++|-+++.+.|++.|.+++++ +||...+ ++.++
T Consensus 78 ~~~l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl~lt~ia 141 (298)
T KOG2304|consen 78 DDTLDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSLSLTDIA 141 (298)
T ss_pred HHHHHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccceeHHHHH
Confidence 112345567778888999988766 5789999999999999998777776 8999776 45444
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=77.07 Aligned_cols=108 Identities=13% Similarity=0.152 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh---c-----CCC--cceEEEecC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS---L-----FPL--LREVKIGIN 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~---~-----~~~--~~~v~i~~~ 165 (398)
.+||+|||+ |.+|+.++..|+..|. +|.+ + |+++++++.....+... . .+. ...+++.++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v--~--D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAV--F--DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 358999995 9999999999999886 3544 4 56666655332111100 0 001 123556666
Q ss_pred cccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
..+++++||+|+.+.. .+..+.+.+...+.+++.+++ |+.||...+..
T Consensus 74 ~~ea~~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~--iI~SsTsgi~~ 121 (495)
T PRK07531 74 LAEAVAGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA--LIGSSTSGFLP 121 (495)
T ss_pred HHHHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCH
Confidence 6678999999998742 124455555556777654554 45777766543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.2e-05 Score=69.68 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--------------cceEEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--------------~~~v~i 162 (398)
|||+||| .|.||..+|..|+..|. .+. +.|+|+++.+.. +....++ ..+.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~----g~D~~~~~v~~l----~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVI----GVDIDEEKVEAL----NNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEE----EE-S-HHHHHHH----HTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEE----EEeCChHHHHHH----hhccccccccchhhhhccccccccchh
Confidence 6999999 69999999999999985 232 246776765533 2222111 135677
Q ss_pred ecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCchhHH
Q 015897 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNA 229 (398)
Q Consensus 163 ~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t 229 (398)
+++..+++++||++|++.+.|..++.+ .| ...+....+.|.++..++..||+=| =|..+.-
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~-~D-----ls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS-PD-----LSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS-BE-----THHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred hhhhhhhhhccceEEEecCCCccccCC-cc-----HHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 777778899999999998877544211 11 2233444444444444555544433 3444433
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=71.42 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=54.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH--------HHhhhcC--CCcceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLF--PLLREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~--------DL~d~~~--~~~~~v~i~~~~ 166 (398)
|||+|+| +|-||-..+-.|+..|. ++. ++ |+++++.+..-. .|++... ...++.+.|++-
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv--~v--Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~ 70 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVV--CV--DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDY 70 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEE--EE--eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCH
Confidence 6999999 69999999999998874 343 23 555566542211 0111110 111347888888
Q ss_pred ccccCCCcEEEEeCCCCCCC
Q 015897 167 YELFEDAEWALLIGAKPRGP 186 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~ 186 (398)
.++++++|+++++.|.|.++
T Consensus 71 ~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHhcCCEEEEEcCCCCCC
Confidence 88999999999999988665
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00044 Score=69.39 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=74.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CC----CcceEEEecCccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP----LLREVKIGINPYE 168 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~----~~~~v~i~~~~~e 168 (398)
++++||+|+|| |.+|..++..|...+. +.+ + .++++..+..-.+-.... .+ +..++..+++..+
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l--~--~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~ 73 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRGP------TLQ--W--VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE 73 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCCC------EEE--E--eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH
Confidence 56789999995 9999999999998762 333 2 244444432222100000 01 1123556666677
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-----HHHHHHHHC
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-----NALICLKNA 236 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-----~t~~~~k~~ 236 (398)
+++++|+||++.. .+.++++.+.+..+..++..+|.++|-.+. +..++.+..
T Consensus 74 a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l 130 (341)
T PRK12439 74 AANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVL 130 (341)
T ss_pred HHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHc
Confidence 8999999999853 346667777777665677889999998764 455665554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00027 Score=69.60 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC----CCcceEEEecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~eal~ 171 (398)
|+||+|||+ |.+|..++..|+..+. ++.+ + |++++.++....+..+... .....+....+..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTL--W--ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 3543 3 5666665544432111110 00112444455556888
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++|+||++... ..+.++.+.+..+..++.++|..+|-.+
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999998531 2234444455554457788888887655
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0004 Score=68.56 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH-------HHhhhcC-------CCcceEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSLF-------PLLREVK 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~-------DL~d~~~-------~~~~~v~ 161 (398)
++||+||| +|.+|..++..|+..|. +|.+ + |++++.++.... .+.+... .....++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-----~V~v--~--d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-----EVRL--W--DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-----eeEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 46899999 59999999999999875 3544 3 666555443211 1111110 0112355
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
.+++..+++++||+|+.+... +..+.+.+...+.+...++.++ .||-.....
T Consensus 72 ~~~~~~~a~~~ad~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~ii--~ssts~~~~ 123 (308)
T PRK06129 72 VTDSLADAVADADYVQESAPE--------------NLELKRALFAELDALAPPHAIL--ASSTSALLA 123 (308)
T ss_pred EECcHHHhhCCCCEEEECCcC--------------CHHHHHHHHHHHHHhCCCcceE--EEeCCCCCH
Confidence 666666788999999987521 1334444555566653334333 466544433
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00047 Score=73.40 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=70.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC---C--CcceEE-----Ee
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF---P--LLREVK-----IG 163 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~---~--~~~~v~-----i~ 163 (398)
++.+.|.|+||+|++|.+++..|+..|. .|.+ ++++.++++....++.+... . ...++. +.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vva----l~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRA----GVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3446899999999999999999998874 2443 25666666655544432100 0 000111 11
Q ss_pred c--CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 164 I--NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 164 ~--~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
. +..+++.++|+||.++|.......+-...+..|..-...+.+.+.+. + -+.||+++
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-g-VgRIV~VS 207 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-K-VNHFILVT 207 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-C-CCEEEEEc
Confidence 1 12346789999999887653322222233556666777778777764 2 34566555
|
|
| >PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases | Back alignment and domain information |
|---|
Probab=97.60 E-value=9e-05 Score=70.34 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCC
Q 015897 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNL 395 (398)
Q Consensus 335 A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L 395 (398)
+..++++|. +|++.++.+||.++|..-++|+|.++++||+|+++|++|..+.+||.
T Consensus 139 a~~~i~~i~-----~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~g~lP~ 194 (232)
T PF11975_consen 139 AEAAIEAIY-----NDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAVGPLPP 194 (232)
T ss_dssp HHHHHHHHH-----HSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-SB---H
T ss_pred HHHHHHHHh-----cCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccCCCCCH
Confidence 445555553 68999999999999998999999999999999999999888888773
|
It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00028 Score=63.14 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+||| .|.+|+.++..|+..+. ++.. | |++.++++....+ . .....+..+.+++||+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~--~--d~~~~~~~~~~~~----g------~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTV--Y--DRSPEKAEALAEA----G------AEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEE--E--ESSHHHHHHHHHT----T------EEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEe--e--ccchhhhhhhHHh----h------hhhhhhhhhHhhcccc
Confidence 68999999 69999999999998875 3443 4 6776666544322 1 4455678899999999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
||++-
T Consensus 61 vi~~v 65 (163)
T PF03446_consen 61 VILCV 65 (163)
T ss_dssp EEE-S
T ss_pred eEeec
Confidence 99874
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00079 Score=65.25 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|++|..++..|...+.+.. +.+.+ .|++.++++....++ + .+.+..+..+.++++|+|
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~~~~~-----~---g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHIKERY-----P---GIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHHHHHc-----C---CeEEECCHHHHHHhCCEE
Confidence 4799999 59999999999998874321 12443 367766654333211 1 234445666778999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|++.. -..+.++.+.+..+..++.+||.++|++.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 99852 13344555555544346778999999764
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=65.85 Aligned_cols=115 Identities=15% Similarity=0.243 Sum_probs=71.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc----CCCcceEEEecCccccc-C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF-E 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~eal-~ 171 (398)
|||+|||| |.+|+.++..|...+. +|.+ + +++++.++....+-.+.. ..+...+..+++..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l--~--~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNL--W--GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 48999995 9999999999998873 3654 3 566555543333210111 01112455666666666 5
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHH-hcCCCeEEEEECCCchh-----HHHHHHHHCC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCNT-----NALICLKNAP 237 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~-~a~p~a~vIvvtNP~d~-----~t~~~~k~~~ 237 (398)
++|+||++.. ..-+.++.+.+.. +..++..||..+|=.+. ...++.+..|
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~ 126 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILP 126 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcC
Confidence 8999999853 2445566666665 43567788888888743 2445555543
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=65.33 Aligned_cols=124 Identities=12% Similarity=0.032 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc----ceEEEecCccccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPYELF 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~----~~v~i~~~~~eal 170 (398)
..++|+|+||+|+||++++..|+++|. .|.- .+ .|...++-..+..+|+... ..+ .++.-...-.+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-----~V~g-tV-R~~~~~k~~~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-----TVRG-TV-RDPEDEKKTEHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-----EEEE-EE-cCcchhhhHHHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 457999999999999999999999997 2321 12 2332233333566666433 212 1222222346889
Q ss_pred CCCcEEEEeCCCCCCCCC-chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 171 ~dADiViitag~~rk~g~-~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
++||.|+.+|...--... ...++++-.++-...+.+.+.+. +..+=+|+|.-+..+
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS~aAv 133 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSSTAAV 133 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEeccHHHh
Confidence 999999999864321122 24467888888899999999996 367777788765543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=66.09 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc----CCCcceEEEecCccccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~eal 170 (398)
.+|||+|||+ |.+|..++..|+..+. +|.+ + ++++++++.....-.... .....++..+.+..+++
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~--~--~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASKGV-----PVRL--W--ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 3679999995 9999999999998874 3544 3 566665554432211100 01111244555666788
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+++|+||++.... .++++. +.. .++.++|.++|..+
T Consensus 73 ~~aD~Vi~~v~~~----------------~~~~v~---~~l-~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 73 AGADFAVVAVPSK----------------ALRETL---AGL-PRALGYVSCAKGLA 108 (328)
T ss_pred cCCCEEEEECchH----------------HHHHHH---Hhc-CcCCEEEEEeeccc
Confidence 9999999874311 123333 222 46778888888643
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=60.95 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+.+||+||| +|++|.+++..|+..+.... +.+. .++ +.+.++++....++ .+..+.+..+.++++|
T Consensus 3 ~~~kI~iIG-~G~mg~ala~~l~~~~~~~~-~~i~--~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIG-AGRMAEAIFSGLLKTSKEYI-EEII--VSN-RSNVEKLDQLQARY---------NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCCCc-CeEE--EEC-CCCHHHHHHHHHHc---------CcEEeCChHHHHhcCC
Confidence 457999999 59999999999987763221 1132 221 22445554333221 1234456667789999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+||++.. -+..+++.+.+..+- ++..||.++.-.+.
T Consensus 69 iViiavp----------------~~~~~~v~~~l~~~~-~~~~vis~~~gi~~ 104 (245)
T PRK07634 69 TIVLAMP----------------PSAHEELLAELSPLL-SNQLVVTVAAGIGP 104 (245)
T ss_pred EEEEecC----------------HHHHHHHHHHHHhhc-cCCEEEEECCCCCH
Confidence 9999843 133455555555432 34466666665543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=66.01 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||||+|.+|..++..|...|. .+.+ + |++.+.+...+.++ . +....+..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v--~--~r~~~~~~~~a~~~-----g----v~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIV--T--GRDPKKGKEVAKEL-----G----VEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEE--E--ECChHHHHHHHHHc-----C----CeeccCHHHHhccCCEE
Confidence 5899998679999999999988774 2443 3 56655544333332 1 22344566788999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|++... ..+.++.+.+..+..++++|+.++.
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 998531 2223333444443346777777775
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=67.22 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=50.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC---------C-cceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------L-LREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~---------~-~~~v~i~~~~ 166 (398)
|||+||| +|.+|..++..|+..|. .|.. + |++.++++...........+ . ...++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~--~--d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTG--V--DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEE--E--ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 4899999 59999999999998875 2433 3 66666655333210000000 0 1225555555
Q ss_pred ccccCCCcEEEEeCCCCC
Q 015897 167 YELFEDAEWALLIGAKPR 184 (398)
Q Consensus 167 ~eal~dADiViitag~~r 184 (398)
.+++++||+||++...|.
T Consensus 71 ~~~~~~advvii~vpt~~ 88 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPL 88 (411)
T ss_pred HHHHhhCCEEEEEeCCCC
Confidence 678999999999987664
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=65.65 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCC---CceEEEeccccc---chhhHHHHHHHHhhhcC----CCcceEEEecCcc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPD---QPIALKLLGSER---SLQALEGVAMELEDSLF----PLLREVKIGINPY 167 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~---~~i~L~L~d~D~---~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~ 167 (398)
||+|||| |+.|.++|..|+.++....+ ++|.| +..+. +++..+..-.+.+...+ .+..+++.+++..
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l--w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM--WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE--EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHH
Confidence 6999995 99999999999987732221 35665 33321 22222222211111110 1123567777778
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+++++||+||++.- .+.++++++.+..+-.++..+|.++
T Consensus 78 eal~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 78 EAAKGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HHHhcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 89999999998742 4677777777776544555666665
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=57.41 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
..+||+|||| |+||.+|+..|...+. .|.- ++ .++.+..+..+..+. ...+ .+..+.+.+||
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~-v~--srs~~sa~~a~~~~~--------~~~~-~~~~~~~~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH-----EVVG-VY--SRSPASAERAAAFIG--------AGAI-LDLEEILRDAD 70 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS-----EEEE-ES--SCHH-HHHHHHC--T--------T------TTGGGCC-S
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE-EE--eCCcccccccccccc--------cccc-cccccccccCC
Confidence 3579999995 9999999999998875 2432 23 344433332222111 1222 34678899999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
++|++... ..+.++++.|..+
T Consensus 71 lv~iavpD----------------daI~~va~~La~~ 91 (127)
T PF10727_consen 71 LVFIAVPD----------------DAIAEVAEQLAQY 91 (127)
T ss_dssp EEEE-S-C----------------CHHHHHHHHHHCC
T ss_pred EEEEEech----------------HHHHHHHHHHHHh
Confidence 99998532 2566777777764
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=61.95 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| .|++|..++..|+..+...+ ..|. .+ .|++.++++. +.+. .+.+..+..+.++++|+|
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~-~~i~--v~-~~r~~~~~~~----~~~~------g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP-SRIS--TA-DDSNPARRDV----FQSL------GVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc-ceEE--EE-eCCCHHHHHH----HHHc------CCEEeCChHHHHhcCCEE
Confidence 5899999 59999999999998875332 1233 23 1566665432 2211 123445666778999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|++. .| +.+.++.+.+.....++..||..++...
T Consensus 66 il~v-~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 66 ILAV-KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred EEEE-Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 9986 22 3444555555444346677776666543
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0023 Score=64.98 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=67.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCc----CCCCCceEEEecccccchh-hHHHHHHHHhhhc--C------CCcce
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQ-ALEGVAMELEDSL--F------PLLRE 159 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~----~~~~~~i~L~L~d~D~~~~-~l~g~a~DL~d~~--~------~~~~~ 159 (398)
..+.+||+|||| |.-|+++|..|..++. |+ ++|.|.. .| ++ .-+..+.++++.. . .+..+
T Consensus 8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~--~~V~lw~--~~--~~~~~~~~~~~in~~~~N~~ylp~~~Lp~n 80 (365)
T PTZ00345 8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFH--NEVRMWV--LE--EIVEGEKLSDIINTKHENVKYLPGIKLPDN 80 (365)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCC--CeEEEEE--ec--ccccchHHHHHHHhcCCCcccCCCCcCCCc
Confidence 455689999995 9999999999998763 22 2466532 22 22 1112344444321 1 12246
Q ss_pred EEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHH--hcCCCeEEEEEC
Q 015897 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA--VASRNVKVIVVG 222 (398)
Q Consensus 160 v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~--~a~p~a~vIvvt 222 (398)
+..++|..+++++||+||++.- .+.++++++.++. +..++..+|.++
T Consensus 81 i~~tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 81 IVAVSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred eEEecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 7777777889999999988742 3677788888876 423455565554
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0025 Score=62.03 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| +|++|.+++..|+..+.+..+ .|.. .|++.++++....++ + +.+..+..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~-~I~v----~~r~~~~~~~l~~~~-----g----~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPD-QIIC----SDLNVSNLKNASDKY-----G----ITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCc-eEEE----ECCCHHHHHHHHHhc-----C----cEEeCCcHHHHhhCCEE
Confidence 4899999 599999999999988854321 2432 467766655333211 1 23445666778999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|++.. | +.+.++.+.+..+..++.+||-+.--++
T Consensus 68 iLavk-P---------------~~~~~vl~~l~~~~~~~~lvISi~AGi~ 101 (272)
T PRK12491 68 ILSIK-P---------------DLYSSVINQIKDQIKNDVIVVTIAAGKS 101 (272)
T ss_pred EEEeC-h---------------HHHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence 98853 1 3445555555554345667766665543
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0026 Score=66.04 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=69.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC-cccccC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFE 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~-~~eal~ 171 (398)
++.|||.|+||+|+||++++..|+..|. .|.. + |+...........+. .. ..+.+. .| ..+.+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~--l--dr~~~~~~~~~~~~~----~~-~~~~~~~~Di~~~~~~ 183 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIV--I--DNFFTGRKENLVHLF----GN-PRFELIRHDVVEPILL 183 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--E--eCCCCccHhHhhhhc----cC-CceEEEECcccccccc
Confidence 4568999999999999999999998874 2432 2 322111010111111 00 012111 11 234577
Q ss_pred CCcEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 dADiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++|+||.+++... ....+..+.+..|+.-...+.+.+++. + ..+|.++.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g--~r~V~~SS 234 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--ARFLLTST 234 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECc
Confidence 8999999987532 122345677889999999999999885 3 46666654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=67.70 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH--------hhhcCC-CcceEEEecCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL--------EDSLFP-LLREVKIGINP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL--------~d~~~~-~~~~v~i~~~~ 166 (398)
||||+||| +|.||..++-.|+..|. + ..+. . +|+++++++..-... ++.... ..+..+.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g--~~V~--g--vD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D--IEVV--V--VDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CeEE--E--EECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 57999999 59999999999998753 1 0233 2 366767765432211 110000 11236677777
Q ss_pred ccccCCCcEEEEeCCCCCCC-C---CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEE-EECCCchh
Q 015897 167 YELFEDAEWALLIGAKPRGP-G---MERAGLLDINGQIFAEQGKALNAVASRNVKVI-VVGNPCNT 227 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~-g---~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vI-vvtNP~d~ 227 (398)
.+++++||++|++.+.|..+ | .... +..-+.+.++.|.++..++.+|| =-|-|..+
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~-----Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCC-----cHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 78899999999999888543 2 1122 23345555555555532333322 22556554
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=63.92 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH-HhhhcCCCcc---eEEEecCcccccCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLR---EVKIGINPYELFED 172 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D-L~d~~~~~~~---~v~i~~~~~eal~d 172 (398)
|||+|+|+ |.+|..++..|...+. .|.+ + ++ +++++....+ +. ....... .....++..+..++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~--~--~r-~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTF--L--VR-PKRAKALRERGLV-IRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEE--E--ec-HHHHHHHHhCCeE-EEeCCCeEEecceeecCHHHccCC
Confidence 58999995 9999999999998764 3554 2 45 4554433211 00 0000000 11122333444589
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
+|+||++...+ -..++.+.+..+..++..||.+.|..+....
T Consensus 69 ~d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~ 110 (305)
T PRK12921 69 FDLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ 110 (305)
T ss_pred CCEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH
Confidence 99999985321 2334444555543567888889999865443
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0023 Score=61.52 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+|||+ |.+|..++..|...+... ..+.+ .|++.+.++.....+ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~--~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPA--KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCc--ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 578999995 999999999998876411 12333 367766654333221 12234455667889999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
||++.. ...+.++.+.+..+ . +..||.++|-..
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~-~-~~~vvs~~~gi~ 98 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQ-L-DKLVVSIAAGVT 98 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhh-c-CCEEEEecCCCC
Confidence 999852 24566666666654 2 567777777654
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=64.35 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=77.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh--cCCCc------ceEEEecCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFPLL------REVKIGINPY 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~--~~~~~------~~v~i~~~~~ 167 (398)
++||+|+|| |.=|++||..|+.++. ++.| . .++++.. .||... ...++ ..+..++|..
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~l--w--~r~~~~~----~~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRL--W--GRDEEIV----AEINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEE--E--ecCHHHH----HHHHhcCcCccccCCccCCcccccccCHH
Confidence 579999995 9999999999999883 4655 3 3444433 333332 21122 3566778899
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC-----CchhHHHHHHHHCC
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNAP 237 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-----P~d~~t~~~~k~~~ 237 (398)
+++++||+|++..- .+.+++++++++.+-.++.+++.++. ....++.++.+..|
T Consensus 67 ~a~~~ad~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 67 EALDGADIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred HHHhcCCEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 99999999999742 46778888888655457888888773 44567777777654
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=55.24 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=56.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
||+|+||+|.+|..++..|....-+. +. .++.... ..+.+. +..... ....+..+...+.+.+.++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~~-~~~~~~~~~g~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----LV-ALVSSSRSAGKPLS----EVFPHP-KGFEDLSVEDADPEELSDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----EE-EEEESTTTTTSBHH----HTTGGG-TTTEEEBEEETSGHHHTTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----EE-EeeeeccccCCeee----hhcccc-ccccceeEeecchhHhhcCCEE
Confidence 79999999999999999998855432 22 2232221 011111 111101 1112444544678888999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|++.+ .....++++.+.+ .+.+||-.|
T Consensus 71 f~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s 97 (121)
T PF01118_consen 71 FLALP----------------HGASKELAPKLLK---AGIKVIDLS 97 (121)
T ss_dssp EE-SC----------------HHHHHHHHHHHHH---TTSEEEESS
T ss_pred EecCc----------------hhHHHHHHHHHhh---CCcEEEeCC
Confidence 99864 3456666666644 456665554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0027 Score=65.01 Aligned_cols=76 Identities=11% Similarity=0.139 Sum_probs=47.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC--------CcceEEEecCccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--------LLREVKIGINPYE 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~--------~~~~v~i~~~~~e 168 (398)
|||+||| +|.||..++..++. |. ++.. .|+++++++..........-+ ....++.+++..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vig----vD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVA----LDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEE----EECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 4899999 59999999977764 52 2443 367777765443211110000 1123444455678
Q ss_pred ccCCCcEEEEeCCCC
Q 015897 169 LFEDAEWALLIGAKP 183 (398)
Q Consensus 169 al~dADiViitag~~ 183 (398)
+.++||+||++...|
T Consensus 70 ~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 70 AYRDADYVIIATPTD 84 (388)
T ss_pred hhcCCCEEEEeCCCC
Confidence 889999999987655
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=62.74 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEE---EecCcccccCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVK---IGINPYELFED 172 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~---i~~~~~eal~d 172 (398)
|||+|+|| |.+|..++..|...|. +|.+ ++++.+.++....+ .. .. ..... ...++.++.++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTL----VARRGAHLDALNEN---GL-RLEDGEITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECChHHHHHHHHc---CC-cccCCceeecccCCCChhHcCC
Confidence 58999995 9999999999998763 3654 25554554433221 11 11 11111 11233444599
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
+|+||++.... -..++.+.+..+-.++..||...|.++....
T Consensus 67 ~d~vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 67 QDLVILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCEEEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 99999985321 1233444444433467889999999775543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=62.28 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| .|.+|..++..|...+. .|.+ .|++++.++. +.+.. . +.....+.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~----~d~~~~~~~~-a~~~g--~------~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYG----VSRRESTCER-AIERG--L------VDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHH-HHHCC--C------cccccCCHhHhcCCCEE
Confidence 4899999 59999999999988764 2443 3666655542 22211 0 11123345678999999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
|++..
T Consensus 62 ilavp 66 (279)
T PRK07417 62 ILALP 66 (279)
T ss_pred EEcCC
Confidence 99853
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0065 Score=58.90 Aligned_cols=116 Identities=20% Similarity=0.106 Sum_probs=77.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC-------
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------- 165 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------- 165 (398)
+++.++.|+||++.||..+|..|+.+|. .+.| +.+++++|+..+.+|++.. .. ++.+. .|
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~v--~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-GV--EVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-Cc--eEEEEECcCCChhHH
Confidence 3456899999999999999999999986 3444 4799999999999999743 21 22211 11
Q ss_pred ------cccccCCCcEEEEeCCCCCCC------CCchhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 ------PYELFEDAEWALLIGAKPRGP------GMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ------~~eal~dADiViitag~~rk~------g~~r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..+..-+.|+.|..+|...-. ..+-.+++.-|+- +.+.+.+.+.+. ..|-|||++-
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~--~~G~IiNI~S 143 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER--GAGHIINIGS 143 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 112223689999998875321 1234466666654 445555666663 4577777763
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0014 Score=66.28 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=72.8
Q ss_pred CcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh
Q 015897 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (398)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~ 152 (398)
|.||.+++-- ...++ .++.+.+||.|+||+|+||++++..|...|. .|.. +++..... . ...
T Consensus 1 ~~~~~~~~~~-~~~~~--~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~----v~r~~~~~---~---~~~ 62 (370)
T PLN02695 1 ESYGAYTLAE-LEREP--YWPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIA----SDWKKNEH---M---SED 62 (370)
T ss_pred CCccccchhh-cCCCC--CCCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEE----EEeccccc---c---ccc
Confidence 4677776632 22222 2455668999999999999999999998764 2432 23321110 0 000
Q ss_pred cCCCcceEE---Ee--cCcccccCCCcEEEEeCCCCCCCC---CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 153 LFPLLREVK---IG--INPYELFEDAEWALLIGAKPRGPG---MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 153 ~~~~~~~v~---i~--~~~~eal~dADiViitag~~rk~g---~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.....+. +. ....+.++++|+||.+++.....+ .........|......+.+.+.+. +.+ .+|.+|.
T Consensus 63 --~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 --MFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred --cccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0000111 11 112345678999999886431111 122335677888888898888875 333 4555553
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0032 Score=62.64 Aligned_cols=105 Identities=20% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC-C------cceEEEecCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L------LREVKIGINPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~-~------~~~v~i~~~~~e 168 (398)
|+||+|||+ |.+|..++..|...|. .|.+ + |+++ ..+....+-...... . ...+..+ .+.+
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~-----~V~~--~--~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA-----DVTL--I--GRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPA 69 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC-----cEEE--E--ecHH-HHHHHHhcCceeecCCCcceecccceeEec-cChh
Confidence 468999995 9999999999999874 3554 3 4432 222111100000000 0 0112233 3457
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
+++++|+||++...+. ..++.+.+.....++.+|+..+|..+..
T Consensus 70 ~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 8899999999864221 1233344555445778888889987643
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0042 Score=60.48 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
|+||+||| +|++|.+++..|...+.+.. +.+.+ + +++ +++++....+ . + .+.++.+..+.++++|
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~-~~V~~--~--~r~~~~~~~~l~~~----~-~---~~~~~~~~~e~~~~aD 66 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATP-EEIIL--Y--SSSKNEHFNQLYDK----Y-P---TVELADNEAEIFTKCD 66 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCc-ccEEE--E--eCCcHHHHHHHHHH----c-C---CeEEeCCHHHHHhhCC
Confidence 56899999 59999999999998874321 12433 3 333 2333222111 1 1 2334455667789999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+||++.. .+.+.++.+.+..+..++..||.+.|-++.
T Consensus 67 vVilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 67 HSFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred EEEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 9998853 234556666665543356678878776544
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0047 Score=62.96 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE--ecCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (398)
|+||.|||| |+||+.++..|++++. . .|.+ .|++.+++........... .. ..+.+ .....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~~~~~~v-~~-~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAELIGGKV-EA-LQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHhhccccc-ee-EEecccChHHHHHHHhcC
Confidence 679999996 9999999999999886 2 2655 4787666653432211000 00 11222 12346889999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHH---HHCCCCCCc-eEEec--
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL---KNAPSIPAK-NFHAL-- 247 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~---k~~~~~~~k-vig~g-- 247 (398)
|+||.++...- +. .+.+++-+ -+.-++-.+|-.+.. +.+. +.+ ++ . ++++|
T Consensus 70 d~VIn~~p~~~------------~~----~i~ka~i~---~gv~yvDts~~~~~~-~~~~~~a~~A-gi--t~v~~~G~d 126 (389)
T COG1748 70 DLVINAAPPFV------------DL----TILKACIK---TGVDYVDTSYYEEPP-WKLDEEAKKA-GI--TAVLGCGFD 126 (389)
T ss_pred CEEEEeCCchh------------hH----HHHHHHHH---hCCCEEEcccCCchh-hhhhHHHHHc-Ce--EEEcccCcC
Confidence 99999875431 22 33333333 245577777776663 3332 222 11 1 12222
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEe--ccCC
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWG--NHST 281 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G--~Hg~ 281 (398)
..++..-+.+ .++.+.-..++|+ +|+.| +||+
T Consensus 127 PGi~nv~a~~-a~~~~~~~i~si~-iy~g~~g~~~~ 160 (389)
T COG1748 127 PGITNVLAAY-AAKELFDEIESID-IYVGGLGEHGD 160 (389)
T ss_pred cchHHHHHHH-HHHHhhccccEEE-EEEecCCCCCC
Confidence 3334444444 4444443556666 34433 8883
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.003 Score=61.31 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||++||+ |++|..++..|+..+.... +.|.+ .+++++++...+.++ +. . .+++..++..++|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~-~~I~v----~~~~~e~~~~l~~~~-----g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPP-EEIIV----TNRSEEKRAALAAEY-----GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCc-ceEEE----eCCCHHHHHHHHHHc-----CC--c--ccCcHHHHHhhCCE
Confidence 579999995 9999999999999995442 12433 577777765333322 21 1 25566788999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
||++.. | +.+.++.+.++.. .++..||-+.=.+.
T Consensus 66 v~LavK----P------------q~~~~vl~~l~~~-~~~~lvISiaAGv~ 99 (266)
T COG0345 66 VFLAVK----P------------QDLEEVLSKLKPL-TKDKLVISIAAGVS 99 (266)
T ss_pred EEEEeC----h------------HhHHHHHHHhhcc-cCCCEEEEEeCCCC
Confidence 999863 2 5788888888863 46767776665543
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0058 Score=59.43 Aligned_cols=99 Identities=26% Similarity=0.228 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|||+||| +|++|.+++..|+..+.... +.+.+ .|++. ++++..+.++ .+.+..+..+..++||+
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~-~~v~v----~~r~~~~~~~~l~~~~---------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKG-EQITV----SNRSNETRLQELHQKY---------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCc-ceEEE----ECCCCHHHHHHHHHhc---------CceEeCCHHHHHhcCCE
Confidence 6999999 59999999999998874322 12332 35543 3444333221 12344556677899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
||++... +.+.++...+.....++.+||.+.+-+.
T Consensus 69 Vilav~p----------------~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 69 LFLAMKP----------------KDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred EEEEeCH----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9998531 2333344455443346677777655554
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=62.10 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADi 175 (398)
|||.|+||+|++|++++..|+..|. +|.. ..++.+.+. .+.+..... ..++.-.....++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~----l~R~~~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRC----LVRNLRKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EEcChHHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 5899999999999999999998874 2432 244433321 111111000 0011111123577899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+++... .+..+....|..-...+.+.+++. +-+ .+|.+|
T Consensus 68 Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred EEECCCCCC---CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 998765321 122234455666667777777774 333 455544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0091 Score=58.83 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| +|.+|..++..|...+... .|.+ .|++++.++. +.++ .. ...+..+..+.+++||+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~----~dr~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVG----ADRSAETRAR-AREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEE----EECCHHHHHH-HHhC-----CC--CceecCCHHHHhcCCCE
Confidence 36899999 5999999999998877421 2433 3666665442 2221 11 11123445677899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||++..
T Consensus 70 Viiavp 75 (307)
T PRK07502 70 VILCVP 75 (307)
T ss_pred EEECCC
Confidence 999864
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0055 Score=63.72 Aligned_cols=112 Identities=11% Similarity=0.124 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC-cccccCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-PYELFED 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~-~~eal~d 172 (398)
+.+||.|+||+|+||++++..|+..+. .|.. + |...........+ +.. . .++.+ ..| ...++.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~--l--d~~~~~~~~~~~~--~~~--~-~~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV--V--DNFFTGRKENVMH--HFS--N-PNFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE--E--eCCCccchhhhhh--hcc--C-CceEEEECCccChhhcC
Confidence 457999999999999999999999874 2432 2 3221111111111 100 0 01221 112 2345678
Q ss_pred CcEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 173 ADiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+|+||.+++... ....+..+.+..|+.....+.+.+++. + .++|.++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999999987532 112244567889999999999888875 2 46766664
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0031 Score=62.45 Aligned_cols=118 Identities=10% Similarity=0.070 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dAD 174 (398)
.++|.|+||+|++|++++..|+..+-.. .|.+ + +++.........++......+ ..++.-.....+++++.|
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~---~V~~--~--~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD 76 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPK---KIII--Y--SRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVD 76 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCc---EEEE--E--cCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCC
Confidence 4689999999999999999999875211 2432 2 444333332222222100000 011111111245677899
Q ss_pred EEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.++|....+ ..+..+.+..|+.-...+.+.+.+. + -+.+|.+|
T Consensus 77 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~-~~~iV~~S 124 (324)
T TIGR03589 77 YVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-G-VKRVVALS 124 (324)
T ss_pred EEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEEe
Confidence 999988764322 2244567889998888888888874 3 34566665
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0096 Score=58.41 Aligned_cols=88 Identities=7% Similarity=0.023 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.|||.|+||+|++|++++..|+..|. ++.+ ...|. ...+....|+.+ .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~--~~~~~--~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHY--GSGRL--ENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEE--ecCcc--CCHHHHHHHHHh-------------------cCCCE
Confidence 36899999999999999999998774 2432 11122 112222223221 15799
Q ss_pred EEEeCCCCCCCC-----CchhhhHHHHHHHHHHHHHHHHHh
Q 015897 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 176 Viitag~~rk~g-----~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
||.+++....+. ....+.+..|......+++.+++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887643222 234567888998888999888885
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0059 Score=62.99 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC----------CcceEEEecC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~----------~~~~v~i~~~ 165 (398)
++||+||| .|.+|..+|..|+..|. ++.. .|+++++++.......+...+ .......++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~----~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIG----VDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 57999999 59999999999999874 2433 367777766422110000000 001222322
Q ss_pred cccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCchh
Q 015897 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~ 227 (398)
++++||+||++...|..+.. .. +...+.+..+.|.++..++.+||+-| -|...
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~~-----dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-EP-----DLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-Cc-----ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 24589999999877643211 11 12233344444545434555554443 35443
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0023 Score=64.77 Aligned_cols=114 Identities=17% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-CCcceEEEec-------Cc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGI-------NP 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-~~~~~v~i~~-------~~ 166 (398)
++|||.|+||+|+||++++..|+..+-. .|.. + |++.++.. .+..... ....++++.. ..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~--l--~r~~~~~~----~l~~~~~~~~~~~~~~~~~Dl~d~~~l 80 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA--L--DVYNDKIK----HLLEPDTVPWSGRIQFHRINIKHDSRL 80 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE--E--ecCchhhh----hhhccccccCCCCeEEEEcCCCChHHH
Confidence 3579999999999999999999987411 2332 2 44433322 1111000 0001122111 12
Q ss_pred ccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.++++++|+||.+++..... ..+..+.+..|+.-...+.+..++. . ..+|.+|.
T Consensus 81 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 81 EGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 45677899999998753211 1122345566766666667766653 2 46666664
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0058 Score=60.88 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-----Ee--cCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~e 168 (398)
.++|.|+||+|+||++++..|+..|. .|.+ + +++.+.+.... ++.... .....+. +. ....+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRA--T--VRDPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEE--E--EcCcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 45899999999999999999998864 2433 1 23333332221 221100 0000111 11 11235
Q ss_pred ccCCCcEEEEeCCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~-r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-.++|.+|
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~r~v~~S 127 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKA-KTVRRIVFTS 127 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 677899999988643211112 2356778888888888888774 2224566655
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=62.61 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=71.4
Q ss_pred EEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC--CCcceEEEecCcccccCCCcEEEE
Q 015897 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (398)
Q Consensus 101 IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~dADiVii 178 (398)
|+||+|++|++++..|+..+-.. .|. .+|.......+. ++.+... .+..+++-..+..++++++|+||.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~---~Vr--~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIY---EVR--VLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCce---EEE--Ecccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 89999999999999999988421 233 333322221111 1121110 011233223345689999999999
Q ss_pred eCCCCCCCC-CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 179 tag~~rk~g-~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
++..-.-.+ ..+..+...|+.=.+.+.+...+. +.+-+|+|.-+++
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~~v 119 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSISV 119 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCcce
Confidence 987533333 356678889999999999888874 5555556655554
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0061 Score=60.34 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec------Cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~e 168 (398)
++||.|+||+|++|++++..|+..|. .|.+ +..|. +..... .++.... .. .++.+ .. ...+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~--~~r~~--~~~~~~-~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNT--TVRDP--ENQKKI-AHLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEE--EECCC--CCHHHH-HHHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 56899999999999999999998874 2432 11222 221111 1111100 00 11111 11 1235
Q ss_pred ccCCCcEEEEeCCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~-r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.++++|+||.+++.......+ ..++...|+.-...+.+.+.+. ..-..+|.+|
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~-~~~~~~v~~S 130 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKA-KSVKRVILTS 130 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEee
Confidence 578899999988743211112 2345678999888898888775 2223555554
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0025 Score=57.05 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=60.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe----cCcccccCCCc
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELFEDAE 174 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~----~~~~eal~dAD 174 (398)
|.|+||+|++|+.++..|+..+. +|.. +-+++++++. . +....+... ....++++++|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~----~~R~~~~~~~--------~-~~~~~~~~d~~d~~~~~~al~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTA----LVRSPSKAED--------S-PGVEIIQGDLFDPDSVKAALKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEE----EESSGGGHHH--------C-TTEEEEESCTTCHHHHHHHHTTSS
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEE----EecCchhccc--------c-cccccceeeehhhhhhhhhhhhcc
Confidence 78999999999999999999983 3543 1356665553 1 111111111 12357889999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.||.+.|.+.+ ....++.+.+.+++. + -..++.+|
T Consensus 63 ~vi~~~~~~~~-----------~~~~~~~~~~a~~~~-~-~~~~v~~s 97 (183)
T PF13460_consen 63 AVIHAAGPPPK-----------DVDAAKNIIEAAKKA-G-VKRVVYLS 97 (183)
T ss_dssp EEEECCHSTTT-----------HHHHHHHHHHHHHHT-T-SSEEEEEE
T ss_pred hhhhhhhhhcc-----------ccccccccccccccc-c-cccceeee
Confidence 99999876543 167778888888874 3 23555554
|
... |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0059 Score=60.29 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| +|.+|.+++..|...|. +|.+ + +++.. .+..+++++||+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~-----~V~~--~--~r~~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH-----RVRV--W--SRRSG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-----EEEE--E--eCCCC-----------------------CCHHHHHhcCCE
Confidence 46899999 59999999999998875 3543 4 44321 234566789999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh-cCCCeEEEEECCC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP 224 (398)
||++.. ...++++.+.+..+ ..++.+++..++.
T Consensus 51 vi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 51 IVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred EEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 998842 13455555666542 2467888888873
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0094 Score=58.22 Aligned_cols=115 Identities=16% Similarity=0.025 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc--CCCc----ceEEEecCcccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL--FPLL----REVKIGINPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~--~~~~----~~v~i~~~~~ea 169 (398)
.+||.|+||+|+||++++..|+..|. .|.. + +++.+... ....+.... .+.. .++.-.....++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKA--T--VRDPNDPK-KTEHLLALDGAKERLHLFKANLLEEGSFDSV 73 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEE--E--EcCCCchh-hHHHHHhccCCCCceEEEeccccCcchHHHH
Confidence 36899999999999999999998875 2432 1 22222211 111111100 0000 111111123456
Q ss_pred cCCCcEEEEeCCCCCCC-CCchhhhHHHHHHHHHHHHHHHHHhcCCC-eEEEEEC
Q 015897 170 FEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVG 222 (398)
Q Consensus 170 l~dADiViitag~~rk~-g~~r~dll~~N~~i~~~i~~~i~~~a~p~-a~vIvvt 222 (398)
++++|+||.+++..... .....+.+..|+.-...+.+.+.+. .+ ..+|.+|
T Consensus 74 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~--~~~~~~v~~S 126 (322)
T PLN02662 74 VDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV--PSVKRVVVTS 126 (322)
T ss_pred HcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEEcc
Confidence 78999999988753211 1122356778888888888887764 22 2455544
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.011 Score=58.09 Aligned_cols=116 Identities=15% Similarity=0.009 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-----Ee--cCcc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPY 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~ 167 (398)
+.++|.|+||+|+||++++..|+..|. .|.+ . .++.+.++.. ..+.... ....++. ++ .+..
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~D~~d~~~~~ 72 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-----TINA--T--VRDPKDRKKT-DHLLALD-GAKERLKLFKADLLDEGSFE 72 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEE--E--EcCCcchhhH-HHHHhcc-CCCCceEEEeCCCCCchHHH
Confidence 346899999999999999999998875 2433 1 2222222211 1111100 0001111 11 1123
Q ss_pred cccCCCcEEEEeCCCCCCC-CC-chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 168 ELFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 168 eal~dADiViitag~~rk~-g~-~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+.+++.|+||.+++..... .. .-...+..|..-...+.+.+.+. ...+.||++|
T Consensus 73 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~-~~~~~iv~~S 128 (325)
T PLN02989 73 LAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKV-SSVKRVILTS 128 (325)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 4567899999998754211 11 22355778888888888887774 2234566555
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0057 Score=61.09 Aligned_cols=121 Identities=13% Similarity=0.014 Sum_probs=67.9
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC-CcceEEEec-C---
Q 015897 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGI-N--- 165 (398)
Q Consensus 91 ~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~-~~~~v~i~~-~--- 165 (398)
+...+++||.|+||+|++|++++..|+..+. .|.. + |+..........++...... ...++.+.. |
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~--~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQ-----TVIG--L--DNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--E--eCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 3333457999999999999999999998864 2322 2 33211111011111100000 001121111 1
Q ss_pred ---cccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ---PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ---~~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..+.++++|+||.+|+....+ ..+..+....|+.-...+.+.+++. +-. .+|.++
T Consensus 81 ~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 81 FTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 134478899999998754322 2334556788888888988888875 222 455554
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.017 Score=56.49 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH-HHHHHHhhhcCCCcceEEEecC-cccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~-~~eal~dA 173 (398)
++||+|+| .|.+|..++..|...+.. +.+ ++.|.+...++ +...++.|. .+.+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~i--~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VRI--IGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EEE--EeecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999998873 332 45666554433 111222211 1122 37888999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~ 236 (398)
|+||++.- +....++.+++.....++++|.=+|--=..+...+.++.
T Consensus 66 D~VivavP----------------i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 66 DLVIVAVP----------------IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred CEEEEecc----------------HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 99999853 233334444444322567777666544333344444443
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0038 Score=62.15 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CCCcceEEEecC---ccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGIN---PYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~---~~eal 170 (398)
||||.|+||+|++|++++..|+.. +. .|.. +|++.+... ++.... ..+ ....+..+ ..+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~----~~r~~~~~~----~~~~~~~~~~-~~~Dl~~~~~~~~~~~ 66 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG----MDMQTDRLG----DLVNHPRMHF-FEGDITINKEWIEYHV 66 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE----EeCcHHHHH----HhccCCCeEE-EeCCCCCCHHHHHHHH
Confidence 568999999999999999999875 32 2332 244433221 111100 000 00111111 12456
Q ss_pred CCCcEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+++|+||.+++... ....+.......|+.-...+.+.+.+. . ..+|.+|-
T Consensus 67 ~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 67 KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred cCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 89999999876532 122233445666777777888877774 2 46666654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=53.96 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c--Ccccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~ea--- 169 (398)
|++|.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++.... . .++.+. . .+++.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~ 68 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-----RLYL----AARDVERLERLADDLRARG-A--VAVSTHELDILDTASHAA 68 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CeEEEEecCCCChHHHHH
Confidence 46899999999999999999998874 2443 3566666666666654321 1 112111 1 11211
Q ss_pred -----cCCCcEEEEeCCCCC-C--CCCchh---hhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 -----FEDAEWALLIGAKPR-G--PGMERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 -----l~dADiViitag~~r-k--~g~~r~---dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+..|++|..+|... . ...+.. +.+..|..- .+.+.+.+.+. ..+.++++|-
T Consensus 69 ~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 135 (243)
T PRK07102 69 FLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEAR--GSGTIVGISS 135 (243)
T ss_pred HHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC--CCCEEEEEec
Confidence 123599998876532 1 122322 334555443 34444444442 3566666663
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.022 Score=56.15 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEec--CcccccC-
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI--NPYELFE- 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~--~~~eal~- 171 (398)
|||.|+||+|++|++++..|+..+. .|.+ + ++...........+.+..-... ....++. ...++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVI--L--DNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEE--E--ecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc
Confidence 5899999999999999999998764 2433 2 2211111111111221110000 0111111 0122343
Q ss_pred -CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 -DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 -dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++|+||.+++..... .....+.+..|+.....+.+.+.+. + -..+|.+|.
T Consensus 72 ~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~Ss 124 (338)
T PRK10675 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N-VKNLIFSSS 124 (338)
T ss_pred CCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEecc
Confidence 589999988754211 1234567888999899999888874 2 234555553
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=56.45 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=46.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|++|.+++..|...+.-. +.+.+ .+++.++++..+..+ + .+.+..+..+.++++|+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 4899999 5999999999999876411 12332 366666655443322 1 133445566678899999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
|++..
T Consensus 66 ilav~ 70 (258)
T PRK06476 66 FLAVR 70 (258)
T ss_pred EEEeC
Confidence 99854
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0097 Score=58.32 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..||.|+|| |.+|.++++.|+..+.- .|.+ .|++.+++++.+.++.+.. +. ..+....+.++.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999988752 2554 3788899999988886543 21 122111223567899999
Q ss_pred EEEe
Q 015897 176 ALLI 179 (398)
Q Consensus 176 Viit 179 (398)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9987
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0081 Score=59.89 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec--CcccccC-
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFE- 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~eal~- 171 (398)
.++|.|+||+|++|++++..|+..|. .|.. ++++..........+.... .. .....++. +..+.++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYG----YSLDPPTSPNLFELLNLAK-KIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEE----EeCCCccchhHHHHHhhcC-CceEEEccCCCHHHHHHHHhh
Confidence 46899999999999999999998874 2432 2444332221111111100 00 00011110 1123344
Q ss_pred -CCcEEEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 -DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 -dADiViitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.|+||.+++.+.. ...+-...+..|+.-...+.+.+.+. +....+|++|.
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 74 FKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred cCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 35999998875421 11233456778888888888888764 32346666664
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0088 Score=60.10 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.++|.|+||+|++|+.++..|+.. +. . .+.+ ++++++++...+.++.+.. + .+..+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv-~---~lil----v~R~~~rl~~La~el~~~~--------i-~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGV-A---ELLL----VARQQERLQELQAELGGGK--------I-LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCC-C---EEEE----EcCCHHHHHHHHHHhcccc--------H-HhHHHHHccCC
Confidence 469999999899999999999854 33 1 1433 3677777776666654211 1 13457899999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
+|+.+++.+...-.+..++ .+..++|-++-|=|+-
T Consensus 218 iVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred EEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCC
Confidence 9999887764211222111 2568888899997764
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.021 Score=59.22 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC----------cceEEEec
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~ 164 (398)
++|||+||| .|.||..++..|+. + + ++.. .|+++++++... ....++ ......+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~-~----~V~g----~D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-S-R----QVVG----FDVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-C-C----EEEE----EeCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 358999999 79999999998776 3 2 2432 367767665433 211111 0123333
Q ss_pred CcccccCCCcEEEEeCCCCC
Q 015897 165 NPYELFEDAEWALLIGAKPR 184 (398)
Q Consensus 165 ~~~eal~dADiViitag~~r 184 (398)
.+.+++++||++|++.+.|.
T Consensus 69 ~~~~~~~~advvii~Vptp~ 88 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPI 88 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCC
Confidence 45678999999999988774
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0086 Score=56.70 Aligned_cols=117 Identities=18% Similarity=0.099 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Ccccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~ea---- 169 (398)
|+++.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.... .....+.++. +..+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-----RVGA----YDINEAGLAALAAELGAGN-AWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhcCCc-eEEEEecCCCHHHHHHHHHHH
Confidence 45799999999999999999998874 2443 3566666655544443111 0001112211 01111
Q ss_pred ----cCCCcEEEEeCCCCCCCCC---c---hhhhHHHHHHHH----HHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 ----FEDAEWALLIGAKPRGPGM---E---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 ----l~dADiViitag~~rk~g~---~---r~dll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
....|+||.++|....... + -...+..|..-. +.+.+.+++ .+.+.+++++-.
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~iv~isS~ 137 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA--TPGARVINTSSA 137 (260)
T ss_pred HHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCCEEEEeCch
Confidence 3456999999886532211 1 123455665533 333444444 355677776643
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=55.45 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=79.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh-hcCCCcceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-SLFPLLREVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d-~~~~~~~~v~i~~---------~~ 166 (398)
+-+.|.||++.+|...+..|+..|. ++.| ..+++++|+..+.++.+ ...+. .+.++. ..
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~~~~~--~~DVtD~~~~~~~i~~~ 75 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGAALAL--ALDVTDRAAVEAAIEAL 75 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCceEEE--eeccCCHHHHHHHHHHH
Confidence 4578899999999999999999986 3544 48999999999999985 11111 222221 13
Q ss_pred ccccCCCcEEEEeCCCCCCCCC---c---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~---~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.+.|++|..+|.-+..-. + =..+++.|++ .++.+.+.+.+. ..|.|||++-
T Consensus 76 ~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~S 140 (246)
T COG4221 76 PEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGS 140 (246)
T ss_pred HHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEecc
Confidence 4678899999999887543111 1 2345777865 566677777774 5778988874
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=57.33 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH-HHHHHHhhhcCCC---cceEEEecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPL---LREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~-g~a~DL~d~~~~~---~~~v~i~~~~~eal~ 171 (398)
+++|.|+||+|++|++++..|+..|. .|.. + +++.+... ....++....... ..++.-.....++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-----TVKG--T--VRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE--E--eCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh
Confidence 56899999999999999999998874 2433 1 33323221 1111221110000 001111112246678
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|+||.+++... .+..+.+..|+.-...+.+.+.+. +.+ .+|.+|
T Consensus 81 ~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 81 GCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred cCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 9999999987532 234556778888888888888774 332 455544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.008 Score=58.67 Aligned_cols=63 Identities=10% Similarity=0.134 Sum_probs=44.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||+||| .|.+|..++..|+..|. +|.+ + |++.++++.. .+.. .....+..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~--~--dr~~~~~~~~----~~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHV--T--TIGPEVADEL----LAAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHCC------CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998774 3543 3 6776665432 2211 112345678899999999
Q ss_pred EeC
Q 015897 178 LIG 180 (398)
Q Consensus 178 ita 180 (398)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 985
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.015 Score=56.80 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=82.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c---C------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---N------ 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~---~------ 165 (398)
.+.|.|+||+..||.++|+.|+..|. .+++ .-+..++++-++.++.....+. ++.+. . +
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~-----~l~l----var~~rrl~~v~~~l~~~~~~~--~v~~~~~Dvs~~~~~~~ 80 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA-----KLVL----VARRARRLERVAEELRKLGSLE--KVLVLQLDVSDEESVKK 80 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-----ceEE----eehhhhhHHHHHHHHHHhCCcC--ccEEEeCccCCHHHHHH
Confidence 45889999999999999999999986 2333 2466778887778887765222 12211 1 1
Q ss_pred ----cccccCCCcEEEEeCCCCCCCCC-c------hhhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 166 ----PYELFEDAEWALLIGAKPRGPGM-E------RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 166 ----~~eal~dADiViitag~~rk~g~-~------r~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
...-+.+.|+.|..||..+ .+. + ....++.| +-+-+...+.+++. + +|.|++++....-++
T Consensus 81 ~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r-~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 81 FVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR-N-DGHIVVISSIAGKMP 156 (282)
T ss_pred HHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc-C-CCeEEEEeccccccC
Confidence 1246789999999999887 332 1 22345544 66788888999986 3 799999887765443
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0049 Score=59.01 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=61.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEE
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVii 178 (398)
|.|+||+|++|++++..|+..+. .|.. + +++.+....... ... ... ......++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTI--L--TRSPPAGANTKW---EGY----KPW-APLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEE--E--eCCCCCCCcccc---eee----ecc-cccchhhhcCCCCEEEE
Confidence 57999999999999999998764 2432 2 444333211100 000 001 11345678899999999
Q ss_pred eCCCCCCCC----CchhhhHHHHHHHHHHHHHHHHHh
Q 015897 179 IGAKPRGPG----MERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 179 tag~~rk~g----~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+++.+...+ .....+...|+.....+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 988754322 123456677888899999999885
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.035 Score=53.50 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=57.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| +|++|++++..|...+.+.. +.+.. .|++++++ .+....++.+.++++|+|
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~-~~i~~----~~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGK-ENIYY----HTPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCc-ceEEE----ECCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 6899999 59999999999998875442 12432 35544321 012334566778899999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|++.- .+.+.++.+.+..+- ++..||.+.+-+.
T Consensus 62 ilavk----------------p~~~~~vl~~i~~~l-~~~~iIS~~aGi~ 94 (260)
T PTZ00431 62 VLAVK----------------PDLAGKVLLEIKPYL-GSKLLISICGGLN 94 (260)
T ss_pred EEEeC----------------HHHHHHHHHHHHhhc-cCCEEEEEeCCcc
Confidence 98842 245566666666542 2345666666655
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0094 Score=51.73 Aligned_cols=76 Identities=22% Similarity=0.125 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..++.|+|| |.+|..+++.|...+.- .|.+ .+++.++++..+..+.... ....-..+..+.+.++|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~----~i~i----~nRt~~ra~~l~~~~~~~~----~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAK----EITI----VNRTPERAEALAEEFGGVN----IEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSS----EEEE----EESSHHHHHHHHHHHTGCS----EEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCC----EEEE----EECCHHHHHHHHHHcCccc----cceeeHHHHHHHHhhCC
Confidence 3579999995 99999999999998762 2554 4788888887777762111 12222334556788999
Q ss_pred EEEEeCCCC
Q 015897 175 WALLIGAKP 183 (398)
Q Consensus 175 iViitag~~ 183 (398)
+||.+.+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999986554
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.039 Score=55.04 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC------ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~~e 168 (398)
.+||.|+||+|+||++++..|+..|. .|.+ .+++.+.......++.. ..++.+. .| ..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~ 75 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-----TVHA----TLRDPAKSLHLLSKWKE-----GDRLRLFRADLQEEGSFDE 75 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHhhcc-----CCeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998874 2433 13343333322222221 0112211 11 234
Q ss_pred ccCCCcEEEEeCCCCCCC---C-Cchhh-----hHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 LFEDAEWALLIGAKPRGP---G-MERAG-----LLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 al~dADiViitag~~rk~---g-~~r~d-----ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++++.|+||.+++..... . .+..+ .+..|+.-...+.+.+.+. ..-.++|++|-
T Consensus 76 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~-~~~~~~v~~SS 138 (353)
T PLN02896 76 AVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS-KTVKRVVFTSS 138 (353)
T ss_pred HHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc-CCccEEEEEec
Confidence 567899999998764211 1 11122 2333445566666666653 21235665553
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.048 Score=53.49 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c------Cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~------~~~e 168 (398)
.++|.|+||+|+||++++..|+..|. .|.. +. ++.+..+ ....+.... ....++.+. . ...+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~-~~---r~~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-----TVKA-TV---RDLTDRK-KTEHLLALD-GAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE-EE---CCCcchH-HHHHHHhcc-CCCCceEEEecCCCCcchHHH
Confidence 36899999999999999999998874 2432 12 2222221 111111100 000112211 1 1235
Q ss_pred ccCCCcEEEEeCCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHhcCCC-eEEEEEC
Q 015897 169 LFEDAEWALLIGAKPRG-PGMERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVG 222 (398)
Q Consensus 169 al~dADiViitag~~rk-~g~~r~dll~~N~~i~~~i~~~i~~~a~p~-a~vIvvt 222 (398)
+++++|+||.+++.... ......+++..|+.-...+.+.+.+. ++ ..||.+|
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 74 AIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 57789999999875321 11122345677888888888777763 33 2455554
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.044 Score=54.29 Aligned_cols=118 Identities=13% Similarity=0.099 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c--Ccc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY---- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~---- 167 (398)
..+||.|+||+|++|++++..|+..+. .|.+ + ++...........+.+.......++... . .+.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~ 74 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-----KVVV--I--DNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALE 74 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--eCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHH
Confidence 356999999999999999999998763 2433 2 3211111111111111100000011111 1 122
Q ss_pred cccC--CCcEEEEeCCCCC-CCC-CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFE--DAEWALLIGAKPR-GPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~--dADiViitag~~r-k~g-~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.++ +.|+||.+++... .+. ......+..|......+.+.+.+. +. ..+|.+|.
T Consensus 75 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~Ss 132 (352)
T PLN02240 75 KVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GC-KKLVFSSS 132 (352)
T ss_pred HHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEcc
Confidence 2233 6899999887542 111 234456888888888888888764 22 34555553
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.041 Score=52.83 Aligned_cols=114 Identities=15% Similarity=-0.007 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Ccccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~ea--- 169 (398)
+++|.|+||+|.+|.+++..|+..|. .+.+ .|++.+.++....++.... .++.. .. .+++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~d~~~~~~ 72 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVL----ADVQQDALDRAVAELRAQG----AEVLGVRTDVSDAAQVEA 72 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHHhcC----CeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998874 2443 3666666666666654321 11211 11 12222
Q ss_pred -c-------CCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCC-----eEEEEECC
Q 015897 170 -F-------EDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRN-----VKVIVVGN 223 (398)
Q Consensus 170 -l-------~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~-----a~vIvvtN 223 (398)
+ ...|+||..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. +.+ +.+|+++-
T Consensus 73 ~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~~~~~g~iv~~sS 148 (287)
T PRK06194 73 LADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAA-AEKDPAYEGHIVNTAS 148 (287)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCCCCCCeEEEEeCC
Confidence 2 246999999886432 1 11111 22444443 444555556654 232 56666654
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0046 Score=60.77 Aligned_cols=122 Identities=21% Similarity=0.196 Sum_probs=71.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-C-C-------cceEEEecCcccc
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P-L-------LREVKIGINPYEL 169 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-~-~-------~~~v~i~~~~~ea 169 (398)
|.|+||+|++|+.++..|+..+. -.|+++ |+++..+....++|..... + . ..+++-.......
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------~~lil~--d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------KKLILF--DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------SEEEEE--ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------CeEEEe--CCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 67999999999999999998865 123344 7888888888888753220 1 1 1122111113466
Q ss_pred cC--CCcEEEEeCCCCCCCCC--chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCchhHH
Q 015897 170 FE--DAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV----GNPCNTNA 229 (398)
Q Consensus 170 l~--dADiViitag~~rk~g~--~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv----tNP~d~~t 229 (398)
++ +.|+|+.+|...--|=+ .-.+.+..|+-=-+.+++...++ +-+-.|.+- .||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCCcHHH
Confidence 77 99999999875433322 34567888887788888888886 455555554 46777653
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.04 Score=55.68 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=42.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
.||+||| .|.+|.+++..|...+. ++.+ ++.|.+...+. ..... ... -...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i--~~~~~~~~~~~---~a~~~---~~~--~~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFI--IGYDPSAAQLA---RALGF---GVI--DELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEE--EEeCCCHHHHH---HHhcC---CCC--cccccCHHHHhcCCCEE
Confidence 3799999 59999999999998875 2443 44454432221 11110 110 11234456778999999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9985
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.02 Score=60.15 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC---C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---d 172 (398)
|.+|+||| .|.+|..+|..|+..|. .|.+ + |++.++.+.......... ..+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v--~--dr~~~~~~~l~~~~~~~g----~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISV--Y--NRTYEKTEEFVKKAKEGN----TRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHhhhhcC----CcceecCCHHHHHhcCCC
Confidence 45899999 69999999999999885 3544 4 677777664443211101 12233344444444 5
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+|+|+++.-. .+.++++...+..+..++.+||..+|-.
T Consensus 67 ~d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 67 PRKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 8988776321 2455555556655546788999999853
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.046 Score=51.01 Aligned_cols=113 Identities=11% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c--Cccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++++.++....+++... .++.+. . .+.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-----TVAF----NDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQR 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 36899999999999999999998774 2443 2566676666666664321 111111 1 1222
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.|+||.++|.... + ..+.. ..+..|.. +.+.+.+.+.+. ..+.+|+++-
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS 143 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDS--GRGRIVNLAS 143 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEECc
Confidence 12578999998876432 1 11221 22344444 344444444442 4567777765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=55.66 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=69.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH--HhhhcCCCcceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--LEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D--L~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
|||+|+|| |.||..++..|...|. ++.+ +++..+.++..-.+ |.-........+.+...+.+.....|
T Consensus 3 m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~l----v~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGA-GSLGSLWACRLARAGL-----PVRL----ILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIH 72 (305)
T ss_pred ceEEEECC-CHHHHHHHHHHHhCCC-----CeEE----EEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccC
Confidence 68999995 9999999999998764 3665 35554455433221 10000000011112122234456889
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCc
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~ 249 (398)
+||++.... -..+..+.+..+.+++..|+.+-|=++....+. +..+. .+++++.+.
T Consensus 73 ~viv~vK~~----------------~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~~~~--~~v~~g~~~ 128 (305)
T PRK05708 73 RLLLACKAY----------------DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-ARVPH--ARCIFASST 128 (305)
T ss_pred EEEEECCHH----------------hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-HhCCC--CcEEEEEee
Confidence 999985311 122334445555468899999999987655443 33321 256655443
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=53.28 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||||+|.+|+.++.....+|. +..++ =+|..++... +... -...++---+...+++.+-|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-----vRn~~K~~~~----~~~~-i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-----VRNASKLAAR----QGVT-ILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-----EeChHhcccc----ccce-eecccccChhhhHhhhcCCceE
Confidence 6999999999999999999999986 22343 2555554321 1000 0111111112235889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|.+-|.+. ++.+ ..-.+-...+...++.. -...+++++.--
T Consensus 67 IsA~~~~~-~~~~-----~~~~k~~~~li~~l~~a--gv~RllVVGGAG 107 (211)
T COG2910 67 ISAFGAGA-SDND-----ELHSKSIEALIEALKGA--GVPRLLVVGGAG 107 (211)
T ss_pred EEeccCCC-CChh-----HHHHHHHHHHHHHHhhc--CCeeEEEEcCcc
Confidence 99866442 2211 11123355555556652 467888888653
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0086 Score=65.30 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=67.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CCCcceEEEecC---cc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGIN---PY 167 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~---~~ 167 (398)
.++++||.|+||+|+||++++..|+.. +. .|.. +|++..... ++.... ..+ ....++.. ..
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~----l~r~~~~~~----~~~~~~~~~~-~~gDl~d~~~~l~ 377 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG----LDIGSDAIS----RFLGHPRFHF-VEGDISIHSEWIE 377 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE----EeCCchhhh----hhcCCCceEE-EeccccCcHHHHH
Confidence 356789999999999999999999974 43 2332 244332211 111000 000 00111111 13
Q ss_pred cccCCCcEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~dADiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++++++|+||.+++... .......+....|+.-...+.+++.+. . ..+|.+|.
T Consensus 378 ~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 378 YHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 46789999999887542 222344567788888888888888885 3 35555554
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.017 Score=56.46 Aligned_cols=64 Identities=11% Similarity=0.215 Sum_probs=43.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| .|.+|..++..|+..+. ++.+ + |++.++++... .. .+....+..+.+++||+|
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~--~--d~~~~~~~~~~----~~------g~~~~~~~~e~~~~~d~v 62 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--Y--DRNPEAVAEVI----AA------GAETASTAKAVAEQCDVI 62 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHH----HC------CCeecCCHHHHHhcCCEE
Confidence 5899999 59999999999998764 2433 3 66666554322 11 122334456778999999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 63 i~~v 66 (296)
T PRK11559 63 ITML 66 (296)
T ss_pred EEeC
Confidence 9985
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.027 Score=55.01 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc--eEEEec--CcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIGI--NPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~--~v~i~~--~~~eal~ 171 (398)
.++|.|+||+|++|++++..|+..|. .|.+ ...+.+...+.....++.... .... ...++. ...++++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~--~~R~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-----TVHA--AVQKNGETEIEKEIRGLSCEE-ERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--EEcCchhhhHHHHHHhcccCC-CceEEEEecCCCHHHHHHHHc
Confidence 45899999999999999999999875 2433 111112222222222321100 0000 111111 1246788
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|.|+..++.+........+++..|+.-...+.+.+.+.. .-..||++|
T Consensus 78 ~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~riV~~S 127 (297)
T PLN02583 78 GCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD-TIEKVVFTS 127 (297)
T ss_pred CCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEec
Confidence 99998866543321111234567888888888888877641 123555554
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.034 Score=52.34 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++.+.. .++. +..| +.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-----AVAI----ADLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE----EeCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHH
Confidence 46899999999999999999998875 2443 3566666665666655422 1111 1111 111
Q ss_pred -------ccCCCcEEEEeCCCCCC-C----C-CchhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P----G-MERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~----g-~~r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|+||.++|.... + . .+-.+.+..|..- .+.+.+.+.+. ...+.+|+++-
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~~~~iv~~ss 144 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKD-DRGGVVIYMGS 144 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCCcEEEEEcc
Confidence 22358999998876421 1 1 1122334455443 56666666232 34566776663
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.021 Score=56.62 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=70.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch--hhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
|||+|+|| |.||+-++..|.+.+ . .+.+. -+++ +++...-..+.+.. ...........+.+.+..+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~----~R~~~~~~l~~~GL~i~~~~-~~~~~~~~~~~~~~~~~~~D 69 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLL----VRSRRLEALKKKGLRIEDEG-GNFTTPVVAATDAEALGPAD 69 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEE----ecHHHHHHHHhCCeEEecCC-CccccccccccChhhcCCCC
Confidence 69999995 999999999999988 2 24441 1222 22222222222222 10011223456778888999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~ 236 (398)
+||++... --..+..+.+..+..++.+|+..-|=....- .+.+..
T Consensus 70 lviv~vKa----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~ 114 (307)
T COG1893 70 LVIVTVKA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKIL 114 (307)
T ss_pred EEEEEecc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhC
Confidence 99998532 2344566666777678899999999887766 555544
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=56.55 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH---HHhhhcCCC-cceEEEecCccccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPL-LREVKIGINPYELF 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~---DL~d~~~~~-~~~v~i~~~~~eal 170 (398)
.++||+|+|+ |.||..++..|...+. ++.+ + .++. .+.... .+....... ...+... ...++.
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~--~--~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHF--L--LRSD--YEAVRENGLQVDSVHGDFHLPPVQAY-RSAEDM 70 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--E--EeCC--HHHHHhCCeEEEeCCCCeeecCceEE-cchhhc
Confidence 3579999995 9999999999998764 3554 2 3332 121111 000000000 0012222 234467
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecC
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALT 248 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt 248 (398)
..+|+||++..... ..+..+.+.....+++.|+...|=.+..-. +.++.|. .+++++.+
T Consensus 71 ~~~D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~-l~~~~~~--~~v~~g~~ 129 (313)
T PRK06249 71 PPCDWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQ-LREILPA--EHLLGGLC 129 (313)
T ss_pred CCCCEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHH-HHHHCCC--CcEEEEee
Confidence 88999999853221 123333444443578899999998764333 3344321 25555443
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.03 Score=54.46 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=60.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH-HHHHHhhhcCCCcceEEEecC-ccc-----ccC
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g-~a~DL~d~~~~~~~~v~i~~~-~~e-----al~ 171 (398)
|.|+||+|+||++++..|+..|. . .+.+ +|.......... ...|+.|.. . . .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~---~v~~--~~~~~~~~~~~~~~~~~~~d~~-~------~-~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-T---DILV--VDNLKDGTKFVNLVDLDIADYM-D------K-EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-c---eEEE--ecCCCcchHHHhhhhhhhhhhh-h------H-HHHHHHHhcccccC
Confidence 68999999999999999998774 1 1332 322111111000 111222111 0 0 00 111 224
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|+||.+++.+.....+.......|......+.+.+.+. +..+|.+|
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~---~~~~i~~S 115 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER---EIPFLYAS 115 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc---CCcEEEEc
Confidence 7899999887543223344456788888888888888774 23555554
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.01 Score=57.87 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (398)
+||.|+||+|++|++++..|+..+. .|.. ++++.+... ++.+.... .....+. ....+.++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~----~~~~~~~~-~~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRV----LVRPTSDRR----NLEGLDVE-IVEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEE----EEecCcccc----ccccCCce-EEEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998874 2432 244433321 11111000 0011111 12345677899
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||.+++.......+.......|+.-...+.+.+.+. + -..+|.++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-G-VERVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEEEec
Confidence 9999876432223345566778888888888888774 2 235555554
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.022 Score=56.41 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
..+||+|+|+ |.+|..++..|...+.. .|.+ .+++.++++..+.++.. .+....+.++.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~----~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVA----EITI----ANRTYERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 3579999995 99999999998875531 2444 37777777666665431 1211234567789999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
+||.+.+.+.. ..++... ++.....+.++|-+++|-|+=
T Consensus 241 vVi~at~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence 99998765531 1112221 222112467899999998853
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.01 Score=58.00 Aligned_cols=99 Identities=16% Similarity=0.056 Sum_probs=59.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (398)
|||.|+||+|++|++++..|+..+- +.. +|+.... ...|+.|.. ...+.++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~----~~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA----LDVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE----ecccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 4899999999999999999987651 322 1332111 011222111 1123344 589
Q ss_pred EEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.+++..... ..+.......|+.-...+++.+.+. +.++|.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~---g~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV---GAWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEc
Confidence 999988754211 1223344567888888999888875 24565555
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.096 Score=49.17 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
++|.|+||+|.+|++++..|+..|. .+.+ + ..++.+.++....++.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~-----~v~i-~--~~r~~~~~~~~~~~~~ 52 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA-----LVAI-H--YGRNKQAADETIREIE 52 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE-E--cCCCHHHHHHHHHHHH
Confidence 6899999999999999999998774 2433 1 2455555554554443
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.022 Score=53.66 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------PY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~~ 167 (398)
|+|.|+||+|.+|.+++..|+..|. .+.+ .+++++.++....++.... ......+.. + ..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIA----TGRRQERLQELKDELGDNL--YIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhccce--EEEEecCCCHHHHHHHHHHHH
Confidence 5799999999999999999998774 2443 3667666654443322100 000111110 0 11
Q ss_pred cccCCCcEEEEeCCCCC--CC--CCchh---hhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ELFEDAEWALLIGAKPR--GP--GMERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 eal~dADiViitag~~r--k~--g~~r~---dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.+.|+||..+|... .+ ..+.. +.+..|..- .+.+.+.+.+. ..+.+|++|-.
T Consensus 70 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 135 (248)
T PRK10538 70 AEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_pred HHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEECCc
Confidence 22347999999887532 12 11222 234555443 45555555542 34667777753
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.027 Score=55.29 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.... .+ ...++. + -
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~----~~R~~~~~~~~~~~l~~v~-~~--~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIV----PARRPDVAREALAGIDGVE-VV--MLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhhCe-EE--EccCCCHHHHHHHHHHH
Confidence 35899999999999999999999875 2443 3566666665555543211 00 111111 0 0
Q ss_pred ccccCCCcEEEEeCCCCCCCC-C--c-hhhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGPG-M--E-RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g-~--~-r~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|....+. . + -...+..| ..+.+.+.+.+.+. ..+.||+++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 122357899999988642221 1 1 11223444 33466666667663 3567777764
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.074 Score=49.29 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc---------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY--------- 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~--------- 167 (398)
++|.|+||+|.+|.+++..|+..|. .|.+ ++++.+.+.....++.+.. .. .-+..-..+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY-----KVAI----TARDQKELEEAAAELNNKG-NV-LGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----eeCCHHHHHHHHHHHhccC-cE-EEEEccCCCHHHHHHHHHH
Confidence 6899999999999999999998764 2433 3566666665555654321 10 0011101111
Q ss_pred --cccCCCcEEEEeCCCCCCC---CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 --ELFEDAEWALLIGAKPRGP---GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 --eal~dADiViitag~~rk~---g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|+||.++|..... ..+.. +.+..|+. +++.+.+.+. ...+.+++++..
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~~iv~~ss~ 141 (237)
T PRK07326 76 IVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALK---RGGGYIINISSL 141 (237)
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHH---HCCeEEEEECCh
Confidence 1234789999988754321 11222 23444544 3333344442 234667777754
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.041 Score=53.30 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| .|.+|..++..|...+.. ..+.. .|++++.++. +.++ .. +.... +.+++.+||+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~-----~~v~~--~d~~~~~~~~-~~~~-----g~---~~~~~-~~~~~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI-----SKVYG--YDHNELHLKK-ALEL-----GL---VDEIV-SFEELKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC-----CEEEE--EcCCHHHHHH-HHHC-----CC---CcccC-CHHHHhcCCEE
Confidence 4899999 599999999999988751 22222 3666665442 2221 11 11112 23335569999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 63 ilav 66 (275)
T PRK08507 63 FLAI 66 (275)
T ss_pred EEeC
Confidence 9985
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.07 Score=49.77 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c--Ccc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~----- 167 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+ . .++.+. . .+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-~----~~~~~~~~D~~~~~~~~~ 70 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-----RVVV----TDRNEEAAERVAAEILA-G----GRAIAVAADVSDEADVEA 70 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhc-C----CeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998874 2443 36776666655555543 1 011111 1 111
Q ss_pred ------cccCCCcEEEEeCCCCC--CCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ------eal~dADiViitag~~r--k~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|+||.++|... .+- .+. .+.+..|.. +.+.+.+.+.+. ..+.+|+++-
T Consensus 71 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 141 (251)
T PRK07231 71 AVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGE--GGGAIVNVAS 141 (251)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 22346799999887632 221 111 223444543 455555555543 3455666654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.075 Score=49.62 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|++++..|+..+. .+.+ .+++.+.++....++.+.. .++.+ ..| +.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~ 69 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-----KVAV----FDLNREAAEKVAADIRAKG----GNAQAFACDITDRDSVDT 69 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999998875 2443 3566666655555554321 11111 111 111
Q ss_pred -------ccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHHHHHHH----HHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQIFAEQ----GKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g---~~r~---dll~~N~~i~~~i----~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|+||..+|...... .+.. ..+..|..-...+ .+.+.+. ..+.+|+++.
T Consensus 70 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~iss 139 (250)
T TIGR03206 70 AVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER--GAGRIVNIAS 139 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEECc
Confidence 1235799999887532111 1221 2355555444443 4444442 4466776664
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.07 Score=50.00 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++....++.... . ++.+ ..| +.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~~~~~~~~ 70 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQKAG-G---KAIGVAMDVTDEEAINA 70 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 36899999999999999999998764 2443 3677677766666654311 1 1111 111 11
Q ss_pred ------cccCCCcEEEEeCCCCCCC-C--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGP-G--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~-g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.+.|+||.+++..... - .+. .+.+..|.. +++.+.+.+++. ..+.+++++.-
T Consensus 71 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~iss~ 141 (258)
T PRK12429 71 GIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ--GGGRIINMASV 141 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc--CCeEEEEEcch
Confidence 1224689999988754211 1 111 122333433 366666666663 45666666643
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=59.41 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++||.|+||+|+||++++..|+..|.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 357899999999999999999998874
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.044 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++.|+||+|++|.+++..|+..|.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.029 Score=55.22 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=58.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| .|.+|..++..|+..+. +|.+ + |++.++++..... .. . ......+..+.+.++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~--~--dr~~~~~~~l~~~---g~-~---~~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVG--Y--DHDQDAVKAMKED---RT-T---GVANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHHc---CC-c---ccCCHHHHHhhcCCCCEE
Confidence 4899999 59999999999998874 3543 3 6777766544321 11 0 000001123456789999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+++... ..++++.+.+.....++.+||..+|..
T Consensus 64 i~~vp~----------------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 64 WVMVPH----------------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred EEEcCc----------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 987421 134444455555435677888888763
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.12 Score=48.52 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc-------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------- 167 (398)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++++.++....++.... ....-+..-..+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-----DVVL----AARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHH
Confidence 346899999999999999999998875 2443 3666666666666554321 1000011111112
Q ss_pred ----cccCCCcEEEEeCCCC
Q 015897 168 ----ELFEDAEWALLIGAKP 183 (398)
Q Consensus 168 ----eal~dADiViitag~~ 183 (398)
+.+...|+||..+|..
T Consensus 74 ~~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 74 ALALERFGRVDALVNNAFRV 93 (258)
T ss_pred HHHHHHcCCccEEEECCccC
Confidence 2235789999988763
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=56.26 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=46.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||++|| .|.+|+.++..|+..|. ++.. + |++.++.. ..+.... ......+.++.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v--~--~r~~~ka~---~~~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTV--Y--NRTPEKAA---ELLAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEE--E--eCChhhhh---HHHHHcC------CcccCCHHHHHHhCCEE
Confidence 4899999 79999999999999986 3433 3 66666643 2222211 12334568999999999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
|.+-.
T Consensus 62 itmv~ 66 (286)
T COG2084 62 ITMLP 66 (286)
T ss_pred EEecC
Confidence 98743
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.027 Score=59.64 Aligned_cols=125 Identities=19% Similarity=0.142 Sum_probs=86.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC------cceEEEecCcc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL------LREVKIGINPY 167 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~------~~~v~i~~~~~ 167 (398)
-+.++|-|+||+|++|+.+...++..+.. .|. ++ |.+|.++...-++|.+.. +. .++++-...-.
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~----~i~--l~--~~~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPK----EII--LF--SRDEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRVE 318 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCC----EEE--Ee--cCchHHHHHHHHHHHhhC-CCcceEEEecccccHHHHH
Confidence 34579999999999999999999988641 244 34 677888888888888643 21 12222222345
Q ss_pred cccCC--CcEEEEeCCCCCCCCCc--hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCchhH
Q 015897 168 ELFED--AEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVV----GNPCNTN 228 (398)
Q Consensus 168 eal~d--ADiViitag~~rk~g~~--r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv----tNP~d~~ 228 (398)
+++++ .|+|+.+|....-|-+| -.+....|+==...++++..++ +=+..|++- .||.|+|
T Consensus 319 ~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 319 RAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred HHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHh
Confidence 78888 99999998876666554 3566777877777888877775 445555553 3777765
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.032 Score=57.44 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--CcccccC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFE 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~ 171 (398)
+.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.++++... .+...... ....++. +..+.+.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~----l~r~~~~l~~~~---~~~~~~v~~v~~Dvsd~~~v~~~l~ 244 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-----KVVA----LTSNSDKITLEI---NGEDLPVKTLHWQVGQEAALAELLE 244 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHH---hhcCCCeEEEEeeCCCHHHHHHHhC
Confidence 356899999999999999999998875 2433 255555443221 11110100 0111111 1124467
Q ss_pred CCcEEEEeCCCCCCCCCch---hhhHHHHHH----HHHHHHHHHHH
Q 015897 172 DAEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (398)
Q Consensus 172 dADiViitag~~rk~g~~r---~dll~~N~~----i~~~i~~~i~~ 210 (398)
+.|++|..+|.......+. .+.++.|.. +++.+.+.+++
T Consensus 245 ~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 245 KVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999887643222222 234555544 55666666655
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.083 Score=52.33 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-CCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (398)
+++||+||| .|.+|..++..|...|. .|.. + |.+.. ...+.++ . +....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-----~V~~--~--d~~~~--~~~a~~~-----g----v~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-----TVLA--T--SRSDY--SDIAAEL-----G----VSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE--E--ECccH--HHHHHHc-----C----CeeeCCHHHHhhCCC
Confidence 356999999 59999999999987653 2432 3 44432 1223221 1 11233344444 479
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHH-HHhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKAL-NAVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i-~~~a~p~a~vIvvtN 223 (398)
|+||++... ..+.++.+.+ ..+..++++|+.++.
T Consensus 94 DvVilavp~----------------~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 94 DVVLLCTSI----------------LSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CEEEEecCH----------------HHHHHHHHhhhhhccCCCCEEEecCC
Confidence 999998531 2334444444 222257787777775
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.029 Score=55.20 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=53.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC---C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d---A 173 (398)
|||+||| .|.+|.+++..|+..+. +|.+ + |+++++++.. .+.. .....+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v--~--dr~~~~~~~~----~~~g------~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVG--Y--DVNQEAVDVA----GKLG------ITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHH----HHCC------CeecCCHHHHHHhCCCC
Confidence 4899999 59999999999998764 2443 3 6766665432 2111 2233344455544 6
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|+||++...+ +.++++...+.....++.++|..|+
T Consensus 61 dvVi~~vp~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 61 RTIWVMVPAG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred CEEEEEecCc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 8998874321 2333333344333246777777754
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.083 Score=49.78 Aligned_cols=118 Identities=15% Similarity=0.039 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
.++|.|+||+|.+|..++..|+..|. .|.+ .+++++.++....++.+...... ....++. .
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-----EVIL----NGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 36899999999999999999998875 2543 36666666655555543210000 0011110 0
Q ss_pred cccccCCCcEEEEeCCCCC-CCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~~eal~dADiViitag~~r-k~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
..+.+...|+||..+|... .+- .+. .+.+..|+. +.+.+.+.+.+. ..+.+|++|..
T Consensus 81 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~iss~ 147 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIAR--GAGKIINIASV 147 (255)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCeEEEEEccc
Confidence 1122345799999887642 111 111 233555644 444444444442 45677777754
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.15 Score=48.22 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------ 169 (398)
.++|.|+||+|.+|++++..|+..|. .+.+ .+++.+.++....++.... ....-+..-..+.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-----RVVL----SARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999998775 2433 3566666655554443211 000001111112222
Q ss_pred -----cCCCcEEEEeCCCCCCCCC------chhhhHHHHHHHHHHHHHHHHHh---cCCCeEEEEECC
Q 015897 170 -----FEDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAV---ASRNVKVIVVGN 223 (398)
Q Consensus 170 -----l~dADiViitag~~rk~g~------~r~dll~~N~~i~~~i~~~i~~~---a~p~a~vIvvtN 223 (398)
+...|.||.++|....... .-...+..|..-...+.+.+.++ ..+.+.+++++.
T Consensus 82 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 2467999998875421111 11233556655555555444332 124567777765
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.021 Score=54.46 Aligned_cols=114 Identities=15% Similarity=-0.018 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (398)
.++|.|+||+|.+|..++..|+..|. .+.+ .+++++.++....++.... . ....++. .-
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~--~-~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAI----GDLDEALAKETAAELGLVV--G-GPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhccce--E-EEccCCCHHHHHHHHHHH
Confidence 46899999999999999999998875 2443 3567777665555443111 0 0111110 01
Q ss_pred ccccCCCcEEEEeCCCCCC-CC--Cc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk-~g--~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.+.|++|..+|.... +- .+ -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 1234578999999886431 11 11 1223455543 455555666653 4567777774
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.15 Score=48.79 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc---ceEEEec--Ccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGI--NPY--- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~---~~v~i~~--~~~--- 167 (398)
.+.+.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... +.. ....++. +-.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~ 77 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-----DVIL----LSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTV 77 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHH
Confidence 35789999999999999999999875 2444 3667677776666664321 100 0111111 001
Q ss_pred ---cccCCCcEEEEeCCCCCCC---CCchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ---ELFEDAEWALLIGAKPRGP---GMERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ---eal~dADiViitag~~rk~---g~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.+... ..+..+ .+..| ..+.+.+.+.+++. ..+.||+++-.
T Consensus 78 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 78 KELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 1234579999988865321 122222 23344 44567777777763 45777777754
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.035 Score=53.29 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~ 143 (398)
+++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~ 42 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-----RVVG----TVRSEAARA 42 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-----EEEE----EeCCHHHHH
Confidence 46899999999999999999998874 2443 356655554
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.13 Score=48.39 Aligned_cols=117 Identities=16% Similarity=0.056 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--Cc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NP------ 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~------ 166 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++++.++....++.+...... ....+.. ..
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-----KVVV----GARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999999998875 2443 36677777766666654320000 0011110 00
Q ss_pred -ccccCCCcEEEEeCCCC--CCC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 -YELFEDAEWALLIGAKP--RGP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 -~eal~dADiViitag~~--rk~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|.. ..+ ..+. ...+..|.. +.+.+.+.+.+. ..+.+|+++.
T Consensus 77 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 77 AVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 11234679999988753 222 1122 233555653 445556666553 4566776664
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.091 Score=49.11 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc-------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++++.++....++.+.. .....+..-..+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-----SVVV----ADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999774 2443 3566555554554444321 11000111011222
Q ss_pred ----ccCCCcEEEEeCCC
Q 015897 169 ----LFEDAEWALLIGAK 182 (398)
Q Consensus 169 ----al~dADiViitag~ 182 (398)
.+...|+||.++|.
T Consensus 76 ~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 76 ATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 22468999998886
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.034 Score=55.31 Aligned_cols=58 Identities=7% Similarity=-0.068 Sum_probs=42.2
Q ss_pred eEEEecC--cccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHH
Q 015897 159 EVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (398)
Q Consensus 159 ~v~i~~~--~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~ 232 (398)
+++++++ .++++++||+||.+. .++..+-+++...+.+.+.|++++ +||-.......+
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l 123 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL 123 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH
Confidence 5666554 568899999999984 345677788888888887778777 888766544333
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.12 Score=48.05 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCccc-----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYE----- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~e----- 168 (398)
+|+++.|+||+|.+|..++..|+..|. .|.+ .+++++.++....++.+...... ....++ +++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~ 73 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-----DLAL----VARSQDALEALAAELRSTGVKAAAYSIDLS--NPEAIAPG 73 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhCCCcEEEEEccCC--CHHHHHHH
Confidence 466899999999999999999998875 2443 35666665555444432110100 011111 111
Q ss_pred ------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 ------al~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|.++|.... + ..+. ...+..|.. +.+...+.+.+. ..+.+|+++..
T Consensus 74 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (241)
T PRK07454 74 IAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR--GGGLIINVSSI 143 (241)
T ss_pred HHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 23458999998886432 1 1111 123444444 344455555552 35667777644
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.047 Score=55.34 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-CcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (398)
+||+|+||+|.||+.+...|....-|.- ..+.++.. ++..|....+. .....+.. ++.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss----~~s~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFST----SQLGQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEc----hhhCCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999998884444432 33434422 22222221111 11223332 23358999999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999876
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.082 Score=50.27 Aligned_cols=117 Identities=14% Similarity=0.050 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------ 169 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... ....-+..-..+++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-----DVLI----AARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999998875 2443 3666666666666654321 100001111112222
Q ss_pred -----cCCCcEEEEeCCCCCC--CC-Cc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 -----FEDAEWALLIGAKPRG--PG-ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 -----l~dADiViitag~~rk--~g-~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+...|+||..+|.... .. .+ -.+.+..|..- .+...+.+.+. ...+.+++++.
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~g~iv~~sS 147 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEH-SGGGSVINISS 147 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhh-cCCeEEEEEcc
Confidence 3468999998875321 11 11 12334555443 33333444443 34577777775
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.054 Score=51.19 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|||+ |.||..++..+-.... +- ++.+ + .|++++++.....-+. ... .++..+.+.+.|++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~-~~--e~v~-v--~D~~~ek~~~~~~~~~-------~~~--~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRV-DF--ELVA-V--YDRDEEKAKELEASVG-------RRC--VSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCc-ce--eEEE-E--ecCCHHHHHHHHhhcC-------CCc--cccHHHHhhcccee
Confidence 58999995 9999999887766542 21 2332 2 3777776653332211 111 14455566999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+-+++ .+.+++++.++=+. +.+.+|+.++-=+|
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALad 97 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALAD 97 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhccC
Confidence 99987 57889999888885 68899888875554
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.1 Score=49.13 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~---------~~ 166 (398)
+++.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++....++.+..... .....++. ..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-----KVAI----VDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4789999999999999999998874 2443 3566666665666655321000 00111111 01
Q ss_pred ccccCCCcEEEEeCCCCC-CCCC--ch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPR-GPGM--ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~r-k~g~--~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|.++|... .+-. +. ...+..|.. +.+.+.+.+.+. .+++.+++++--
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~ 140 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKL-GHGGKIINATSQ 140 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCEEEEECcc
Confidence 122346899999987642 2211 11 123444543 344444445443 345777777754
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=48.65 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc-----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e----- 168 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... . ++. +..| +.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-----RLAL----ADVNEEGGEETLKLLREAG-G---DGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEEccCCCHHHHHHH
Confidence 3789999999999999999999875 2443 3566666666666655321 1 111 1111 111
Q ss_pred ------ccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 ------LFEDAEWALLIGAKPRG-P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 ------al~dADiViitag~~rk-~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|.++|.... + ..+.. ..+..|. .+.+.+.+.+++. ..+.+|+++-
T Consensus 68 ~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~vsS 136 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ--KSGRIVNIAS 136 (270)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 22468999998875421 1 11111 2345553 3445555556553 3466666664
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.029 Score=53.36 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .+ ....+.. + -
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-----RVAI----VDIDADNGAAVAASLGERA-RF-IATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCee-EE-EEecCCCHHHHHHHHHHH
Confidence 35899999999999999999998875 2443 3666666655544432111 00 0111110 0 1
Q ss_pred ccccCCCcEEEEeCCCCCCCC--Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g--~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|.....+ .+.. +.+..|.. +.+.+.+.+. .+++.+|+++-
T Consensus 75 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~g~ii~isS 137 (261)
T PRK08265 75 VARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA---RGGGAIVNFTS 137 (261)
T ss_pred HHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh---cCCcEEEEECc
Confidence 122346799999887642221 2222 23444544 3344444443 24567777663
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.061 Score=49.75 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
+++|.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-----KVVI----YDSNEEAAEALAAELR 50 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChhHHHHHHHHHH
Confidence 46899999999999999999998875 2433 3566666655555554
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.05 Score=55.31 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=41.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (398)
|+||+|+||+|.+|..+...|+...-|.. ..+.++.. +...+..-++.. ....+. ..+.++++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss----~~sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFST----SQAGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecc----hhhCCcccccCC------CcceEEecCChhHhcCCC
Confidence 57999999999999999986666554432 12222321 111111111111 111222 23356789999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999765
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=54.25 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC---CC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (398)
|||+||| .|.+|+.++..|+..+. ++.+ + |+++++++... +.. +....+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-----~v~v--~--dr~~~~~~~~~----~~g------~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-----EVVG--Y--DRNPEAVEALA----EEG------ATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHHH----HCC------CeecCCHHHHHhhcCCC
Confidence 4899999 59999999999998764 3443 3 67766655332 111 222333334444 46
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+||++.
T Consensus 61 dvvi~~v 67 (301)
T PRK09599 61 RVVWLMV 67 (301)
T ss_pred CEEEEEe
Confidence 9988864
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.013 Score=57.47 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+||| .|.+|..++..|+..+. .+.+ + |++.++++.... .. .....+..+++++||+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v--~--d~~~~~~~~~~~----~g------~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQV--F--DVNPQAVDALVD----KG------ATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHH----cC------CcccCCHHHHHhcCCE
Confidence 45899999 59999999999998874 2443 3 666666553321 11 1233456778899999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
||++.
T Consensus 61 Vi~~v 65 (296)
T PRK15461 61 VITML 65 (296)
T ss_pred EEEec
Confidence 99864
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.13 Score=51.28 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=78.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcC----cCCCCCceEEEecccccch--hhHHHHHHHHhhhcCCC------cceEE
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGE----VLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPL------LREVK 161 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~----~~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~~~~------~~~v~ 161 (398)
+.+.||+||| +|+=|++++..+...- .|.. .|.+-.++...+. ++|...... .|....+ ..++.
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~--~Vrmwv~ee~i~~~~~~L~eiIN~-~heN~KYlpg~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDP--QVRMWVFEEEINGEAEKLTEIINS-RHENVKYLPGIKLPENVV 94 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhccccCc--eeeEEEeccccCChhHHHHHHhcc-ccccccccCCccCCCCeE
Confidence 4457999999 6999999998776542 2332 3555444433433 233322222 1111111 23577
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC--------C-chhHHHHH
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--------P-CNTNALIC 232 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--------P-~d~~t~~~ 232 (398)
..+|..++.+|||++|+.-- -+.+..+++.|..+-.|++..|..+. | ..+++.++
T Consensus 95 Av~dl~ea~~dADilvf~vP----------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI 158 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVVP----------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQII 158 (372)
T ss_pred ecchHHHHhccCCEEEEeCC----------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHH
Confidence 77889999999999998742 25666677777776666666655432 2 34566777
Q ss_pred HHHCCCCCCceE
Q 015897 233 LKNAPSIPAKNF 244 (398)
Q Consensus 233 ~k~~~~~~~kvi 244 (398)
.+.. ++|..++
T Consensus 159 ~~~l-gI~~~vL 169 (372)
T KOG2711|consen 159 HRAL-GIPCSVL 169 (372)
T ss_pred HHHh-CCCceee
Confidence 6665 5654433
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.045 Score=55.22 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=46.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
..+.+||+|+||+|.+|..++..|....-|.- -.|.++..+.+. |....+. . .+..+..-+.+++++
T Consensus 2 ~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~sa----Gk~~~~~----~--~~l~v~~~~~~~~~~ 68 (347)
T PRK06728 2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRSA----GKTVQFK----G--REIIIQEAKINSFEG 68 (347)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECcccC----CCCeeeC----C--cceEEEeCCHHHhcC
Confidence 34557999999999999999998885554431 113334333221 1111111 1 134444345667899
Q ss_pred CcEEEEeCC
Q 015897 173 AEWALLIGA 181 (398)
Q Consensus 173 ADiViitag 181 (398)
+|+|+++.+
T Consensus 69 ~Divf~a~~ 77 (347)
T PRK06728 69 VDIAFFSAG 77 (347)
T ss_pred CCEEEECCC
Confidence 999999764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=50.28 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec--Cc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NP------ 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~------ 166 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++....... .....+.. +.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35899999999999999999998874 2443 3677777776666554321000 00111110 00
Q ss_pred -ccccCCCcEEEEeCCCCC-CCCCc----h---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 -YELFEDAEWALLIGAKPR-GPGME----R---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 -~eal~dADiViitag~~r-k~g~~----r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|.++|... .+-.+ . ...+..|. .+.+.+.+.+.+. ..+.+|+++.
T Consensus 111 ~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 178 (293)
T PRK05866 111 VEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER--GDGHIINVAT 178 (293)
T ss_pred HHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 112447899999887542 11111 1 12344443 3455555566553 3566666664
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.12 Score=48.06 Aligned_cols=118 Identities=14% Similarity=0.020 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--c----
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P---- 166 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~---- 166 (398)
.+.++|.|+||+|.+|++++..|+..|. .+.+ .. ..++..++....++.... .++.. ..| +
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-----~v~~--~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~ 70 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF-----AVAV--NY-AGSAAAADELVAEIEAAG----GRAIAVQADVADAAAV 70 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--ec-CCCHHHHHHHHHHHHhcC----CeEEEEECCCCCHHHH
Confidence 3456899999999999999999999875 2433 11 223333444444443221 11111 111 1
Q ss_pred ccc-------cCCCcEEEEeCCCCCC-C--CCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YEL-------FEDAEWALLIGAKPRG-P--GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~ea-------l~dADiViitag~~rk-~--g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+. +...|+||..+|.... + ..+ -...+..|..-...+.+.+.+....++.+++++-
T Consensus 71 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 71 TRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 122 3468999998875421 1 011 1233555544444444443332234567777763
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.098 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 359999995 9999999999999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.027 Score=54.31 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=62.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--CcccccCC--
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFED-- 172 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~d-- 172 (398)
||.|+||+|++|.+++..|+..+.-. .|.+ ++.+......+ ...++.... ... ....+.. +..+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~---~v~~--~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDA---EVIV--LDKLTYAGNLE-NLADLEDNP-RYRFVKGDIGDRELVSRLFTEHQ 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCC---EEEE--ecCCCcchhhh-hhhhhccCC-CcEEEEcCCcCHHHHHHHHhhcC
Confidence 58999999999999999998765211 2332 22111111111 111221100 000 0001111 12344555
Q ss_pred CcEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 173 ADiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+|+||.+++... .....-..++..|..-...+++.+.+. ..+..++.+|
T Consensus 74 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~i~~S 124 (317)
T TIGR01181 74 PDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY-WHEFRFHHIS 124 (317)
T ss_pred CCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEee
Confidence 899999887532 111223456778888888888888775 3455666655
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.028 Score=53.89 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=59.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC--CcE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--ADi 175 (398)
||.|+||+|++|++++..|+..|. .+.. +++. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~----~~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA----LTSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE----eCCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999998764 2432 2332 11222111 12233343 499
Q ss_pred EEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+++...... .....+...|......+++.+.+. + ..+|.+|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 99 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIS 99 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEe
Confidence 999887643221 234456778888888888888774 2 3555555
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.02 Score=54.25 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++||.|+||+|++|..++..|+..+.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 4467999999999999999999998764
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.03 Score=54.04 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=59.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC-cEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA-DiV 176 (398)
+|.|+||+|+||++++..|+..|. .|.. +|+......... .+..+ ...++.-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~---~~~~~-~~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRG----LDRLRDGLDPLL---SGVEF-VVLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEE----EeCCCccccccc---cccce-eeecccchHHHHHHHhcCCCEE
Confidence 499999999999999999999754 2332 244332221111 00000 000110001223445555 999
Q ss_pred EEeCCCCCCCCCch---hhhHHHHHHHHHHHHHHHHH
Q 015897 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (398)
Q Consensus 177 iitag~~rk~g~~r---~dll~~N~~i~~~i~~~i~~ 210 (398)
|.+++....++..+ .++...|+.-...+.++..+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99987664444332 35788999999999999988
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.053 Score=54.49 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=43.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+|+||+|+||+|.+|..++..|..++.-. ..|.++-.. +.+ |.-..+.. .+..+...+.++++++
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~----~~l~~v~s~---~~a-G~~l~~~~------~~l~~~~~~~~~~~~v 67 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPV----GTLHLLASS---ESA-GHSVPFAG------KNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCc----eEEEEEECc---ccC-CCeeccCC------cceEEeeCChHHhcCC
Confidence 456899999999999999999998654311 333333111 111 11111111 1233332233457899
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|+|+++.+
T Consensus 68 D~vFla~p 75 (336)
T PRK05671 68 QLAFFAAG 75 (336)
T ss_pred CEEEEcCC
Confidence 99999754
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.043 Score=55.35 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
..+||+|+||+|.+|..++..|..++.-. ..|.++..+++..+ ..+.. . .++.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~----~~l~~las~rsaGk----~~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPY----SSLKMLASARSAGK----KVTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCc----ceEEEEEccCCCCC----eeeec----C--ceeEEEeCCHHHHcCCC
Confidence 45799999999999999999888754311 23332323332211 11111 1 23334333456789999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999765
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.073 Score=46.33 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=68.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH-HhhhcCCCcc-e--EEEecCcc-cccCCC
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLR-E--VKIGINPY-ELFEDA 173 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D-L~d~~~~~~~-~--v~i~~~~~-eal~dA 173 (398)
|+|+|| |.+|..++..|.+.+. ++.+ +.+.. .++....+ +. ....... . .......+ +..+..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l----~~r~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTL----VSRSP-RLEAIKEQGLT-ITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEE----EESHH-HHHHHHHHCEE-EEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEE----EEccc-cHHhhhheeEE-EEecccceecccccccCcchhccCCC
Confidence 789995 9999999999988664 4655 24544 44432211 10 0001111 1 11112222 578899
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCc
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~ 249 (398)
|+||++.... -..+..+.++.+..++..|+.+-|=++..-.+. +..+. ++++++.+.
T Consensus 69 D~viv~vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~~--~~v~~g~~~ 125 (151)
T PF02558_consen 69 DLVIVAVKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFPR--PRVLGGVTT 125 (151)
T ss_dssp SEEEE-SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHSTG--SGEEEEEEE
T ss_pred cEEEEEeccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcCC--CcEEEEEEe
Confidence 9999985321 223455556777678889999999877664443 33322 266665544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.07 Score=51.70 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+||| .|.+|..++..|...+. +- ++. .+ .|++.++++..+.++ .....++..+.+.++|+
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~-~~--elv-~v--~d~~~~~a~~~a~~~---------~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRI-NA--ELY-AF--YDRNLEKAENLASKT---------GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCC-Ce--EEE-EE--ECCCHHHHHHHHHhc---------CCeeECCHHHHhcCCCE
Confidence 57999999 59999999998876542 10 122 22 366666655433321 11233444555589999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+++..
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999864
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.042 Score=47.95 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.++|+|+|+ |.+|..++..|...+. . .+.+ .|++.++++..+.++.... ... ...+..+.++++|+
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~-~---~v~v----~~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~Dv 84 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGA-A---KIVI----VNRTLEKAKALAERFGELG----IAI-AYLDLEELLAEADL 84 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-C---EEEE----EcCCHHHHHHHHHHHhhcc----cce-eecchhhccccCCE
Confidence 569999995 9999999999988762 2 2443 3677777776666554210 011 12345566899999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||++...+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99986543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.037 Score=51.90 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--CcccccC--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~-- 171 (398)
|.++.|+||+|.+|..++..|+..|. .+.+ .++++++++.......+.. .....++. +-.+.++
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~ 68 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW-----QVIA----CGRNQSVLDELHTQSANIF---TLAFDVTDHPGTKAALSQL 68 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHhcCCCe---EEEeeCCCHHHHHHHHHhc
Confidence 35799999999999999999998775 2443 3667666654433211110 00111111 1111222
Q ss_pred --CCcEEEEeCCCCC-CC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 --DAEWALLIGAKPR-GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 --dADiViitag~~r-k~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.-|.+|..+|... .+ ..+. .+.+..|..-...+.+.+...-..++.+++++.
T Consensus 69 ~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 69 PFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred ccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 2477777666431 11 1222 234666766555566555543223456666654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.042 Score=50.30 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cC---ccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~---~~eal 170 (398)
.+|+.|+||+|.+|..++..|+..+. .+.+ .+++.++++..+.++.+.. .. .+... .+ ..+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l----~~R~~~~~~~l~~~l~~~~-~~--~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL----VGRDLERAQKAADSLRARF-GE--GVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhhc-CC--cEEEeeCCCHHHHHHHH
Confidence 46999999889999999999988653 2443 3677788877776664321 11 12211 11 24788
Q ss_pred CCCcEEEEeCCC
Q 015897 171 EDAEWALLIGAK 182 (398)
Q Consensus 171 ~dADiViitag~ 182 (398)
+++|+||.+...
T Consensus 96 ~~~diVi~at~~ 107 (194)
T cd01078 96 KGADVVFAAGAA 107 (194)
T ss_pred hcCCEEEECCCC
Confidence 999998887543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.096 Score=49.32 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcc-------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPY------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~------- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+..... .....+ .++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-----~vvl----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl--~~~~~~~~~~ 77 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-----EIII----NDITAERAELAVAKLRQEGIKAHAAPFNV--THKQEVEAAI 77 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHhcCCeEEEEecCC--CCHHHHHHHH
Confidence 45899999999999999999998774 2444 3667677766666665432000 000111 112
Q ss_pred ----cccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ----ELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ----eal~dADiViitag~~r-k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|+||.++|... .+ ..+.. ..+..|.. +.+.+.+.+.+ ...+.+|+++.
T Consensus 78 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~iv~isS 145 (254)
T PRK08085 78 EHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVK--RQAGKIINICS 145 (254)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCcEEEEEcc
Confidence 22345799999887532 11 11222 23455533 34444444443 23466776664
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.21 Score=46.48 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ ++++.+.++....++.... .++.+. .| +.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 73 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-----NVGL----LARTEENLKAVAEEVEAYG----VKVVIATADVSDYEEVTA 73 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC----CeEEEEECCCCCHHHHHH
Confidence 35899999999999999999998875 2443 3566666655555554211 122211 11 11
Q ss_pred ------cccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.+.|+||.++|...... .+.. ..+..|.. +.+.+.+.+.+. ..+.+++++..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~ss~ 144 (239)
T PRK07666 74 AIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIER--QSGDIINISST 144 (239)
T ss_pred HHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCcEEEEEcch
Confidence 12347899999887643211 1111 23444443 344444444442 34566666654
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.12 Score=50.37 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (398)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.... +. .++.+ ..| +.
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-----HVVL----AVRNLDKGKAAAARITAAT-PG-ADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CC-CceEEEECCCCCHHHHHH
Confidence 46899999999999999999998874 2443 2556666655555554221 10 11111 111 11
Q ss_pred ------cccCCCcEEEEeCCCCCCCC-Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG-MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g-~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|....+. .+. ...+..|. .+...+.+.+.+. ..+.||+++-
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 152 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSS 152 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 12346899999887532111 111 12234443 3466666666663 4567777764
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.028 Score=53.13 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ .|++.++++....++.... ......++. + -
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~-----~v~~----~~~~~~~~~~~~~~~~~~~--~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW-----QVVL----ADLDRERGSKVAKALGENA--WFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHcCCce--EEEEccCCCHHHHHHHHHHH
Confidence 45899999999999999999998774 2443 2555444443333321110 000111111 0 0
Q ss_pred ccccCCCcEEEEeCCCCCC---C--CCch---hhhHHHHHHHHHHHHHHHHHhc-CCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRG---P--GMER---AGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk---~--g~~r---~dll~~N~~i~~~i~~~i~~~a-~p~a~vIvvtN 223 (398)
.+.+...|++|..+|.... + ..+. ...+..|..-...+.+.+.++- ...+.+|+++-
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS 144 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS 144 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 1112357999999886532 1 1122 2345566554444444443210 13466777764
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.21 Score=47.64 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=65.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEec---------C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~---------~ 165 (398)
+++.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++........ ....++. .
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-----~vv~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-----ELFL----TDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 3789999999999999999998774 2443 35666666666666553211100 0111110 0
Q ss_pred cccccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 166 PYELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
..+.+...|+||..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ...+.+|+++-..
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~g~ii~isS~~ 140 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAA-GRGGHLVNVSSAA 140 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEcccc
Confidence 11234568999998876421 1 11221 23445544 333444444442 2456777777543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.055 Score=51.08 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .. ....++. + -
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-----RVVI----ADIKPARARLAALEIGPAA-IA-VSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHhCCce-EE-EEccCCCHHHHHHHHHHH
Confidence 35799999999999999999999875 2443 3667676665555543211 00 0111110 0 1
Q ss_pred ccccCCCcEEEEeCCCCC-CCC--Cch---hhhHHHHHHHHHHHHH----HHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGK----ALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~r-k~g--~~r---~dll~~N~~i~~~i~~----~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|.++|... .+- .+. ...+..|..-...+.+ .+.+. ..++.+++++-
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS 140 (257)
T PRK07067 75 VERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQ-GRGGKIINMAS 140 (257)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-CCCcEEEEeCC
Confidence 122346899999887542 111 111 2235555443333333 33332 24567777765
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.13 Score=48.26 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cccc-----
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL----- 169 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea----- 169 (398)
++.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++....++.+.. .++.. ..| +.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~i~~~~ 68 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-----AVAV----ADLNEETAKETAKEINQAG----GKAVAYKLDVSDKDQVFSAI 68 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHH
Confidence 689999999999999999998875 2443 2555566655555554321 11111 111 2222
Q ss_pred ------cCCCcEEEEeCCCCC-CC--CCchhh---hHHHHH----HHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 170 ------FEDAEWALLIGAKPR-GP--GMERAG---LLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 170 ------l~dADiViitag~~r-k~--g~~r~d---ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+...|+||.++|... .+ ..+..+ .+..|. .+++.+.+.+.+. +.++.+++++
T Consensus 69 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~s 136 (254)
T TIGR02415 69 DQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQ-GHGGKIINAA 136 (254)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEec
Confidence 235699999887532 11 222222 244443 3445555666654 3456776665
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=49.95 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--Cccccc--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELF-- 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal-- 170 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++........ ....++. ...+.+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-----HVIM----ACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999998874 2443 36677777666666532110000 0111110 001111
Q ss_pred -----CCCcEEEEeCCCCCC----CCCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 -----EDAEWALLIGAKPRG----PGMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 -----~dADiViitag~~rk----~g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
...|++|..+|.... +..+. ...+..|.- +.+.+.+.+.+.....+.||+++
T Consensus 77 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 77 FRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred HHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999998885321 11222 223455543 45555666665311125666665
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.19 Score=47.19 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-----~v~~----~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-----IVIA----ADIDKEALNELLESLG 49 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EecChHHHHHHHHHHH
Confidence 46899999999999999999998875 2443 2566677766666653
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.2 Score=46.75 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=66.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCCc---ceEEEecC--------
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLL---REVKIGIN-------- 165 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~~---~~v~i~~~-------- 165 (398)
||.|+||+|.+|.+++..|+..|. .+.+ . +++ .+.++....++.+...... ....++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFL--T--DINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA 71 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--eCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence 588999999999999999998774 2443 2 444 4556555555543210100 01111110
Q ss_pred -cccccCCCcEEEEeCCCCCC-C--CCc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 -PYELFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 -~~eal~dADiViitag~~rk-~--g~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+...|+||..+|.... + ..+ -...+..|+. ..+.+.+.+.+. ..+.+|+++..
T Consensus 72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~ 139 (251)
T PRK07069 72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSV 139 (251)
T ss_pred HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecCh
Confidence 01224568999998876431 1 111 1234566665 667777777764 34667776643
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=50.39 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYE------ 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~e------ 168 (398)
.++|.|+||+|.+|..++..|+..|. .|.+ .+++++.++....++........ ....+ .+.+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv--~d~~~v~~~~ 76 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIRAAGGEALAVVADV--ADAEAVQAAA 76 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcCCcEEEEEecC--CCHHHHHHHH
Confidence 35899999999999999999998875 2443 36777777766666653221100 01111 1222
Q ss_pred -----ccCCCcEEEEeCCCCC-CC-C-Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -----LFEDAEWALLIGAKPR-GP-G-MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -----al~dADiViitag~~r-k~-g-~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|... .+ . .+.. ..+..| ....+.+.+.+.+. ..+.+|+++-
T Consensus 77 ~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~--~~g~iV~isS 144 (334)
T PRK07109 77 DRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR--DRGAIIQVGS 144 (334)
T ss_pred HHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 2346799999887542 11 1 1111 123333 34455666666653 3567777664
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.15 Score=48.09 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=46.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-C--ccc-----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PYE----- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~e----- 168 (398)
++|.|+||+|.+|.+++..|+..+. .+.+ ++++.+.++....++.... . .+.+.. | +++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-----~Vi~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-----QLVL----AARNETRLASLAQELADHG-G---EALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHHH
Confidence 5799999999999999999998774 2443 3566666665555554322 1 222111 1 222
Q ss_pred ------ccCCCcEEEEeCCCC
Q 015897 169 ------LFEDAEWALLIGAKP 183 (398)
Q Consensus 169 ------al~dADiViitag~~ 183 (398)
.+...|+||.++|..
T Consensus 69 ~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 69 IEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 123679999988754
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.12 Score=48.99 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Cccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~e---- 168 (398)
..+|.|+||+|.+|..++..|+..|. .|.+ .+++++.++....++.... ++.. .. .+.+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~ 70 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-----RLLL----VGRNAEKLEALAARLPYPG-----RHRWVVADLTSEAGREA 70 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHhcCC-----ceEEEEccCCCHHHHHH
Confidence 46899999999999999999998874 2443 3667666665554442111 1111 11 1111
Q ss_pred ------ccCCCcEEEEeCCCCCCCCC---ch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 ------LFEDAEWALLIGAKPRGPGM---ER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 ------al~dADiViitag~~rk~g~---~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|.++|....... +. .+.+..|..- .+.+.+.+.+ ...+.+++++.-
T Consensus 71 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~--~~~~~iv~isS~ 140 (263)
T PRK09072 71 VLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRA--QPSAMVVNVGST 140 (263)
T ss_pred HHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 13568999999886532111 11 2234455433 3333344443 234666766653
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.038 Score=55.34 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| .|.+|..++..|...|. .|.. + |++.+... +. .....+..+.+++||+|
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~--~--d~~~~~~~----~~----------~~~~~~l~ell~~aDiV 202 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGFGA-----TITA--Y--DAYPNKDL----DF----------LTYKDSVKEAIKDADII 202 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--eCChhHhh----hh----------hhccCCHHHHHhcCCEE
Confidence 5899999 59999999999887654 2432 3 55433211 10 01223567889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+++.... . .+..++. .+.+... .+++++|+++==
T Consensus 203 il~lP~t-----~------~t~~li~--~~~l~~m-k~gavlIN~aRG 236 (330)
T PRK12480 203 SLHVPAN-----K------ESYHLFD--KAMFDHV-KKGAILVNAARG 236 (330)
T ss_pred EEeCCCc-----H------HHHHHHh--HHHHhcC-CCCcEEEEcCCc
Confidence 9875321 0 1112221 1233333 689999998854
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.05 Score=51.99 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC---------cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------PY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---------~~ 167 (398)
++|.|+||+|++|++++..|+..|. .+.+ .+++.+.++.....+.... .. ....++.. ..
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-----RVAA----TVRRPDALDDLKARYGDRL-WV-LQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhccCce-EE-EEccCCCHHHHHHHHHHHH
Confidence 4799999999999999999998874 2433 2455554443222211100 00 01111110 01
Q ss_pred cccCCCcEEEEeCCCCCC-CCC--ch---hhhHHHHHHHHHHHHHH----HHHhcCCCeEEEEECC
Q 015897 168 ELFEDAEWALLIGAKPRG-PGM--ER---AGLLDINGQIFAEQGKA----LNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~dADiViitag~~rk-~g~--~r---~dll~~N~~i~~~i~~~----i~~~a~p~a~vIvvtN 223 (398)
+.+...|+||.++|.... +.. +. ...+..|..-...+.+. +++. ..+.+|+++-
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~~sS 135 (276)
T PRK06482 72 AALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQ--GGGRIVQVSS 135 (276)
T ss_pred HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 123467999999886532 211 11 23455565544444444 4442 3456666653
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.22 Score=46.95 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.+.. .....+..-..++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-----QVAI----AARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHH
Confidence 35899999999999999999998875 2444 3567677776666665422 1000011101111
Q ss_pred ---cccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEEC
Q 015897 168 ---ELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 168 ---eal~dADiViitag~~r-k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+.+...|++|..+|... .+ ..+.. ..+..|.. +.+.+.+.+.+. ..++.+++++
T Consensus 79 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~g~iv~~s 145 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQ-GQGGVIINTA 145 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhc-CCCcEEEEEC
Confidence 22357899999887642 11 11222 23444443 344444555443 2346666665
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.22 Score=50.87 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=60.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH--HHHHHhhhcCCCcc--eEEEe--cCcc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG--VAMELEDSLFPLLR--EVKIG--INPY 167 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g--~a~DL~d~~~~~~~--~v~i~--~~~~ 167 (398)
.+++||.|+||+|++|++++..|+..|. .|.+ ++++...+.. ...++.... +... ...++ ....
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~-----~V~~----l~R~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~ 127 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY-----NVVA----VAREKSGIRGKNGKEDTKKEL-PGAEVVFGDVTDADSLR 127 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EEechhhccccchhhHHhhhc-CCceEEEeeCCCHHHHH
Confidence 3457999999999999999999998774 2433 2444333211 011111100 1000 11111 1122
Q ss_pred cccC----CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFE----DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~----dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.++ ++|+||.+++.+.. + ..+....|.+....+.+.+++. +- ..+|.++.
T Consensus 128 ~~~~~~~~~~D~Vi~~aa~~~~-~--~~~~~~vn~~~~~~ll~aa~~~-gv-~r~V~iSS 182 (390)
T PLN02657 128 KVLFSEGDPVDVVVSCLASRTG-G--VKDSWKIDYQATKNSLDAGREV-GA-KHFVLLSA 182 (390)
T ss_pred HHHHHhCCCCcEEEECCccCCC-C--CccchhhHHHHHHHHHHHHHHc-CC-CEEEEEee
Confidence 3344 58999987664321 1 1123445666667777777764 22 34555553
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.04 Score=56.08 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+||||.|.+|..++..|...|. +|.+ + |++.. .+..+.+++||+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-----~V~~--~--d~~~~-----------------------~~~~~~~~~aDl 145 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-----QVRI--L--EQDDW-----------------------DRAEDILADAGM 145 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-----eEEE--e--CCCcc-----------------------hhHHHHHhcCCE
Confidence 47999999679999999999998874 2443 4 43210 122456789999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||++... ....++.+.+... .|+++|+-+|-
T Consensus 146 VilavP~----------------~~~~~~~~~l~~l-~~~~iv~Dv~S 176 (374)
T PRK11199 146 VIVSVPI----------------HLTEEVIARLPPL-PEDCILVDLTS 176 (374)
T ss_pred EEEeCcH----------------HHHHHHHHHHhCC-CCCcEEEECCC
Confidence 9998531 1223333444443 57777766654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=49.16 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
++|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-----TLGL----VARRTDALQAFAARL 46 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 5899999999999999999998874 2443 366666666555544
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.25 Score=46.37 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ ++++.+.++....++.+.. .....+..-..+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-----HVIV----SSRKLDGCQAVADAIVAAG-GKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999998874 2443 3667677766666665432 1000111111111
Q ss_pred ---cccCCCcEEEEeCCCC--CCC--CCchh---hhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ---ELFEDAEWALLIGAKP--RGP--GMERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ---eal~dADiViitag~~--rk~--g~~r~---dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.- ..+ ..+.. ..+..|..- .+.+.+.+.+. ..+.+++++-
T Consensus 78 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 145 (252)
T PRK07035 78 HIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQ--GGGSIVNVAS 145 (252)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCcEEEEECc
Confidence 1234579999887642 122 12222 234445333 34444454442 4567777764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.19 Score=47.36 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-Eec--Cccc-----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI--NPYE----- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~--~~~e----- 168 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ +|++.+.++....++.... +. .++. +.. .+.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-----RVAV----ADINSEKAANVAQEINAEY-GE-GMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-CC-ceeEEEEccCCCHHHHHHH
Confidence 3799999999999999999998874 2443 3666666655555554321 10 0111 111 1111
Q ss_pred ------ccCCCcEEEEeCCCCCCCC---Cchhh---hHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 ------LFEDAEWALLIGAKPRGPG---MERAG---LLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 ------al~dADiViitag~~rk~g---~~r~d---ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|+||.++|.+.... .+..+ .+..|+. +.+.+.+.+.+. ++++.+|+++..
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~~iv~~ss~ 142 (259)
T PRK12384 72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRD-GIQGRIIQINSK 142 (259)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC-CCCcEEEEecCc
Confidence 1246799999988653211 12222 2333432 355666666553 335777777764
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.15 Score=49.59 Aligned_cols=121 Identities=13% Similarity=-0.003 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--C-------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--N------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~------- 165 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ ...+.+...++.....++....... ....++. .
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-----DIAL--NYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-----EEEE--EeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 35899999999999999999998875 2443 2222222233333444433210000 0011110 0
Q ss_pred cccccCCCcEEEEeCCCCC--CC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 PYELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ~~eal~dADiViitag~~r--k~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..+.+...|++|..+|... .+ ..+. ...+..|+.-...+.+.+..+...++.||+++.
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 1223456899999988642 22 1122 234666766555555555543234567777764
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.047 Score=54.53 Aligned_cols=75 Identities=21% Similarity=0.171 Sum_probs=53.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
+...+++||| +|..|...+..+....-+. .|.+ + |++.++++..+.++.+. ..++....+..+++++|
T Consensus 126 ~~~~~lgiiG-~G~qA~~~l~al~~~~~~~---~v~V--~--~r~~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 126 KDSSVLGIIG-AGRQAWTQLEALSRVFDLE---EVSV--Y--CRTPSTREKFALRASDY----EVPVRAATDPREAVEGC 193 (325)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHhh----CCcEEEeCCHHHHhccC
Confidence 3457999999 5999998776665532222 3544 3 78888888888777632 12456667888999999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++-
T Consensus 194 DiVitaT 200 (325)
T TIGR02371 194 DILVTTT 200 (325)
T ss_pred CEEEEec
Confidence 9999753
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.015 Score=53.67 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=64.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH-HHhhhcCCCcceEEEe--cCcccccCCC--
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-ELEDSLFPLLREVKIG--INPYELFEDA-- 173 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~-DL~d~~~~~~~~v~i~--~~~~eal~dA-- 173 (398)
|.|+||+|++|++++..|+..+. .+ +.+.. ..+ +....... ++... ...+. ....+.+++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-----~v-~~~~~-~~~-~~~~~~~~~~~~~~------~~dl~~~~~~~~~~~~~~~ 66 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-----EV-IVLSR-SSN-SESFEEKKLNVEFV------IGDLTDKEQLEKLLEKANI 66 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-----EE-EEEES-CST-GGHHHHHHTTEEEE------ESETTSHHHHHHHHHHHTE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-----cc-ccccc-ccc-ccccccccceEEEE------EeeccccccccccccccCc
Confidence 78999999999999999999885 22 22222 111 11111110 11100 01111 1233555555
Q ss_pred cEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|.||.+++... .....-.+....|......+.+.+.+. .. .++|.++-
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~~i~~sS 116 (236)
T PF01370_consen 67 DVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GV-KRFIFLSS 116 (236)
T ss_dssp SEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TT-SEEEEEEE
T ss_pred eEEEEeeccccccccccccccccccccccccccccccccc-cc-cccccccc
Confidence 99999987643 011244577888999999999999986 33 56666653
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.31 Score=45.84 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCccc-------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYE------- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~e------- 168 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++....... .....++ +.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~ 70 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-----NVVI----TGRTKEKLEEAKLEIEQFPGQVLTVQMDVR--NPEDVQKMVE 70 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcEEEEEecCC--CHHHHHHHHH
Confidence 4789999999999999999998775 2433 3566666665655554321000 0011111 111
Q ss_pred ----ccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEEC
Q 015897 169 ----LFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 169 ----al~dADiViitag~~r-k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+...|++|..+|... .+ ..+.. ..+..|.. +.+.+.+.+.+. ...+.+|+++
T Consensus 71 ~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~g~ii~is 137 (252)
T PRK07677 71 QIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEK-GIKGNIINMV 137 (252)
T ss_pred HHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCCEEEEEEc
Confidence 2346799999877432 12 22222 23455543 344444444442 2457788777
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.17 Score=47.50 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
.++|.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~ 53 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-----KVVV----ADRDAAGGEETVALIRE 53 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHh
Confidence 46899999999999999999998774 2443 36676666655555543
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.3 Score=45.89 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+ ..+.+.++..+.++.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-----~v~~--~~-~~~~~~~~~~~~~~~ 50 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-----LVAI--HY-GNRKEEAEETVYEIQ 50 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----eEEE--Ec-CCCHHHHHHHHHHHH
Confidence 45899999999999999999998874 2443 21 234455555555554
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.25 Score=48.95 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc----ceEEEecCcc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~----~~v~i~~~~~---- 167 (398)
...+.|+||+|.+|.+++..|+..|. .|.+ .++++++++..+.+++... +.. ..+.+..+..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~ 122 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQSKY-SKTQIKTVVVDFSGDIDEGVK 122 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHHHC-CCcEEEEEEEECCCCcHHHHH
Confidence 45899999999999999999999875 2554 3788888888888776421 110 0112221111
Q ss_pred ---cccC--CCcEEEEeCCCCCC---C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ---ELFE--DAEWALLIGAKPRG---P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ---eal~--dADiViitag~~rk---~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+. |.|++|..+|.... + ..+. .+.+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 123 ~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~g~IV~iSS 193 (320)
T PLN02780 123 RIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR--KKGAIINIGS 193 (320)
T ss_pred HHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 2223 45588888876421 1 1111 234555544 344455555553 4566666653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.056 Score=51.61 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Cccc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYE----- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~e----- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....+ .. .. ....++. +-.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~l~~~~~~---~~-~~-~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-----TVYG----AARRVDKMEDLASL---GV-HP-LSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHhC---CC-eE-EEeeCCCHHHHHHHHHHH
Confidence 46899999999999999999998774 2433 35666655432211 01 00 0111211 1111
Q ss_pred --ccCCCcEEEEeCCCCC-CC--CC---chhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 --LFEDAEWALLIGAKPR-GP--GM---ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 --al~dADiViitag~~r-k~--g~---~r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.|++|..+|... .+ .. +-...+..|.. +.+.+.+.+++. ..+.+|+++.
T Consensus 69 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS 133 (273)
T PRK06182 69 IAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ--RSGRIINISS 133 (273)
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 1237899999888642 11 11 12233455543 356666666664 3466777664
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.044 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+||.|+||+|+||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.065 Score=53.84 Aligned_cols=73 Identities=25% Similarity=0.234 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+.+||+|+||+|.+|..++..|..+..-. ..|.++-.+.+..+ -..+. . .+..+..-+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~----~~l~~laS~~saG~----~~~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPV----GELYALASEESAGE----TLRFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCc----eEEEEEEccCcCCc----eEEEC----C--cceEEEeCchhhccCCC
Confidence 45799999999999999999888753311 23333333322111 11111 1 13444333445568999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999764
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.13 Score=48.40 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=66.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--Ccc---
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPY--- 167 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~--- 167 (398)
.+.++|.|+||+|.+|..++..|+..|. .|.+ .+++.+.++....++........ ....++. +..
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-----HVLV----NGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 3457899999999999999999998775 2544 36666666666666653210010 0111110 011
Q ss_pred ----cccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ----ELFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 ----eal~dADiViitag~~r-k~g--~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|.+|.++|... .+- .+.. ..+..|.. +.+.+.+.+.+. ..+.+|+++...
T Consensus 80 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~ss~~ 149 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ--GYGRIIAITSIA 149 (256)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEeech
Confidence 11234689999887532 111 1111 23455544 344444555443 457777777653
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.19 Score=48.48 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+.+.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....+|.... .++. +..| +.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 72 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-----RVVL----GDVDKPGLRQAVNHLRAEG----FDVHGVMCDVRHREEVTH 72 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHHH
Confidence 34799999999999999999999875 2443 3566667766666664321 0111 1111 11
Q ss_pred ------cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ...+.+|+++.
T Consensus 73 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~-~~~g~iv~isS 143 (275)
T PRK05876 73 LADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ-GTGGHVVFTAS 143 (275)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 223457999999886421 1 12222 23455543 444445555453 23567777764
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.26 Score=46.03 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe---cCcccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~ea--- 169 (398)
.+++.|+||+|.+|++++..|+..|. .+.+ ++++.+.++....++. . + .++... ..+++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~-~--~--~~~~~~~~D~~~~~~~~~ 70 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-----RVVV----ADRDAEAAERVAAAIA-A--G--GRAFARQGDVGSAEAVEA 70 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----ecCCHHHHHHHHHHHh-c--C--CeEEEEEcCCCCHHHHHH
Confidence 45899999999999999999998774 2443 3566555554444443 1 1 111111 112222
Q ss_pred --------cCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 --------FEDAEWALLIGAKPRG-P--GMERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 --------l~dADiViitag~~rk-~--g~~r~---dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+.|+||.++|.... + ..+.. ..+..|..- .+.+.+.+++. ..+.+++++-
T Consensus 71 ~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 140 (252)
T PRK06138 71 LVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ--GGGSIVNTAS 140 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc--CCeEEEEECC
Confidence 2478999998886421 1 11222 224445433 34444445543 4566666664
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.042 Score=53.96 Aligned_cols=100 Identities=17% Similarity=0.328 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..+|+.|| .|++|++++..|+..|. .+.+ | |++.. ...+|++.. .++...+.|..++||+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV--~--dr~~~----k~~~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTV--Y--DRTKD----KCKEFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEE--E--eCcHH----HHHHHHHhc------hhhhCCHHHHHhhcCE
Confidence 46999999 79999999999999886 3544 4 45444 345565543 1244568999999999
Q ss_pred EEEeCCCCC----------------CCCCch-hhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q 015897 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKV 218 (398)
Q Consensus 176 Viitag~~r----------------k~g~~r-~dll~~N~~i~~~i~~~i~~~a~p~a~v 218 (398)
||..-+.|- ++|..- .|.-.......+++++.+.. .+++.
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~ 151 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRF 151 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeE
Confidence 998765442 122222 45555556778888888876 35665
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.064 Score=49.47 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.+.......++...... .....+.. + .
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~ 76 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA-----RVAL----IGRGAAPLSQTLPGVPADALR-IGGIDLVDPQAARRAVDEV 76 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC-----eEEE----EeCChHhHHHHHHHHhhcCce-EEEeecCCHHHHHHHHHHH
Confidence 46899999999999999999998875 2433 356655554444444322100 01111111 0 1
Q ss_pred ccccCCCcEEEEeCCC
Q 015897 167 YELFEDAEWALLIGAK 182 (398)
Q Consensus 167 ~eal~dADiViitag~ 182 (398)
.+.+...|+||..+|.
T Consensus 77 ~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 77 NRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHhCCcCEEEECCcc
Confidence 1223468999998764
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.018 Score=54.51 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=44.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cC----ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN----PYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~----~~eal 170 (398)
|+++|+|+ |.+|+++|..|...|. .+.+ +|.++++++....|-.+. .+... ++ ...-+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999999875 3554 577877776434321111 11111 11 22337
Q ss_pred CCCcEEEEeCC
Q 015897 171 EDAEWALLIGA 181 (398)
Q Consensus 171 ~dADiViitag 181 (398)
.++|.++.+-|
T Consensus 65 ~~aD~vva~t~ 75 (225)
T COG0569 65 DDADAVVAATG 75 (225)
T ss_pred CcCCEEEEeeC
Confidence 88999988644
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.16 Score=48.10 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--C-------c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--N-------P 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~-------~ 166 (398)
|++.|+||+|.+|..++..|+..|. .+.+ .+++++.++....++.+.. ... ....++. + -
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~ 70 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI----SSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEA 70 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHH
Confidence 4899999999999999999999875 2443 3677777766666665321 110 0111110 0 0
Q ss_pred ccccCCCcEEEEeCCCC
Q 015897 167 YELFEDAEWALLIGAKP 183 (398)
Q Consensus 167 ~eal~dADiViitag~~ 183 (398)
.+.+..-|++|..+|..
T Consensus 71 ~~~~g~id~li~naG~~ 87 (259)
T PRK08340 71 WELLGGIDALVWNAGNV 87 (259)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 12345789999988864
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.33 Score=44.96 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
+++|.|+||+|.+|..++..|+..|. .+.+ . .+++.+.++....++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-----~v~~--~-~~r~~~~~~~~~~~~~ 51 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-----KVVI--A-YDINEEAAQELLEEIK 51 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHH
Confidence 45899999999999999999998764 2433 1 1555555554444444
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.37 Score=45.12 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEecCc------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINP------ 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~------ 166 (398)
+.++|.|+||+|++|.+++..|+..|. .+.+ ++++.+.++....++.+...... ....+...+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVIL----LGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEE----EeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 456899999999999999999998764 2443 36666666666666654321100 011111001
Q ss_pred -----ccccCCCcEEEEeCCCCC--CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 -----YELFEDAEWALLIGAKPR--GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 -----~eal~dADiViitag~~r--k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|+||..++... .+ ..+.. ..+..|.. ..+.+.+.+.+. +.+.+++++.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~--~~~~iv~~ss 152 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS--PAASLVFTSS 152 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC--CCCEEEEEcc
Confidence 123446899999887532 22 12222 23445544 344444444542 5567777765
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.051 Score=53.99 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-----Ee--cCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~e 168 (398)
|+||.|+||+|+||++++..|+..+. . .+.+ . |..... +....+.+.. +. .++. ++ .+..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~---~v~~--~--~~~~~~--~~~~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-D---AVVV--V--DKLTYA--GNLMSLAPVA-QS-ERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-C---EEEE--E--ecCccc--cchhhhhhcc-cC-CceEEEECCCcChHHHHH
Confidence 46899999999999999999998874 1 1322 2 332111 0011111100 00 0111 11 11123
Q ss_pred ccC--CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHH
Q 015897 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNA 210 (398)
Q Consensus 169 al~--dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~ 210 (398)
.++ +.|+||.+++..... ..........|..-...+.+.+.+
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 344 389999998764221 112345677788777777777765
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.063 Score=45.89 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=43.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|+|++|.+|+.++..+....-+ +++-. +|++..... -.|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~---v~~~~~~~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGA---VDRKPSAKV--GKDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEE---EETTTSTTT--TSBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEE---EecCCcccc--cchhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 58999997799999999999884321 23321 355442111 1333332211122455667778888899998
Q ss_pred EEe
Q 015897 177 LLI 179 (398)
Q Consensus 177 iit 179 (398)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 865
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.25 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++|.|+||+|.+|..++..|++.|.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 56899999999999999999999875
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.3 Score=45.78 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=59.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--CcccccC-C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFE-D 172 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~-d 172 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....+......... ....++. ....++. .
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-----NVIA----GVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 4799999999999999999998874 2433 24444444333322222110110 0111111 1112233 7
Q ss_pred CcEEEEeCCCCC-CCCC--chh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 173 AEWALLIGAKPR-GPGM--ERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 173 ADiViitag~~r-k~g~--~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.|+||..+|... .+.. +.. ..+..|.. +.+.+.+.+.+. ..+.+|++|-
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~SS 132 (257)
T PRK09291 74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVAR--GKGKVVFTSS 132 (257)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEcC
Confidence 999999988652 1111 111 12333433 334444455543 3367777763
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.02 Score=55.80 Aligned_cols=75 Identities=24% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..||+|+||+|+|||||+-.|...+. +.|++.-+ -.+....+++....-..+..........++.+|-
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh----~VIa~Dn~--------ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~ 94 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGH----EVIALDNY--------FTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQ 94 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCC----eEEEEecc--------cccchhhcchhccCcceeEEEeechhHHHHHhhh
Confidence 47999999999999999999998873 23454222 1223333444431112234344445668889999
Q ss_pred EEEeCCC
Q 015897 176 ALLIGAK 182 (398)
Q Consensus 176 Viitag~ 182 (398)
|+..|..
T Consensus 95 IyhLAap 101 (350)
T KOG1429|consen 95 IYHLAAP 101 (350)
T ss_pred hhhhccC
Confidence 9886643
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.053 Score=46.72 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-----------------chhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||+|+|+ |.+|+.++..|+..|+ + .|.|+|-|. ...+++.....|+... |..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~-----~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~- 72 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGV-G-----KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDV- 72 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTT-S-----EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTS-
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCC-C-----ceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cce-
Confidence 358999995 9999999999999987 2 233344432 2344555555555443 322
Q ss_pred eEEEecC------cccccCCCcEEEEeCC
Q 015897 159 EVKIGIN------PYELFEDAEWALLIGA 181 (398)
Q Consensus 159 ~v~i~~~------~~eal~dADiViitag 181 (398)
+++.... ..+.++++|+||.+..
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~d~vi~~~d 101 (135)
T PF00899_consen 73 EVEAIPEKIDEENIEELLKDYDIVIDCVD 101 (135)
T ss_dssp EEEEEESHCSHHHHHHHHHTSSEEEEESS
T ss_pred eeeeeecccccccccccccCCCEEEEecC
Confidence 2332222 2356779999998754
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.043 Score=56.72 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..+|+|+|+ |.+|..++..|...|.. .|.+ .+++.++++..+.++.... + ...+..+.+.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~~~------i-~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGGEA------V-KFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCCeE------e-eHHHHHHHHhhCCE
Confidence 469999995 99999999999887752 2444 3677777666665543211 1 11245678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
||.+.+.+. |-.+ .+..+....--....+++-+++|-|+=
T Consensus 244 Vi~aT~s~~-~ii~------------~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPH-PIVS------------KEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCC-ceEc------------HHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 999866542 1011 111122211101246899999997763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.055 Score=52.01 Aligned_cols=112 Identities=8% Similarity=0.014 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Cccccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELF--- 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal--- 170 (398)
+++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++... +..... ....++. +..+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-----~Vi~----~~r~~~~~~~l~----~~~~~~-~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-----RVFA----TCRKEEDVAALE----AEGLEA-FQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHH----HCCceE-EEccCCCHHHHHHHHHHH
Confidence 35799999999999999999998774 2443 356666554222 111000 0111111 000111
Q ss_pred -----CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 -----EDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 -----~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
...|++|..+|.... + ..+. ...+..|.. ..+.+.+.+.+. ..+.||+++-
T Consensus 70 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~--~~g~iv~isS 135 (277)
T PRK05993 70 LELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ--GQGRIVQCSS 135 (277)
T ss_pred HHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc--CCCEEEEECC
Confidence 256999998876421 1 1111 234555543 356666667663 3567777764
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.21 Score=54.68 Aligned_cols=92 Identities=23% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-CCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (398)
+++||+||| .|.+|..++..|...|. .|.. + |++.... .+.++ . +....+..+.+ ++|
T Consensus 51 ~~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~--~--dr~~~~~--~A~~~-----G----v~~~~d~~e~~~~~a 109 (667)
T PLN02712 51 TQLKIAIIG-FGNYGQFLAKTLISQGH-----TVLA--H--SRSDHSL--AARSL-----G----VSFFLDPHDLCERHP 109 (667)
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHH--HHHHc-----C----CEEeCCHHHHhhcCC
Confidence 456999999 59999999999988763 2432 3 4543321 22221 1 12233444434 579
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHH-HhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN-AVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~-~~a~p~a~vIvvtN 223 (398)
|+||++.. ...+.++.+.+. .+..++++|+.++.
T Consensus 110 DvViLavP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 110 DVILLCTS----------------IISTENVLKSLPLQRLKRNTLFVDVLS 144 (667)
T ss_pred CEEEEcCC----------------HHHHHHHHHhhhhhcCCCCeEEEECCC
Confidence 99999843 123444444443 22257888888864
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.28 Score=45.63 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ ++++.+.+.....++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-----EVIV----VDICGDDAAATAELVE 51 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999998874 2433 3566666655555554
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=55.93 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=58.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
.||+||| .|.+|..++..|...+... .|.. .|+++++++. +.++. . .....++..++++++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~---~V~~----~d~~~~~~~~-a~~~g-----~--~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAR---EVVA----VDRRAKSLEL-AVSLG-----V--IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCC---EEEE----EECChhHHHH-HHHCC-----C--CCcccCCHHHHhcCCCEE
Confidence 5899999 5999999999999877411 2433 3666666542 22211 1 001223455678999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|++... ..+.++.+.+.++..++.+|+.++.
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~s 98 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVGS 98 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 998541 2345555566655446666655543
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.26 Score=46.83 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-HHHHHHHHhhhcC-CC-cceEEEec-Cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLF-PL-LREVKIGI-NP----Y 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-l~g~a~DL~d~~~-~~-~~~v~i~~-~~----~ 167 (398)
.++|.|+||+|.+|.+++..|+..+-. .+.+ .+++++. ++..+.++..... .. .....++. +. .
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~----~V~~----~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~ 79 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPA----RVVL----AALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVI 79 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCC----eEEE----EeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHH
Confidence 468999999999999999999987521 2443 2566554 6666666654210 00 00111111 00 1
Q ss_pred cc---cCCCcEEEEeCCCCCCCCC---ch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 EL---FEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ea---l~dADiViitag~~rk~g~---~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+. ..+.|++|..+|....... +. .+.+..|.. +.+.+.+.+.+. ..+.+++++-
T Consensus 80 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~--~~~~iv~isS 146 (253)
T PRK07904 80 DAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ--GFGQIIAMSS 146 (253)
T ss_pred HHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 11 1379999987776422111 11 123566643 335566677664 3466666653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.48 Score=44.57 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (398)
.+++.|+||+|.+|..++..|+..|. .|.+ .+++.+.++....++.+.. +. .++. +..|
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLI----VARDADALAQARDELAEEF-PE-REVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998875 2443 3566677776666665431 11 1111 1111
Q ss_pred ----cccccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 ----PYELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ----~~eal~dADiViitag~~r-k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
-.+.+...|+||.++|... .+ ..+.. ..+..|.. +.+.+.+.+.+. +.+.+|+++-
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 1233556899999887531 11 11222 22444433 445555555553 4566776664
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.32 Score=46.45 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~ 56 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-----KVAI----LDRNQEKAEAVVAEIKA 56 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHh
Confidence 36899999999999999999998875 2443 35666666656665543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.093 Score=55.40 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--- 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--- 171 (398)
++.+|++|| .|.+|..++..|+..|. ++.+ + |++.++.+..+....... . ..+....+..+..+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V--~--NRt~~k~~~l~~~~~~~G--a-~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-----PISV--Y--NRTTSKVDETVERAKKEG--N-LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEE--E--CCCHHHHHHHHHhhhhcC--C-cccccCCCHHHHHhcCC
Confidence 467899999 79999999999999885 3544 4 677676654433211100 0 11122233344443
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+|+||++-.. .+.++++...+-....++.++|..||-
T Consensus 72 ~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 72 KPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 49999987432 233444433333333577788888775
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.065 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++||+|+||+|.+|..++..|.....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 456999999999999999999988754
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.18 Score=54.95 Aligned_cols=97 Identities=7% Similarity=-0.002 Sum_probs=60.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
+..|||.|+||+|++|++++..|...+. ++.+..- |+.. .+....++.+ .+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~~--~l~d--~~~v~~~i~~-------------------~~p 429 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGKG--RLED--RSSLLADIRN-------------------VKP 429 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeecc--cccc--HHHHHHHHHh-------------------hCC
Confidence 3456999999999999999999987763 2322111 1110 0111111111 157
Q ss_pred cEEEEeCCCCCCCC-----CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE
Q 015897 174 EWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (398)
Q Consensus 174 DiViitag~~rk~g-----~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (398)
|+||.+++....+. .+..+....|+.-...+++.+.+. ++.++++
T Consensus 430 d~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~---g~~~v~~ 479 (668)
T PLN02260 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN---GLLMMNF 479 (668)
T ss_pred CEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc---CCeEEEE
Confidence 99999987643221 234567888999999999999885 3345555
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.27 Score=46.08 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-----KVVL----ASRRVERLKELRAEIE 54 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998774 2433 3566676665555553
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.42 Score=44.58 Aligned_cols=114 Identities=24% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ + .+++.+.++....++.... .++. +..| +.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~-----~v~~-~--~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 71 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY-----DIAV-N--YARSRKAAEETAEEIEALG----RKALAVKANVGDVEKIKE 71 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE-E--cCCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHH
Confidence 35899999999999999999999874 2433 1 2455566655555554321 1111 1111 111
Q ss_pred -------ccCCCcEEEEeCCCCC-CCC--Cchhh---hHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPR-GPG--MERAG---LLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~r-k~g--~~r~d---ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|+||..+|... .|- .+..+ .+..|. .+.+.+.+.+.+ ...+.++++|.
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~g~iv~~sS 141 (250)
T PRK08063 72 MFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEK--VGGGKIISLSS 141 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCeEEEEEcc
Confidence 1235899999877531 221 11111 233443 344555555544 24567777765
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.4 Score=45.02 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.+++.|+||+|.+|.+++..|+..|.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 347999999999999999999998875
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.11 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~ 119 (398)
|+++.|+||+|.+|..++..|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 468999999999999999999876
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.23 Score=47.75 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=46.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecC--cc------c
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGIN--PY------E 168 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~--~~------e 168 (398)
.+.|+| +|.+|.+++..|. .|. .|.+ .+++++.++....++.+..... .....++.. -. +
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGK-----KVLL----ADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 445556 5899999999985 442 2443 3566666665555554321000 011112110 00 1
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHH
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQI 200 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i 200 (398)
.+...|++|..+|... ...+-...+..|..-
T Consensus 73 ~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g 103 (275)
T PRK06940 73 TLGPVTGLVHTAGVSP-SQASPEAILKVDLYG 103 (275)
T ss_pred hcCCCCEEEECCCcCC-chhhHHHHHHHhhHH
Confidence 2346899999988642 112223445556443
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.39 Score=45.20 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYE------ 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~e------ 168 (398)
.++|.|+||+|.+|..++..|+..|.- .|.+ .+++.+.+.....++....... ...+.++ +.+
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~--~~~~~~~~~ 75 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAA----GLVI----CGRNAEKGEAQAAELEALGAKAVFVQADLS--DVEDCRRVV 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCC----eEEE----EcCCHHHHHHHHHHHHhcCCeEEEEEccCC--CHHHHHHHH
Confidence 358999999999999999999988751 1433 3555555554444442211000 0011111 121
Q ss_pred -----ccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -----LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -----al~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.|++|.++|...... .+.. ..+..|.. +++...+.+.+. ...+.+++++.
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~g~iv~~ss 144 (260)
T PRK06198 76 AAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRR-KAEGTIVNIGS 144 (260)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 1246899999988653211 1222 22444433 334444555543 23456666664
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.33 Score=45.20 Aligned_cols=116 Identities=18% Similarity=0.102 Sum_probs=65.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCccc------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYE------ 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~e------ 168 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ .+++++.++....++.....+. .....+...+.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA-----TVIL----VARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFA 77 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHH
Confidence 5899999999999999999998764 2443 3677777776666554321011 111222111111
Q ss_pred -----cc-CCCcEEEEeCCCC--CCCCC--chh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -----LF-EDAEWALLIGAKP--RGPGM--ERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -----al-~dADiViitag~~--rk~g~--~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+ ...|+||.++|.. ..|-. +.. ..+..|.- +.+.+.+.+.+. ..+.+++++.
T Consensus 78 ~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~~ss 147 (239)
T PRK08703 78 ATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQS--PDASVIFVGE 147 (239)
T ss_pred HHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CCCEEEEEec
Confidence 12 4679999988853 22221 122 23444543 455555555553 4566666654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.3 Score=48.72 Aligned_cols=116 Identities=12% Similarity=-0.047 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--Cc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NP------ 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~------ 166 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++++.++....++.+...... ....++. +-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 35899999999999999999999875 2443 36777888777666654221100 0111211 00
Q ss_pred -ccccCCCcEEEEeCCCCCC-C-C-Cc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 -YELFEDAEWALLIGAKPRG-P-G-ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 -~eal~dADiViitag~~rk-~-g-~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+.+...|++|.++|.... + . .+ -.+.+..|.- +.+...+.+.+. ..+.+|+++
T Consensus 78 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~--~~g~iV~is 142 (330)
T PRK06139 78 AASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ--GHGIFINMI 142 (330)
T ss_pred HHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc--CCCEEEEEc
Confidence 1112567999999886421 1 1 11 1123444432 344455555553 356777665
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.34 Score=45.69 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Cccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++++.++..+.++...... .++.. .. .+.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~----~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~ 75 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVAL----ADLDAALAERAAAAIARDVAG--ARVLAVPADVTDAASVAA 75 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhccCC--ceEEEEEccCCCHHHHHH
Confidence 35799999999999999999998875 2443 367777777677666542101 11111 11 1111
Q ss_pred -------ccCCCcEEEEeCCCCC-CC-C-Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPR-GP-G-MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~r-k~-g-~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|... .+ . .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 76 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 146 (260)
T PRK07063 76 AVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER--GRGSIVNIAST 146 (260)
T ss_pred HHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--CCeEEEEECCh
Confidence 2346899999888542 11 1 1222 22444443 344555555542 45777777643
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.038 Score=52.48 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHH
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~ 145 (398)
+.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~l 45 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-----RVAV----LDKSAAGLQEL 45 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH
Confidence 346899999999999999999998875 2443 36666655433
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.1 Score=49.89 Aligned_cols=116 Identities=9% Similarity=0.100 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec--Cccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .. .....++. ...+
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-----~v~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~ 87 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-----KVCI----VDLQDDLGQNVCDSLGGEP-NVCFFHCDVTVEDDVSRAVDF 87 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHhcCCC-ceEEEEeecCCHHHHHHHHHH
Confidence 35899999999999999999998874 2443 2555555554444442210 00 00111111 0111
Q ss_pred ---ccCCCcEEEEeCCCCCCC-C----Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 ---LFEDAEWALLIGAKPRGP-G----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 ---al~dADiViitag~~rk~-g----~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|....+ + .+. ...+..|.. +++...+.+.+. ..+.+++++-
T Consensus 88 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~ii~isS 155 (280)
T PLN02253 88 TVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL--KKGSIVSLCS 155 (280)
T ss_pred HHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--CCceEEEecC
Confidence 123689999998864321 1 111 233555533 344555555542 4566777764
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.2 Score=52.77 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~--------- 165 (398)
..++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++....... .....++..
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 385 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGA-----EVVA----SDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEW 385 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 36899999999999999999998875 2443 3677777776666665321000 001111110
Q ss_pred cccccCCCcEEEEeCCCCCCC---CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 PYELFEDAEWALLIGAKPRGP---GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~---g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
-.+.+...|++|..+|..... ..+.. ..+..|. .+.+.+.+.+.+. +.++.||+++-
T Consensus 386 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS 452 (582)
T PRK05855 386 VRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVAS 452 (582)
T ss_pred HHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 011233579999998875321 11221 2344553 3445555566664 34577777764
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.29 Score=47.65 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~---------~~ 166 (398)
+++.|+||+|.+|.+++..|+..|. .+.+ .+.+.+.+.++.....+.+..... .....++. ..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~-----~Vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA-----DVAI--SYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-----EEEE--ecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 5899999999999999999999875 2443 333333333433332222211000 00011110 01
Q ss_pred ccccCCCcEEEEeCCCCC--CC--CCchh---hhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPR--GP--GMERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~r--k~--g~~r~---dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|... .+ ..+.. ..+..|+.-...+.+.+..+...++.||++|--
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~ 187 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI 187 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence 123456799999887532 11 12222 335566544434444433321235677777743
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.071 Score=53.86 Aligned_cols=107 Identities=10% Similarity=0.060 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CC-CcceEE-----Eec--C
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVK-----IGI--N 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~-~~~~v~-----i~~--~ 165 (398)
++++|.|+||+|++|++++..|+..|. .|.+ + .++.+.++.. .++.... .. ....+. ++. .
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~-~---~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRI-A---VDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEE-E---eCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 356999999999999999999999875 2433 1 2232333221 2221100 00 000111 111 1
Q ss_pred cccccCCCcEEEEeCCCCCCCCC--chhhhHHHHHHHHHHHHHHHHHh
Q 015897 166 PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g~--~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
..++++++|.|+.+++.....+. ....+...|..-...+.+.+.+.
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 23567889999987764322221 12344556777777788777764
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.15 Score=47.28 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.49 Score=44.65 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecC-----ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGIN-----PYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~-----~~e 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++....... .....++.. ..+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHL----VARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46899999999999999999998775 2443 3566676666555555321000 001111110 112
Q ss_pred ccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 al~dADiViitag~~r-k~g--~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|.++|... .+- .+.. ..+..|.. +.+.+.+.+.+. ..+.+++++.
T Consensus 78 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 78 EAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 3467899999887642 221 1222 22444443 455555566653 3567776664
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.085 Score=47.87 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=45.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc----------------hhhHHHHHHHHhhhcCCCcceEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----------------LQALEGVAMELEDSLFPLLREVK 161 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~----------------~~~l~g~a~DL~d~~~~~~~~v~ 161 (398)
||.|+|+ |.+|+.++..|+..|+- .++|+|.|.- ..+++..+..|+... |.. ++.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg------~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v-~i~ 71 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG------NLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFV-KIE 71 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC------eEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCC-EEE
Confidence 6899995 99999999999999872 2334565541 233444444444332 221 221
Q ss_pred Ee-----c-CcccccCCCcEEEEeCC
Q 015897 162 IG-----I-NPYELFEDAEWALLIGA 181 (398)
Q Consensus 162 i~-----~-~~~eal~dADiViitag 181 (398)
.. . +..+.++++|+||.+..
T Consensus 72 ~~~~~~~~~~~~~~l~~~DlVi~~~d 97 (174)
T cd01487 72 AINIKIDENNLEGLFGDCDIVVEAFD 97 (174)
T ss_pred EEEeecChhhHHHHhcCCCEEEECCC
Confidence 11 1 12356889999998843
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.086 Score=51.08 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=60.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc----ccCCCc
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LFEDAE 174 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----al~dAD 174 (398)
|.|+||+|++|++++..|...+.. .+.+ ++.....+.+. ++.... ....+........ .+.+.|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~~--~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILV--VDNLRDGHKFL----NLADLV--IADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEE--EecCCCchhhh----hhhhee--eeccCcchhHHHHHHhhccCCCC
Confidence 579999999999999999988741 1322 22111111111 111000 0001110000111 235899
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||.+++.......+.......|..-...+.+.+.+. + ..+|.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~v~~SS 114 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-G--IPFIYASS 114 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEcc
Confidence 9999987643222344556778888888888888775 2 35666653
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.46 Score=44.09 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.095 Score=48.83 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
||+.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..+.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~ 44 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-----KVTL----VGARRDDLEVAAKEL 44 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 4799999999999999999998774 2443 366666666554443
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.5 Score=43.63 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+.++|.|+||+|.+|.+++..|+..|.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 3456999999999999999999998874
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.4 Score=45.69 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-----AVMI----VGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999999875 2543 2566566665555554
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.4 Score=45.21 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.078 Score=49.36 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE--ecCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (398)
.+||.|||| |.+|...+..|+..|- .|.+ +.-+..+ .+. ++.+.. .+.. ..-.++++.++
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga-----~V~V--Is~~~~~-~l~----~l~~~~-----~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA-----HIVV--ISPELTE-NLV----KLVEEG-----KIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--EcCCCCH-HHH----HHHhCC-----CEEEEecCCChhhcCCc
Confidence 469999995 9999999999998773 2544 2212211 122 222111 1222 22346789999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC--chhHHHHHHH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNALICLK 234 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP--~d~~t~~~~k 234 (398)
|+||.+-+.+ ..|..|. +..+ .+.++-++.+| ||...+...+
T Consensus 72 dlViaaT~d~-----------elN~~i~----~~a~----~~~lvn~~d~~~~~~f~~Pa~~~ 115 (202)
T PRK06718 72 FLVIAATNDP-----------RVNEQVK----EDLP----ENALFNVITDAESGNVVFPSALH 115 (202)
T ss_pred eEEEEcCCCH-----------HHHHHHH----HHHH----hCCcEEECCCCccCeEEEeeEEE
Confidence 9988875432 2243342 2221 24566667777 5555554433
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=51.95 Aligned_cols=72 Identities=28% Similarity=0.318 Sum_probs=41.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+|+||+|.+|..++..|...+.-. +.|..+-.+.+. +...++. . .++.+..-+..+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~----~~l~~l~s~~~~----g~~l~~~----g--~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV----DKLRLLASARSA----GKELSFK----G--KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc----ceEEEEEccccC----CCeeeeC----C--ceeEEeeCCHHHHcCCCE
Confidence 5799999999999999999998754311 122222122211 1111111 1 233333223356789999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 999865
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.087 Score=52.68 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
...+|+|+|+ |..|...+..+.. .++ . .|.+ + +++.++++..+.++++.. + ..+....+..+++.+|
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~-~---~V~v--~--~R~~~~a~~l~~~~~~~~-g--~~v~~~~d~~~al~~a 198 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPI-R---EVRV--W--ARDAAKAEAYAADLRAEL-G--IPVTVARDVHEAVAGA 198 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC-C---EEEE--E--cCCHHHHHHHHHHHhhcc-C--ceEEEeCCHHHHHccC
Confidence 3569999995 9999988777764 332 2 3554 3 788889988888776422 2 2344556667889999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+.+.
T Consensus 199 DiVi~aT 205 (330)
T PRK08291 199 DIIVTTT 205 (330)
T ss_pred CEEEEee
Confidence 9998764
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=48.20 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc-------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------- 168 (398)
.+++.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... . .....++ +.+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~-----~v~~----~~~~~~~~~~~~~~~~~~~-~-~~~~D~~--~~~~~~~~~~ 72 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA-----IVGL----HGTRVEKLEALAAELGERV-K-IFPANLS--DRDEVKALGQ 72 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCce-E-EEEccCC--CHHHHHHHHH
Confidence 46899999999999999999998874 2433 2556566655444432100 0 0011111 111
Q ss_pred ----ccCCCcEEEEeCCCCCC-CC--C---chhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 ----LFEDAEWALLIGAKPRG-PG--M---ERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 ----al~dADiViitag~~rk-~g--~---~r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+...|+||.++|.... +- . +-...+..|..- ++.+.+.+.+ ...+.+|+++...
T Consensus 73 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~iv~~sS~~ 141 (245)
T PRK12936 73 KAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMR--RRYGRIINITSVV 141 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHH--hCCCEEEEECCHH
Confidence 24568999999876421 11 1 112334555443 3344444443 2456777777543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.35 Score=45.88 Aligned_cols=119 Identities=9% Similarity=-0.049 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++........ ....++. .
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-----~vv~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-----TIVF----NDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999998874 2443 25666666655555543210000 0111110 0
Q ss_pred cccccCCCcEEEEeCCCCC-CC-CCchh----hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 166 PYELFEDAEWALLIGAKPR-GP-GMERA----GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 166 ~~eal~dADiViitag~~r-k~-g~~r~----dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
..+.+..-|++|.++|... .+ ..... ..+..|.. +.+.+.+.+.+ ...+.||+++...
T Consensus 81 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~isS~~ 148 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK--KGHGKIINICSMM 148 (265)
T ss_pred HHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh--cCCcEEEEEcCcc
Confidence 1122345799999887532 11 11111 22334432 34445555555 2467777777643
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.05 Score=50.99 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|++|.|+||+|.+|+.++..|+..|.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 45799999999999999999998875
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=56.65 Aligned_cols=116 Identities=17% Similarity=0.111 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec--Cccc-----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYE----- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~e----- 168 (398)
++|.|+||+|.||..++..|+..|. .|.+ .|++.+.++....++.... .. .....++. ...+
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-----~Vvl----~~r~~~~~~~~~~~l~~~~-~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-----CVVL----ADLDEEAAEAAAAELGGPD-RALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHHhccC-cEEEEEecCCCHHHHHHHHHHH
Confidence 6899999999999999999998874 2443 3677676665555554310 00 00111111 0011
Q ss_pred --ccCCCcEEEEeCCCCCCC---CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 --LFEDAEWALLIGAKPRGP---GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 --al~dADiViitag~~rk~---g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.|+||.++|..... ..+.. ..+..| ..+++...+.+++. ..++.+|+++-
T Consensus 493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~-~~~g~iV~vsS 558 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQ-GLGGSIVFIAS 558 (681)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 134689999998864321 11111 123334 33445555555553 23467776664
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.13 Score=53.94 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc---cccCCCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY---ELFEDAE 174 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~---eal~dAD 174 (398)
+|+||| .|.+|.+++..|+..|. +|.+ + |++.++++....+.... ..+....+.. +.++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v--~--drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSV--Y--NRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999885 3543 3 67777766444321100 0111222222 2446789
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC--CchhH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTN 228 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~ 228 (398)
+|+++... .+.+.++...+..+..++.+||..+| |.++.
T Consensus 66 vIil~v~~---------------~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~ 106 (467)
T TIGR00873 66 KIMLMVKA---------------GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTE 106 (467)
T ss_pred EEEEECCC---------------cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence 88887421 13444444555554457888999987 45543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.073 Score=53.89 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=63.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d 172 (398)
.++.++.|+||+|++|.+++..|+..+.. ..+.++|.-.........-.++......+ ..++.-......++.+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 34679999999999999999999998852 23333433221122221212110000000 0122222346789999
Q ss_pred CcEEEEeCCCC--CCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 173 AEWALLIGAKP--RGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 173 ADiViitag~~--rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+ .|++++..+ +..-..|......|++--+.+.+.+.+.
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 9 666654332 2222246666777887777788777774
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.081 Score=52.76 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
...+++||| +|.+|...+..++. .++ . .|.+ .+++.++++..+.++.+.. + .++....+..+++.+|
T Consensus 126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~-~---~v~v----~~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~a 193 (325)
T PRK08618 126 DAKTLCLIG-TGGQAKGQLEAVLAVRDI-E---RVRV----YSRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEA 193 (325)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCc-c---EEEE----ECCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcC
Confidence 357899999 59999887776654 332 2 2544 3788888888887776421 2 2344455667889999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+.+-
T Consensus 194 DiVi~aT 200 (325)
T PRK08618 194 DIIVTVT 200 (325)
T ss_pred CEEEEcc
Confidence 9999864
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.25 Score=46.79 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc----hhh---HHHHHHHHhhhcCCCcceEEEecCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQA---LEGVAMELEDSLFPLLREVKIGINPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~----~~~---l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (398)
-.||.|+|| |.+|..++..|...|+-. +.|.+ + |++ .++ +.....++.+.. .. .. ...+..+
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~i--v--dr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~ 93 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIVV--V--DSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKE 93 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEEE--E--eCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHH
Confidence 369999995 999999999999887631 02443 4 554 232 222223332211 10 01 1123458
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+++++|++|-+.+ +|+-. .+..+.+ +++.+|+.++||...
T Consensus 94 ~l~~~dvlIgaT~----~G~~~-----------~~~l~~m----~~~~ivf~lsnP~~e 133 (226)
T cd05311 94 ALKGADVFIGVSR----PGVVK-----------KEMIKKM----AKDPIVFALANPVPE 133 (226)
T ss_pred HHhcCCEEEeCCC----CCCCC-----------HHHHHhh----CCCCEEEEeCCCCCc
Confidence 8899999998754 34311 1222222 256777788899643
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.52 Score=44.56 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-Eec--Ccc------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI--NPY------ 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~--~~~------ 167 (398)
+.+.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.... +- .++. +.. .++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA-----SVAI----CGRDEERLASAEARLREKF-PG-ARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998875 2443 3667777776666665321 10 1111 111 112
Q ss_pred -----cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 -----ELFEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 -----eal~dADiViitag~~rk-~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.... + ..+.. ..+..| ....+.+.+.+++. ..+.|++++-
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 146 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS--AAASIVCVNS 146 (265)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--CCcEEEEecc
Confidence 224567999999886431 1 11111 122333 33455666666653 3567777664
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.17 Score=47.25 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 346899999999999999999998874
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.65 Score=43.79 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Ccc------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY------ 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~------ 167 (398)
.+|.|+||+|.+|.+++..|+..|. .+.+. . ..+.+.++....++.... .++.+ .. .+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~-----~V~~~-~--~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~ 70 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF-----DIGIT-W--HSDEEGAKETAEEVRSHG----VRAEIRQLDLSDLPEGAQA 70 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE-e--CCChHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHH
Confidence 4799999999999999999999875 24431 1 334445554445544221 11111 11 111
Q ss_pred -----cccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -----eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+. ...+..|.. +++...+.+.+. ..++.+|+++.-
T Consensus 71 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~g~ii~isS~ 141 (256)
T PRK12743 71 LDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQ-GQGGRIINITSV 141 (256)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEEEeec
Confidence 123457999998876421 1 1111 123444433 334444444442 235777777753
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.5 Score=44.49 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998875
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.097 Score=51.75 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=55.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
....+++||| +|..|...+..++.-.-+. +|.+ + +++.++++..+.++.+.. ..++.+..+..+++.+|
T Consensus 115 ~da~~l~iiG-aG~QA~~~~~a~~~v~~i~---~v~v--~--~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 115 KNVENFTIIG-SGFQAETQLEGMASVYNPK---RIRV--Y--SRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDA 183 (301)
T ss_pred cCCcEEEEEC-CcHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcC
Confidence 3467999999 5999998877776543222 3544 3 788899998988887532 22566667889999999
Q ss_pred cEEEEe
Q 015897 174 EWALLI 179 (398)
Q Consensus 174 DiViit 179 (398)
|+|+.+
T Consensus 184 DIV~ta 189 (301)
T PRK06407 184 DTITSI 189 (301)
T ss_pred CEEEEe
Confidence 999875
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.63 Score=43.41 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=48.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-c--Ccc------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY------ 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~------ 167 (398)
+++.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... +. .++.+. . .+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-----DLAL----CARRTDRLEELKAELLARY-PG-IKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEEcCCCCHHHHHHH
Confidence 4799999999999999999998874 2443 3566676666666554321 10 112111 1 111
Q ss_pred -----cccCCCcEEEEeCCCC
Q 015897 168 -----ELFEDAEWALLIGAKP 183 (398)
Q Consensus 168 -----eal~dADiViitag~~ 183 (398)
+.+...|+||..+|..
T Consensus 72 ~~~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 2345689999998865
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.35 Score=46.04 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-----NVAV----ASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 3566666655555554
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.098 Score=50.07 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=59.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Ccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~~ 167 (398)
++|.|+||+|.+|.+++..|+..+. .|.+ .+++.+.++.....+.... .. ....++. ...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD-----RVVA----TARDTATLADLAEKYGDRL-LP-LALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhccCCe-eE-EEccCCCHHHHHHHHHHHH
Confidence 4799999999999999999998774 2433 3566555543322211110 00 0111110 011
Q ss_pred cccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEEC
Q 015897 168 ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 168 eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+.+...|.||.++|.... + ..+. .+.+..|.. +.+.+.+.+++. ..+.+|+++
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~vs 135 (275)
T PRK08263 73 EHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ--RSGHIIQIS 135 (275)
T ss_pred HHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 223467999999886521 1 1111 233455544 355555556663 344566665
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.15 Score=47.61 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=56.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Ccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~~ 167 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ ++++++.++....++.... . .....+.. .-.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA-----RVAI----TGRDPASLEAARAELGESA-L-VIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHhCCce-E-EEEecCCCHHHHHHHHHHHH
Confidence 5899999999999999999998874 2433 3566555544433331100 0 00011110 001
Q ss_pred cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHHHHHHHHHHHHH
Q 015897 168 ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQIFAEQGKALNA 210 (398)
Q Consensus 168 eal~dADiViitag~~rk-~--g~~r~---dll~~N~~i~~~i~~~i~~ 210 (398)
+.+...|+||..+|.... + ..+.. ..+..|..-...+.+.+..
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 124 (249)
T PRK06500 76 EAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLP 124 (249)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223568999998876421 1 11222 3456666555555555543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=50.30 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=55.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-CCcEEE
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dADiVi 177 (398)
|+|.||+|+||++|...|...+. +|.+ +-++..+.+..... .+..-....+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~i----ltR~~~~~~~~~~~----------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTI----LTRRPPKASQNLHP----------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEE----EEcCCcchhhhcCc----------cccccchhhhcccCCCCEEE
Confidence 57999999999999999988764 3543 23444443321110 1111111122222 799999
Q ss_pred EeCCCCC--CCC--CchhhhHHHHHHHHHHHHHHHHHh
Q 015897 178 LIGAKPR--GPG--MERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 178 itag~~r--k~g--~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
..+|.|- +.. .....+....+..-+.+.+.|.+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~ 99 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAAS 99 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999872 212 223445555566777777777754
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=49.36 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++++.++....++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 50 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-----RVAV----LERSAEKLASLRQRF 50 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 46899999999999999999998875 2443 366666665544443
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.51 Score=43.85 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
..++.|+||+|.+|..++..|+..|. .+.+ .++++++++....++.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-----KLAL----IDLNQEKLEEAVAECG 50 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999998764 2433 3566666665555554
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.28 Score=48.52 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-----hhHHHHHHHHhhhcCCC-cceEEEec--Ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-----QALEGVAMELEDSLFPL-LREVKIGI--NPY 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-----~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~ 167 (398)
.+||.|+||+|++|++++..|+..|. .|.+ + +++. +.++....+........ .....++. ...
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 76 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY-----EVHG--I--IRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLR 76 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC-----EEEE--E--ecccccccccchhhhccccccccCceEEEEecCCCHHHHH
Confidence 46899999999999999999998875 2432 2 2221 12221111100000000 00111111 112
Q ss_pred cccCC--CcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHh
Q 015897 168 ELFED--AEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 168 eal~d--ADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+.+++ .|+||.+++...... ......+..|+.-...+.+.+.+.
T Consensus 77 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 124 (340)
T PLN02653 77 RWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH 124 (340)
T ss_pred HHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh
Confidence 33443 599999988643221 122334566777777777777775
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.41 Score=45.09 Aligned_cols=117 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~--------- 165 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++..+.++.+...... ....++..
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~-----~vv~----~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46999999999999999999998874 2433 35666666666666654211100 01111110
Q ss_pred cccccCCCcEEEEeCCCCCC--CCCchhh---hHHHHHHHH----HHHHHHHHHhcCCCeEEEEECC
Q 015897 166 PYELFEDAEWALLIGAKPRG--PGMERAG---LLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk--~g~~r~d---ll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..+.+...|++|.++|.... ...+..+ .+..|..-. +.+.+.+.+. ..+.+|+++-
T Consensus 82 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS 146 (255)
T PRK06113 82 ALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITS 146 (255)
T ss_pred HHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 11223457999998875321 1222222 245554433 3333334342 3456666654
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.57 Score=43.69 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=32.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
++|.|+||+|.+|+.++..|+..+. .+.+. ..++.+.++....++.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-----~v~~~---~~~~~~~~~~~~~~~~ 48 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-----SVGIN---YARDAAAAEETADAVR 48 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-----EEEEE---eCCCHHHHHHHHHHHH
Confidence 4899999999999999999998774 24331 1345566665555554
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=52.01 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--CcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (398)
++||+|+||+|.||+.++..|..... .- ..+.++-+.++..+ .+.++..-. ..+-. -+..+++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~---~~~~~~AS~rSaG~---~~~~f~~~~------~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PF---EELVLLASARSAGK---KYIEFGGKS------IGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-Cc---ceEEEEecccccCC---ccccccCcc------ccCccccccccccccC
Confidence 46899999999999999999988532 21 11223323332111 113322211 11111 466778899
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|+|++++|
T Consensus 68 Divf~~ag 75 (334)
T COG0136 68 DIVFFAAG 75 (334)
T ss_pred CEEEEeCc
Confidence 99999876
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.53 Score=43.92 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=45.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-e--cCc-------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G--INP------- 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~--~~~------- 166 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+..+....++.... .++.. . ..+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 68 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-----NVVV----NDLGEAGAEAAAKVATDAG----GSVIYLVADVTKEDEIADM 68 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHHH
Confidence 4799999999999999999998775 2443 3566555554444443211 11111 1 111
Q ss_pred ----ccccCCCcEEEEeCCCC
Q 015897 167 ----YELFEDAEWALLIGAKP 183 (398)
Q Consensus 167 ----~eal~dADiViitag~~ 183 (398)
.+.+.+.|+||..++..
T Consensus 69 ~~~~~~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 69 IAAAAAEFGGLDILVNNAGIQ 89 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 22356789999988753
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=51.28 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
+..+|+||| +|.+|...+..++. .+. . .|.+ + +++.++++..+.++.+.. ..+....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~-~---~V~V--~--~Rs~~~a~~~a~~~~~~g----~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI-K---QVRV--W--GRDPAKAEALAAELRAQG----FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC-C---EEEE--E--cCCHHHHHHHHHHHHhcC----CceEEeCCHHHHHhcC
Confidence 457999999 59999999886665 443 2 2544 3 788888888888876421 1344555677899999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+.+-
T Consensus 191 DIVi~aT 197 (314)
T PRK06141 191 DIISCAT 197 (314)
T ss_pred CEEEEee
Confidence 9997653
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.16 Score=50.55 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCce-EEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i-~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dA 173 (398)
.++|+| ||+|.||..+...|-.++. ++ .|+|+.+.. +..| +.. .+ ..++.+..-..+++++.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f-----pv~~l~l~~s~~---~s~g------k~i-~f~g~~~~V~~l~~~~f~~v 66 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL-----EIEQISIVEIEP---FGEE------QGI-RFNNKAVEQIAPEEVEWADF 66 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC-----chhheeeccccc---ccCC------CEE-EECCEEEEEEECCccCcccC
Confidence 468999 9999999999998888765 22 233443220 1111 111 12 23555655567799999
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|++++ +|
T Consensus 67 Dia~f-ag 73 (322)
T PRK06901 67 NYVFF-AG 73 (322)
T ss_pred CEEEE-cC
Confidence 99999 65
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.1 Score=51.69 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=57.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch--hhHHHHHHHHhhhcCCC-cceEEEec--CcccccC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPL-LREVKIGI--NPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~eal~ 171 (398)
|||.|+||+|+||++++..|+..|. .+++ . +|... ...+ ...++.... .. .....++. +..++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-----~~v~-~--~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~ 70 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-----DSVV-N--VDKLTYAGNLE-SLADVSDSE-RYVFEHADICDRAELDRIFA 70 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-----CeEE-E--ecCCCccchHH-HHHhcccCC-ceEEEEecCCCHHHHHHHHH
Confidence 4899999999999999999998764 1221 1 23211 1111 111111000 00 00111111 1123343
Q ss_pred --CCcEEEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 172 --DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 172 --dADiViitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+.|+||.+++.... +.....++...|+.-...+.+.+.++
T Consensus 71 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 71 QHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred hcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 47999999876421 12233567888888888888887763
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.31 Score=45.10 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
..+|.|+||+|.+|+.++..|+..|. .|.+ .+++++.++....++.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-----QVCI----NSRNENKLKRMKKTLS 50 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999998775 2433 3566666654444443
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.11 Score=56.59 Aligned_cols=114 Identities=20% Similarity=0.128 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch--hhHHHHHHHHhhhcCCCcceEEEe-cC--cc--
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--PY-- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~-- 167 (398)
+++||.|+||+|+||++++..|+..+. + ..|. .+ |+.. +.+. .+.... . ...+.+. .| +.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~-~--~~V~--~~--d~~~~~~~~~----~l~~~~-~-~~~v~~~~~Dl~d~~~ 71 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP-D--YKIV--VL--DKLDYCSNLK----NLNPSK-S-SPNFKFVKGDIASADL 71 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC-C--CEEE--EE--eCCCccchhh----hhhhcc-c-CCCeEEEECCCCChHH
Confidence 467999999999999999999998642 1 0232 12 3321 1111 111000 0 0112111 11 11
Q ss_pred -c-c--cCCCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 168 -E-L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 168 -e-a--l~dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+ . ..+.|+||.+++...... ....+....|+.-...+.+.+++. +.-..+|.+|
T Consensus 72 ~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~S 131 (668)
T PLN02260 72 VNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVS 131 (668)
T ss_pred HHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEc
Confidence 1 1 258999999987643211 123456678888888888888775 3234566665
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.65 Score=43.48 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
.+.+.|+||++.+|..++..|+..|. .|.+ .+++++.++..+.++........ ....+.. .
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-----TLIL----CDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 35899999999999999999999875 2443 36777777766666543210000 0011110 0
Q ss_pred cccccC-CCcEEEEeCCCCCCCC----Cchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 PYELFE-DAEWALLIGAKPRGPG----MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ~~eal~-dADiViitag~~rk~g----~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
-.+.+. .-|++|..+|....++ .+..+ .+..| ..+.+...+.+.+. ..++.||+++.
T Consensus 76 ~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS 144 (227)
T PRK08862 76 IEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKR-NKKGVIVNVIS 144 (227)
T ss_pred HHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCceEEEEec
Confidence 112334 6899999876422111 11111 22223 23445556666653 33577777764
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.34 Score=49.49 Aligned_cols=75 Identities=12% Similarity=0.255 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH--------H----HhhhcCCCcceEEEe
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------E----LEDSLFPLLREVKIG 163 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~--------D----L~d~~~~~~~~v~i~ 163 (398)
..+|+||| .|.||-.+|-.++..|. ++ .+.|+|+.+.+..-. + +.... ..++.+.+
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-----~V----iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v--~~g~lraT 76 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF-----KV----IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAV--ESGKLRAT 76 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC-----ce----EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHH--hcCCceEe
Confidence 37999999 79999999999999875 12 245777666643210 0 11111 11345555
Q ss_pred cCcccccCCCcEEEEeCCCC
Q 015897 164 INPYELFEDAEWALLIGAKP 183 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~ 183 (398)
.+.+.++.||++|++.-.|
T Consensus 77 -td~~~l~~~dv~iI~VPTP 95 (436)
T COG0677 77 -TDPEELKECDVFIICVPTP 95 (436)
T ss_pred -cChhhcccCCEEEEEecCC
Confidence 4677888999999987665
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=51.73 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
...+++||| +|..|...+..|+. .++ . .|.+ + +++.++++..+.++.+.. + .++....+.++++.+|
T Consensus 128 ~~~~v~iiG-aG~qA~~~~~al~~~~~i-~---~v~V--~--~R~~~~a~~~a~~~~~~~-g--~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFG-AGMQARLQLEALTLVRDI-R---SARI--W--ARDSAKAEALALQLSSLL-G--IDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHhCCc-c---EEEE--E--CCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhccC
Confidence 456999999 59999998888874 443 2 2544 3 788888888888875421 2 2344455667889999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9999864
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.15 Score=51.18 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=41.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| .|++|.+++..|...|+ .+.+ . +....+....+.+ + . +.. .+..+++++||+
T Consensus 17 gktIgIIG-~GsmG~AlA~~L~~sG~-----~Vvv--~--~r~~~~s~~~A~~--~---G----~~~-~s~~eaa~~ADV 76 (330)
T PRK05479 17 GKKVAIIG-YGSQGHAHALNLRDSGV-----DVVV--G--LREGSKSWKKAEA--D---G----FEV-LTVAEAAKWADV 76 (330)
T ss_pred CCEEEEEe-eHHHHHHHHHHHHHCCC-----EEEE--E--ECCchhhHHHHHH--C---C----Cee-CCHHHHHhcCCE
Confidence 46899999 59999999999998875 2433 2 2222222222221 1 1 112 256789999999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
|+++.
T Consensus 77 VvLaV 81 (330)
T PRK05479 77 IMILL 81 (330)
T ss_pred EEEcC
Confidence 99985
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.59 Score=43.58 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999999875
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.53 Score=43.89 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..+. .+.+ . ..++++.++....++.+.. .++.. ..| +.+
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~-----~v~~--~-~~~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 73 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA-----KVVI--N-YNSSKEAAENLVNELGKEG----HDVYAVQADVSKVEDANR 73 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-----EEEE--E-cCCcHHHHHHHHHHHHhcC----CeEEEEECCCCCHHHHHH
Confidence 36899999999999999999998774 2433 1 1344455555555554321 11111 111 111
Q ss_pred -------ccCCCcEEEEeCCCCCCCCC---c---hhhhHHHHHHHHHHHHHHHHHhc--CCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g~---~---r~dll~~N~~i~~~i~~~i~~~a--~p~a~vIvvtN 223 (398)
.+...|+||.++|....... + -.+.+..|..-...+.+.+..+. ..++.+++++.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 74 LVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 12457999998876432111 1 12335555444333333333210 23556666664
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.39 Score=51.91 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=57.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec------------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------ 164 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~------------ 164 (398)
|||.|+||+|++|++++..|+.... + ..|.. ++.+...+.++.....+.+ .+++...
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~-g--~~V~~--l~R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRR-E--ATVHV--LVRRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCC-C--CEEEE--EECcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 4899999999999999999985221 1 12432 2222122222222111100 0111111
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
...+.++++|+||.+++... ......+....|+.-...+.+.+.+.
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 115 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL 115 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc
Confidence 11233489999999987532 12233456677888888888877774
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.49 Score=44.65 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..+++.|+||+|.+|.+++..|+..+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 346899999999999999999998774
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.15 Score=48.04 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++....++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 51 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-----TVVV----GDIDPEAGKAAADEV 51 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHc
Confidence 46899999999999999999998874 2443 356655555444443
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.29 Score=48.32 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc---eEEEecCc------ccc
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR---EVKIGINP------YEL 169 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~---~v~i~~~~------~ea 169 (398)
.+|.||+..||.++|..|+.+|+ .+.| +-+++++|+..+.||++.. ..-. .+.++.++ .+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-----nvvL----IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-----NVVL----ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHHHHHH
Confidence 46889999999999999999997 3544 6899999999999999865 3211 22233333 356
Q ss_pred cCCCcEEEE--eCCCCC-CCC-------CchhhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 170 FEDAEWALL--IGAKPR-GPG-------MERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 170 l~dADiVii--tag~~r-k~g-------~~r~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+.+-|+=|+ .+|... -|. .+-.+.+..| ...-+.+...|.+ +..|.|++++--..
T Consensus 122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS~ag 190 (312)
T KOG1014|consen 122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGSFAG 190 (312)
T ss_pred hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEeccccc
Confidence 667777544 455432 222 1111112222 2345566667776 57899999885443
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.15 Score=49.63 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..++.|+|| |.+|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|+
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~Di 188 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFDL 188 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCCE
Confidence 468999995 99999999999987752 2544 3788888877776654221 12221234577889999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||.+-...
T Consensus 189 vInaTp~g 196 (278)
T PRK00258 189 IINATSAG 196 (278)
T ss_pred EEECCcCC
Confidence 99975443
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.13 Score=53.13 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..+|+|+|| |.+|..++..|...|.. .|.+ .+++.++++..+.++.. .+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVR----KITV----ANRTLERAEELAEEFGG-------EAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCC----eEEE----EeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhccCC
Confidence 3479999995 99999999998876641 2443 36777777666655421 1111134567788999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
+||.+.+.+. +-.+. ..+.. .+...-....++|-+++|-|+=
T Consensus 245 vVI~aT~s~~-~~i~~--------~~l~~---~~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 245 IVISSTGAPH-PIIGK--------GMVER---ALKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEEECCCCCC-cEEcH--------HHHHH---HHhhccCCCeEEEEeCCCCCCc
Confidence 9999866442 10111 11111 1111102468899999997753
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.097 Score=58.68 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=65.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (398)
|||.|+||+|++|++++..|+..|. .|.. ++++.... +.... .+ ....+. ....++++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~----l~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVG----IARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998774 2433 24432110 00000 00 011111 12245678899
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~ 235 (398)
+||.+++... + ....|..-...+.+.+.+. + -..+|++|.+.-..++.+.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~-g-vkr~V~iSS~~K~aaE~ll~~ 115 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAET-G-TGRIVFTSSGHQPRVEQMLAD 115 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHc-C-CCeEEEECCcHHHHHHHHHHH
Confidence 9999986432 1 3456777777777777764 2 346777777653334433333
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.56 Score=44.86 Aligned_cols=116 Identities=10% Similarity=0.017 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~--------- 165 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++ +.++..+.++.+...... ....++..
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-----~vi~----~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-----YVLA----VDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 45899999999999999999998874 2443 2566 556656666653210000 01111110
Q ss_pred cccccCCCcEEEEeCCCCCCCC----Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 PYELFEDAEWALLIGAKPRGPG----MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g----~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+...|++|..+|.....+ .+.. ..+..|. .+.+.+.+.+.+ .++.||+++-.
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~g~iv~isS~ 142 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMME---QGGSIINTSSF 142 (272)
T ss_pred HHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH---cCCEEEEeCch
Confidence 1112345799999888643211 1111 2233443 344555566654 24777777743
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.1 Score=50.72 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+||| .|.+|..++..|... ..+ -++.. ++ |++.++++..+..+.. ....++..+.+.++|
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~-~~~--~el~a-V~--dr~~~~a~~~a~~~g~--------~~~~~~~eell~~~D 69 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRG-LPG--LTLSA-VA--VRDPQRHADFIWGLRR--------PPPVVPLDQLATHAD 69 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhc-CCC--eEEEE-EE--CCCHHHHHHHHHhcCC--------CcccCCHHHHhcCCC
Confidence 358999999 599999999888764 111 02321 23 6666665544433210 112344556678899
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+|+++..
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9999865
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.74 Score=43.23 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
+++.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-----RVLA----LDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 4799999999999999999998764 2443 356666665555554
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.46 Score=45.32 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 48 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY-----LVIA----TMRNPEKQENLLSQAT 48 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 4689999999999999999998774 2433 2555555554444433
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.19 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
|+||+|+||+|.+|..++..|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 5799999999999999999888654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.45 Score=52.20 Aligned_cols=102 Identities=20% Similarity=0.099 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-CC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dA 173 (398)
+++||+||| .|.+|..++..|...|. .|.. + |++.+. + .+.++ + +....+..+.+. ++
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-----~V~~--~--dr~~~~-~-~a~~~-----G----v~~~~~~~el~~~~a 426 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-----TVLA--Y--SRSDYS-D-EAQKL-----G----VSYFSDADDLCEEHP 426 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC-----EEEE--E--ECChHH-H-HHHHc-----C----CeEeCCHHHHHhcCC
Confidence 457999999 59999999999987663 2432 3 454321 1 22221 1 112333444454 59
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHH-hcCCCeEEEEECCCchhHHHHHH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCNTNALICL 233 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~-~a~p~a~vIvvtNP~d~~t~~~~ 233 (398)
|+||++.-. ..+.++.+.+.. ...++++|+-++.-=......+.
T Consensus 427 DvVILavP~----------------~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~ 471 (667)
T PLN02712 427 EVILLCTSI----------------LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFL 471 (667)
T ss_pred CEEEECCCh----------------HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHH
Confidence 999998531 223333333332 12467888877654333333333
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.11 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 45899999999999999999998874
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.59 Score=43.55 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..+|.|+||+|.||++++..|+..+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.65 Score=43.97 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
.++|.|+||++.||.+++..|+..|. .+.+ . .+.+++.++..+.++..
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-----~v~~--~-~~~~~~~~~~~~~~~~~ 55 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-----NIAF--T-YNSNVEEANKIAEDLEQ 55 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998875 2443 2 13456666666666653
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.16 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++||+|+||+|.+|..++..|...+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999998886543
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.14 Score=50.72 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=52.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
.+..+|+||| +|..|...+..++. .++ . .|.+ + +++.++++..+.++.+.. . .+. ..+.++++.+
T Consensus 123 ~~~~~v~IiG-aG~qa~~~~~al~~~~~~-~---~v~v--~--~r~~~~a~~~a~~~~~~~--~--~~~-~~~~~~av~~ 188 (304)
T PRK07340 123 APPGDLLLIG-TGVQARAHLEAFAAGLPV-R---RVWV--R--GRTAASAAAFCAHARALG--P--TAE-PLDGEAIPEA 188 (304)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHhCCC-C---EEEE--E--cCCHHHHHHHHHHHHhcC--C--eeE-ECCHHHHhhc
Confidence 3457999999 59999999998875 343 2 2544 3 778888888888876321 1 232 3556778999
Q ss_pred CcEEEEeCC
Q 015897 173 AEWALLIGA 181 (398)
Q Consensus 173 ADiViitag 181 (398)
||+|+.+-.
T Consensus 189 aDiVitaT~ 197 (304)
T PRK07340 189 VDLVVTATT 197 (304)
T ss_pred CCEEEEccC
Confidence 999998643
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.2 Score=47.24 Aligned_cols=78 Identities=23% Similarity=0.179 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc-----------------cchhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-----------------RSLQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D-----------------~~~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||.|+|+ |.+|+.++..|+..|+-. +. |+|-| +...+++..+..|+... |..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~----i~--lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~- 91 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGK----LG--LVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDV- 91 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCE----EE--EEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCC-
Confidence 359999995 999999999999998721 33 34433 22344555555555443 321
Q ss_pred eEEEec------CcccccCCCcEEEEeCCC
Q 015897 159 EVKIGI------NPYELFEDAEWALLIGAK 182 (398)
Q Consensus 159 ~v~i~~------~~~eal~dADiViitag~ 182 (398)
++.... +..+.++++|+||.+...
T Consensus 92 ~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~ 121 (228)
T cd00757 92 EIEAYNERLDAENAEELIAGYDLVLDCTDN 121 (228)
T ss_pred EEEEecceeCHHHHHHHHhCCCEEEEcCCC
Confidence 222111 123467899999988653
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.12 Score=51.44 Aligned_cols=73 Identities=26% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..+++||| +|..+..-+..++.-.-+. .|.+ + +++.++++..+.++++ . ...+....+.++++++||
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~i~---~v~v--~--~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRPIK---EVRV--Y--SRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS--S---EEEE--E---SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCCce---EEEE--E--ccChhHHHHHHHhhcc-c---cccceeccchhhhcccCC
Confidence 457999999 5999998777665432233 3554 3 7888999999999887 2 235666778899999999
Q ss_pred EEEEe
Q 015897 175 WALLI 179 (398)
Q Consensus 175 iViit 179 (398)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 98875
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.15 Score=54.11 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..||+|||| |.+|..++..|...|. . .|.+ .+++.++++..+..+.... ..+....+..+++.++|+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~-~---~V~V----~nRs~era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC-T---KMVV----VNRSEERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC-C---eEEE----EeCCHHHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 479999995 9999999999988774 1 2544 3777787776665542110 011122345678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhc---CCCeEEEEECCCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA---SRNVKVIVVGNPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a---~p~a~vIvvtNP~d~ 227 (398)
||.+-+.+. | -+.++..+.+.+.. ...-.+|-++.|-|+
T Consensus 333 VIsAT~s~~-p------------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 333 VFTSTSSET-P------------LFLKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred EEEccCCCC-C------------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 988644331 1 12333334333210 112478899999765
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.23 Score=44.35 Aligned_cols=77 Identities=17% Similarity=0.052 Sum_probs=45.7
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHhcCcCCCCCceEEEecccccc--hh--hHHHHHHHHhhhcCCCcceEEEecCccccc
Q 015897 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQ--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 96 ~~KI~IiGA-~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~--~~--~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
..||+++|= -+++..+++..+..-|. .+ ++.....- +. ..-..+.+.... ....++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-----~~--~~~~P~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-----EV--VLIAPEGLRYPPDPEVLEKAKKNAKK---NGGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-----EE--EEESSGGGGGSHHHHHHHHHHHHHHH---HTTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-----EE--EEECCCcccCCCCHHHHHHHHHHHHH---hCCCeEEEeCHHHhc
Confidence 469999994 36899999988888664 23 33322210 01 111122221111 124678888888999
Q ss_pred CCCcEEEEeCCC
Q 015897 171 EDAEWALLIGAK 182 (398)
Q Consensus 171 ~dADiViitag~ 182 (398)
++||+|+...-.
T Consensus 72 ~~aDvvy~~~~~ 83 (158)
T PF00185_consen 72 KGADVVYTDRWQ 83 (158)
T ss_dssp TT-SEEEEESSS
T ss_pred CCCCEEEEcCcc
Confidence 999999887544
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.55 Score=40.66 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Confidence 6899995 9999999999999987
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.65 Score=44.43 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++.+.|+||+|.+|.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998875
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.045 Score=53.47 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=80.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc----CcCCCCCceEEEecccc--cchhh--HHHHHHHHhhhcCCCcceEEEecCccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPDQPIALKLLGSE--RSLQA--LEGVAMELEDSLFPLLREVKIGINPYE 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~----~~~~~~~~i~L~L~d~D--~~~~~--l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (398)
.||.|.|| |..|..++..|... |+-.++-.-.+.++|.+ +.+++ +......+.+.. . + ....+..|
T Consensus 26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L~e 99 (279)
T cd05312 26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSLLE 99 (279)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCHHH
Confidence 69999995 99999999888775 65221101123344432 00111 222222232211 0 0 12346889
Q ss_pred ccC--CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch---hHHHHHHHHCCCCCCce
Q 015897 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPAKN 243 (398)
Q Consensus 169 al~--dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~~~~~~~kv 243 (398)
+++ ++|++|=+.+.+ | -+-+++.+.|.++ +++.+|.-.+||.. ....-+++.+.+ +.+
T Consensus 100 ~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~-~~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~ai 162 (279)
T cd05312 100 VVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKS-NERPIIFALSNPTSKAECTAEDAYKWTDG--RAL 162 (279)
T ss_pred HHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCcCCccccCHHHHHHhhcC--CEE
Confidence 999 999988765433 1 2345677788887 68999999999964 455666666533 247
Q ss_pred EEecCchhHH
Q 015897 244 FHALTRLDEN 253 (398)
Q Consensus 244 ig~gt~lDs~ 253 (398)
|++|+-.+..
T Consensus 163 ~ATGsPf~pv 172 (279)
T cd05312 163 FASGSPFPPV 172 (279)
T ss_pred EEeCCCCCCe
Confidence 8888755543
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.29 Score=45.49 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Cccc---cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYE---LF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~e---al 170 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++.....+. .. .....++. ...+ ..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-----~V~~----~~r~~~~~~~~~~~~~-~~---~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-----RVVA----AARNAAALDRLAGETG-CE---PLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhC-Ce---EEEecCCCHHHHHHHHHHh
Confidence 46899999999999999999998874 2443 3566555543332221 00 00111110 0011 12
Q ss_pred CCCcEEEEeCCCCCC-C--CCchh---hhHHHHHHHHHHHHHHHHHhc---CCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPRG-P--GMERA---GLLDINGQIFAEQGKALNAVA---SRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~rk-~--g~~r~---dll~~N~~i~~~i~~~i~~~a---~p~a~vIvvtN 223 (398)
...|+||..+|.... + ..+.. ..+..|..-...+.+.+.+.. +..+.+|+++-
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 76 GAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 357999998876431 1 11221 234455444334444333321 22367777763
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.17 Score=51.69 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=55.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
.....++||| +|..+..-+..++.- .-+. +|.+ + +++.++++..+.++.+.. +...++.+..+..+++++
T Consensus 153 ~da~~l~iiG-~G~QA~~~l~a~~~v~~~i~---~V~v--~--~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~ 223 (379)
T PRK06199 153 KDSKVVGLLG-PGVMGKTILAAFMAVCPGID---TIKI--K--GRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRG 223 (379)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHhcCCcc---EEEE--E--CCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcC
Confidence 3457999999 599999988877763 2123 3544 3 788899998998887532 211246677788999999
Q ss_pred CcEEEEe
Q 015897 173 AEWALLI 179 (398)
Q Consensus 173 ADiViit 179 (398)
||+|+.+
T Consensus 224 ADIVvta 230 (379)
T PRK06199 224 SDIVTYC 230 (379)
T ss_pred CCEEEEc
Confidence 9999864
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.2 Score=49.86 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=53.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
....+++||| +|..+..-+..++.-.-+. +|.+ + +++.++++..+..+++.. .++.+..+..+++++|
T Consensus 126 ~d~~~l~iiG-~G~qA~~~~~a~~~v~~i~---~v~v--~--~r~~~~a~~~~~~~~~~~----~~v~~~~~~~~av~~A 193 (315)
T PRK06823 126 QHVSAIGIVG-TGIQARMQLMYLKNVTDCR---QLWV--W--GRSETALEEYRQYAQALG----FAVNTTLDAAEVAHAA 193 (315)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHhcC----CcEEEECCHHHHhcCC
Confidence 3467999999 5999999888777643322 3544 3 788899888886665421 2466666788999999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+.+-
T Consensus 194 DIV~taT 200 (315)
T PRK06823 194 NLIVTTT 200 (315)
T ss_pred CEEEEec
Confidence 9998753
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.5 Score=44.53 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCc-ceEEEec--Cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLL-REVKIGI--NP----- 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~-~~v~i~~--~~----- 166 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ . +++. +.++....++.+...... ....++. +.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA-----DVAL--F--DLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45899999999999999999999874 2433 2 4432 334444555543210000 0111110 00
Q ss_pred --ccccCCCcEEEEeCCCCCCCCC---chh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 --YELFEDAEWALLIGAKPRGPGM---ERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 --~eal~dADiViitag~~rk~g~---~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+..-|++|.++|....... +.. ..+..|+. +.+.+.+.+.+. ..+.+|+++-
T Consensus 79 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS 145 (254)
T PRK06114 79 RTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLEN--GGGSIVNIAS 145 (254)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc--CCcEEEEECc
Confidence 1223346999999886432111 111 22444433 334555555542 4566666653
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.75 Score=44.06 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998874
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.57 Score=44.14 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEec---------C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~---------~ 165 (398)
|.+.|+||++.+|..++..|+. +. .+.+ .++++++++..+.++........ ..+.++. .
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-----~Vil----~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-----DVVL----AARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-----EEEE----EeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 3588999999999999999984 42 2444 36777888877777764321100 0111111 0
Q ss_pred cccccCCCcEEEEeCCCCCCCC---Cch---hhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g---~~r---~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
-.+.+..-|++|..+|...... .+. .+....| ..+.+.+.+.+.+. ..++.||+++.-.
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS~~ 139 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ-TAPAAIVAFSSIA 139 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCEEEEEeccc
Confidence 1233456899999888642111 111 1222333 22334555666553 2357788777543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.2 Score=46.94 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc----------------chhhHHHHHHHHhhhcCCCcce
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER----------------SLQALEGVAMELEDSLFPLLRE 159 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~----------------~~~~l~g~a~DL~d~~~~~~~~ 159 (398)
..||+|+|+ |.+|+.++..|+..|+-. +. |+|.|. ...+++..+..|+... +.. +
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~----i~--lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v-~ 98 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVGN----LK--LVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFV-E 98 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCe----EE--EEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCC-E
Confidence 459999995 999999999999998721 33 355542 1234555555555433 221 2
Q ss_pred EEEe-----cC-cccccCCCcEEEEeCC
Q 015897 160 VKIG-----IN-PYELFEDAEWALLIGA 181 (398)
Q Consensus 160 v~i~-----~~-~~eal~dADiViitag 181 (398)
+... .. ..+.++++|+||.+..
T Consensus 99 v~~~~~~i~~~~~~~~~~~~DvVI~a~D 126 (212)
T PRK08644 99 IEAHNEKIDEDNIEELFKDCDIVVEAFD 126 (212)
T ss_pred EEEEeeecCHHHHHHHHcCCCEEEECCC
Confidence 2211 11 2256789999998743
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.18 Score=50.64 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=47.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-------------------hhhHHHHHHHHhhhcCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-------------------LQALEGVAMELEDSLFPLL 157 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-------------------~~~l~g~a~DL~d~~~~~~ 157 (398)
.||.|||+ |.+|++++..|+..|+ + .+. |+|.|.- ..+++..+..|.+.. +..
T Consensus 25 ~~VlIiG~-GglGs~va~~La~aGv-g---~i~--lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v 96 (338)
T PRK12475 25 KHVLIVGA-GALGAANAEALVRAGI-G---KLT--IADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEV 96 (338)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-C---EEE--EEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCc
Confidence 58999995 9999999999999987 2 143 4555531 124444455555443 221
Q ss_pred ceEEEec------CcccccCCCcEEEEeCC
Q 015897 158 REVKIGI------NPYELFEDAEWALLIGA 181 (398)
Q Consensus 158 ~~v~i~~------~~~eal~dADiViitag 181 (398)
++.... +..+.++++|+||.+..
T Consensus 97 -~i~~~~~~~~~~~~~~~~~~~DlVid~~D 125 (338)
T PRK12475 97 -EIVPVVTDVTVEELEELVKEVDLIIDATD 125 (338)
T ss_pred -EEEEEeccCCHHHHHHHhcCCCEEEEcCC
Confidence 222111 12456889999998753
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.54 Score=43.63 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-----------------chhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||.|+|+ |.+|+.++..|+..|+-. +. |+|.|. ...+++..+..|.+.. |..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~----i~--lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v- 91 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGT----IV--IVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDI- 91 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCe----EE--EecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCC-
Confidence 359999995 999999999999998721 43 455542 1344555555555433 321
Q ss_pred eEEEec------CcccccCCCcEEEEeCC
Q 015897 159 EVKIGI------NPYELFEDAEWALLIGA 181 (398)
Q Consensus 159 ~v~i~~------~~~eal~dADiViitag 181 (398)
++.... +..+.++++|+||.+..
T Consensus 92 ~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d 120 (202)
T TIGR02356 92 QVTALKERVTAENLELLINNVDLVLDCTD 120 (202)
T ss_pred EEEEehhcCCHHHHHHHHhCCCEEEECCC
Confidence 222111 12345889999988754
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.2 Score=41.93 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 35899999999999999999998875
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.38 Score=44.49 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.||..++..|+..|.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.092 Score=57.65 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=57.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADi 175 (398)
|||.|+||+|++|++++..|+..|. .|.. + |+.... +.+....+ ..++.-. ...++++++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~--l--dr~~~~-------~~~~~ve~v~~Dl~d~-~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG--I--AQHPHD-------ALDPRVDYVCASLRNP-VLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCChhh-------cccCCceEEEccCCCH-HHHHHhcCCCE
Confidence 4899999999999999999998774 2432 2 433221 01000000 0011000 12345678999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+++... . +....|..-...+.+.+++. +.++|.+|
T Consensus 64 VIHLAa~~~--~----~~~~vNv~Gt~nLleAA~~~---GvRiV~~S 101 (699)
T PRK12320 64 VIHLAPVDT--S----APGGVGITGLAHVANAAARA---GARLLFVS 101 (699)
T ss_pred EEEcCccCc--c----chhhHHHHHHHHHHHHHHHc---CCeEEEEE
Confidence 999886421 1 11235777777778777764 24566555
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.76 Score=43.31 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.+|..++..|+..|.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.17 Score=51.11 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...+++||| +|..+...+..++.-.-+. +|.+ + +++.++++..+.++.+. ..++.+..+.++++++||
T Consensus 128 da~~l~iiG-aG~QA~~~l~a~~~vr~i~---~V~v--~--~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 195 (346)
T PRK07589 128 DSRTMALIG-NGAQSEFQALAFKALLGIE---EIRL--Y--DIDPAATAKLARNLAGP----GLRIVACRSVAEAVEGAD 195 (346)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCce---EEEE--E--eCCHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCC
Confidence 357999999 5999988776665432222 3543 3 78889998888888752 124666678899999999
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+|+.+-
T Consensus 196 IIvtaT 201 (346)
T PRK07589 196 IITTVT 201 (346)
T ss_pred EEEEec
Confidence 999854
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.94 Score=43.98 Aligned_cols=116 Identities=11% Similarity=-0.014 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEE-EecC--cc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVK-IGIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~---- 167 (398)
.++|.|+||+|.+|.+++..|+..|. .+.+ + +++. +.++....+++... .++. +..| +.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-----~V~l--~--~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~ 112 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-----DIAI--V--YLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCK 112 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHH
Confidence 46899999999999999999998774 2443 3 3332 22333333333211 1111 1111 11
Q ss_pred -------cccCCCcEEEEeCCCCC--CCC--Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -------eal~dADiViitag~~r--k~g--~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|+||..+|... .+- .+. ...+..|..-...+.+.+.++-.+++.+|+++.-
T Consensus 113 ~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 113 DAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI 183 (290)
T ss_pred HHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence 11235799999887532 111 111 2346666665566665555432245667777653
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.15 Score=49.28 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=60.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Cc----cccc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NP----YELF 170 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~----~eal 170 (398)
||.|+||+|++|..++..|+..+. .+.+ + +...........++.+. . .+.. .. .+ .+++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~--~--~~~~~~~~~~~~~~~~~--~---~~~~~~~D~~~~~~~~~~~ 66 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVV--L--DNLSNGSPEALKRGERI--T---RVTFVEGDLRDRELLDRLF 66 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEE--E--eCCCccchhhhhhhccc--c---ceEEEECCCCCHHHHHHHH
Confidence 689999999999999999998764 2432 2 22111111011111110 0 1111 11 11 2233
Q ss_pred --CCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 --EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 --~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+.|+||.++|..+.+ .....+.+..|+.....+.+.+.+. +. ..+++++
T Consensus 67 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~s 120 (328)
T TIGR01179 67 EEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GV-KKFIFSS 120 (328)
T ss_pred HhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CC-CEEEEec
Confidence 2689999998764322 1233455677888888888887774 32 3444444
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.74 Score=44.77 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
.+++.|+||+|.+|..++..|+..|. .|.+ .+++++.++..+.++.+.. ... ....++. .
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~l~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-----KLAL----VDLEEAELAALAAELGGDD-RVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcCCC-cEEEEEecCCCHHHHHHHHHH
Confidence 35899999999999999999999875 2443 3677777776666654211 000 0011111 0
Q ss_pred cccccCCCcEEEEeCCCC
Q 015897 166 PYELFEDAEWALLIGAKP 183 (398)
Q Consensus 166 ~~eal~dADiViitag~~ 183 (398)
..+.+...|+||..+|..
T Consensus 79 ~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 79 AVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHcCCCCEEEECCCcC
Confidence 012235689999998864
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.22 Score=44.54 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||.|+|| |.+|...+..|+..+. .|.+ ++.+..++ + .++.. . .+....-..+++.++|+
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga-----~V~V--Isp~~~~~-l----~~l~~----i--~~~~~~~~~~dl~~a~l 73 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA-----FVTV--VSPEICKE-M----KELPY----I--TWKQKTFSNDDIKDAHL 73 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--EcCccCHH-H----HhccC----c--EEEecccChhcCCCceE
Confidence 469999995 9999999999998764 2543 22222211 1 12210 0 12222234567999999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||.+-+
T Consensus 74 ViaaT~ 79 (157)
T PRK06719 74 IYAATN 79 (157)
T ss_pred EEECCC
Confidence 888643
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.6 Score=50.46 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Cccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++.... . ++.+ .. .+.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~~~~ 437 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-----TVFL----VARNGEALDELVAEIRAKG-G---TAHAYTCDLTDSAAVDH 437 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHHH
Confidence 35899999999999999999998874 2443 3677777776666654321 1 1111 11 1121
Q ss_pred -------ccCCCcEEEEeCCCCCCCC---C-----chhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRGPG---M-----ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g---~-----~r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|...... . +-...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 438 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 509 (657)
T PRK07201 438 TVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER--RFGHVVNVSS 509 (657)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCEEEEECC
Confidence 2236899999988642111 0 11223455544 344455555553 4567777763
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.19 Score=55.18 Aligned_cols=46 Identities=33% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-----~Vvi----~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-----HVVL----ADLNLEAAEAVAAEIN 459 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998875 2443 3566666665555554
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.21 Score=48.76 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=54.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||.|+||+|.+|+++...|...+. ++.. .++. -.|+.|.. . + ....++ .+-|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~~----~~r~-------~~dl~d~~-~------~-~~~~~~-~~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVIA----TSRS-------DLDLTDPE-A------V-AKLLEA-FKPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEEE----ESTT-------CS-TTSHH-H------H-HHHHHH-H--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEEE----eCch-------hcCCCCHH-H------H-HHHHHH-hCCCeE
Confidence 7999999999999999999887663 1221 1221 01111110 0 0 000111 146789
Q ss_pred EEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 177 iitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|.+++...... .+.......|......+++.+.+. ++++|-+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 99987642111 234566778889999999988874 67777666
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.58 Score=44.15 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999998875
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.11 Score=53.56 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..||.|+|| |.+|..++..|...|.- .|.+ ..++.++++..+.++... .+....+.++.+.++|+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~~------~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRNA------SAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcCC------eEecHHHHHHHhccCCE
Confidence 468999995 99999999999987762 2544 477777777666654311 12122345788999999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99987655
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.2 Score=41.43 Aligned_cols=113 Identities=10% Similarity=-0.012 Sum_probs=60.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-Eec--Ccc------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI--NPY------ 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~--~~~------ 167 (398)
+.+.|+||+|.+|.+++..|+..|. .+.+ . .+.+....+....++.... .++. +.. .++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~-----~vv~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 71 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF-----KVVA--G-CGPNSPRRVKWLEDQKALG----FDFIASEGNVGDWDSTKAA 71 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC-----EEEE--E-cCCChHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHH
Confidence 4789999999999999999999874 2333 1 1333333333334433211 1111 111 111
Q ss_pred -----cccCCCcEEEEeCCCCCC-CC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 -----ELFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 -----eal~dADiViitag~~rk-~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|+||.++|.... +. .+. ...+..|.. +.+.+.+.+.+. ..+.+++++-
T Consensus 72 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS 140 (246)
T PRK12938 72 FDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER--GWGRIINISS 140 (246)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEEec
Confidence 223468999999886532 11 111 223455544 345555555542 4467777764
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.32 Score=49.60 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+|||.+|.+|..++..|.... + ..+. +.|++ |. ...+..+.+++||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~----~~V~--g~D~~------------d~---------~~~~~~~~v~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--Q----LEVI--GHDPA------------DP---------GSLDPATLLQRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--C----CEEE--EEcCC------------cc---------ccCCHHHHhcCCCE
Confidence 4699999955999999999998651 2 2222 23542 11 11245677899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||++.- ...+.+++.++++..... +|+++|.-++-
T Consensus 55 VilavP------------v~~~~~~l~~l~~~~~~l-~~~~iVtDVgS 89 (370)
T PRK08818 55 LIFSAP------------IRHTAALIEEYVALAGGR-AAGQLWLDVTS 89 (370)
T ss_pred EEEeCC------------HHHHHHHHHHHhhhhcCC-CCCeEEEECCC
Confidence 999853 223344444444332112 46666665553
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.23 Score=49.99 Aligned_cols=70 Identities=27% Similarity=0.360 Sum_probs=41.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||+|+||+|.+|..++..|...+. . .+.|.++-.+.+.. ....+. ..+..+..-+.++++++|+||
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p---~~~l~~~as~~~~g----~~~~~~------~~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-P---IDKLVLLASDRSAG----RKVTFK------GKELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-C---hhhEEEEeccccCC----CeeeeC------CeeEEEEeCChHHhcCCCEEE
Confidence 689999999999999998887543 1 13333222222111 111111 112333323456789999999
Q ss_pred EeCC
Q 015897 178 LIGA 181 (398)
Q Consensus 178 itag 181 (398)
++.|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9876
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.27 Score=41.39 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcC
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
||+|+|++|.+|..++..|....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~ 23 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP 23 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC
Confidence 68999988999999988888753
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.1 Score=42.27 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINP-------- 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~-------- 166 (398)
.+++.|+||+|.+|.+++..|+..|. .+++ .. ..+.+.++....++........ ....++ +.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~-----~vvi--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-~~~~i~~~~~ 77 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA-----KVVI--NY-RSDEEEANDVAEEIKKAGGEAIAVKGDVT-VESDVVNLIQ 77 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--Ee-CCCHHHHHHHHHHHHHcCCeEEEEEecCC-CHHHHHHHHH
Confidence 46899999999999999999998874 2433 11 2233444444555543210000 011111 11
Q ss_pred --ccccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 --YELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 --~eal~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|.... + ..+.. ..+..|.. +.+...+.+.+. ...+.+|+++-
T Consensus 78 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~g~iv~~sS 145 (261)
T PRK08936 78 TAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEH-DIKGNIINMSS 145 (261)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1123457999998876421 1 11222 23455532 334555566654 34577777764
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.3 Score=42.56 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+|+|++|.+|..++..+...+-+ +++- + +|.+.++.... . .. .+..+.+..+.++++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elva-v--~d~~~~~~~~~----~----~~--~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVA-A--VDRPGSPLVGQ----G----AL--GVAITDDLEAVLADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEE-E--EecCCcccccc----C----CC--CccccCCHHHhccCCCE
Confidence 579999997699999999877654321 2332 2 35544433221 1 11 23334455555678999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
||...
T Consensus 64 Vid~t 68 (257)
T PRK00048 64 LIDFT 68 (257)
T ss_pred EEECC
Confidence 98553
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.36 Score=48.08 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| .|++|.+++..|...++ .+.+. .+.+.+.++... + + . +.. .+..+++++||+
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~-----~Viv~---~~~~~~~~~~a~-~--~---G----v~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL-----NVIVG---LRKGGASWKKAT-E--D---G----FKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC-----eEEEE---ECcChhhHHHHH-H--C---C----CEE-CCHHHHHhcCCE
Confidence 36899999 59999999999998875 23321 133323322111 1 1 1 122 246778899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+++..
T Consensus 63 VvLaVp 68 (314)
T TIGR00465 63 IMNLLP 68 (314)
T ss_pred EEEeCC
Confidence 999853
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.19 Score=49.03 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=41.4
Q ss_pred EEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeC
Q 015897 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (398)
Q Consensus 101 IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViita 180 (398)
||| .|.+|..++..|+..+. ++.+ + |++.++++... +.. .....+..++++++|+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l~----~~g------~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRV--F--DLFPDAVEEAV----AAG------AQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHH----HcC------CeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998774 2443 3 66666554332 111 223445678899999999985
Q ss_pred C
Q 015897 181 A 181 (398)
Q Consensus 181 g 181 (398)
.
T Consensus 61 p 61 (288)
T TIGR01692 61 P 61 (288)
T ss_pred C
Confidence 3
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.3 Score=41.77 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 96 ~~KI~IiGA~G-~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
.+++.|+||+| .+|..++..|+..|. .|.+ .|++.++++....+++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-----~V~~----~~~~~~~~~~~~~~~~~ 64 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-----RVVI----SDIHERRLGETADELAA 64 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHH
Confidence 45899999877 699999999998875 2443 36666666655555543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.12 Score=52.51 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=44.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC----cccccCCCc
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELFEDAE 174 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal~dAD 174 (398)
|.|+|| |.+|+.++..|+...-+. .+.+ .|++.++++..+.++.. .....+.+... ..+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999999876532 2444 48888888877655411 11111222222 245789999
Q ss_pred EEEEeCCC
Q 015897 175 WALLIGAK 182 (398)
Q Consensus 175 iViitag~ 182 (398)
+||.+++.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.96 Score=44.82 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc------c
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------E 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------e 168 (398)
+++||+||| +|++|..++..+....-+ ++.- +.|+|.+...+ ..+.++. . + .+.+++ .
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~v----elvA-Vvdid~es~gl-a~A~~~G--i-~------~~~~~ie~LL~~~ 66 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHL----EPGA-MVGIDPESDGL-ARARRLG--V-A------TSAEGIDGLLAMP 66 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCc----EEEE-EEeCChhhHHH-HHHHHcC--C-C------cccCCHHHHHhCc
Confidence 457999999 699999988887764322 2332 34444321111 2233221 1 1 111111 2
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch--------hHHHHHHHHCCCCC
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN--------TNALICLKNAPSIP 240 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d--------~~t~~~~k~~~~~~ 240 (398)
++.+.|+|+++.+ ...-.+.++.+.+ .++.++--.|.. ++...+. ..+
T Consensus 67 ~~~dIDiVf~AT~----------------a~~H~e~a~~a~e----aGk~VID~sPA~~~PlvVP~VN~~~~~----~~~ 122 (302)
T PRK08300 67 EFDDIDIVFDATS----------------AGAHVRHAAKLRE----AGIRAIDLTPAAIGPYCVPAVNLDEHL----DAP 122 (302)
T ss_pred CCCCCCEEEECCC----------------HHHHHHHHHHHHH----cCCeEEECCccccCCcccCcCCHHHHh----ccc
Confidence 3468999999754 2345556655554 233344444665 3333332 222
Q ss_pred CceEEecCchhHHHHHHHHHH
Q 015897 241 AKNFHALTRLDENRAKCQLAL 261 (398)
Q Consensus 241 ~kvig~gt~lDs~Rl~~~lA~ 261 (398)
..++.+|...-++.+-..|.+
T Consensus 123 ~~~iia~p~~ati~~v~Al~~ 143 (302)
T PRK08300 123 NVNMVTCGGQATIPIVAAVSR 143 (302)
T ss_pred CCCEEECccHHHHHHHHHhcc
Confidence 245667666556666666655
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.33 Score=50.00 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..|+.|||| |-+|.-.+..|...|+.. |.+ ..++.++++..+.++. ..+.-..+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~----i~I----aNRT~erA~~La~~~~-------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKK----ITI----ANRTLERAEELAKKLG-------AEAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCE----EEE----EcCCHHHHHHHHHHhC-------CeeecHHHHHHhhhhCC
Confidence 3468999995 999999999999999732 544 4788888887777765 12222345688999999
Q ss_pred EEEEeCCCC
Q 015897 175 WALLIGAKP 183 (398)
Q Consensus 175 iViitag~~ 183 (398)
+||.+-+.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999976554
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.43 Score=47.63 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH-HHHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeCC
Q 015897 108 IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGA 181 (398)
Q Consensus 108 vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViitag 181 (398)
-|+.+|..|+..|. ++.+ + |++.++++ ..+..+.+.. .....+..++.++||+||++-.
T Consensus 31 gGspMArnLlkAGh-----eV~V--~--Drnrsa~e~e~~e~LaeaG------A~~AaS~aEAAa~ADVVIL~LP 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-----DVVL--A--EPNREFMSDDLWKKVEDAG------VKVVSDDKEAAKHGEIHVLFTP 90 (341)
T ss_pred CHHHHHHHHHHCCC-----EEEE--E--eCChhhhhhhhhHHHHHCC------CeecCCHHHHHhCCCEEEEecC
Confidence 37889999988875 3443 4 56555442 2333444322 2344567899999999998743
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.34 Score=46.86 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+++.|+|+ |.+|.+++..|+..+. .+.+ .+++.++++..+.++.... .+.....+...+.++|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v----~~R~~~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADC-----NVII----ANRTVSKAEELAERFQRYG-----EIQAFSMDELPLHRVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhhcC-----ceEEechhhhcccCccE
Confidence 568999995 9999999999998763 2443 3677777777776654311 11121222334568999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||.+.+..
T Consensus 182 vInatp~g 189 (270)
T TIGR00507 182 IINATSAG 189 (270)
T ss_pred EEECCCCC
Confidence 99976543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.36 Score=45.03 Aligned_cols=103 Identities=19% Similarity=0.194 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE--ecCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (398)
..||.|||+ |.+|..-+..|+..|- .|.+ ++.+.. +.++ ++.+.. ++.. ..-..+++.++
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga-----~VtV--vsp~~~-~~l~----~l~~~~-----~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA-----QLRV--IAEELE-SELT----LLAEQG-----GITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EcCCCC-HHHH----HHHHcC-----CEEEEeCCCCHHHhCCc
Confidence 359999995 9999999999998774 2443 333332 1222 222111 2332 22235678999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC--chhHHHHHHH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNALICLK 234 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP--~d~~t~~~~k 234 (398)
|+||.+-+.+ .-|. .+....++ .+..|-++++| +|.+.+...+
T Consensus 71 ~lVi~at~d~-----------~ln~----~i~~~a~~---~~ilvn~~d~~e~~~f~~pa~~~ 115 (205)
T TIGR01470 71 FLVIAATDDE-----------ELNR----RVAHAARA---RGVPVNVVDDPELCSFIFPSIVD 115 (205)
T ss_pred EEEEECCCCH-----------HHHH----HHHHHHHH---cCCEEEECCCcccCeEEEeeEEE
Confidence 9998875532 1233 33333333 35556667888 5555544433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.27 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||.|+|| |.+|+.++..|+..|+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv 48 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV 48 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 358999995 9999999999999987
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.3 Score=40.96 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=59.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec---------Ccc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI---------NPY 167 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~---------~~~ 167 (398)
.+.|+||+|.+|.+++..|+..|. .+.+ ... .+.+.++....++....... .....++. ...
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~--~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY-----RVAA--NCG-PNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVE 73 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC-----EEEE--EeC-CCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 578999999999999999998775 2333 111 13444443333332111000 00111110 011
Q ss_pred cccCCCcEEEEeCCCCCCC---CCc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ELFEDAEWALLIGAKPRGP---GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 eal~dADiViitag~~rk~---g~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|+||.++|..... ..+ -...+..|.. +.+.+.+.+++. ..+.+++++-.
T Consensus 74 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~iss~ 138 (242)
T TIGR01829 74 AELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER--GWGRIINISSV 138 (242)
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 2245689999988764311 111 1223444544 344455555553 45677777743
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.3 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+||+|+||+|.+|..++..|.....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999886543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.95 Score=43.13 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|+++.|+||+|.+|..++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999988764
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.43 Score=46.38 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=60.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc--cCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL--FEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea--l~dAD 174 (398)
+||+||| .|.+|..++..|......+ +.|..+ .|++.++.+..+.. +.+.++ .++ ..+.|
T Consensus 3 ~rvgiIG-~GaIG~~va~~l~~~~~~~----~~l~~V-~~~~~~~~~~~~~~-----------~~~~~~-l~~ll~~~~D 64 (267)
T PRK13301 3 HRIAFIG-LGAIASDVAAGLLADAAQP----CQLAAL-TRNAADLPPALAGR-----------VALLDG-LPGLLAWRPD 64 (267)
T ss_pred eEEEEEC-ccHHHHHHHHHHhcCCCCc----eEEEEE-ecCCHHHHHHhhcc-----------CcccCC-HHHHhhcCCC
Confidence 6999999 5999999999987654321 333222 35555444433321 112233 344 37899
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+||-+++ .+.+++++..+=+. +.+-+++-++==.|
T Consensus 65 lVVE~A~----------------~~av~e~~~~iL~~-g~dlvv~SvGALaD 99 (267)
T PRK13301 65 LVVEAAG----------------QQAIAEHAEGCLTA-GLDMIICSAGALAD 99 (267)
T ss_pred EEEECCC----------------HHHHHHHHHHHHhc-CCCEEEEChhHhcC
Confidence 9999997 47899999988874 45666655553344
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.18 Score=50.52 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=53.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
++|+||| .|.||..++..|...|. .|. .+ |++.+... ..+ . . +. ..+..+.+++||+|
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G~-----~V~--~~--d~~~~~~~--~~~--~---~----~~-~~~l~ell~~aDiV 208 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFGM-----RIL--YY--SRTRKPEA--EKE--L---G----AE-YRPLEELLRESDFV 208 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEE--EE--CCCCChhh--HHH--c---C----CE-ecCHHHHHhhCCEE
Confidence 6999999 59999999999987664 243 23 44432211 111 1 1 11 13567889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++...... + +-.++.+ +.+... .+++++||++
T Consensus 209 ~l~lP~t~----~-------T~~~i~~--~~~~~m-k~ga~lIN~a 240 (333)
T PRK13243 209 SLHVPLTK----E-------TYHMINE--ERLKLM-KPTAILVNTA 240 (333)
T ss_pred EEeCCCCh----H-------HhhccCH--HHHhcC-CCCeEEEECc
Confidence 99753210 1 1122211 233443 6899999987
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.47 Score=45.14 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEEEec--CcccccCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGI--NPYELFED 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~d 172 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ . +++. +.++ .. .+.. .......++. +-.+.+..
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~-----~Vi~--~--~r~~~~~~~-~~---~~~~-~~~~~~D~~~~~~~~~~~~~ 79 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA-----KVIG--L--THSKINNSE-SN---DESP-NEWIKWECGKEESLDKQLAS 79 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE--E--ECCchhhhh-hh---ccCC-CeEEEeeCCCHHHHHHhcCC
Confidence 35899999999999999999998875 2433 2 4443 2221 11 1110 0001112211 12345678
Q ss_pred CcEEEEeCCCCCCCCCch---hhhHHHHHH----HHHHHHHHHHH
Q 015897 173 AEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (398)
Q Consensus 173 ADiViitag~~rk~g~~r---~dll~~N~~----i~~~i~~~i~~ 210 (398)
.|++|..+|.......+. .+.+..|.. +.+.+.+.+.+
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 80 LDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999988642222222 234555654 45555555544
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.24 Score=46.54 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.22 Score=48.69 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..++.|+|| |.+|.++++.|+..|.. .|.+ .+++.++++..+.++.... .. ..+....+..+.+.++|+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-~~-~~~~~~~~~~~~~~~~Di 193 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-VI-TRLEGDSGGLAIEKAAEV 193 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-cc-eeccchhhhhhcccCCCE
Confidence 458999995 99999999999988762 2554 3788888888777654321 10 001000112355688999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||.+-.
T Consensus 194 VInaTp 199 (282)
T TIGR01809 194 LVSTVP 199 (282)
T ss_pred EEECCC
Confidence 998743
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.36 Score=49.42 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=54.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
++|+||| .|.||..++..|..-|. .|. .+ |+.....+ ...++ .+....+..+.+++||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V~--~~--dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KLH--YT--DRHRLPEE-VEQEL---------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--EE--CCCCCchh-hHhhc---------CceecCCHHHHhhcCCEE
Confidence 5899999 59999999999887554 232 23 44321111 11111 122234577889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++..... ..+-.++. .+.+... ++++++||++=
T Consensus 253 ~l~lPlt-----------~~T~~li~--~~~l~~m-k~ga~lIN~aR 285 (385)
T PRK07574 253 TIHCPLH-----------PETEHLFD--ADVLSRM-KRGSYLVNTAR 285 (385)
T ss_pred EEcCCCC-----------HHHHHHhC--HHHHhcC-CCCcEEEECCC
Confidence 9974321 01122221 2334443 68999999873
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.34 Score=50.08 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-.+|+|+|+ |.+|..++..+...|. .+.+ .|+++.+++ .+.++ ++ .+ ....++++++|+
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV----~d~d~~R~~-~A~~~-----G~--~~---~~~~e~v~~aDV 260 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIV----TEVDPICAL-QAAME-----GY--EV---MTMEEAVKEGDI 260 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EECChhhHH-HHHhc-----CC--EE---ccHHHHHcCCCE
Confidence 469999995 9999999998887775 2433 366666654 33321 11 11 123577889999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
||.+.|.+ .++..- .+... .+++++++++.+
T Consensus 261 VI~atG~~---------------~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 261 FVTTTGNK---------------DIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEECCCCH---------------HHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 99886632 233321 13333 589999999986
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.5 Score=43.19 Aligned_cols=119 Identities=15% Similarity=0.074 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--C-------c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--N-------P 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~-------~ 166 (398)
+++.|+||++.+|.+++..|+..|.. .|.+ .++++++++..+.++........ ....++. + .
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~----~V~l----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW----HVIM----ACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 37889999999999999999988721 2443 25666666655555532110000 0011110 0 1
Q ss_pred ccccCCCcEEEEeCCCCCC----CCCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRG----PGMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk----~g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|.... +..+.. ..+..|. -+.+.+.+.+.+.....+.||++|-
T Consensus 76 ~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 76 RESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 1123568999998886321 122221 2344443 3466667777653111367777653
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.39 Score=46.02 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-----------------hhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-----------------~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||+|+|+ |.+|+.++..|+..|+ ++ +. ++|-|.- ..+++..+..|.... |..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv-g~---i~--lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v- 102 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV-GT---LT--LVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHI- 102 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CE---EE--EEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCC-
Confidence 469999995 9999999999999986 21 33 3444422 234444455555433 321
Q ss_pred eEEEec-----C-cccccCCCcEEEEeCC
Q 015897 159 EVKIGI-----N-PYELFEDAEWALLIGA 181 (398)
Q Consensus 159 ~v~i~~-----~-~~eal~dADiViitag 181 (398)
++.... + ..+.++++|+||.+..
T Consensus 103 ~i~~~~~~i~~~~~~~~~~~~DiVi~~~D 131 (245)
T PRK05690 103 AIETINARLDDDELAALIAGHDLVLDCTD 131 (245)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEecCC
Confidence 222111 1 1245789999998854
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.7 Score=42.76 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--c------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------ 166 (398)
.+++.|+||+|.||..++..|+..|. .|.+ ..++.++++....+|.... +. .++.. ..| +
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-----~Vil----~~R~~~~~~~~~~~l~~~~-~~-~~v~~~~~Dl~d~~sv~~ 82 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-----EVIL----PVRNRAKGEAAVAAIRTAV-PD-AKLSLRALDLSSLASVAA 82 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CC-CceEEEEecCCCHHHHHH
Confidence 46899999999999999999998874 2444 3577777776666665321 11 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCCCCCC--CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 -----YELFEDAEWALLIGAKPRGP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 -----~eal~dADiViitag~~rk~--g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|....+ ..+. ...+..|. -+.+.+.+.+.+ + .+.||+++-
T Consensus 83 ~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~--~-~~riv~vsS 150 (313)
T PRK05854 83 LGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRA--G-RARVTSQSS 150 (313)
T ss_pred HHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHh--C-CCCeEEEec
Confidence 12234589999988753211 1111 12244443 334555555554 2 456666653
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.3 Score=43.50 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=56.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh-hHHHHHHHHhhhcCC---Cc-ceEEEecCc------
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFP---LL-REVKIGINP------ 166 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~-~l~g~a~DL~d~~~~---~~-~~v~i~~~~------ 166 (398)
+|.|+||+|++|++++..|+..+... .|.. +..+.+.+ ..+.....+...... .. .++.+...+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~---~V~~--l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA---KVIC--LVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC---EEEE--EEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 58899999999999999999876311 1322 21222211 111111111111000 00 122222111
Q ss_pred -------ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 167 -------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 167 -------~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
.+..+++|+||.+++... ....-.++...|..-...+.+.+.+.
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~ 126 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASG 126 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhC
Confidence 233568999999887532 11223445567777777777776664
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.34 Score=44.91 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 46899999999999999999998874
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.26 Score=48.29 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (398)
|||.|+|++|++|..|...|. .+. . .+.+ +..+ +||.+.. ...+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~-~---v~a~-----~~~~-------~Ditd~~-----------~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF-E---VIAT-----DRAE-------LDITDPD-----------AVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc-e---EEec-----cCcc-------ccccChH-----------HHHHHHHhhCCC
Confidence 469999999999999988776 221 1 1222 2211 3333322 1122223 458
Q ss_pred EEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.++.+.. +...++...+..|+.-...+++..+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 9999887764 333457777889999999999999986 67777666
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.3 Score=38.41 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=68.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc--hhhHHHHHHHHhhhcCCCcceEEEe-cC---------
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIG-IN--------- 165 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~--~~~l~g~a~DL~d~~~~~~~~v~i~-~~--------- 165 (398)
.+.|+||+|.+|..++..|+..+-. .+.+ . .++ .+.++....++.... .++.+. .|
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~--~--~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVIL--T--SRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEE--E--ESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEE--e--eecccccccccccccccccc----cccccccccccccccccc
Confidence 5889999999999999999998431 1333 2 444 555665666665222 122211 11
Q ss_pred ----cccccCCCcEEEEeCCCCCC-CCCc--h---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 166 ----PYELFEDAEWALLIGAKPRG-PGME--R---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 166 ----~~eal~dADiViitag~~rk-~g~~--r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
-.+....-|++|.++|.... +..+ . .+.+..|..-...+.+.+... +++.+|+++-...
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ--GGGKIVNISSIAG 138 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH--TTEEEEEEEEGGG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehheec--cccceEEecchhh
Confidence 12345688999999887642 2111 1 134566655555566665552 5888888885544
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.18 Score=49.46 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| .|.+|..++..|+..+. .+.+ + |++.. .+ ++.+.. .....+..++.++||+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v--~--~~~~~-~~----~~~~~g------~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHV--T--TIGPV-AD----ELLSLG------AVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--eCCHh-HH----HHHHcC------CeecCCHHHHHhcCCEE
Confidence 4899999 69999999999998874 2433 3 44432 22 222111 12234566778999999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9864
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.54 Score=46.81 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++||+|+||+|.+|..++..|...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 46999999999999999999888764
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.21 Score=46.26 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|++|.|+||+|.+|++++..|+..|.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~ 26 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW 26 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC
Confidence 45799999999999999999998874
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.71 Score=43.83 Aligned_cols=80 Identities=20% Similarity=0.113 Sum_probs=44.9
Q ss_pred CEEEEEcC--CCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-------Ccc
Q 015897 97 VNIAVSGA--AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPY 167 (398)
Q Consensus 97 ~KI~IiGA--~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~ 167 (398)
+++.|+|| ++.+|..++..|+..|. .+.+ .+.+.+++.++..+.++......+..++.-.. ...
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~-----~v~l--~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGA-----EVVL--TGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCC-----EEEE--ecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 57899998 68999999999998875 2433 43333344444444444321100101111000 012
Q ss_pred cccCCCcEEEEeCCCC
Q 015897 168 ELFEDAEWALLIGAKP 183 (398)
Q Consensus 168 eal~dADiViitag~~ 183 (398)
+.+...|++|..+|..
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 3356789999988764
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.9 Score=45.82 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH-HHHHHhhhcCCCcceEEEecCcccccCCCcEEEEeCCCCCCCC
Q 015897 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187 (398)
Q Consensus 109 G~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g-~a~DL~d~~~~~~~~v~i~~~~~eal~dADiViitag~~rk~g 187 (398)
|..++..|+..|. .|.+ + |++++.++. ....+.+. .+++.+++.+++++||+||++...+
T Consensus 32 G~~MA~~La~aG~-----~V~v--~--Dr~~~~l~~~~~~~l~~~------Gi~~asd~~eaa~~ADvVIlaVP~~---- 92 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVL--A--EPNRSILSEELWKKVEDA------GVKVVSDDAEAAKHGEIHILFTPFG---- 92 (342)
T ss_pred HHHHHHHHHhCCC-----eEEE--E--ECCHHHhhHHHHHHHHHC------CCEEeCCHHHHHhCCCEEEEECCCc----
Confidence 7788888888764 3543 3 566554322 11122211 2345567778899999999884311
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 188 ~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..++++.+.+.....++.+|+..+
T Consensus 93 -----------~~v~~Vl~~L~~~L~~g~IVId~S 116 (342)
T PRK12557 93 -----------KKTVEIAKNILPHLPENAVICNTC 116 (342)
T ss_pred -----------HHHHHHHHHHHhhCCCCCEEEEec
Confidence 123344444544434566666554
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.26 Score=48.98 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.++|+|+| .|.||..++..|..-|. .+. .+ |+..+... ... .+.-..+..+.+++||+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG~-----~V~--~~--~~~~~~~~----~~~--------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWGF-----PLR--CW--SRSRKSWP----GVQ--------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEE--EE--eCCCCCCC----Cce--------eecccccHHHHHhcCCE
Confidence 36999999 69999999999987654 232 23 43322111 000 01011246788999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+++.... ..|..++. .+.++.. .|++++||++
T Consensus 194 vv~~lPlt-----------~~T~~li~--~~~l~~m-k~ga~lIN~a 226 (312)
T PRK15469 194 LINLLPNT-----------PETVGIIN--QQLLEQL-PDGAYLLNLA 226 (312)
T ss_pred EEECCCCC-----------HHHHHHhH--HHHHhcC-CCCcEEEECC
Confidence 99974321 11223332 3345554 6899999988
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.90 E-value=1 Score=44.38 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (398)
...|.|+||++.+|..+|+.++..+- .+++ .|+|.+..+..+..+++..-.+.-.+.++. .-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl----~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVL----WDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEE----EeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 45889999988899999999999875 2444 367777776666666643100000111211 14
Q ss_pred ccccCCCcEEEEeCCC-CCCCCCc--hhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAK-PRGPGME--RAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~-~rk~g~~--r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.++..+.|++|..||. +-++.++ +.+ .++.| ..+.+...+.+.+. .+|.|+.++-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~IaS 173 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIAS 173 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEehh
Confidence 5778899999998886 3444432 222 23334 45688899999984 7888877763
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=2 Score=39.74 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4789999999999999999998774
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.47 Score=48.96 Aligned_cols=91 Identities=10% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...+|+|+|+ |.+|..++..+...|. .|.. + |.++.++....++ .+ .+ ....++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV--~--d~dp~r~~~A~~~------G~----~v-~~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIV--T--EVDPIRALEAAMD------GF----RV-MTMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEE--E--eCChhhHHHHHhc------CC----Ee-CCHHHHHhcCC
Confidence 3569999995 9999999998887664 2433 3 4444443212211 11 11 12356789999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+||.+.|. ..++..- .+... .+++++++++-.
T Consensus 253 VVItaTG~---------------~~vI~~~--~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATGN---------------KDVIRGE--HFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEECCC
Confidence 99887552 2344331 22332 578999999875
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.43 Score=49.50 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...+|+|+|+ |.+|..++..+...|. .|.+ + |+++.++....++ ++ . + .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV--~--d~dp~ra~~A~~~------G~--~--v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIV--T--EVDPICALQAAMD------GF--R--V-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--cCCchhhHHHHhc------CC--E--e-cCHHHHHhCCC
Confidence 3469999995 9999999999988775 2443 3 5555554322221 11 1 1 13467788999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+||.+.|. ..++.. ..+... .+++++++++-+-+
T Consensus 270 VVI~aTG~---------------~~vI~~--~~~~~m-K~GailiNvG~~d~ 303 (425)
T PRK05476 270 IFVTATGN---------------KDVITA--EHMEAM-KDGAILANIGHFDN 303 (425)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCCEEEEcCCCCC
Confidence 99887553 223332 122332 57899999996643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.5 Score=44.11 Aligned_cols=127 Identities=24% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---CcccccC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELFE 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~eal~ 171 (398)
+-.+|+|+|+ |.+|...++.....+ +. +.. +|+++++++ .+++|-. +..+.. +..++++
T Consensus 166 pG~~V~I~G~-GGlGh~avQ~Aka~g-a~----Via----~~~~~~K~e-~a~~lGA-------d~~i~~~~~~~~~~~~ 227 (339)
T COG1064 166 PGKWVAVVGA-GGLGHMAVQYAKAMG-AE----VIA----ITRSEEKLE-LAKKLGA-------DHVINSSDSDALEAVK 227 (339)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC-Ce----EEE----EeCChHHHH-HHHHhCC-------cEEEEcCCchhhHHhH
Confidence 3579999995 888887777666566 22 432 478888876 6665531 222221 2223333
Q ss_pred C-CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc-hhHH-H-HHHHHCCCCCCceEE--
Q 015897 172 D-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC-NTNA-L-ICLKNAPSIPAKNFH-- 245 (398)
Q Consensus 172 d-ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~-d~~t-~-~~~k~~~~~~~kvig-- 245 (398)
+ +|+||.|.+ + .-+....+.+ .++|.++.+++|- ..+. . +..-...+ .++.|
T Consensus 228 ~~~d~ii~tv~-~---------------~~~~~~l~~l----~~~G~~v~vG~~~~~~~~~~~~~~li~~~--~~i~GS~ 285 (339)
T COG1064 228 EIADAIIDTVG-P---------------ATLEPSLKAL----RRGGTLVLVGLPGGGPIPLLPAFLLILKE--ISIVGSL 285 (339)
T ss_pred hhCcEEEECCC-h---------------hhHHHHHHHH----hcCCEEEEECCCCCcccCCCCHHHhhhcC--eEEEEEe
Confidence 3 999999976 3 2233333333 4799999999994 3322 1 11111112 25566
Q ss_pred ecCchhHHHHHHHHHH
Q 015897 246 ALTRLDENRAKCQLAL 261 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~ 261 (398)
.|+.-|..-+-.+.++
T Consensus 286 ~g~~~d~~e~l~f~~~ 301 (339)
T COG1064 286 VGTRADLEEALDFAAE 301 (339)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4566666666555443
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.24 Score=50.53 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCcceeeEE-eeccchhHhhhh--ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc
Q 015897 72 NDCYGVFCL-TYDLKAEEETKS--WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE 136 (398)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D 136 (398)
.+--+||++ .|-......... .-+..||+|||+ |.+|+.++..|+..|+ + .|+|+|-|
T Consensus 149 ~~~~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~-GG~GS~Va~~LAR~GV-g-----eI~LVD~D 209 (393)
T PRK06153 149 AEEDSVFNYPDTASSRAGIGALSAKLEGQRIAIIGL-GGTGSYILDLVAKTPV-R-----EIHLFDGD 209 (393)
T ss_pred cccCCceehhhhhccccChHHHHHHHhhCcEEEEcC-CccHHHHHHHHHHcCC-C-----EEEEECCC
Confidence 444689998 332222111111 112469999995 9999999999999997 3 23446655
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.38 Score=44.52 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV 45 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI 45 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC
Confidence 358999995 8899999999999997
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.39 Score=47.94 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...+|+||| +|..|...+..+....-+. .+.+ + |++.++++..+.++.+.. + .++....+..+++. +|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i~---~v~v--~--~r~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDLE---EVRV--Y--DRTKSSAEKFVERMSSVV-G--CDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCce---EEEE--E--CCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhh-CC
Confidence 457999999 5999999888777533222 2443 3 777788888887775421 2 23445555556665 99
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+|+++-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 998864
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.46 Score=46.84 Aligned_cols=67 Identities=18% Similarity=0.016 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..||.|+|+ |.+|..++..|...|. .|.+ .|++.++.+ .+.++ +. ......+..+.++++|+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v----~~r~~~~~~-~~~~~-----G~--~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA-----NVTV----GARKSAHLA-RITEM-----GL--SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHc-----CC--eeecHHHHHHHhCCCCE
Confidence 579999995 9999999999987663 2443 366654432 33221 11 11111234677899999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
||.+.
T Consensus 214 VI~t~ 218 (296)
T PRK08306 214 IFNTI 218 (296)
T ss_pred EEECC
Confidence 99985
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.3 Score=39.91 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc--eEEEec--C-----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIGI--N----- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~--~v~i~~--~----- 165 (398)
+.+.+.|+||+|.+|..++..|+..|. .+.+ .|++.+.++..+.++.... .... ...++. +
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-----~V~l----~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~v 84 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-----KVIV----TDIDQESGQATVEEITNLG-GEALFVSYDMEKQGDWQRVI 84 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHH
Confidence 346889999988999999999998774 2443 2566666665555554211 1100 111110 0
Q ss_pred --cccccCCCcEEEEeCCCCC
Q 015897 166 --PYELFEDAEWALLIGAKPR 184 (398)
Q Consensus 166 --~~eal~dADiViitag~~r 184 (398)
..+.+...|++|..+|..+
T Consensus 85 ~~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 85 SITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHHHcCCCCEEEECCCcCC
Confidence 1223457899999888654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.17 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
|+|.|+||+|.||.+++..|+..+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~ 24 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY 24 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC
Confidence 489999999999999999999874
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.41 Score=50.19 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-.+|+|+|. |.+|..++..+...|. .|.+ +|++..++. .+.+ + .+ .+ ....++++.+|+
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga-----~VIV----~e~dp~r~~-eA~~--~---G~--~v---v~leEal~~ADV 312 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGA-----RVIV----TEIDPICAL-QALM--E---GY--QV---LTLEDVVSEADI 312 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhhH-HHHh--c---CC--ee---ccHHHHHhhCCE
Confidence 469999995 9999999999876664 2433 355544432 1211 1 11 11 124567899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
||.+.|.. .++. ...+... .++++++|++-+.+.+-
T Consensus 313 VI~tTGt~---------------~vI~--~e~L~~M-K~GAiLiNvGr~~~eID 348 (477)
T PLN02494 313 FVTTTGNK---------------DIIM--VDHMRKM-KNNAIVCNIGHFDNEID 348 (477)
T ss_pred EEECCCCc---------------cchH--HHHHhcC-CCCCEEEEcCCCCCccC
Confidence 99876532 2221 2233443 68999999999744433
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.45 Score=49.14 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.++|.|+|+ |.+|..++..|+..|. .|.+ + |.+. +.++....+|... ...+.......+...++|
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~--~--d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVIL--T--DEKEEDQLKEALEELGEL----GIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--E--eCCchHHHHHHHHHHHhc----CCEEEeCCcchhHhhcCC
Confidence 468999996 8899999999999885 3544 3 4442 3333333344211 112222222224567899
Q ss_pred EEEEeCCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 175 WALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 175 iViitag~~r-k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+||.+.|.+. .| .....-..+++++...+...... + ..+|-+|-.+.
T Consensus 71 ~vv~~~g~~~~~~--~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~G 118 (450)
T PRK14106 71 LVVVSPGVPLDSP--PVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTNG 118 (450)
T ss_pred EEEECCCCCCCCH--HHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCCc
Confidence 9999887642 22 11122334566666655544432 3 45666766654
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.65 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV 51 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI 51 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC
Confidence 359999995 9999999999999997
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.6 Score=40.46 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
|.++.|+||+|.+|.+++..|+..|. .+.+. + .++.+.++....++.
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~-----~v~~~-~--~~~~~~~~~~~~~~~ 47 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGY-----TVAVN-Y--QQNLHAAQEVVNLIT 47 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE-e--CCChHHHHHHHHHHH
Confidence 34789999999999999999998774 24331 1 345555554555554
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.46 Score=44.88 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.||..++..|+..|.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~ 33 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA 33 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35789999999999999999999875
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.51 Score=48.37 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+||| .|.||..++..|..-|. .+. .+ |+.....+ ...+ . .+....+..+.+++||+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~afG~-----~V~--~~--d~~~~~~~-~~~~---~------g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPFNC-----NLL--YH--DRLKMDPE-LEKE---T------GAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEE--EE--CCCCcchh-hHhh---c------CceecCCHHHHHhhCCE
Confidence 35999999 59999999999986553 232 23 44322111 1111 1 11122356788899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|++..... .+ +-.++. .+.+... .|++++||++
T Consensus 259 V~l~lPlt----~~-------T~~li~--~~~l~~m-k~ga~lIN~a 291 (386)
T PLN03139 259 VVINTPLT----EK-------TRGMFN--KERIAKM-KKGVLIVNNA 291 (386)
T ss_pred EEEeCCCC----HH-------HHHHhC--HHHHhhC-CCCeEEEECC
Confidence 99974211 11 112221 2344454 6899999987
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.57 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~ 25 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY 25 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 5899999999999999998877654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.38 Score=50.48 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....++.... ......++. + .
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-----RLLI----IDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQI 337 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999874 2443 3667666665554432111 000111111 0 1
Q ss_pred ccccCCCcEEEEeCCCCC--CCC--Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~r--k~g--~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+..-|++|..+|... .+- .+. ...+..|..-...+.+.+-.+-..++.||+++.-
T Consensus 338 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 338 QARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred HHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 122345799999888642 221 121 2335555444333343333321245778888754
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.41 Score=46.99 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=42.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..||+|+|+ |.+|..++..|...|. .|.+ .+++.+++.. +.++ .. ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v----~~R~~~~~~~-~~~~-----g~-~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFV----GARSSADLAR-ITEM-----GL-IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH-HHHC-----CC-eeec-HHHHHHHhccCCE
Confidence 369999995 9999999999988764 2443 3666554432 1111 11 0111 1234577899999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
||.+.
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99975
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.3 Score=41.66 Aligned_cols=115 Identities=13% Similarity=0.026 Sum_probs=73.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-------Ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~ea 169 (398)
-.|.|.|++..||-.+|..+.+-|- +|.+ ..+++++|.......-+.. ....++--.. -..+.
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN-----~VIi----~gR~e~~L~e~~~~~p~~~-t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGN-----TVII----CGRNEERLAEAKAENPEIH-TEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCC-----EEEE----ecCcHHHHHHHHhcCcchh-eeeecccchhhHHHHHHHHHhh
Confidence 4899999989999999999987653 3444 3788888875443322211 1111111000 12356
Q ss_pred cCCCcEEEEeCCCCCCCCCc-----h---hhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 FEDAEWALLIGAKPRGPGME-----R---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~-----r---~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+-+-+++|..+|..|....+ . .+.+..| +.+...+.+.+.+ .|+|-||++|-
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~--q~~a~IInVSS 139 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR--QPEATIINVSS 139 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCceEEEecc
Confidence 67889999999988754332 1 1223333 5667888888888 48999999984
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.5 Score=42.44 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCch--------------------HHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH-HHHHHhhhcC
Q 015897 96 MVNIAVSGAAGMI--------------------ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLF 154 (398)
Q Consensus 96 ~~KI~IiGA~G~v--------------------G~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g-~a~DL~d~~~ 154 (398)
++||+|-|| ||- |+++|..++..|. .++| .|.|.+..+- +-..++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH-----DVVL----aePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH-----DVVL----AEPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC-----cEEe----ecCCccccCHHHHHHHHhc--
Confidence 478888885 652 6778888887764 3655 2444333221 12222332
Q ss_pred CCcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 155 ~~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
.+.+++||.++.+.+++.|+.--. -..+..|.++|...+.+ +++ +.|.|..-
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTPF-----------Gk~T~~Iarei~~hvpE----gAV---icnTCT~s 120 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTPF-----------GKATFGIAREILEHVPE----GAV---ICNTCTVS 120 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEeccc-----------chhhHHHHHHHHhhCcC----CcE---ecccccCc
Confidence 477889999999999998764211 12346777887766654 333 45666543
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.77 Score=45.17 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=48.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-----------------chhhHHHHHHHHhhhcCCCcce
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLRE 159 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-----------------~~~~l~g~a~DL~d~~~~~~~~ 159 (398)
.||.|+|+ |.+|..++..|+..|+-. |. |+|-|. ...+++..+..|++.. |. .+
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGVg~----it--I~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~ 90 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGVKS----VT--LHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PY-VP 90 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCCe----EE--EEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CC-CE
Confidence 49999995 999999999999999822 43 355432 1234444444455433 32 23
Q ss_pred EEEec--CcccccCCCcEEEEeC
Q 015897 160 VKIGI--NPYELFEDAEWALLIG 180 (398)
Q Consensus 160 v~i~~--~~~eal~dADiViita 180 (398)
+...+ .+.+.+++.|+||.+.
T Consensus 91 V~~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 91 VTVSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEEEeccCCHHHHhcCCEEEEec
Confidence 33332 2567899999998885
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.51 Score=43.75 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-CCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dAD 174 (398)
.++|+|+| .|++|++++..|...|. .|.+ .|++.++++..+.++. .... +..+.+ .++|
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~-----~Vvv----~D~~~~~~~~~~~~~g---------~~~v-~~~~l~~~~~D 87 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA-----KLIV----ADINEEAVARAAELFG---------ATVV-APEEIYSVDAD 87 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHcC---------CEEE-cchhhccccCC
Confidence 46899999 59999999999998875 2443 4677666654443321 1111 123333 3899
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+++.++
T Consensus 88 v~vp~A 93 (200)
T cd01075 88 VFAPCA 93 (200)
T ss_pred EEEecc
Confidence 998765
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.25 E-value=2.6 Score=39.60 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+.+.|+||+|.||.+++..|+..|.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~ 35 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC 35 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998874
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.77 Score=43.22 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998874
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.2 Score=43.21 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-CCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dAD 174 (398)
|+||+|||+ |.+|..++..|...+.+ ++...+ +.+...++.. .++.. .+.+++ +.+++ .+.|
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~----~l~~v~-~~~~~~~~~~---~~~~~-------~~~~~~-d~~~l~~~~D 63 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDL----RVDWVI-VPEHSIDAVR---RALGE-------AVRVVS-SVDALPQRPD 63 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCc----eEEEEE-EcCCCHHHHh---hhhcc-------CCeeeC-CHHHhccCCC
Confidence 579999995 99999999888765322 243322 2232222211 11111 123333 34444 5689
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+|+.+.+
T Consensus 64 vVve~t~ 70 (265)
T PRK13303 64 LVVECAG 70 (265)
T ss_pred EEEECCC
Confidence 9999875
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.34 Score=47.90 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+|||.+|.||..++..|+..+. ++.+ + +.. +.+..+..++||+
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~ga-----tVtv--~--~~~------------------------t~~l~e~~~~ADI 205 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHC-----SVTV--V--HSR------------------------STDAKALCRQADI 205 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC-----EEEE--E--CCC------------------------CCCHHHHHhcCCE
Confidence 56999999756999999999998774 3443 2 221 0145677789999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-CC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NP 224 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP 224 (398)
||.+.|.+. ++.... . .|+++||.++ |+
T Consensus 206 VIsavg~~~---------------~v~~~~-----i-k~GaiVIDvgin~ 234 (301)
T PRK14194 206 VVAAVGRPR---------------LIDADW-----L-KPGAVVIDVGINR 234 (301)
T ss_pred EEEecCChh---------------cccHhh-----c-cCCcEEEEecccc
Confidence 999887652 111111 3 6899999888 44
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.68 Score=43.38 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~ 40 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA 40 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999998875
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.5 Score=47.38 Aligned_cols=74 Identities=24% Similarity=0.197 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
....++|||+ |..+..-+..+..---+. +|.+ + +++++..+..+.++.... + .++....+.++++++||
T Consensus 129 da~~laiIGa-G~qA~~ql~a~~~v~~~~---~I~i--~--~r~~~~~e~~a~~l~~~~-~--~~v~a~~s~~~av~~aD 197 (330)
T COG2423 129 DASTLAIIGA-GAQARTQLEALKAVRDIR---EIRV--Y--SRDPEAAEAFAARLRKRG-G--EAVGAADSAEEAVEGAD 197 (330)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhhCCcc---EEEE--E--cCCHHHHHHHHHHHHhhc-C--ccceeccCHHHHhhcCC
Confidence 4678999995 998888777766533222 3444 4 788899998998887643 2 24555567799999999
Q ss_pred EEEEe
Q 015897 175 WALLI 179 (398)
Q Consensus 175 iViit 179 (398)
+|+.+
T Consensus 198 iIvt~ 202 (330)
T COG2423 198 IVVTA 202 (330)
T ss_pred EEEEe
Confidence 99875
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.56 Score=43.43 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.||.|+|+ |.+|+.++..|+..|+
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV 43 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI 43 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 59999995 8899999999999997
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.55 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 359999995 9999999999999986
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=92.05 E-value=3 Score=39.54 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=33.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
..+.|+||+|.+|.+++..|+..|. .|.+ . .+++++.++....++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-----~V~~--~-~~~~~~~~~~~~~~l~ 47 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-----RVVL--H-YHRSAAAASTLAAELN 47 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-----eEEE--E-cCCcHHHHHHHHHHHH
Confidence 3688999999999999999999875 2443 1 1344566766666664
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.46 Score=49.85 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (398)
.+.+.|+||++.+|..++..|+..|. .|.+ .+++.+.++....++.... ......++. ..
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 73 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGD-----QVVV----ADRNVERARERADSLGPDH--HALAMDVSDEAQIREGFEQL 73 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce--eEEEeccCCHHHHHHHHHHH
Confidence 35788999999999999999998874 2443 3666677665555442111 000111111 01
Q ss_pred ccccCCCcEEEEeCCCC---CCC--CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKP---RGP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~---rk~--g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|.. ..+ ..+- ...+..|. .+.+...+.+.+. ..++.||+++.
T Consensus 74 ~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~~iv~isS 141 (520)
T PRK06484 74 HREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQ-GHGAAIVNVAS 141 (520)
T ss_pred HHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCeEEEECC
Confidence 22335689999988762 111 1111 12344443 3556666666553 33447777763
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.5 Score=42.89 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .+++ . |++ .+.++..+.++.... .++.. ..| +.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga-----~Vv~--~--~~~~~~~~~~~~~~i~~~g----~~~~~~~~Dv~d~~~~~ 78 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA-----TVVV--N--DVASALDASDVLDEIRAAG----AKAVAVAGDISQRATAD 78 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--e--cCCchhHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHH
Confidence 46899999999999999999998875 2443 2 332 334555555554321 11111 111 11
Q ss_pred c------ccCCCcEEEEeCCCCC
Q 015897 168 E------LFEDAEWALLIGAKPR 184 (398)
Q Consensus 168 e------al~dADiViitag~~r 184 (398)
+ .+...|++|..+|..+
T Consensus 79 ~~~~~~~~~g~iD~li~nAG~~~ 101 (306)
T PRK07792 79 ELVATAVGLGGLDIVVNNAGITR 101 (306)
T ss_pred HHHHHHHHhCCCCEEEECCCCCC
Confidence 1 1346899999988764
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.87 Score=44.94 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEe-cccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L-~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
+-.|++-+|-+.||+.++...-+.-|+ .+.+.. -+.+.+++.+ ..+..+... ....++++.|.++++++|
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~-----dv~ia~Pk~~~p~~~~~-~~a~~~a~~---~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM-----DVRIATPKGYEPDPEVV-EKAKENAKE---SGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC-----eEEEECCCcCCcCHHHH-HHHHHHHHh---cCCeEEEecCHHHHhCCC
Confidence 457999999866677777666555554 132210 1112222222 244433221 134788999999999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHH-HHHHHHHHHhcCCCeEEE
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIF-AEQGKALNAVASRNVKVI 219 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~-~~i~~~i~~~a~p~a~vI 219 (398)
|+|..-.-... |++-...-.++.-.- .++-.++.+.|.++++++
T Consensus 223 DvvyTDvWvSM--Gee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifm 267 (310)
T COG0078 223 DVVYTDVWVSM--GEEAEAEERRIAFLPPYQVNEELMALAGPDAIFM 267 (310)
T ss_pred CEEEecCcccC--cchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEE
Confidence 99887544332 222211111211111 234445555566666653
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.2 Score=40.94 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=59.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCC-cceEEEecC--cccc-----
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPL-LREVKIGIN--PYEL----- 169 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~-~~~v~i~~~--~~ea----- 169 (398)
|.|+||+|.+|..++..|+..|. .+.+ . +++ .+.++....++.+..... .....++.. ..+.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-----KVII--T--YRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIE 71 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999998874 2432 2 333 244444555554322000 001111100 0111
Q ss_pred --cCCCcEEEEeCCCCC-CC--CCc---hhhhHHHHHHHHHHHHHHHHHhc--CCCeEEEEECCC
Q 015897 170 --FEDAEWALLIGAKPR-GP--GME---RAGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGNP 224 (398)
Q Consensus 170 --l~dADiViitag~~r-k~--g~~---r~dll~~N~~i~~~i~~~i~~~a--~p~a~vIvvtNP 224 (398)
+...|+||..+|... .+ ..+ -...+..|..-...+.+.+.++. ...+.+++++-.
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 72 EELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 234699999887532 11 111 12345566655444544443321 134566666644
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.38 Score=44.82 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=41.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-Eec----CcccccCCC
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI----NPYELFEDA 173 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~----~~~eal~dA 173 (398)
|+|+||+|++|++++..|+..+. +|.. |. .|.+.+ .+..|++.. . .+. ... ...++|+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~-l~-R~~~~~----~~~~l~~~g--~--~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRA-LV-RDPSSD----RAQQLQALG--A--EVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEE-EE-SSSHHH----HHHHHHHTT--T--EEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEE-EE-eccchh----hhhhhhccc--c--eEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999553 3543 22 232222 223333321 1 111 111 234689999
Q ss_pred cEEEEeCCC
Q 015897 174 EWALLIGAK 182 (398)
Q Consensus 174 DiViitag~ 182 (398)
|.|+++-+.
T Consensus 66 d~v~~~~~~ 74 (233)
T PF05368_consen 66 DAVFSVTPP 74 (233)
T ss_dssp SEEEEESSC
T ss_pred ceEEeecCc
Confidence 999987653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.64 Score=55.06 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=47.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
|.++||+||| .|.+|..++..|+..|. ++.. + |++.++++.. .+.. .....+..+.+++|
T Consensus 322 ~~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l----~~~G------a~~~~s~~e~~~~a 381 (1378)
T PLN02858 322 KPVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCG--Y--DVYKPTLVRF----ENAG------GLAGNSPAEVAKDV 381 (1378)
T ss_pred cCCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHH----HHcC------CeecCCHHHHHhcC
Confidence 4458999999 69999999999998875 2433 3 6666665432 2211 11234567888999
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|+||++..
T Consensus 382 DvVi~~V~ 389 (1378)
T PLN02858 382 DVLVIMVA 389 (1378)
T ss_pred CEEEEecC
Confidence 99999754
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.46 Score=43.01 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-.+|+|+| .|.||..++..+..-|. .|.. + |+...... ...+.. +. ..+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~~~----~~~~~~------~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG--Y--DRSPKPEE----GADEFG------VE-YVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE--E--ESSCHHHH----HHHHTT------EE-ESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE--e--cccCChhh----hccccc------ce-eeehhhhcchhhh
Confidence 46999999 59999999999987665 2332 3 55433222 111111 11 2356788899999
Q ss_pred EEEeCC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag-~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|+++.. .+...++ + |.+ .+++. .+++++||++--
T Consensus 95 v~~~~plt~~T~~l-----i--~~~-------~l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRGL-----I--NAE-------FLAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTTS-----B--SHH-------HHHTS-TTTEEEEESSSG
T ss_pred hhhhhcccccccee-----e--eee-------eeecc-ccceEEEeccch
Confidence 998743 2221121 1 111 23333 689999999855
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.55 Score=48.41 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=42.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-----Cccc-cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYE-LF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-----~~~e-al 170 (398)
|||.|+|+ |.+|.+++..|...+. ++.+ +|.+.++++....++. .++..+. ...+ .+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-----~v~v----id~~~~~~~~~~~~~~-------~~~~~gd~~~~~~l~~~~~ 63 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-----DVTV----IDTDEERLRRLQDRLD-------VRTVVGNGSSPDVLREAGA 63 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhhcC-------EEEEEeCCCCHHHHHHcCC
Confidence 58999995 9999999999988764 3443 4777676553322110 0111111 1122 37
Q ss_pred CCCcEEEEeCC
Q 015897 171 EDAEWALLIGA 181 (398)
Q Consensus 171 ~dADiViitag 181 (398)
+++|.||++.+
T Consensus 64 ~~a~~vi~~~~ 74 (453)
T PRK09496 64 EDADLLIAVTD 74 (453)
T ss_pred CcCCEEEEecC
Confidence 89999988753
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.84 Score=49.19 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhH------HHHHHHHhhhcCCCc-ceEEEecCcc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL------EGVAMELEDSLFPLL-REVKIGINPY 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l------~g~a~DL~d~~~~~~-~~v~i~~~~~ 167 (398)
+..||+|+| .|.+|++++..|+..|+.. |. .+|.|.-...+ ...+.++.... .+. -+.....+..
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~----I~--~vd~D~v~SNlnRIgEl~e~A~~~n~~v-~v~~i~~~~~~dl~ 199 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPR----FH--AIVTDAEEHALDRIHELAEIAEETDDAL-LVQEIDFAEDQHLH 199 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCc----EE--EEeccccchhhhHHHHHHHHHHHhCCCC-ceEeccCCcchhHH
Confidence 457999999 6999999999999999843 42 33344332211 22233311110 000 0111223467
Q ss_pred cccCCCcEEEEeCCCC
Q 015897 168 ELFEDAEWALLIGAKP 183 (398)
Q Consensus 168 eal~dADiViitag~~ 183 (398)
+.+++.|+||..+..+
T Consensus 200 ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 200 EAFEPADWVLYVSDNG 215 (637)
T ss_pred HhhcCCcEEEEECCCC
Confidence 8999999999987654
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=3.1 Score=38.85 Aligned_cols=25 Identities=24% Similarity=0.103 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++|.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~ 27 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF 27 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4688999999999999999998874
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.38 Score=48.58 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=54.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-CCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-~~~~~v~i~~~~~eal~dADi 175 (398)
++|+|+| .|.||..++..|..-|. .|.. + |++..........+..... .+........+..+.+++||+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG~-----~V~~--~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFGV-----KLLA--T--RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE--E--CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence 6999999 69999999999876654 2432 3 5442211100000000000 000000012356789999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|++..... + .|-.++. .+.++.. .|++++||++=
T Consensus 230 Vvl~lPlt--~---------~T~~li~--~~~l~~M-k~ga~lINvaR 263 (347)
T PLN02928 230 VVLCCTLT--K---------ETAGIVN--DEFLSSM-KKGALLVNIAR 263 (347)
T ss_pred EEECCCCC--h---------HhhcccC--HHHHhcC-CCCeEEEECCC
Confidence 99974221 1 1112222 2344444 68999999983
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.29 Score=49.02 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-+||+||| .|.+|..++..|+. + ++. .|. .+ |++.... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~-~-~g~--~V~--~~--d~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAK-G-YGS--DVV--AY--DPFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-c-CCC--EEE--EE--CCCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 46999999 59999999999853 2 221 232 23 4443221 0110 1122356788999999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99875
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.27 Score=46.35 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++|.|+||+|.+|..++..|+..|.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHCCC
Confidence 6899999999999999999998774
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=91.58 E-value=2.3 Score=39.38 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=30.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
|.|+||+|.+|.+++..|+..|. .+.+ .+ ..+.+.++....++.+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-----~v~~--~~-~~~~~~~~~~~~~l~~ 45 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-----EICV--HY-HSGRSDAESVVSAIQA 45 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-----EEEE--Ee-CCCHHHHHHHHHHHHH
Confidence 46999999999999999998875 2433 21 2334455555555543
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.64 Score=47.34 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-----------------chhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||.|+|+ |.+|+.++..|+..|+ + .+. |+|-|. ...+++..+..|.+.. +..
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g---~i~--lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v- 205 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV-G---TLG--IVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDV- 205 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-C---eEE--EEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCC-
Confidence 358999995 9999999999999997 2 143 455541 1345555555555443 321
Q ss_pred eEEEecC------cccccCCCcEEEEeCC
Q 015897 159 EVKIGIN------PYELFEDAEWALLIGA 181 (398)
Q Consensus 159 ~v~i~~~------~~eal~dADiViitag 181 (398)
++..... ..+.++++|+||.+..
T Consensus 206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d 234 (376)
T PRK08762 206 QVEAVQERVTSDNVEALLQDVDVVVDGAD 234 (376)
T ss_pred EEEEEeccCChHHHHHHHhCCCEEEECCC
Confidence 2221111 1235789999998754
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.16 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
||.|+||+|++|++++..|+..+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999998764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.8 Score=39.78 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|.++.|+||+|.+|++++..|+..|.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~ 26 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW 26 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC
Confidence 45899999999999999999988764
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.48 Score=46.45 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--CcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (398)
.+++.|+|| |..|.++++.|+..+.. .|.+ .+++.++++..+.++.+.. +.. .+.... +..+.+.++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~ka~~La~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 195 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GRE-AVVGVDARGIEDVIAAA 195 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EcCCHHHHHHHHHHHhhcc-Ccc-eEEecCHhHHHHHHhhc
Confidence 458999995 99999999999987762 2544 3788888887777664221 110 111111 112345789
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+||.+-
T Consensus 196 divINaT 202 (283)
T PRK14027 196 DGVVNAT 202 (283)
T ss_pred CEEEEcC
Confidence 9999864
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.8 Score=41.18 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.+.|+||++.||.+++..|+..|.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~ 33 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGA 33 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5788999999999999999998874
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.54 Score=49.36 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+|+| .|.||..++..+...|. .|.+ + |++..+.....+ + .+ . . .+..++++.||+
T Consensus 254 GKtVgVIG-~G~IGr~vA~rL~a~Ga-----~ViV--~--e~dp~~a~~A~~---~---G~--~--~-~~leell~~ADI 312 (476)
T PTZ00075 254 GKTVVVCG-YGDVGKGCAQALRGFGA-----RVVV--T--EIDPICALQAAM---E---GY--Q--V-VTLEDVVETADI 312 (476)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCCchhHHHHHh---c---Cc--e--e-ccHHHHHhcCCE
Confidence 46999999 59999999999987664 2433 3 444333321111 1 11 1 1 234677899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
||.+.|.+ .++. .+.+... .|+++++|++-.
T Consensus 313 VI~atGt~---------------~iI~--~e~~~~M-KpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNK---------------DIIT--LEHMRRM-KNNAIVGNIGHF 343 (476)
T ss_pred EEECCCcc---------------cccC--HHHHhcc-CCCcEEEEcCCC
Confidence 99975522 2222 1233443 689999999876
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.33 E-value=3 Score=44.08 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=29.3
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~ 210 (398)
+.++++|+||.+|+.-. ......+....|..-...+.+.+.+
T Consensus 108 ~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~ 149 (491)
T PLN02996 108 EMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKK 149 (491)
T ss_pred HHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999887543 2233455677888888888877766
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.55 Score=38.78 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=50.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----cccccCC
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELFED 172 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal~d 172 (398)
|.|+|. |.+|..++..|...+. ++.+ +|.+++..+....+.- .+..+. + ....+.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~-----~vvv----id~d~~~~~~~~~~~~--------~~i~gd~~~~~~l~~a~i~~ 62 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGI-----DVVV----IDRDPERVEELREEGV--------EVIYGDATDPEVLERAGIEK 62 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS-----EEEE----EESSHHHHHHHHHTTS--------EEEES-TTSHHHHHHTTGGC
T ss_pred eEEEcC-CHHHHHHHHHHHhCCC-----EEEE----EECCcHHHHHHHhccc--------ccccccchhhhHHhhcCccc
Confidence 679995 9999999999998652 3544 4677666553332211 121111 1 2345678
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||.||++.+. -..| ..++..+++. .|+..++...+
T Consensus 63 a~~vv~~~~~-----------d~~n----~~~~~~~r~~-~~~~~ii~~~~ 97 (116)
T PF02254_consen 63 ADAVVILTDD-----------DEEN----LLIALLAREL-NPDIRIIARVN 97 (116)
T ss_dssp ESEEEEESSS-----------HHHH----HHHHHHHHHH-TTTSEEEEEES
T ss_pred cCEEEEccCC-----------HHHH----HHHHHHHHHH-CCCCeEEEEEC
Confidence 8888877431 1223 3344445555 46666555443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.22 Score=53.19 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=81.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-----cCcCCCCCceEEEeccccc--ch---hhHHHHHHHHhhhcCCCcceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAA-----GEVLGPDQPIALKLLGSER--SL---QALEGVAMELEDSLFPLLREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~-----~~~~~~~~~i~L~L~d~D~--~~---~~l~g~a~DL~d~~~~~~~~v~i~~~~ 166 (398)
.||.|.|| |..|..++..|+. .|+-.++-.-.+.++|.+- .. +.+......+.+. .....+.
T Consensus 322 ~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-------~~~~~~L 393 (581)
T PLN03129 322 QRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-------HEPGASL 393 (581)
T ss_pred ceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-------cccCCCH
Confidence 69999995 9999999988876 3542221111233444320 01 1122222222221 1123468
Q ss_pred ccccCC--CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc---hhHHHHHHHHCCCCCC
Q 015897 167 YELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPA 241 (398)
Q Consensus 167 ~eal~d--ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~---d~~t~~~~k~~~~~~~ 241 (398)
.+++++ +|++|=+.+.+- -+-.++.+.|.++ +++.+|.-.+||. .....-+++.+.+ +
T Consensus 394 ~e~v~~vkptvLIG~S~~~g--------------~Ft~evi~~Ma~~-~~rPIIFaLSNPt~~~E~~pe~a~~~T~G--~ 456 (581)
T PLN03129 394 LEAVKAIKPTVLIGLSGVGG--------------TFTKEVLEAMASL-NERPIIFALSNPTSKAECTAEEAYTWTGG--R 456 (581)
T ss_pred HHHHhccCCCEEEEecCCCC--------------CCCHHHHHHHHhc-CCCCEEEECCCCCCCcCcCHHHHHHhhcC--C
Confidence 899999 899887655431 1345677777887 6999999999996 5666777776633 2
Q ss_pred ceEEecCchhHHH
Q 015897 242 KNFHALTRLDENR 254 (398)
Q Consensus 242 kvig~gt~lDs~R 254 (398)
-+|.+|+-.+...
T Consensus 457 ai~AtGSPf~pv~ 469 (581)
T PLN03129 457 AIFASGSPFDPVE 469 (581)
T ss_pred EEEEeCCCCCCee
Confidence 4788887666544
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.45 Score=47.73 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.|+||+|+||+|..|..|...|...+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 378999999999999999999988764
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=91.07 E-value=3.5 Score=39.67 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
+..+..||.|||+ |.+|+.++..|+..|
T Consensus 7 ~~~~~~~V~vvG~-GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 7 LLSRPVSVVLVGA-GGTGSQVIAGLARLH 34 (244)
T ss_pred HHhCCCeEEEEcC-ChHHHHHHHHHHHcc
Confidence 3356789999995 999999999999875
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.2 Score=43.17 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=75.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc----CcCCCC--CceEEEecccc----cchhhHHHHHHHHhhhcCCCcceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSE----RSLQALEGVAMELEDSLFPLLREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~----~~~~~~--~~i~L~L~d~D----~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~ 166 (398)
.||.|+|| |..|..++..|+.. |+-.++ +.+.| +|.+ .+.+.+......+.+...+. ....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~l--vD~~Gll~~~r~~l~~~~~~~a~~~~~~----~~~~~L 98 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWL--VDSKGLLTDDREDLNPHKKPFARKTNPE----KDWGSL 98 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE--EETTEEEBTTTSSHSHHHHHHHBSSSTT----T--SSH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEE--EeccceEeccCccCChhhhhhhccCccc----ccccCH
Confidence 59999995 99999999988877 762110 23443 4332 01122333333333322111 111467
Q ss_pred ccccCCC--cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch---hHHHHHHHHCCCCCC
Q 015897 167 YELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPA 241 (398)
Q Consensus 167 ~eal~dA--DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~~~~~~~ 241 (398)
.|+++++ |++|=+.+.+. -+-+++.+.|.++ +++.+|.=.+||.. ...+-+++.+.+
T Consensus 99 ~eav~~~kPtvLIG~S~~~g--------------~ft~evv~~Ma~~-~erPIIF~LSNPt~~aE~~peda~~~t~g--- 160 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQGG--------------AFTEEVVRAMAKH-NERPIIFPLSNPTPKAECTPEDAYEWTDG--- 160 (255)
T ss_dssp HHHHHCH--SEEEECSSSTT--------------SS-HHHHHHCHHH-SSSEEEEE-SSSCGGSSS-HHHHHHTTTS---
T ss_pred HHHHHhcCCCEEEEecCCCC--------------cCCHHHHHHHhcc-CCCCEEEECCCCCCcccCCHHHHHhhCCc---
Confidence 8999999 99988766442 2456778888888 69999999999976 344556665532
Q ss_pred ce-EEecCchh
Q 015897 242 KN-FHALTRLD 251 (398)
Q Consensus 242 kv-ig~gt~lD 251 (398)
+. |.+|+-.+
T Consensus 161 ~ai~AtGSpf~ 171 (255)
T PF03949_consen 161 RAIFATGSPFP 171 (255)
T ss_dssp EEEEEESS---
T ss_pred eEEEecCCccC
Confidence 44 57766533
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.59 Score=47.29 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-----------------chhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||.|+|+ |.+|+.++..|+..|+-. +. |+|-|. ...+++..+..|.+.. |..
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~----i~--lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v- 98 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGH----IT--IIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDV- 98 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCe----EE--EEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCc-
Confidence 359999995 999999999999998722 33 355443 1234555555555443 321
Q ss_pred eEEEe-----c-CcccccCCCcEEEEeCC
Q 015897 159 EVKIG-----I-NPYELFEDAEWALLIGA 181 (398)
Q Consensus 159 ~v~i~-----~-~~~eal~dADiViitag 181 (398)
++... . +..+.++++|+||.+..
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d 127 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGSD 127 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECCC
Confidence 22211 1 12356899999998854
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=4.3 Score=39.20 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||++.||..++..|+..|.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~ 31 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA 31 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35889999999999999999998774
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=2.4 Score=40.24 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dA 173 (398)
.++|.|||| |.|+..=+..|+..+- .|.+ +-.+.+++ ++ ++... + .++.. .-..+++.++
T Consensus 25 ~~~VLVVGG-G~VA~RK~~~Ll~~gA-----~VtV--Vap~i~~e-l~----~l~~~--~---~i~~~~r~~~~~dl~g~ 86 (223)
T PRK05562 25 KIKVLIIGG-GKAAFIKGKTFLKKGC-----YVYI--LSKKFSKE-FL----DLKKY--G---NLKLIKGNYDKEFIKDK 86 (223)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--EcCCCCHH-HH----HHHhC--C---CEEEEeCCCChHHhCCC
Confidence 468999995 9999998888888663 2443 22233333 22 22211 1 22222 2245678999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC--chhHHHHHHH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNALICLK 234 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP--~d~~t~~~~k 234 (398)
++||.+.+.+ .+=..++...++ .+.++.++.+| ||.+.+.+.+
T Consensus 87 ~LViaATdD~---------------~vN~~I~~~a~~---~~~lvn~vd~p~~~dFi~PAiv~ 131 (223)
T PRK05562 87 HLIVIATDDE---------------KLNNKIRKHCDR---LYKLYIDCSDYKKGLCIIPYQRS 131 (223)
T ss_pred cEEEECCCCH---------------HHHHHHHHHHHH---cCCeEEEcCCcccCeEEeeeEEe
Confidence 9988875432 233334433333 36778888888 6655555443
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.89 Score=46.85 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
-++++.+|.|+||+|.+|.-+...|+.+|.
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf 104 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF 104 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCC
Confidence 346688999999999999999999999984
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.35 Score=46.71 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=80.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcC----CCC--CceEEEeccccc--chhh--HHHHHHHHhhhcCCCcceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVL----GPD--QPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~----~~~--~~i~L~L~d~D~--~~~~--l~g~a~DL~d~~~~~~~~v~i~~~~ 166 (398)
.||.|.|| |..|..++..|+..+.- .++ +.+. ++|.+- ..++ +...-..+.+.. ++-....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~--~vD~~Gll~~~r~~l~~~~~~~~~~~----~~~~~~~~L 98 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIW--XVDRKGLLVKNRKETCPNEYHLARFA----NPERESGDL 98 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEE--EECCCCeEeCCCCccCHHHHHHHHHc----CcccccCCH
Confidence 69999995 99999999888765431 111 1233 344320 0111 111112211111 111123568
Q ss_pred ccccC--CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch---hHHHHHHHHCCCCCC
Q 015897 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPA 241 (398)
Q Consensus 167 ~eal~--dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~~~~~~~ 241 (398)
.++++ ++|++|=+.+.+. -+-+++.+.|.++ +++.+|.-.+||.. ...+-+++.+.+ +
T Consensus 99 ~eav~~~kptvlIG~S~~~g--------------~ft~evv~~Ma~~-~~~PIIFaLSNPt~~aE~tpe~a~~~t~G--~ 161 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVGG--------------AFTPEVIRAXAEI-NERPVIFALSNPTSKAECTAEEAYTATEG--R 161 (254)
T ss_pred HHHHHhhCCCEEEEeCCCCC--------------CCCHHHHHHHhhc-CCCCEEEECCCcCCccccCHHHHHhhcCC--C
Confidence 89999 9999887665441 2345677778887 69999999999974 556667766532 3
Q ss_pred ceEEecCchhHHH
Q 015897 242 KNFHALTRLDENR 254 (398)
Q Consensus 242 kvig~gt~lDs~R 254 (398)
.+|.+|+....+.
T Consensus 162 ai~AtGspf~pv~ 174 (254)
T cd00762 162 AIFASGSPFHPVE 174 (254)
T ss_pred EEEEECCCCCCcc
Confidence 5788887755554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=4.4 Score=37.56 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~ 27 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGY 27 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC
Confidence 689999999999999999998764
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=90.39 E-value=4.1 Score=39.82 Aligned_cols=115 Identities=12% Similarity=-0.004 Sum_probs=62.1
Q ss_pred EEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--C-------ccccc
Q 015897 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--N-------PYELF 170 (398)
Q Consensus 101 IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~-------~~eal 170 (398)
|+||++.+|..++..|+..|.. .|.+ .+++++.++..+.++........ ....++. . ..+.+
T Consensus 2 ITGas~GIG~aia~~l~~~G~~----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 73 (308)
T PLN00015 2 ITGASSGLGLATAKALAETGKW----HVVM----ACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSG 73 (308)
T ss_pred EeCCCChHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999988721 2443 35666766655555532110000 0111111 0 01123
Q ss_pred CCCcEEEEeCCCCCC----CCCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPRG----PGMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~rk----~g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..-|++|..+|.... +..+.. ..+..| .-+.+.+.+.+.+.....+.||+++-
T Consensus 74 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS 137 (308)
T PLN00015 74 RPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGS 137 (308)
T ss_pred CCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEec
Confidence 467999998886321 122322 234444 34566777777663101467777654
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.6 Score=43.36 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+|||-+.-||..++..|+..+- .+.+ .|++-......+ ..+.|...+. .....+..+.++.||+
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~A-----tVti--~~~~~~~~~~~~--~~~~hs~t~~---~~~~~~l~~~~~~ADI 129 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGA-----RVYS--VDINGIQVFTRG--ESIRHEKHHV---TDEEAMTLDCLSQSDV 129 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCC-----EEEE--EecCcccccccc--cccccccccc---cchhhHHHHHhhhCCE
Confidence 46999999888899999999988763 3543 222211111110 0112211100 0000114577899999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||.+.|.|
T Consensus 130 VIsAvG~~ 137 (197)
T cd01079 130 VITGVPSP 137 (197)
T ss_pred EEEccCCC
Confidence 99998876
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=1 Score=40.75 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG 119 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~ 119 (398)
|++.|+||+|.+|..++..|+..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.94 Score=42.94 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998874
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.71 Score=44.93 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
..++|+||+|.||+.++..|+.+.- .+.| +. ++.++.....+.+... +..+.+ +.+.+|+- -++|++
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~-----~~~l--l~--r~aea~~rq~l~~l~e--~~~~~~-i~s~d~~~-~~e~i~ 234 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG-----VKEL--LL--RDAEARNRQRLTLLQE--ELGRGK-IMSLDYAL-PQEDIL 234 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC-----EEEE--ec--ccHHhhhhhhhhhccc--ccCCCe-eeeccccc-cccceE
Confidence 5899999999999999999987642 2444 22 3334444344433322 222333 33344554 456666
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (398)
|..+..|. |..|.-+. + .|.+||+-.+-|-|+-+++
T Consensus 235 v~vAs~~~------------g~~I~pq~------l-kpg~~ivD~g~P~dvd~~v 270 (351)
T COG5322 235 VWVASMPK------------GVEIFPQH------L-KPGCLIVDGGYPKDVDTSV 270 (351)
T ss_pred EEEeecCC------------Cceechhh------c-cCCeEEEcCCcCccccccc
Confidence 66555442 12222222 1 5888888888888776654
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.07 E-value=3.7 Score=40.89 Aligned_cols=115 Identities=12% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-e-----------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G----------- 163 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~----------- 163 (398)
...+.|+||++.||...+..|+..|. .|++. .+|.++.+..+.+|.... +. .++.+ .
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~Ga-----~Vv~~----~R~~~~~~~~~~~i~~~~-~~-~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRGA-----HVVLA----CRNEERGEEAKEQIQKGK-AN-QKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHHHHHhcC-CC-CceEEEECCCCCHHHHHH
Confidence 35788999999999999999999984 25553 577788888888888622 11 11111 1
Q ss_pred --cCcccccCCCcEEEEeCCCCCCCCCchhh---h-HHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 164 --INPYELFEDAEWALLIGAKPRGPGMERAG---L-LDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 164 --~~~~eal~dADiViitag~~rk~g~~r~d---l-l~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..-......-|+.|..||+-..|.....| + +..| .-+...+.+.++.. .| +.||++|-
T Consensus 104 fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s-~~-~RIV~vsS 171 (314)
T KOG1208|consen 104 FAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRS-AP-SRIVNVSS 171 (314)
T ss_pred HHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhC-CC-CCEEEEcC
Confidence 11234567889999998875433321111 1 2223 23566666777774 35 78777774
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.8 Score=39.00 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|+.++..|+..|.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~ 33 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA 33 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.53 Score=39.01 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=43.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (398)
+||+|||+ |.+|......+... +-+ .++ .++ |.+.++++..+.... +..+++..+.+. +.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~----~v~-~v~--d~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF----EVV-AVC--DPDPERAEAFAEKYG---------IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE----EEE-EEE--CSSHHHHHHHHHHTT---------SEEESSHHHHHHHTTE
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc----EEE-EEE--eCCHHHHHHHHHHhc---------ccchhHHHHHHHhhcC
Confidence 48999995 99999998877766 221 232 233 667677665543321 124556666666 79
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|+|+++..
T Consensus 64 D~V~I~tp 71 (120)
T PF01408_consen 64 DAVIIATP 71 (120)
T ss_dssp SEEEEESS
T ss_pred CEEEEecC
Confidence 99999753
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.5 Score=43.53 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.||+|+||+|.+|.-++..|...+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 4899999999999999999988764
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.6 Score=45.16 Aligned_cols=117 Identities=19% Similarity=0.108 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC---------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---------~ 166 (398)
..++.|+||+|.+|..++..|+..|. .+.+ ++.+.+.+.++....++.... ....++.. .
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga-----~vi~--~~~~~~~~~l~~~~~~~~~~~----~~~Dv~~~~~~~~~~~~~ 278 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA-----HVVC--LDVPAAGEALAAVANRVGGTA----LALDITAPDAPARIAEHL 278 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-----EEEE--EeCCccHHHHHHHHHHcCCeE----EEEeCCCHHHHHHHHHHH
Confidence 35899999999999999999998874 2332 333223344443333322100 01112110 0
Q ss_pred ccccCCCcEEEEeCCCCCCC---CCch---hhhHHHHHHHHHHHHHHHHH--hcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGP---GMER---AGLLDINGQIFAEQGKALNA--VASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~---g~~r---~dll~~N~~i~~~i~~~i~~--~a~p~a~vIvvtN 223 (398)
.+.+...|+||.++|..+.. .++. ...+..|..-...+.+.+.. ...+++.+|+++-
T Consensus 279 ~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 279 AERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred HHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 11233689999998865321 1221 22355565544555554443 1134577777773
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.9 Score=45.89 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ce--------EEEecC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-RE--------VKIGIN 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~--------v~i~~~ 165 (398)
...||.|+|| |.+|...+..+...|- .|.. .|+++++++ .+.++........ .+ .+..++
T Consensus 164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA-----~V~a----~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 164 PPAKVLVIGA-GVAGLAAIGAAGSLGA-----IVRA----FDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcch
Confidence 4679999995 9999999888877664 1332 377777766 5554431100000 00 000011
Q ss_pred c---------ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHH-HHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 P---------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF-AEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~---------~eal~dADiViitag~~rk~g~~r~dll~~N~~i~-~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+ .+.++++|+||.+++.|.++- -..+ ++.. +.. .|++.|+.++-+
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~a----------P~lit~~~v---~~m-kpGgvIVdvg~~ 287 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPA----------PKLITAEMV---ASM-KPGSVIVDLAAE 287 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccC----------cchHHHHHH---Hhc-CCCCEEEEEccC
Confidence 1 122368999999999763210 1122 3333 222 588888888865
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.98 Score=44.93 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH--------HhhhcCC-CcceEEEecCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-LLREVKIGINP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D--------L~d~~~~-~~~~v~i~~~~ 166 (398)
|+||+-||| |.||....-.++..-- .|.+.++ |.+..+..+.--| |.+.... ...+.-+.+|-
T Consensus 1 ~~kicciga-gyvggptcavia~kcp-----~i~vtvv--d~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdi 72 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCP-----DIEVTVV--DISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDI 72 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCC-----ceEEEEE--ecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecch
Confidence 579999995 9999886555544321 2555454 5665554322111 0110000 11245567888
Q ss_pred ccccCCCcEEEEeCCCCCC
Q 015897 167 YELFEDAEWALLIGAKPRG 185 (398)
Q Consensus 167 ~eal~dADiViitag~~rk 185 (398)
+.+++.||+|++....|.|
T Consensus 73 ekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 73 EKAIKEADLVFISVNTPTK 91 (481)
T ss_pred HHHhhhcceEEEEecCCcc
Confidence 9999999999998776643
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.89 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++||+|.|+ |.||..+...|..++.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 469999996 9999999999887653
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.24 Score=47.73 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=44.6
Q ss_pred CEEE-EEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc-ccchhhHHHHHHHHhhhc-CCCc-ceEEEecCcccccCC
Q 015897 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSL-FPLL-REVKIGINPYELFED 172 (398)
Q Consensus 97 ~KI~-IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~-D~~~~~l~g~a~DL~d~~-~~~~-~~v~i~~~~~eal~d 172 (398)
.|++ |+||+|.||+-+...|...+.|+ |.+ ++- .++..+--+.+..-.+.. .|.. .+.++..-+.+.|..
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~----ikv--LgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e 77 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS----IKV--LGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE 77 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce----eee--ecccccccCCceEecccchhcccccchhhhhhHhhcChhhccc
Confidence 4677 99999999999999888777654 332 221 122111111111111111 0111 234444567889999
Q ss_pred CcEEEEeCC
Q 015897 173 AEWALLIGA 181 (398)
Q Consensus 173 ADiViitag 181 (398)
||||+...+
T Consensus 78 cDIvfsgld 86 (361)
T KOG4777|consen 78 CDIVFSGLD 86 (361)
T ss_pred ccEEEecCC
Confidence 999998654
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=3.6 Score=39.37 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.4
Q ss_pred CEEEEEcCCC--chHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAG--MIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G--~vG~~la~~L~~~~~ 121 (398)
+.+.|+||++ .||..++..|+..|.
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~ 33 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGA 33 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCC
Confidence 5788999864 799999999998875
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.2 Score=42.86 Aligned_cols=26 Identities=15% Similarity=-0.066 Sum_probs=22.1
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAA--GMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~--G~vG~~la~~L~~~~~ 121 (398)
.+.+.|+||+ +.||..++..|+..|.
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~ 32 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA 32 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC
Confidence 3588999985 5899999999999875
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.69 Score=47.34 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+||| .|+||+.++..+..-|. .+. .+ |...... ... .. ..+..+.+++||+
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~-----~V~--~~--Dp~~~~~-------~~~-------~~-~~~l~ell~~aDi 170 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW-----KVL--VC--DPPRQEA-------EGD-------GD-FVSLERILEECDV 170 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC-----EEE--EE--CCccccc-------ccC-------cc-ccCHHHHHhhCCE
Confidence 36999999 59999999999987664 232 34 4321110 000 01 1245677899999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
|++..
T Consensus 171 V~lh~ 175 (381)
T PRK00257 171 ISLHT 175 (381)
T ss_pred EEEeC
Confidence 98864
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.8 Score=40.01 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~ 27 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ 27 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC
Confidence 4789999999999999999998774
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=3.9 Score=37.55 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec--Ccc---cccCCCc
Q 015897 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPY---ELFEDAE 174 (398)
Q Consensus 101 IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~---eal~dAD 174 (398)
|+||+|.+|..++..|+..|. .+.+ .+++.+.++....+++... .. .....++. +-. +.+...|
T Consensus 2 ItGas~~iG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 2 VVGGSSGIGLALARAFAAEGA-----RVTI----ASRSRDRLAAAARALGGGA-PVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred eecCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 899999999999999999875 2433 3566666665555553111 00 00111110 011 1233479
Q ss_pred EEEEeCCCCCC-CC--Cc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRG-PG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk-~g--~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|..+|.... +- .+ -.+.+..|..-...+.+.. .. ...+.+|+++
T Consensus 72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~-~~~g~iv~~s 123 (230)
T PRK07041 72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RI-APGGSLTFVS 123 (230)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhh-hh-cCCeEEEEEC
Confidence 99998775321 11 11 1233455554444444422 22 2456666655
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=6.6 Score=42.78 Aligned_cols=136 Identities=11% Similarity=0.020 Sum_probs=76.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (398)
.+|.|+|. |.+|+.++..|...++ ++.+ +|.|+++.+... + .. .++..+. + ....+
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~~-~---~g----~~v~~GDat~~~~L~~agi 462 (621)
T PRK03562 401 PRVIIAGF-GRFGQIVGRLLLSSGV-----KMTV----LDHDPDHIETLR-K---FG----MKVFYGDATRMDLLESAGA 462 (621)
T ss_pred CcEEEEec-ChHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHHH-h---cC----CeEEEEeCCCHHHHHhcCC
Confidence 58999995 9999999999988775 3443 477777665332 2 11 1222222 1 22567
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCch
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL 250 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~l 250 (398)
.+||.+|++-+.+ +.|.. ++..+++. .|+..++.-++--. ..+.+ +.. +.+ .+---+.-
T Consensus 463 ~~A~~vvv~~~d~-----------~~n~~----i~~~ar~~-~p~~~iiaRa~d~~-~~~~L-~~~-Gad--~v~~e~~e 521 (621)
T PRK03562 463 AKAEVLINAIDDP-----------QTSLQ----LVELVKEH-FPHLQIIARARDVD-HYIRL-RQA-GVE--KPERETFE 521 (621)
T ss_pred CcCCEEEEEeCCH-----------HHHHH----HHHHHHHh-CCCCeEEEEECCHH-HHHHH-HHC-CCC--EEehhhHh
Confidence 7999998875432 33433 44445555 58877665443321 22222 333 332 22222222
Q ss_pred hHHHHHHHHHHHcCcCcCcee
Q 015897 251 DENRAKCQLALKAGVFYDKVS 271 (398)
Q Consensus 251 Ds~Rl~~~lA~~lgv~~~~V~ 271 (398)
.+.++-..+-+.+|+++++++
T Consensus 522 ~sl~l~~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 522 GALKSGRLVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 345677777777887776654
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.1 Score=42.14 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc---hhhHHHHHHHHhhhcCCCcceEEEec-Cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIGI-NP----Y 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~---~~~l~g~a~DL~d~~~~~~~~v~i~~-~~----~ 167 (398)
.+++.|+|| |..+.++++.|+..+.. .|.+ + +++ .++++..+.++.+.. . ..+.+.. ++ .
T Consensus 124 ~k~vlvlGa-GGaarAi~~~l~~~g~~----~i~i--~--nRt~~~~~ka~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 124 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKL--F--NRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 191 (288)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE--E--eCCccHHHHHHHHHHHhhhcc-C--ceEEEechhhhhhhh
Confidence 358999995 88899999999887762 2544 3 566 346776766654321 1 1122221 11 2
Q ss_pred cccCCCcEEEEeC
Q 015897 168 ELFEDAEWALLIG 180 (398)
Q Consensus 168 eal~dADiViita 180 (398)
+++.++|+||.+-
T Consensus 192 ~~~~~aDivINaT 204 (288)
T PRK12749 192 EALASADILTNGT 204 (288)
T ss_pred hhcccCCEEEECC
Confidence 3567899999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 398 | ||||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 1e-167 | ||
| 7mdh_A | 375 | Structural Basis For Light Acitvation Of A Chloropl | 1e-165 | ||
| 1wze_A | 327 | Structural Basis For Alteration Of Cofactor Specifi | 5e-81 | ||
| 1iz9_A | 327 | Crystal Structure Of Malate Dehydrogenase From Ther | 3e-77 | ||
| 1bmd_A | 327 | Determinants Of Protein Thermostability Observed In | 3e-77 | ||
| 1bdm_A | 327 | The Structure At 1.8 Angstroms Resolution Of A Sing | 2e-76 | ||
| 1b8p_A | 329 | Malate Dehydrogenase From Aquaspirillum Arcticum Le | 2e-69 | ||
| 4mdh_A | 334 | Refined Crystal Structure Of Cytoplasmic Malate Deh | 6e-69 | ||
| 5mdh_A | 333 | Crystal Structure Of Ternary Complex Of Porcine Cyt | 6e-69 | ||
| 3d5t_A | 331 | Crystal Structure Of Malate Dehydrogenase From Burk | 6e-66 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 6e-64 | ||
| 3fi9_A | 343 | Crystal Structure Of Malate Dehydrogenase From Porp | 2e-15 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 5e-12 | ||
| 1a5z_A | 319 | Lactate Dehydrogenase From Thermotoga Maritima (tml | 1e-10 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 2e-08 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 3e-08 | ||
| 2d4a_A | 308 | Structure Of The Malate Dehydrogenase From Aeropyru | 1e-07 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 2e-07 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 9e-07 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 2e-06 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 3e-06 | ||
| 1y6j_A | 318 | L-Lactate Dehydrogenase From Clostridium Thermocell | 7e-06 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 1e-05 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 2e-05 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 5e-05 | ||
| 1sov_A | 328 | Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap | 6e-05 | ||
| 3czm_A | 326 | T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex | 6e-05 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 1e-04 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 6e-04 | ||
| 1pzg_A | 331 | T.Gondii Ldh1 Complexed With Apad And Sulfate At 1. | 8e-04 |
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
| >pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 | Back alignment and structure |
|
| >pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 | Back alignment and structure |
|
| >pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 | Back alignment and structure |
|
| >pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 | Back alignment and structure |
|
| >pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328 | Back alignment and structure |
|
| >pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 449 bits (1156), Expect = e-158
Identities = 272/317 (85%), Positives = 295/317 (93%)
Query: 66 DPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPD 125
+ + DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G D
Sbjct: 2 EAPATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQD 61
Query: 126 QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRG 185
QPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRG
Sbjct: 62 QPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 121
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
PGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFH
Sbjct: 122 PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFH 181
Query: 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK 305
ALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK K
Sbjct: 182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK 241
Query: 306 WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
WLEE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNP
Sbjct: 242 WLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 301
Query: 366 YGIAEDIVFSMPCRSKK 382
YGIAEDIVFSMPCRSK
Sbjct: 302 YGIAEDIVFSMPCRSKG 318
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 403 bits (1038), Expect = e-141
Identities = 148/289 (51%), Positives = 198/289 (68%), Gaps = 2/289 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAKD 288
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 402 bits (1034), Expect = e-140
Identities = 139/291 (47%), Positives = 193/291 (66%), Gaps = 4/291 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ KRG +I G SSA
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSA 242
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
AS A + +D + V T G W + G+ ++G YGI E ++F P ++
Sbjct: 243 ASAANAAIDHIHDWVLGTA-GKWTTMGIPSDG-SYGIPEGVIFGFPVTTEN 291
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 395 bits (1016), Expect = e-137
Identities = 135/290 (46%), Positives = 181/290 (62%), Gaps = 4/290 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ IW
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 277 GNHSTTQVPDFLNARINGLP----VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
GNHS+TQ PD +A++ V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAM 243
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKK 382
S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K
Sbjct: 244 SAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKD 293
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 7e-87
Identities = 75/288 (26%), Positives = 122/288 (42%), Gaps = 17/288 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ A L P+ L L + LEGVA E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMR-LTPN----LCLY--DPFAVGLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + + L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG---FTETIQKRGGLLIKKWGRSSA 331
+G H A++NG P+ ++I K E + + K G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 379
S + ++ +++ + + +G Y N G E I+ +M
Sbjct: 238 QSPSYVSIEMIRAAMGGEAF--RWPAGCYVNV--PGF-EHIMMAMETT 280
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-14
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 27/250 (10%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
G A++L + + K+ G N Y+ E+++ ++ PR PGM R LL IN ++
Sbjct: 43 NGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVM 102
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQL 259
G+ + N VI + NP + + K + +P N LD R + L
Sbjct: 103 QTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKFS-GVP-DNKIVGMAGVLDSARFRTFL 159
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ--- 316
A + V +V + G H T VP + + G+ +++++K+ K +E +
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTR 218
Query: 317 KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 368
GG ++ SA A+ + + ++ K ++ YG+
Sbjct: 219 SGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILP---------CAAKVKAGMYGL 269
Query: 369 AEDIVFSMPC 378
ED+ +P
Sbjct: 270 DEDLFVGVPT 279
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++ +V++ G N Y +++ +++ GA PR PGM R L+ +N
Sbjct: 40 QGKALDLYEASPIEGFDVRVTGTNNYADTANSD--VIVVTSGA-PRKPGMSREDLIKVNA 96
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
I ++ N +I+V NP + + + + P K LD R +
Sbjct: 97 DITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVS-GFP-KERVIGQAGVLDAARYR 153
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A++AGV + V M + G H VP + I+G+PV E I + L + T +
Sbjct: 154 TFIAMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISGIPVSEFIAPDR-LAQIVERT-R 210
Query: 317 KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 368
K GG ++ SA A+ +V+A+ K ++ Y G YG+
Sbjct: 211 KGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMP---------VAAYLTGQ-YGL 260
Query: 369 AEDIVFSMPC 378
DI F +P
Sbjct: 261 -NDIYFGVPV 269
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 39/270 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A K L E L +G A+++ +S L + K+ G N Y +++ ++I
Sbjct: 19 LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSD--IVIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N I E + + N +IVV NP + + +
Sbjct: 77 AGL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRS-G 133
Query: 239 IPAKN--FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP 296
+P K LD R + +A++ GV ++ + G H VP + G+P
Sbjct: 134 LP-KERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL-GGHGDAMVPVVKYTTVAGIP 191
Query: 297 VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTP 348
+ +++ +++ T + G +++ + SA AS+ V +V+++ K ++
Sbjct: 192 ISDLLPAET-IDKLVERT-RNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLP- 248
Query: 349 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
V G YGI + +P
Sbjct: 249 --------CAVGLEGQ-YGI-DKTFVGVPV 268
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + + KI G N YE ++++ ++I G PR P M R+ LL +N
Sbjct: 52 QGKALDLNHCMALIGSPAKIFGENNYEYLQNSD--VVIITAGV-PRKPNMTRSDLLTVNA 108
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + + + IP N LD R +
Sbjct: 109 KIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKS-GIP-ANKVCGMSGVLDSARFR 165
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
C L+ GV VS + + G H +P + I G+ + + ++ K E I+
Sbjct: 166 CNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIK 224
Query: 317 K-R--GGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
K GG +++ SA A++AV++ A KS++ Y G
Sbjct: 225 KTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLV---------CSTYLTGQ- 274
Query: 366 YGIAEDIVFSMPC 378
Y + ++ +P
Sbjct: 275 YNV-NNLFVGVPV 286
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 64/295 (21%), Positives = 119/295 (40%), Gaps = 39/295 (13%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GA+G + A L + +++ L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKDLV---------LIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ I + ++++ ++ PR GM R L N +I + K
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAK--KIA 111
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 112 EICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSS 330
I G H + VP I G+P+++ + ++E + + +G +I+ G S
Sbjct: 172 TRII-GEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDV-KTKGEQIIRLKG-GS 228
Query: 331 A---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
A+ +++V + K L+T Y +G GI D+ +P
Sbjct: 229 EFGPAAAILNVVRCIVNNEKRLLT---------LSAYVDGEFDGI-RDVCIGVPV 273
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 32/249 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ ++ + I G + Y D++ +++ G R PGM R L+ N
Sbjct: 48 KGKALDMLEASPVQGFDANIIGTSDYADTADSD--VVVITAGI-ARKPGMSRDDLVATNS 104
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
+I + + + N ++V+ NP + K A P + LD R +
Sbjct: 105 KIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVLDTARFRT 162
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A + + ++ + G H VP + G+P++ +I + LE T +K
Sbjct: 163 FIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGGIPLETLIPKER-LEAIVERT-RK 219
Query: 318 RGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIA 369
GG ++ G SA A++ V + +A+ + ++ + Y G YG
Sbjct: 220 GGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLP---------AIAYLEGE-YGY- 268
Query: 370 EDIVFSMPC 378
D+ +P
Sbjct: 269 SDLYLGVPV 277
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 29/247 (11%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + L +++I G N YE ++ +++ G R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSD--IVLVTAGI-GRKPGMTREQLLEANA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
A+ + + A A + V++ NP + + K + LD R
Sbjct: 94 NTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYY 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
++ K GV + V+ + + G H P + + G+P++ ++ + +EE +ET
Sbjct: 153 ISQKLGVSFKSVNAIVL-GMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSET-VNA 209
Query: 319 GGLLIKKWGRSSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAED 371
G + + G SS A+ V V+A+ K + +Y G YG D
Sbjct: 210 GAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYP---------YSLYLQGE-YGY-ND 258
Query: 372 IVFSMPC 378
IV +P
Sbjct: 259 IVAEVPA 265
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 36/268 (13%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A + + E + +G A+++ +S + ++ G N Y ED++ + I
Sbjct: 19 VARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSD--VCIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N +I + + + +IVV NP + + + +
Sbjct: 77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEAS-G 133
Query: 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
P + LD R + +A + V V + + G H T VP + G+PV
Sbjct: 134 FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM-GGHGDTMVPLPRYTTVGGIPV 192
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTP 350
++I D + +EE T + GG ++ G S+ + A + +A+ K ++
Sbjct: 193 PQLIDDAR-IEEIVERT-KGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILP--- 247
Query: 351 EGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
Y +G YG+ +D+ +P
Sbjct: 248 ------CAAYCDGE-YGL-DDLFIGVPV 267
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G +++ +S + K G N Y E A+ ++I G PR PGM R LL IN
Sbjct: 45 QGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD--VVIVTAGV-PRKPGMSRDDLLGINL 101
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ + G + A VI + NP + K + +P + LD R +
Sbjct: 102 KVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKFS-GLP-AHKVVGMAGVLDSARFR 158
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ + V + V+ + G H + VP + + G+P+ +++K ++ + IQ
Sbjct: 159 YFLSEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQ 217
Query: 317 ---KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
G ++ SA A++A+ + ++ K ++ +G
Sbjct: 218 RTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLP---------VAAQLSGQ- 267
Query: 366 YGIAEDIVFSMPC 378
YG+ +D+ +P
Sbjct: 268 YGV-KDMYVGVPT 279
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 9e-12
Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ S+ K+ G + Y ++ ++I P P +R+ LL N
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSD--VVIITASI-PGRPKDDRSELLFGNA 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + K + +P N LD +R +
Sbjct: 99 RILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS-GLP-HNKVCGMAGVLDSSRFR 155
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A GV VS I G H VP + + G+P+ IK +E E +
Sbjct: 156 TFIAQHFGVNASDVSANVI-GGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVC 214
Query: 317 K-R--GGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
R + +A A+ AV + +A K++V + + +
Sbjct: 215 HTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVP---------CSAFCSNH- 264
Query: 366 YGIAEDIVFSMPC 378
YG+ + I +P
Sbjct: 265 YGV-KGIYMGVPT 276
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 32/251 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++L P KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 47 TKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD--LVVITAGA-PQKPGETRLDLVNKNL 102
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+I + N +V NP + K + + + T LD R +
Sbjct: 103 KILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS 161
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
+A V V + G H T+ P + +A I G+ + E +K H ++E + +
Sbjct: 162 IAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFED 220
Query: 319 ----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 367
+IK G + A+ I A+ ++ V P VY +G YG
Sbjct: 221 VRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPL--------SVYMDGQ-YG 269
Query: 368 IAEDIVFSMPC 378
+ DI P
Sbjct: 270 L-NDIYIGTPA 279
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
EG A++L P R I Y + ++ ++I G P+ PG R LL N
Sbjct: 38 AEGDALDLIHGT-PFTRRANIYAGDYADLKGSD--VVIVAAGV-PQKPGETRLQLLGRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
++ E + ++ + + VIVV NP + LK + P K F + T LD R +
Sbjct: 94 RVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKESGMD--PRKVFGSGTVLDTARLR 150
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A G V I G H ++VP + A I G+P++ + + + + E
Sbjct: 151 TLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFA 209
Query: 317 KR----GGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
++ +I++ G + A + A IV+++ K ++T VY
Sbjct: 210 EKTKRAAYEIIERKGATHYAIALAVA-DIVESIFFDEKRVLT---------LSVYLEDY- 258
Query: 366 YGIAEDIVFSMPC 378
G+ +D+ S+P
Sbjct: 259 LGV-KDLCISVPV 270
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 37/255 (14%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
L+G M+L+ L + Y + +++ L+I GA + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSK--LVIITAGA-RQQEGESRLNLVQRNV 113
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKN--FHALTRLDENR 254
IF + S K+++V NP + + K + P KN + LD R
Sbjct: 114 NIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFP----KNRVIGSGCNLDSAR 168
Query: 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LE 308
+ + + GV + G H + VP + + G+ +K + +
Sbjct: 169 FRYLMGERLGVHPLSCHGWVL-GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWK 227
Query: 309 EGFTETIQKRGGLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNG 363
+ + + +IK G +S A + + +++ V P G
Sbjct: 228 DVHKQVVDS-AYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPI--------STMIKG 278
Query: 364 NPYGIAEDIVFSMPC 378
YGI ED+ S+PC
Sbjct: 279 L-YGIKEDVFLSVPC 292
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 42/312 (13%)
Query: 80 LTYDLKAEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSE 136
L L +E +S+ K I V A GM A +L K A E +AL + +
Sbjct: 8 LIGHLATSQEPRSYNK---ITVVGCDAVGMADAISVLMKDLADE-------VALVDVMED 57
Query: 137 RSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195
+ L+G M+LE L KI Y + ++ ++ + G R L+
Sbjct: 58 K----LKGEMMDLEHGS-LFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQ 112
Query: 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + S + + K + + + LD R
Sbjct: 113 RNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARF 171
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE-GFTET 314
+ + + GV V I G H + + L + ++ ++ G+T
Sbjct: 172 RYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTS- 229
Query: 315 IQKRGGLLIKKWGRSSA-----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPY 366
GL++ + + + V P Y
Sbjct: 230 --WAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPV--------STMVKDF-Y 278
Query: 367 GIAEDIVFSMPC 378
GI +++ S+PC
Sbjct: 279 GIKDNVFLSLPC 290
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 4e-11
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 24/213 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P+ ++ + DA+ ++I GA + PG R LL+ N
Sbjct: 38 AQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQ--VVILTAGA-NQKPGESRLDLLEKNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
IF E + + + ++V NP + + + AP + T LD R +
Sbjct: 94 DIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP----GQPVIGSGTVLDSARFR 148
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK------DHKWLEEG 310
+A AGV + G H ++V + +A + G+PV + ++ + + +
Sbjct: 149 HLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKI 207
Query: 311 FTETIQKRGGLLIKKWGRSS--AASTAVSIVDA 341
T +I+ + + I +A
Sbjct: 208 DEGTRNA-AASIIEGKRATYYGIGAALARITEA 239
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 7e-11
Identities = 51/271 (18%), Positives = 96/271 (35%), Gaps = 38/271 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI--- 179
+AL + E L + + A ++ + P V + Y E A ++
Sbjct: 19 LALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGAR--AVVLAA 75
Query: 180 GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239
G + PG R LLD N Q+FA+ + + ++V NP + + +
Sbjct: 76 GV-AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLP 133
Query: 240 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
P + + T LD R + LA V V + G H ++V + +A++ G+P+ E
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQVGGVPLLE 192
Query: 300 IIKDHKW------LEEGFTETIQKRGGLLIKKWGRSS---AASTAVSIVDAM---KSLVT 347
+ + +I+ G + A A +V A+ + V
Sbjct: 193 FAEARGRALSPEDRARIDEGVRRA-AYRIIEGKGATYYGIGAGLA-RLVRAILTDEKGVY 250
Query: 348 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
+T G+ ++ S+P
Sbjct: 251 TV--------SAFTPE-VAGV-LEVSLSLPR 271
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 8e-11
Identities = 60/261 (22%), Positives = 90/261 (34%), Gaps = 36/261 (13%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+AV GA+G I L L L S +L GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLK------------NSPLVSRLTLYDIAHTPGVAADLSHIETR 50
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + + + ++ PR PGM R L + N I A A A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCP 109
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ + ++ NP N+ K +T LD RA +A G+ +VS
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVS 169
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK-KWGRSS 330
I G+ T +P ++ + T IQ+ G ++K K G S
Sbjct: 170 VPVIGGHAGKTIIPLISQCTPKVDFPQDQL-------STLTGRIQEAGTEVVKAKAGAGS 222
Query: 331 A--------ASTAVSIVDAMK 343
A A S+VDAM
Sbjct: 223 ATLSMAYAGARFVFSLVDAMN 243
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 35/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G M+L + VK YE +DA+ ++ GA + PG R L++ N
Sbjct: 43 AMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDAD--IVCICAGA-NQKPGETRLELVEKNL 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
+IF + A + +V NP + K + P + + T LD R +
Sbjct: 100 KIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLP--KERVIGSGTTLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ G V I G H T++P + +A + G+PV E+++ + ++ + I
Sbjct: 157 FMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIV 215
Query: 317 KR----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNP 365
+I+K G + A + I A+ ++ + Y +G
Sbjct: 216 DDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTV--------STYLDGQ- 264
Query: 366 YGIAEDIVFSMPC 378
YG +D+ +P
Sbjct: 265 YGA-DDVYIGVPA 276
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 41/259 (15%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI----GAKPRGPGMERAG----- 192
EG A++L + V + YE A + G + PG +
Sbjct: 47 EGKALDLSHVTSVVDTNVSVRAEYSYE--AALTGADCVIVTAGL-TKVPGKPDSEWSRND 103
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRL 250
LL N +I E G+ + +IVV NP + + + + +P N L
Sbjct: 104 LLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEAS-GVP-TNMICGMACML 160
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
D R + +A V V I G H VP +NG P+++ IKD E+
Sbjct: 161 DSGRFRRYVADALSVSPRDVQATVI-GTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 219
Query: 311 FTETIQ---KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGV 359
E + GG +++ G+ SA A++AV++ + K ++ V
Sbjct: 220 LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIP---------CSV 270
Query: 360 YTNGNPYGIAEDIVFSMPC 378
Y NG YG+ +D+ +P
Sbjct: 271 YCNGE-YGL-KDMFIGLPA 287
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 36/261 (13%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+A+ GAAG I L + + L S L GV ++
Sbjct: 11 VAILGAAGGIGQPLAMLMK------------MNPLVSVLHLYDVVNAPGVTADISHMDTG 58
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + ++ PR PGM R L IN I + + A
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCP 117
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
V ++ NP N+ A K A + K +T LD RA +A G+ V
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK-KWGRSS 330
+ G+ T +P ++ + + T+ IQ G +++ K G S
Sbjct: 178 VPVVGGHAGVTILP-----LLSQVKPPSSFTQEEI--SYLTDRIQNGGTEVVEAKAGAGS 230
Query: 331 A--------ASTAVSIVDAMK 343
A A + + ++
Sbjct: 231 ATLSMAYAAVKFADACLRGLR 251
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 31/251 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM+ + V I Y+ DA L++ GA + PG R L+D N
Sbjct: 44 AIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA--DLVVICAGA-NQKPGETRLDLVDKNI 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF +++ A +V NP + K + + + T LD R +
Sbjct: 101 AIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
L V V I G H T++P + A I +P++++++ + E I
Sbjct: 160 LGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 319 ----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 367
+I+K G + A + A+ ++ + Y +G YG
Sbjct: 219 VRDAAYQIIEKKG--ATYYGIAMGLARVTRAILHNENAILTV--------SAYLDGL-YG 267
Query: 368 IAEDIVFSMPC 378
D+ +P
Sbjct: 268 E-RDVYIGVPA 277
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 52/256 (20%), Positives = 89/256 (34%), Gaps = 38/256 (14%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGM-----ERAGL 193
G A++ + K+ G N Y+ A+ ++I G + PG R L
Sbjct: 42 HGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD--VVIVTAGF-TKAPGKSDKEWNRDDL 98
Query: 194 LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLD 251
L +N +I E G + N +IVV NP + + +++ +P KN LD
Sbjct: 99 LPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS-GVP-KNKIIGLGGVLD 155
Query: 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGF 311
+R K ++ K V V+ + G H V + G+P++E I + +
Sbjct: 156 TSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDAEL 214
Query: 312 TETIQ--KRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTN 362
L I S A+ + + ++ K ++
Sbjct: 215 EAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLI---------CSTLLE 265
Query: 363 GNPYGIAEDIVFSMPC 378
G YG DI P
Sbjct: 266 GQ-YGH-SDIFGGTPV 279
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 4e-10
Identities = 54/297 (18%), Positives = 101/297 (34%), Gaps = 51/297 (17%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
++V GAAG + ++ + A EV+ D P G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDT---------VGQAADTNHGI- 52
Query: 155 PLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
++ YE ++ +++ G PR PG R L N I + +L+
Sbjct: 53 AYDSNTRVRQGGYEDTAGSD--VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEH 109
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQLALKAGVFYDK 269
+ + + NP + + A + RLD R + L+ +
Sbjct: 110 -NDDYISLTTSNPVDLLNRHLYE-AGDRS-REQVIGFGGRLDSARFRYVLSEEFDAPVQN 166
Query: 270 VSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329
V + G H QVP F ++G + E+ + Q+ +I++ G
Sbjct: 167 VEGTIL-GEHGDAQVPVFSKVSVDGTDPEF---SGDEKEQLLGDL-QESAMDVIERKG-- 219
Query: 330 SA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
+ A +V+A+ ++ + V G +G ED F +P
Sbjct: 220 ATEWGPARGVAHMVEAILHDTGEVLP---------ASVKLEGE-FGH-EDTAFGVPV 265
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 4e-10
Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ G M+L+ + V++ Y DA L++ GA + PG R L+ N
Sbjct: 44 VRGDVMDLKHATPYSPTTVRVKAGEYSDCHDA--DLVVICAGA-AQKPGETRLDLVSKNL 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+IF + A + +V NP + A K + + + T LD R +
Sbjct: 101 KIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ-- 316
L+ V V I G H T++P + +A I G P+K +++ + +
Sbjct: 160 LSEAFDVAPRSVDAQII-GEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT 218
Query: 317 -KRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 368
+I+ G + A I +A+ + V G Y
Sbjct: 219 RDAAYDIIQAKG--ATYYGVAMGLARITEAIFRNEDAVLTV--------SALLEGE-YEE 267
Query: 369 AEDIVFSMPC 378
ED+ +P
Sbjct: 268 -EDVYIGVPA 276
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 6e-10
Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 48/266 (18%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSL----QALEGVAM 147
+ +AV GAAG I G Q +AL L GSE SL GVA+
Sbjct: 1 MKVAVLGAAGGI--------------G--QALALLLKTQLPSGSELSLYDIAPVTPGVAV 44
Query: 148 ELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
+L S P ++K G + E A+ L+ R PGM+R+ L ++N I
Sbjct: 45 DL--SHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102
Query: 206 KALNAVASRNVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + A + ++ NP NT A LK A +T LD R+ +A
Sbjct: 103 QQV-AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAEL 161
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV-KEIIKDHKWLEEGFTETIQKRGGL 321
G +V I G+ T +P L +++ G+ ++ + D T+ IQ G
Sbjct: 162 KGKQPGEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVAD-------LTKRIQNAGTE 212
Query: 322 LIK-KWGRSSA----ASTAVSIVDAM 342
+++ K G SA A ++
Sbjct: 213 VVEAKAGGGSATLSMGQAAARFGLSL 238
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 31/250 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++LED+ KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 43 TKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD--LVVITAGA-PQKPGESRLDLVNKNL 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I + K + + +V NP + K + + + T LD +R +
Sbjct: 99 NILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVA 157
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ-- 316
L + V V + G H ++ + A I PV+++ K+ ++ +
Sbjct: 158 LGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGV 216
Query: 317 -KRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 368
+ +I G + + + I A+ ++ V P G Y +G YG+
Sbjct: 217 RNKAYDIINLKG--ATFYGIGTALMRISKAILRDENAVLPV--------GAYMDG-QYGL 265
Query: 369 AEDIVFSMPC 378
DI P
Sbjct: 266 -NDIYIGTPA 274
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 35/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM++ L P + ++ + Y +D + +++ GA R PG R L N
Sbjct: 45 AIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCD--VIVVTAGA-NRKPGETRLDLAKKNV 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I E + + + ++VV NP + + K + K + T LD R +
Sbjct: 101 MIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LEEGFT 312
L+ K GV V I G H +Q+P + I G + E I D K ++
Sbjct: 160 LSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAE 218
Query: 313 ETIQKRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
+ G +IK G + A S +IV+ + ++ T G NG
Sbjct: 219 DVKTA-GATIIKNKGATYYGIAVSIN-TIVETLLKNQNTIRT---------VGTVINGM- 266
Query: 366 YGIAEDIVFSMPC 378
YGI ED+ S+P
Sbjct: 267 YGI-EDVAISLPS 278
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 45/301 (14%), Positives = 84/301 (27%), Gaps = 52/301 (17%)
Query: 86 AEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142
A E K+ K I V G G+ + K A ++ D +
Sbjct: 7 ANHENKTVNK---ITVVGGGELGIACTLAISAKGIADRLVLLDLS------------EGT 51
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G M+LE P ++ ++ G ++ N +F
Sbjct: 52 KGATMDLEIFNLP----NVEISKDLSASAHSK-VVIFTVNSLGSSQSYLDVVQSNVDMFR 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
AL S++ ++V P + K + + LD R + +
Sbjct: 107 ALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNV 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322
I G +V + + + R L
Sbjct: 166 LKAQTSGKEVWVI-GEQGEDKVLTWSGQ--EEVVSHTSQVQ-----------LSNRAMEL 211
Query: 323 IKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP 377
++ G+ S + + +VD++ K V G Y I ++ S+P
Sbjct: 212 LRVKGQRSWSVGLSVADMVDSIVNNKKKVHSV--------SALAKGY-YDINSEVFLSLP 262
Query: 378 C 378
C
Sbjct: 263 C 263
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-09
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 33/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
+E ++++ V I G + E+ DA+ +++ G + PG R L+
Sbjct: 45 VEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD--MVVITAGP-RQKPGQSRLELVGAT 100
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257
I L V + N +++ NP + + K + F + T LD R +
Sbjct: 101 VNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRF 159
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFTETI 315
+A + GV V G H ++VP + +A I G+P+ + H L+ E I
Sbjct: 160 LIAQQTGVNVKNVHAYIA-GEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEI 218
Query: 316 QKR----GGLLIKKWGRSS--AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
+ +I G ++ + V I++A+ ++
Sbjct: 219 HQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILP---------VSSMLKDF- 268
Query: 366 YGIAEDIVFSMPC 378
+GI DI S+P
Sbjct: 269 HGI-SDICMSVPT 280
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 12/208 (5%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEW----ALLIGAKPRGPGMERAGLLDIN 197
++ ++ +D++ L I IN + DA+ I + P +R L
Sbjct: 39 VKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFT 98
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRA 255
+ G L + ++V+ NP + + P K T LD R
Sbjct: 99 SSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVTGFP--AHKVIGTGTLLDTARM 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + VS + G H +Q + R+ G P+ + E
Sbjct: 156 QRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEA 214
Query: 316 QKRGGLLIKKWGRSSA--ASTAVSIVDA 341
+K G ++ G +S A++A+ I A
Sbjct: 215 RKGGFTVLNGKGYTSYGVATSAIRIAKA 242
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 42/249 (16%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
G AM+L + + + KI G Y L + +E +++ G R PGM R L N
Sbjct: 38 AVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSE--IIVVTAGL-ARKPGMTRLDLAHKN 94
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRA 255
I + K + + K++VV NP + I K P +N F +LD R
Sbjct: 95 AGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWK-ESGKP-RNEVFGMGNQLDSQRL 151
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
K +L + I G H + A +G E + +
Sbjct: 152 KERLYNAGAR---NIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAV---------ENDVR 199
Query: 316 QKRGGLLIKKWGR------SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
+IK+ G + ++V+ ++ + + G YGI
Sbjct: 200 FV-AAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIP---------TSMILQGE-YGI- 247
Query: 370 EDIVFSMPC 378
E++ +P
Sbjct: 248 ENVAVGVPA 256
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 7e-04
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 50/202 (24%)
Query: 1 MAVVAQLSPSS------YTETTRLSSSQLSLSST--HLSSLRRRAFRPIIGPRNPTISCS 52
M VV +L S T + S L L + +L R
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--------------- 449
Query: 53 VNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSW--------------KKMVN 98
V+ P + DD D Y + + LK E + +K+ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 99 IAVS-GAAGMIANHLL-FKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-- 154
+ + A+G I N L K + + P ER + A+ ++E++L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC-DNDPK------YERLVNAILDFLPKIEENLICS 562
Query: 155 PLLREVKIGI-NPYE-LFEDAE 174
++I + E +FE+A
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAH 584
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 100.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 100.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 100.0 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 100.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 100.0 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.49 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.33 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.25 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.23 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.17 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.17 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.17 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.15 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.1 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.06 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.05 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.01 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.95 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.94 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 97.92 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.87 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.86 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.8 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.8 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.79 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.78 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.78 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.78 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.77 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.75 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.75 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.75 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.72 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.72 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.7 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.67 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.66 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.66 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.65 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.62 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.58 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.58 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.58 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.58 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.57 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.57 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.56 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.55 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.53 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 97.53 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.52 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.51 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.5 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.5 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.48 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.48 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.46 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.45 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.45 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.44 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.42 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.42 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.4 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 97.4 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.39 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 97.39 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.38 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.36 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.36 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.35 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 97.33 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.32 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.32 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.32 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.3 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.3 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.29 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.29 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.29 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.28 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 97.27 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.27 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.26 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.25 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.24 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 97.23 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 97.22 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.21 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 97.2 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 97.19 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.19 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 97.17 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 97.16 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.16 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 97.15 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.13 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 97.12 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 97.11 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 97.11 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 97.1 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.09 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 97.05 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.05 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.02 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 97.01 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 97.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.99 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.98 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.97 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.94 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.94 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 96.93 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 96.92 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.9 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.9 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.9 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.89 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.89 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 96.88 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.87 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 96.87 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.87 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.86 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.86 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 96.85 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 96.83 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.82 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.81 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.81 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.8 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 96.8 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.8 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 96.8 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.79 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 96.79 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.79 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.79 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.79 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 96.79 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.78 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.76 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.76 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.76 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.76 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.75 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 96.75 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.75 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 96.75 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.75 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.74 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.74 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 96.74 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.74 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.73 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.73 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 96.72 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.71 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.71 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.7 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.7 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.7 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 96.69 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.69 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.69 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.69 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.68 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 96.68 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.68 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.68 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.68 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 96.67 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.67 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.66 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.66 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 96.66 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.65 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.65 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.65 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.64 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.64 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.64 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 96.64 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 96.63 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 96.63 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.62 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 96.62 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 96.62 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 96.61 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 96.61 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.6 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 96.6 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 96.6 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 96.59 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.59 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.57 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.56 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 96.56 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 96.55 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 96.55 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 96.54 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 96.54 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 96.53 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 96.53 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 96.52 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 96.52 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 96.52 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 96.52 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.51 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 96.51 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.51 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 96.5 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.5 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 96.49 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 96.49 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.49 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 96.48 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 96.48 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 96.47 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 96.47 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 96.45 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.45 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 96.44 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 96.44 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 96.44 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 96.44 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 96.43 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 96.43 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 96.42 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.42 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.42 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 96.41 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 96.41 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 96.4 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 96.4 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 96.4 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.39 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 96.38 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.38 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 96.38 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.37 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 96.37 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.37 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 96.37 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 96.36 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.36 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.35 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.35 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.35 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 96.34 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.31 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 96.3 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 96.29 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 96.28 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 96.28 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.28 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 96.27 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 96.27 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 96.27 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 96.26 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 96.26 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 96.26 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.26 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 96.25 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.25 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 96.24 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 96.22 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 96.22 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 96.21 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.21 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 96.21 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 96.21 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 96.2 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.2 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.2 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 96.18 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 96.18 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 96.17 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 96.16 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 96.16 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 96.16 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 96.15 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 96.15 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.15 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 96.15 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.14 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 96.14 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.13 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 96.13 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 96.11 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 96.11 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.11 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.11 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 96.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.09 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.08 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 96.08 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 96.08 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.08 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 96.07 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 96.07 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 96.07 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 96.06 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.05 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 96.05 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.04 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 96.04 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 96.03 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 96.03 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.02 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 96.0 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.99 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 95.99 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 95.99 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.99 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 95.97 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.97 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.96 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.95 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 95.95 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.94 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.93 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 95.93 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 95.93 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 95.91 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 95.9 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.89 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 95.88 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 95.85 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 95.85 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.83 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 95.81 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.76 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 95.76 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 95.75 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 95.74 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.74 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 95.74 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 95.74 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 95.74 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 95.72 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.72 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 95.71 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.68 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 95.65 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 95.63 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.6 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.57 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 95.57 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 95.55 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 95.54 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.52 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 95.51 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.5 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.5 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 95.49 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 95.48 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 95.47 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.45 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 95.46 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 95.46 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 95.44 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.41 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 95.41 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 95.4 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 95.39 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.38 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.37 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 95.35 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 95.32 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.28 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 95.26 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 95.25 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 95.23 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 95.19 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.19 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.16 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.14 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.14 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 95.13 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 95.13 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.12 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 95.11 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 95.1 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 95.09 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 95.07 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.07 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.04 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 95.04 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 95.03 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 95.03 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 95.03 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 95.0 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.0 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 94.97 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 94.97 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 94.96 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 94.89 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 94.85 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.81 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 94.79 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 94.79 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.78 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 94.76 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.74 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 94.74 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 94.72 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 94.71 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 94.69 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.68 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.62 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 94.57 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.54 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.46 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.44 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 94.43 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 94.43 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 94.4 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 94.36 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.3 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.26 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.24 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.22 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.21 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 94.16 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 94.12 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.06 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 94.04 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 93.94 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 93.9 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 93.9 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 93.83 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 93.79 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 93.73 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 93.67 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 93.67 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 93.66 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 93.66 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 93.63 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 93.62 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 93.6 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 93.57 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 93.55 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 93.53 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 93.51 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 93.5 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 93.5 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.47 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 93.42 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 93.39 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 93.39 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 93.37 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 93.31 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.26 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 93.17 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 93.15 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 93.12 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 93.07 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 92.98 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 92.93 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-81 Score=625.34 Aligned_cols=329 Identities=83% Similarity=1.303 Sum_probs=297.1
Q ss_pred CCCCCCCcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHH
Q 015897 67 PKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146 (398)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a 146 (398)
++.+..+||||||++||+++|.+.++|++++||+|+||+|+||+++++.|+.+++++++++|.|+++|+|.++++++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~a 82 (375)
T 7mdh_A 3 APATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 82 (375)
T ss_dssp ------CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH
T ss_pred CccccccceeEEEEEeechhhhhHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHH
Confidence 34456899999999999999999999999999999998899999999999999999988889999999999999999999
Q ss_pred HHHhhhcCCCcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 147 ~DL~d~~~~~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|||+|+.++++.++.+++++|++++|||+||+++|.||+|||+|+|++.+|++|++++++.|.++++|++++|++|||+|
T Consensus 83 mDL~h~~~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD 162 (375)
T 7mdh_A 83 MELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 162 (375)
T ss_dssp HHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred HhHHhhhhhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 99999987787788889999999999999999999999999999999999999999999999998679999999999999
Q ss_pred hHHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccc
Q 015897 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306 (398)
Q Consensus 227 ~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~ 306 (398)
++|++++|+++++|+|+||+||.||++|++++||+++|++|++|++++||||||++|||+||+++|+|+|+.+++.+++|
T Consensus 163 ~~t~ia~k~sg~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~~~~~ 242 (375)
T 7mdh_A 163 TNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKW 242 (375)
T ss_dssp HHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHH
T ss_pred HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhccchhh
Confidence 99999999998888899999999999999999999999999999987999999999999999999999999999887778
Q ss_pred cHHHHHHHHHhhhHHHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCce
Q 015897 307 LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSV 386 (398)
Q Consensus 307 ~~~el~~~v~~~~~~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~ 386 (398)
..++|.++++++|++|++.||.++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+|+|+|||+||++|++|+
T Consensus 243 ~~~~i~~~v~~~g~eII~~kG~ts~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv- 321 (375)
T 7mdh_A 243 LEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGD- 321 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCee-
Confidence 8889999999999999999999999999999999999999877899999999999995599999999999999999999
Q ss_pred eeEeec-cCCCC
Q 015897 387 CREMVI-MNLSR 397 (398)
Q Consensus 387 ~~~i~~-l~L~~ 397 (398)
+++++ ++|++
T Consensus 322 -~~iv~~l~L~~ 332 (375)
T 7mdh_A 322 -YELATDVSNDD 332 (375)
T ss_dssp -CEECCCCCCCH
T ss_pred -EEecCCCCCCH
Confidence 88985 99875
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-65 Score=509.23 Aligned_cols=299 Identities=45% Similarity=0.696 Sum_probs=266.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
....||+|+||+|+||+++++.|+++++++.++++.|+|+|++...+.++|.+|||+|+.++....+.++++++++++||
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a 101 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV 101 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence 44679999999899999999999999999988888899998877778899999999999888877888899999999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCC-CceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~-~kvig~gt~lDs 252 (398)
|+||+++|.||||||+|.||+..|++|++++++.|.++|+|+++||++|||+|+++++++++.++++ +|+||++|.||+
T Consensus 102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs 181 (345)
T 4h7p_A 102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDH 181 (345)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHH
T ss_pred CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhH
Confidence 9999999999999999999999999999999999999977999999999999999999999876655 489999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHH
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~ 332 (398)
+|++++||+++|+++++|++++||||||++|||+||+++|+|+|+.+++.+ +|..+++.++++++|++|++.||.+++.
T Consensus 182 ~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~-~~~~~~~~~~v~~~g~eIi~~kg~ss~~ 260 (345)
T 4h7p_A 182 NRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKD-DALDDDFVQVVRGRGAEIIQLRGLSSAM 260 (345)
T ss_dssp HHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC-------HHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcch-hhHHHHHHHHHHhhhhhhhhcCCCcchh
Confidence 999999999999999999987899999999999999999999999998865 4566789999999999999999987777
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEeC-CccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTN-GNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 333 s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~-G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
++|.++++.+++|+.+.++..+++++++++ | +||+|+|+|||+||+++ +|. .++++ ++|++
T Consensus 261 s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g-~YGi~~~v~~s~Pv~~~-~G~--~~iv~~l~l~~ 323 (345)
T 4h7p_A 261 SAAKAAVDHVHDWIHGTPEGVYVSMGVYSDEN-PYGVPSGLIFSFPCTCH-AGE--WTVVSGKLNGD 323 (345)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCEEEEEECTTC-TTCCCSSCEEEEEEEEE-TTE--EEECCSCC---
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEEEeCCC-CcCCCCCEEEEEEEEEe-CCE--EEEeCCCCCCH
Confidence 799999999999997767788888888885 7 89999999999999998 566 45554 77764
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-66 Score=510.99 Aligned_cols=299 Identities=45% Similarity=0.712 Sum_probs=270.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+|+||+|+||+++++.|+.++++++++++.|+|+|++.++++++|.++||+|+.+++..++.+++++|++++|||
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence 46899999988999999999999999999888999999877655679999999999987677777888888999999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCe-EEEEECCCchhHHHHHHHHCCCCCCceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a-~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~ 253 (398)
+||+++|.||+|||+|.|++.+|+++++++++.++++ +|++ |+|++|||+|++|++++|+++++|+++||++|.||++
T Consensus 82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~ 160 (333)
T 5mdh_A 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN 160 (333)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHH
Confidence 9999999999999999999999999999999999999 6887 7999999999999999999877888889999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEE--cCccc--hhhcccccccHHHHHHHHHhhhHHHHHhcCCC
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI--NGLPV--KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I--~G~p~--~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t 329 (398)
|++++||+++|++|++|++++||||||++|||+||+++| +|+|+ .+++.+++|..+++.++++++|++|++.+|.+
T Consensus 161 R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k~~s 240 (333)
T 5mdh_A 161 RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLS 240 (333)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHHccCch
Confidence 999999999999999999855799999999999999986 68865 47777777888899999999999999987776
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
++.++|..+++.+++|+.++.+++|+|||++++|++||+|+|+|||+||++ ++|+ +++++ ++|++
T Consensus 241 sa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv--~~iv~~l~L~~ 306 (333)
T 5mdh_A 241 SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKT--WKIVEGLPIND 306 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTE--EEECCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCe--EEEcCCCCCCH
Confidence 555678889999999885433578999999999966999889999999999 9999 88887 99975
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-65 Score=502.42 Aligned_cols=285 Identities=22% Similarity=0.319 Sum_probs=245.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
++++||+|||| |+||+++++.|+.++++++ +.| + |+++++++|.++||+|+. ++..++++++++|++++||
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l~l--~--D~~~~k~~g~a~DL~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE---IGI--V--DIFKDKTKGDAIDLEDAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE--E--eCChHHHHHHHhhHhhhh-hhcCCcEEEECcHHHhcCC
Confidence 45689999995 9999999999999998763 554 4 678899999999999987 5555677788899999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNPvdi~t~~~~k~~-g~p~~rviG~gt~LD~ 155 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCchHHHHHHHHHhc-CCCHHHeeeecccCcH
Confidence 99999999999999999999999999999999999998 699999999999999999999997 7887 78899999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc----ccccHHHHHHHHHhhhHHHHHhcCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~----~~~~~~el~~~v~~~~~~ii~~~G~ 328 (398)
+|++++||+++|+++++|++ |||||||++|||+||+++|+|+|+.+++.+ ++|..+++.++++++|++|++.||.
T Consensus 156 ~R~~~~la~~lgv~~~~V~~-~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~ 234 (326)
T 3vku_A 156 ARFRQSIAKMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGA 234 (326)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHCeE-EEEcCCCCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 999999999999999999999999988765 4677889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|+ +|.++++.+++|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 235 t~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~lg~~Gv--~~iv~l~L~~ 296 (326)
T 3vku_A 235 TFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGL-NDIYIGTPAVINRNGI--QNILEIPLTD 296 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEEE-GGGE-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred chHH-HHHHHHHHHHHHh--cCCCceEEEEeeccC-ccCC-CceEEEEEEEEcCCce--EEEecCCCCH
Confidence 9885 5677788888888 689999999999999 7999 5999999999999999 8999999975
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-64 Score=497.55 Aligned_cols=287 Identities=21% Similarity=0.338 Sum_probs=261.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCccccc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELF 170 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal 170 (398)
|.++++||+|||| |.||+++++.|+..+++++ +.| + |+++++++|.++||+|+. ++. ..+++++++++++
T Consensus 1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~---l~l--~--D~~~~k~~g~a~DL~~~~-~~~~~~v~i~~~~~~a~ 71 (326)
T 3pqe_A 1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDE---LVV--I--DVNKEKAMGDVMDLNHGK-AFAPQPVKTSYGTYEDC 71 (326)
T ss_dssp -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSCHHHHHHHHHHHHHTG-GGSSSCCEEEEECGGGG
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EEE--E--ecchHHHHHHHHHHHhcc-ccccCCeEEEeCcHHHh
Confidence 4456789999995 9999999999999998753 554 4 678899999999999984 665 4566777889999
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCc
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~ 249 (398)
+|||+||+++|.||+||++|.|++.+|+++++++++.|.++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.
T Consensus 72 ~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd~~t~~~~k~~-g~p~~rviG~gt~ 149 (326)
T 3pqe_A 72 KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFS-GLPKERVIGSGTT 149 (326)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTH
T ss_pred CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHHHHHHHHHHhc-CCCHHHEEeeccc
Confidence 99999999999999999999999999999999999999999 699999999999999999999997 7887 78999999
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc----ccccHHHHHHHHHhhhHHHHHh
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~----~~~~~~el~~~v~~~~~~ii~~ 325 (398)
||++|++++||+++|+++++|++ |||||||++|||+||+++|+|+|+.+++++ ++|..++|.++++++|++|++.
T Consensus 150 LD~~R~~~~la~~lgv~~~~V~~-~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~ 228 (326)
T 3pqe_A 150 LDSARFRFMLSEYFGAAPQNVCA-HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK 228 (326)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHcee-eeeecCCCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC
Confidence 99999999999999999999997 899999999999999999999999998765 4577889999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
||.++|+ +|.++++.+++|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|+ +++++|+|++
T Consensus 229 kG~t~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~lg~~Gv--~~iv~l~L~~ 293 (326)
T 3pqe_A 229 KGATYYG-VAMSLARITKAIL--HNENSILTVSTYLDG-QYGA-DDVYIGVPAVVNRGGI--AGITELNLNE 293 (326)
T ss_dssp HSCCCHH-HHHHHHHHHHHHH--TTCCEEECCEEEEES-GGGC-EEEEEECCEEEETTEE--EEECCCCCCH
T ss_pred CCCcHHH-HHHHHHHHHHHHh--cCCCcEEEEEEeecc-ccCC-CceEEEEEEEEcCCce--EEEecCCCCH
Confidence 9999886 6778888888888 689999999999999 8999 5999999999999999 8999999975
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-63 Score=492.71 Aligned_cols=284 Identities=20% Similarity=0.319 Sum_probs=254.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CCCcceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~d 172 (398)
.+++||+|||| |+||+++++.|+.++++++ +.| + |+++++++|.++||+|+. ++....+ +.+++|++++|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l~L--~--Di~~~~~~g~a~DL~~~~~~~~~~~i-~~~~d~~~~~~ 87 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADE---LAL--V--DVIEDKLKGEMMDLQHGSLFLKTPKI-VSSKDYSVTAN 87 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSCHHHHHHHHHHHHHTGGGCSCCEE-EECSSGGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EEE--E--eCChHHHHHHHHhhhhhhhccCCCeE-EEcCCHHHhCC
Confidence 45689999996 9999999999999987653 544 4 677899999999999986 2222233 44678999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||+++|.||+|||+|+|++.+|++|+++++++|+++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 88 aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvdi~t~~~~k~s-g~p~~rviG~gt~LD 165 (331)
T 4aj2_A 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKIS-GFPKNRVIGSGCNLD 165 (331)
T ss_dssp EEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHHHHHHHHHHh-CCCHHHEEeeccccH
Confidence 999999999999999999999999999999999999999 799999999999999999999998 7887 7899999999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc-------ccccHHHHHHHHHhhhHHHHH
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-------HKWLEEGFTETIQKRGGLLIK 324 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~-------~~~~~~el~~~v~~~~~~ii~ 324 (398)
++|++++||+++|+++++|+. |||||||++|||+||+++|+|+|+.+++.+ ++| +++.++++++|++|++
T Consensus 166 ~~R~~~~la~~lgv~~~~V~~-~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~--~~i~~~v~~~g~eIi~ 242 (331)
T 4aj2_A 166 SARFRYLMGERLGVHPLSCHG-WVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQW--KDVHKQVVDSAYEVIK 242 (331)
T ss_dssp HHHHHHHHHHHHTSCGGGCBC-CEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTCTTCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHCEE-eEEecCCCceeEeeecCeECCEEHHHHHhhccCCCCHHHH--HHHHHHHHHhHHHHhh
Confidence 999999999999999999997 899999999999999999999999988642 233 6899999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 325 ~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.||.++|+ +|.++++++.+++ +|++.++|+|++++| +||+++|+|||+||++|++|+ +++++++|++
T Consensus 243 ~kg~t~~a-~a~a~a~~~~ail--~d~~~~~~vs~~~~g-~ygi~~~v~~s~P~~lg~~Gv--~~iv~l~L~~ 309 (331)
T 4aj2_A 243 LKGYTSWA-IGLSVADLAESIM--KNLRRVHPISTMIKG-LYGIKEDVFLSVPCILGQNGI--SDVVKVTLTP 309 (331)
T ss_dssp HHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-GGGCCSCCEEEEEEEEETTEE--EEEECCCCCH
T ss_pred cCCCCchh-HHHHHHHHHHHHH--hCCCCeEEEEEecCC-ccCCcCceEEEEEEEEcCCee--EEEccCCCCH
Confidence 99999884 6667777777777 789999999999999 899988999999999999999 8999999975
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-62 Score=483.49 Aligned_cols=281 Identities=21% Similarity=0.353 Sum_probs=243.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADi 175 (398)
|||+|||| |+||+++++.|+.++++++ +.| + |+++++++|.++||+|+.+....+..+. +++|++++|||+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~e---l~l--~--D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDv 72 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKE---VVM--V--DIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDV 72 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSE---EEE--E--CSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCE
Confidence 69999995 9999999999999998653 544 4 6777899999999999874333344443 588999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~R 254 (398)
||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++|+|++|||+|++|++++|.+ ++|+ |+||+||.||++|
T Consensus 73 Vii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd~~t~~~~k~~-g~p~~rviG~~t~LD~~R 150 (314)
T 3nep_X 73 CIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLDVMTYVAYEAS-GFPTNRVMGMAGVLDTGR 150 (314)
T ss_dssp EEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHHHHHHHHHHHH-TCCGGGEEECCHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchhHHHHHHHHhc-CCChHHEEeecCchHHHH
Confidence 999999999999999999999999999999999999 699999999999999999999987 7887 7899999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCC-CcHHH
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR-SSAAS 333 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~-t~~~s 333 (398)
++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.++ | .+++.++++++|++|++.||. +.| +
T Consensus 151 ~~~~la~~lgv~~~~v~~-~ViG~Hg~t~vp~~S~~~v~g~p~~~~~~~~-~-~~~i~~~v~~~g~eIi~~kg~sa~~-a 226 (314)
T 3nep_X 151 FRSFIAEELDVSVRDVQA-LLMGGHGDTMVPLPRYTTVGGIPVPQLIDDA-R-IEEIVERTKGAGGEIVDLMGTSAWY-A 226 (314)
T ss_dssp HHHHHHHHHTCCGGGEEE-EEEESSGGGEEEEEEEEEETTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHHHHSSCCCH-H
T ss_pred HHHHHHHHhCcCHHHeEE-EEECCCCCcEEeeeecCeECcEehhhccCHH-H-HHHHHHHHHHhHHHHHhccCCcHHH-H
Confidence 999999999999999997 8999999999999999999999999887544 3 378999999999999998884 444 4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++.+.+|+ .++++|+|+|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 227 ~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~lg~~Gv--~~v~~l~L~~ 284 (314)
T 3nep_X 227 PGAAAAEMTEAIL--KDNKRILPCAAYCDG-EYGL-DDLFIGVPVKLGAGGV--EEVIEVDLDA 284 (314)
T ss_dssp HHHHHHHHHHHHH--HTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccCC-CceEEEEEEEEeCCEE--EEecCCCCCH
Confidence 6777777777777 679999999999999 8999 8999999999999999 8999999975
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-62 Score=473.02 Aligned_cols=270 Identities=23% Similarity=0.309 Sum_probs=238.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~~~eal~dADi 175 (398)
|||+|||| |+||+++++.|+.++++++ ++| + |+++++++|+++||+|+...+..... ..+++|++++|||+
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~e---l~L--~--Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDv 72 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IAL--V--DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEE--E--CSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE--E--eCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCE
Confidence 79999995 9999999999999999874 655 4 77889999999999998733333322 34678999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~R 254 (398)
||+++|.||||||+|.|++..|++|+++++++|.++ +|+++++++|||+|++|++++|.+ ++|+ |+||++|.||++|
T Consensus 73 VvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPvd~~t~i~~k~s-g~p~~rvig~gT~LDs~R 150 (294)
T 2x0j_A 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKES-GKPRNEVFGMGNQLDSQR 150 (294)
T ss_dssp EEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHHS-SCCTTSEEECCHHHHHHH
T ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcchhhHHhhHHHc-CCChhhEEEeeeEEeHHH
Confidence 999999999999999999999999999999999999 699999999999999999999998 5666 8999999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHHH
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~ 334 (398)
|+++|++++++++. + .+||||||++|||+||+++++|.+. .+++.++++++|++|++.||.+.|+ +
T Consensus 151 ~~~~l~~~~~~~~~--~-~~V~G~HGdt~vp~~S~~~v~g~~~----------~~~i~~~~~~~g~eIi~~kGst~~a-~ 216 (294)
T 2x0j_A 151 LKERLYNAGARNIR--R-AWIIGEHGDSMFVAKSLADFDGEVD----------WEAVENDVRFVAAEVIKRKGATIFG-P 216 (294)
T ss_dssp HHHHHHHTTCEEEC--C-CCEEBCSSTTCEECGGGCCEESCCC----------HHHHHHHHHTHHHHHHHHHSSCCHH-H
T ss_pred HHHHHhhcccCCcc--e-eEEEecCCCcEEEeeeccCCCCchh----------HHHHHHHHhhhheEEEecCcccchh-H
Confidence 99999999987654 3 4899999999999999999999752 3567889999999999999998874 5
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 335 A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.++++.+++|+ +|+++++|++++++| +||+ +|+|||+||++|++|+ + +++++|++
T Consensus 217 a~a~~~~~~ail--~d~~~v~~~s~~l~g-~yG~-~~v~~s~P~~lg~~Gv--e-i~~l~L~~ 272 (294)
T 2x0j_A 217 AVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGI-ENVAVGVPAKLGKNGA--E-VADIKLSD 272 (294)
T ss_dssp HHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--E-ECCCCCCH
T ss_pred HHHHHHHHHHHH--cCCCcEEEEEEEEec-CCCC-ccEEEEEEEEEeCCEE--E-EeCCCCCH
Confidence 666666666667 799999999999999 7999 7999999999999997 4 88999975
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-61 Score=473.05 Aligned_cols=285 Identities=21% Similarity=0.338 Sum_probs=252.3
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc---ceEEEecCccc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGINPYE 168 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~---~~v~i~~~~~e 168 (398)
|+++++||+|||| |.+|+++++.|+..++ ++ +. |+|++.++++++|.++||.|+. ++. .+++. +++|+
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~---v~--l~D~~~~~~~~~g~a~dl~~~~-~~~~~~~~i~~-t~d~~ 74 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKEL-AD---VV--LVDIPQLENPTKGKALDMLEAS-PVQGFDANIIG-TSDYA 74 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTC-CE---EE--EECCGGGHHHHHHHHHHHHHHH-HHHTCCCCEEE-ESCGG
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCC-Ce---EE--EEeccchHHHHHHhhhhHHHhh-hhccCCCEEEE-cCCHH
Confidence 5455689999995 9999999999999887 52 54 4544322789999999999986 332 23333 45799
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEec
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~g 247 (398)
+++|||+||+++|.||+|||+|.|++.+|+++++++++.+.++ +|++|+|++|||+|++|++++|++ ++|+ |+||+|
T Consensus 75 a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPvd~~t~~~~k~s-g~p~~rviG~g 152 (315)
T 3tl2_A 75 DTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQS 152 (315)
T ss_dssp GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECC
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChHHHHHHHHHHhc-CCChHHEEeec
Confidence 9999999999999999999999999999999999999999999 699999999999999999999987 7887 789999
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHH--h
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--K 325 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~--~ 325 (398)
|.||++|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.++. .++|.++++++|++|++ +
T Consensus 153 t~LD~~R~~~~la~~lgv~~~~v~~-~viG~Hg~t~vp~~S~~~v~g~p~~~~~~~~~--~~~i~~~v~~~g~eii~~~~ 229 (315)
T 3tl2_A 153 GVLDTARFRTFIAQELNLSVKDITG-FVLGGHGDDMVPLVRYSYAGGIPLETLIPKER--LEAIVERTRKGGGEIVGLLG 229 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEC-CEEBCSGGGCEECGGGCEETTEEGGGTSCHHH--HHHHHHHHHTHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhCcCHHHcee-eEecCCCCcceeecccCeECCEEHHHhCCHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997 89999999999999999999999999876543 46899999999999999 7
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.+.|+ +|.++++.+++|+ .++++|+|+|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 230 kgst~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~~g~~Gv--~~v~~l~L~~ 294 (315)
T 3tl2_A 230 NGSAYYA-PAASLVEMTEAIL--KDQRRVLPAIAYLEG-EYGY-SDLYLGVPVILGGNGI--EKIIELELLA 294 (315)
T ss_dssp SSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred CCcchHH-HHHHHHHHHHHHH--cCCCcEEEEEEeccC-ccCC-CceEEEEEEEEeCCEE--EEEcCCCCCH
Confidence 8877764 7777888888888 689999999999999 8999 7999999999999999 8999999975
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-61 Score=473.17 Aligned_cols=286 Identities=20% Similarity=0.306 Sum_probs=247.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
|++.+||+|||| |+||+++++.|+.++++++ |.| + |++++++++.++||.|+. ++..+++++.+++++++|
T Consensus 2 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e---l~L--~--Di~~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~ 72 (318)
T 1ez4_A 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---FVI--V--DVVKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKD 72 (318)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHcCCCCCE---EEE--E--eCCchHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCC
Confidence 455689999996 9999999999999998763 554 4 667899999999999987 565677777789999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||+++|.||+||++|.|++.+|++++++++++|+++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD 150 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFS-GFPKERVIGSGTSLD 150 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEeccccch
Confidence 999999999999999999999999999999999999999 699999999999999999999998 7887 7899999999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc---HHHHHHHHHhhhHHHHHhcCC
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~---~~el~~~v~~~~~~ii~~~G~ 328 (398)
++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+..|. .+++.+++++++++|++.+|.
T Consensus 151 ~~R~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~ 229 (318)
T 1ez4_A 151 SSRLRVALGKQFNVDPRSVDA-YIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGA 229 (318)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCcChhHEEE-EEecccCCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCCc
Confidence 999999999999999999995 9999999999999999999999999887544453 468889999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|+ .|.++++.+++|+ +|++.+++++++++| +||+| |+|||+||++|++|+ +++++++|++
T Consensus 230 t~~~-~a~a~~~~~~ai~--~~~~~~~~vs~~~~G-~yg~~-~~~~~vP~~ig~~Gv--~~i~~~~L~~ 291 (318)
T 1ez4_A 230 TFYG-IGTALMRISKAIL--RDENAVLPVGAYMDG-QYGLN-DIYIGTPAIIGGTGL--KQIIESPLSA 291 (318)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred chHH-HHHHHHHHHHHHH--hCCCcEEEEEEeecC-ccCCC-ceEEEEEEEEeCCee--EEEcCCCCCH
Confidence 8775 6677777777778 789999999999999 79997 999999999999999 8888998874
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-60 Score=465.29 Aligned_cols=269 Identities=23% Similarity=0.319 Sum_probs=242.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dAD 174 (398)
|||+|||| |++|+++++.|+.++++++ +.| + |+++++++|.++||+|....+. .+++.+++ +++++|||
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~---v~L--~--D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IAL--V--DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEE--E--CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE--E--ECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence 69999996 9999999999999988653 554 4 6788899999999999873232 34555545 99999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+++|.||+|||+|.|++.+|++|+++++++|.++ +|++++|++|||+|++|++++|++ ++|+ |+||+||.||++
T Consensus 72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd~~t~~~~k~~-g~p~~rviG~gt~LD~~ 149 (294)
T 1oju_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKES-GKPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHHS-CCCTTSEEECSHHHHHH
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhc-CCCHHHEeecccccHHH
Confidence 9999999999999999999999999999999999999 799999999999999999999997 7887 889999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHH
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s 333 (398)
|++++|| ++|++|++ + ++||||||++|||+||+++|+|+| ..+++.++++++|++|++.||.++|+
T Consensus 150 R~~~~la-~l~v~~~~-~-~~V~G~Hg~t~vp~~s~~~v~g~~----------~~~~~~~~v~~~g~eii~~kG~t~~~- 215 (294)
T 1oju_A 150 RLKERLY-NAGARNIR-R-AWIIGEHGDSMFVAKSLADFDGEV----------DWEAVENDVRFVAAEVIKRKGATIFG- 215 (294)
T ss_dssp HHHHHHH-HTTCBSCC-C-CCEEBCSSTTCEECGGGCCCBSCC----------CHHHHHHHHHTTHHHHHHHHSSCCHH-
T ss_pred HHHHHHH-HhCCCccC-c-eEEEecCCCceeeecccceECCcC----------hHHHHHHHHHHHHHHHHHhcCCcchH-
Confidence 9999999 99999999 7 499999999999999999999988 24789999999999999999988764
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++.+++|+ .|+++|+|+|++++| +||++ |+|||+||++|++|+ + +++++|++
T Consensus 216 ~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~~~~s~P~~~g~~Gv--~-v~~l~L~~ 272 (294)
T 1oju_A 216 PAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGIE-NVAVGVPAKLGKNGA--E-VADIKLSD 272 (294)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGCE-EEEEEEEEEEETTEE--E-ECCCCCCH
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEEecccc-cCCCC-ceEEEEEEEEeCCEE--E-EecCCCCH
Confidence 6778888888888 689999999999999 79995 999999999999999 7 89999875
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-61 Score=472.77 Aligned_cols=283 Identities=21% Similarity=0.302 Sum_probs=247.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (398)
+++||+|||| |.+|+++++.|+..++. + +. |+ |+++++++|.++||+|+........++. ++++++++||
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~---v~--l~--Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~a 74 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLG-D---VV--LF--DIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENS 74 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC-E---EE--EE--CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCc-e---EE--EE--eCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCC
Confidence 3579999995 99999999999998873 2 44 44 6677889999999999863222233333 4679999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.||+|||+|.|++.+|++++++++++|.++ +|++++|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 75 DvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD~ 152 (321)
T 3p7m_A 75 DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLDIMVNMLQKFS-GVPDNKIVGMAGVLDS 152 (321)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEEECHHHHH
T ss_pred CEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEEecCchHHHHHHHHHhc-CCCHHHEEeeccchHH
Confidence 99999999999999999999999999999999999999 599999999999999999999997 7887 88999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc----HHHHHHHHHhhhHHHHHhcC-
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKWG- 327 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~----~~el~~~v~~~~~~ii~~~G- 327 (398)
+|++++||+++|+++++|+. +||||||++|||+||+++|+|+|+.+++++ .|. .+++.++++++|++|++.+|
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi~~~g~ 230 (321)
T 3p7m_A 153 ARFRTFLADELNVSVQQVQA-YVMGGHGDTMVPLTKMSNVAGVSLEQLVKE-GKLKQERLDAIVSRTRSGGGEIVALLKT 230 (321)
T ss_dssp HHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECTTTCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCHHHceE-eeecCcCCceeeeeeeceECCEehhhhccc-cCCCHHHHHHHHHHHHhhhHHHHHhcCC
Confidence 99999999999999999997 899999999999999999999999988742 332 35688899999999998544
Q ss_pred -CCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeC-CccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 328 -RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN-GNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 328 -~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~-G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.+.| ++|.++++.+++|+ +|+++|+|+|++++ | +||+|+|+|||+||++|++|+ +++ +++|++
T Consensus 231 gsa~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~~g-~ygi~~~v~~s~P~~~g~~Gv--~~v-~l~L~~ 295 (321)
T 3p7m_A 231 GSAYY-APAAAGIQMAESFL--KDKKMILPCAAKVKAG-MYGLDEDLFVGVPTEISANGV--RPI-EVEISD 295 (321)
T ss_dssp SCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEECTT-GGGCSSCEEEEEEEEEETTEE--EEC-CCCCCH
T ss_pred CChHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEccCc-ccCCCCCeEEEEEEEEcCCEE--EEe-CCCCCH
Confidence 4444 47778888888888 78999999999999 8 899988999999999999999 888 999875
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-60 Score=468.99 Aligned_cols=285 Identities=21% Similarity=0.309 Sum_probs=251.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
++.+||+|||| |+||+++++.|+.++++++ |. |+ |++++++++.++||.|+. ++..+++++.+++++++||
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~e---l~--L~--Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE---IG--IV--DIFKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EE--EE--CSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCE---EE--EE--eCCchHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCC
Confidence 44589999996 9999999999999998653 54 44 667899999999999987 5656777777899999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.||+||++|.|++.+|++++++++++|+++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~ 155 (326)
T 2zqz_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEEccccchH
Confidence 99999999999999999999999999999999999999 699999999999999999999998 7887 78999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcc-ccccc---HHHHHHHHHhhhHHHHHhcCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWL---EEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~-~~~~~---~~el~~~v~~~~~~ii~~~G~ 328 (398)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++. +..|. .+++.+++++++++|++.+|.
T Consensus 156 ~R~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kG~ 234 (326)
T 2zqz_A 156 ARFRQSIAEMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGA 234 (326)
T ss_dssp HHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCChhheEE-EEecccCCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcCCC
Confidence 99999999999999999995 99999999999999999999999988875 33353 358999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|+ +|.++++.+.+|+ +|++.+++++++++| +||+| |+|||+||++|++|+ +++++++|++
T Consensus 235 t~~~-~a~aa~~~~~ai~--~~~~~~~~vsv~~~G-~yg~~-~~~~svP~~ig~~Gv--~~i~~~~L~~ 296 (326)
T 2zqz_A 235 TFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGLN-DIYIGTPAVINRNGI--QNILEIPLTD 296 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred cHHH-HHHHHHHHHHHHH--hCCCcEEEEEEeccC-ccCCC-ceEEEEEEEEcCCee--EEEecCCCCH
Confidence 8775 6667777777778 789999999999999 79997 999999999999999 7888898874
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-60 Score=463.18 Aligned_cols=282 Identities=20% Similarity=0.277 Sum_probs=254.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|||| |+||+++++.|+.++++++ |.| + |++++++++.++||.|+. ++..++.++.+++++++|||+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~e---l~L--~--Di~~~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVARE---VVL--V--DLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSSHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCChhHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence 59999996 9999999999999998763 554 4 567899999999999987 5555666666789999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl 255 (398)
|+++|.||+||++|.|++.+|++++++++++|+++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.||++|+
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~~R~ 149 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALS-GLPPGRVVGSGTILDTARF 149 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHHHHH
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchHHHHHHHHHHc-CCCHHHEEecCcchhHHHH
Confidence 99999999999999999999999999999999999 799999999999999999999998 7887 78999999999999
Q ss_pred HHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc--c---cHHHHHHHHHhhhHHHHHhcCCCc
Q 015897 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--W---LEEGFTETIQKRGGLLIKKWGRSS 330 (398)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~--~---~~~el~~~v~~~~~~ii~~~G~t~ 330 (398)
+++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. | ..+++.+++++++++|++.+|.++
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~ 228 (310)
T 2xxj_A 150 RALLAEYLRVAPQSVHA-YVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATY 228 (310)
T ss_dssp HHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCCC
T ss_pred HHHHHHHhCcCHHHeEE-EEecccCCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCcH
Confidence 99999999999999997 99999999999999999999999988765432 3 346888999999999999999987
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 331 ~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|+ .|.++++.+++|+ +|+++++++|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 229 ~~-~a~a~~~~~~ai~--~~~~~~~~vs~~~~G-~yg~-~~~~~~vP~~ig~~Gv--~~i~~~~L~~ 288 (310)
T 2xxj_A 229 YG-IGAGLARLVRAIL--TDEKGVYTVSAFTPE-VAGV-LEVSLSLPRILGAGGV--AGTVYPSLSP 288 (310)
T ss_dssp HH-HHHHHHHHHHHHH--TTCCEEEEEEEEEEE-ETTE-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HH-HHHHHHHHHHHHH--cCCCCEEEEEEEEcC-ccCC-ccEEEEEEEEEeCCee--EEEcCCCCCH
Confidence 75 5777777777777 789999999999999 7999 8999999999999999 8888898874
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-60 Score=466.67 Aligned_cols=282 Identities=21% Similarity=0.324 Sum_probs=241.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCcccccCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFED 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~d 172 (398)
+++||+|||| |.+|+++++.|+..++. + +. |+ |+++++++|.++||+|+.... ..++.. ++++++++|
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~-~---v~--L~--Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d~~a~~~ 75 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELG-D---VV--LF--DIAEGTPQGKGLDIAESSPVDGFDAKFTG-ANDYAAIEG 75 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC-E---EE--EE--CSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESSGGGGTT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCC-e---EE--EE--eCCchhHHHHHHHHhchhhhcCCCCEEEE-eCCHHHHCC
Confidence 4679999996 99999999999998872 2 44 44 667788999999999986312 123433 456899999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||+++|.||+||++|.|++.+|++++++++++|+++ +|+|++|++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD 153 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAMVWALQKFS-GLPAHKVVGMAGVLD 153 (324)
T ss_dssp CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHH
T ss_pred CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCCcHHHHHHHHHhc-CCCHHHEEeecCccH
Confidence 999999999999999999999999999999999999999 699999999999999999999987 7887 7899999999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccc----cHHHHHHHHHhhhHHHHHhc-
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW----LEEGFTETIQKRGGLLIKKW- 326 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~----~~~el~~~v~~~~~~ii~~~- 326 (398)
++|++++||+++|+++++|+. +||||||+++||+||+++|+|+|+.+++++ .| ..+++.++++++|++|++.+
T Consensus 154 ~~R~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi~~~g 231 (324)
T 3gvi_A 154 SARFRYFLSEEFNVSVEDVTV-FVLGGHGDSMVPLARYSTVAGIPLPDLVKM-GWTSQDKLDKIIQRTRDGGAEIVGLLK 231 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCHHHCeE-EEEcCCCCceeeehhhCeECCEEHHHhhhc-cCCCHHHHHHHHHHHHHhHHHHHHhcC
Confidence 999999999999999999997 899999999999999999999999988743 33 23578889999999999854
Q ss_pred -CCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 327 -GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 327 -G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.+.| ++|.++++.+++|+ +|+++|+|||++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 232 kgsa~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~~g~~Gv--~~v~~l~L~~ 296 (324)
T 3gvi_A 232 TGSAFY-APAASAIQMAESYL--KDKKRVLPVAAQLSG-QYGV-KDMYVGVPTVIGANGV--ERIIEIDLDK 296 (324)
T ss_dssp SCCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred CCcHHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-ccCC-CceEEEEEEEEeCCEE--EEecCCCCCH
Confidence 44444 47778888888888 789999999999999 7999 5999999999999999 8899999975
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-60 Score=468.44 Aligned_cols=283 Identities=27% Similarity=0.379 Sum_probs=241.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+++||+||||+|+||+++++.++..++.++ |.| + |+++++++|.++||+|+.++ ..++.++++.+++++||
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~e---vvL--i--Di~~~k~~g~a~DL~~~~~~-~~~i~~t~d~~~al~dA 77 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPN---LCL--Y--DPFAVGLEGVAEEIRHCGFE-GLNLTFTSDIKEALTDA 77 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSC---EEE--E--CSCHHHHHHHHHHHHHHCCT-TCCCEEESCHHHHHTTE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCE---EEE--E--eCCchhHHHHHHhhhhCcCC-CCceEEcCCHHHHhCCC
Confidence 4467999999779999999999999998664 654 4 67889999999999998643 23566777778999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeE-EEEECCCchhHHHHHHHHCCCCCCceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~-vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs 252 (398)
|+||+++|.||+||++|.|++.+|++|++++++.|+++ +|+++ +|++|||+|++|++++|++ ++|++++.++|.||+
T Consensus 78 DvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~-~p~a~~vlvvsNPvd~~t~i~~k~s-g~p~~rv~g~t~LDs 155 (343)
T 3fi9_A 78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSY-CPDCKHVIIIFNPADITGLVTLIYS-GLKPSQVTTLAGLDS 155 (343)
T ss_dssp EEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHH-CTTCCEEEECSSSHHHHHHHHHHHH-TCCGGGEEEECCHHH
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcEEEEEecCchHHHHHHHHHHc-CCCcceEEEecCcHH
Confidence 99999999999999999999999999999999999999 69996 9999999999999999998 698844446789999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccc---cHHHHHHHHHhhhHHHHHhcCCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLLIKKWGRS 329 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~---~~~el~~~v~~~~~~ii~~~G~t 329 (398)
+|++++||+++|++|++|+++|||||||++|||+||+++|+|+|+.+++....+ ..+++.++++++|++|++.||.|
T Consensus 156 ~R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~s 235 (343)
T 3fi9_A 156 TRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRS 235 (343)
T ss_dssp HHHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccCCC
Confidence 999999999999999999866999999999999999999999999988643221 23589999999999999999998
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
+|+++|.++++.+++|+ +|++.++|+|++++| + +. +|+|||+||++|++|+ +.+ +++
T Consensus 236 s~~s~A~a~~~~~~ail--~d~~~v~~~s~~~~g-~-~~-~~v~~s~P~~lg~~Gv--~~~-~~~ 292 (343)
T 3fi9_A 236 SFQSPSYVSIEMIRAAM--GGEAFRWPAGCYVNV-P-GF-EHIMMAMETTITKDGV--KHS-DIN 292 (343)
T ss_dssp CCHHHHHHHHHHHHHHT--TSSCCCSCEEEEEEE-T-TE-EEEEEEESEEEETTEE--EEC-CGG
T ss_pred cHHhHHHHHHHHHHHHH--hCCCceEEEEEEEeC-C-Cc-CceEEEeEEEEeCCce--EEE-ecC
Confidence 88778888889999999 788899999999998 4 44 8999999999999998 555 444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-59 Score=458.69 Aligned_cols=284 Identities=20% Similarity=0.294 Sum_probs=254.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (398)
+++||+|||| |+||+++++.|+.++++++ |.| + |++++++++.++||+|.. ++. .+++++.+++++++||
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~e---i~L--~--Di~~~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a~~~a 75 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDE---LVI--I--DLDTEKVRGDVMDLKHAT-PYSPTTVRVKAGEYSDCHDA 75 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSE---EEE--E--CSCHHHHHHHHHHHHHHG-GGSSSCCEEEECCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCChhHhhhhhhhHHhhh-hhcCCCeEEEeCCHHHhCCC
Confidence 3579999996 9999999999999887653 554 4 667889999999999985 555 4666666899999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.|++||++|.|++.+|++++++++++|+++ +|++|+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 76 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~lD~ 153 (317)
T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFS-GLPKERVIGSGTILDS 153 (317)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHh-CCCHHHEEecCccccH
Confidence 99999999999999999999999999999999999999 699999999999999999999998 7887 78999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccc---cHHHHHHHHHhhhHHHHHhcCCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLLIKKWGRS 329 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~---~~~el~~~v~~~~~~ii~~~G~t 329 (398)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+..| ..+++.+++++++++|++.+|.+
T Consensus 154 ~r~~~~la~~l~v~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~ 232 (317)
T 3d0o_A 154 ARFRLLLSEAFDVAPRSVDA-QIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGAT 232 (317)
T ss_dssp HHHHHHHHHHHTSCGGGCBC-CEEBCSSTTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCcChhhEEE-EEEecCCCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCCCCc
Confidence 99999999999999999995 999999999999999999999999988754445 24678899999999999999998
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|+ .|.++++.+++|+ +|+++++++|++++| +||+| |+|||+||++|++|+ +++++++|++
T Consensus 233 ~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~~-~~~~~vP~~ig~~Gv--~~i~~~~l~~ 293 (317)
T 3d0o_A 233 YYG-VAMGLARITEAIF--RNEDAVLTVSALLEG-EYEEE-DVYIGVPAVINRNGI--RNVVEIPLND 293 (317)
T ss_dssp CHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred hHh-HHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCCC-ceEEEEEEEEeCCee--EEEecCCCCH
Confidence 775 5677777777777 789999999999999 79997 999999999999999 7888888874
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=458.50 Aligned_cols=296 Identities=47% Similarity=0.795 Sum_probs=264.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc----hhhHHHHHHHHhhhcCCCcceEEEecCcccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~----~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (398)
++++||+||||+|+||+++++.|+.++++++++...+.|+ |++ ++++++.++||.|..+++..+++.+++.+++
T Consensus 3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~--Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL--EIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE--CCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE--cCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 4568999999889999999999999998765443455566 455 7889999999999754566677777888999
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCc
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~ 249 (398)
++|||+||+++|.+|++|++|.|++.+|++++++++++++++++|++|+|++|||+|++|++++++++++|+++++++|.
T Consensus 81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~ 160 (329)
T 1b8p_A 81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLR 160 (329)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeec
Confidence 99999999999999999999999999999999999999999833999999999999999999999988899855677799
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCC
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t 329 (398)
||++|+++++|+++|+++++|+..+||||||++++|+||+++++|+|+.+++.+++|..+++.+++++++++|++.||.+
T Consensus 161 Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kg~~ 240 (329)
T 1b8p_A 161 LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVS 240 (329)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhccCCC
Confidence 99999999999999999999997678999999999999999999999998876666777899999999999999999988
Q ss_pred cHHHHHHHHHHHHHHhhcCCC-CCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 330 SAASTAVSIVDAMKSLVTPTP-EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~-~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
+|++.|.++++.+.+|+ .+ +++|+++|++++| +||+|+|+|||+||++ ++|+ +++++ ++|++
T Consensus 241 ~~~~~a~a~~~~~~ai~--~~~~~~~~~~s~~~~g-~yg~~~~~~~s~P~~i-~~Gv--~~i~~~~~l~~ 304 (329)
T 1b8p_A 241 SAASAANAAIDHIHDWV--LGTAGKWTTMGIPSDG-SYGIPEGVIFGFPVTT-ENGE--YKIVQGLSIDA 304 (329)
T ss_dssp CHHHHHHHHHHHHHHHH--HCCTTCCEEEEEECCS-GGGCCTTCEEEEEEEE-ETTE--EEECCCCCCCH
T ss_pred hHHHHHHHHHHHHHHHh--cCCCCcEEEEEEEecC-ccCCCCCeEEEEEEEE-cCCE--EEecCCCCCCH
Confidence 88777778888888888 55 8999999999999 6999999999999999 9999 88988 98874
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-59 Score=460.07 Aligned_cols=287 Identities=25% Similarity=0.368 Sum_probs=242.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
|.++++||+|||| |+||+++++.|+.++++++ |.| + |+++++++|.++||.|+. ++..+++++.+++++++
T Consensus 3 m~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e---v~L--~--Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~ 73 (318)
T 1y6j_A 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANE---LVL--I--DVFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVK 73 (318)
T ss_dssp ----CCCEEEECC-SHHHHHHHHHHHHTTCSSE---EEE--E--CCC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCChHHHHHHHHHHHHhH-HhcCCeEEEECCHHHhC
Confidence 4445789999996 9999999999999998763 554 5 566788999999999987 66667777777899999
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCch
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~l 250 (398)
|||+||+++|.|++||++|.|++.+|+++++++++.|.++ +|++|+|++|||+|++|++++|++ ++|+ |+||+||.|
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~~~k~s-~~p~~rviG~gt~L 151 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWS-GLPVGKVIGSGTVL 151 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHH
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHc-CCCHHHEeccCCch
Confidence 9999999999999999999999999999999999999999 699999999999999999999998 7887 889999999
Q ss_pred hHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccc--ccc---HHHHHHHHHhhhHHHHHh
Q 015897 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWL---EEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 251 Ds~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~--~~~---~~el~~~v~~~~~~ii~~ 325 (398)
|++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+. .|. .+++.+++++++++|++.
T Consensus 152 d~~r~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~ 230 (318)
T 1y6j_A 152 DSIRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKN 230 (318)
T ss_dssp HHHHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHeEE-EEecccCCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhC
Confidence 9999999999999999999997 9999999999999999999999998876542 233 468999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++|+ .|.++++.+++|+ +|+++++++|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 231 kg~t~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~G-~yg~-~~~~~~vP~~ig~~Gv--~~i~~~~L~~ 295 (318)
T 1y6j_A 231 KGATYYG-IAVSINTIVETLL--KNQNTIRTVGTVING-MYGI-EDVAISLPSIVNSEGV--QEVLQFNLTP 295 (318)
T ss_dssp TSCCCHH-HHHHHHHHHHHHH--HTCCCEECCEEEECS-BTTB-CSEEEECCEEEETTEE--EECCCCCCCH
T ss_pred CCccHHH-HHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-cceEEEEEEEEcCCee--EEEecCCCCH
Confidence 9998775 5777777777777 689999999999999 7999 9999999999999999 7888888874
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-59 Score=455.44 Aligned_cols=278 Identities=21% Similarity=0.342 Sum_probs=247.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc--ceEEEecCcccccCCCcE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dADi 175 (398)
||+|||| |+||+++++.|+.+++ ++ +.| + |++++++++.++||.|+..... .+++.+ +++++++|||+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l-~e---l~L--~--Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY-DD---LLL--I--ARTPGKPQGEALDLAHAAAELGVDIRISGS-NSYEDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC-SC---EEE--E--CSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCGGGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC-CE---EEE--E--cCChhhHHHHHHHHHHhhhhcCCCeEEEEC-CCHHHhCCCCE
Confidence 7999996 9999999999999887 53 655 4 6677899999999999753222 234433 56899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~R 254 (398)
||+++|.||+||++|.|++.+|++++++++++++++ +|+||+|++|||+|++|++++|++ ++|+ |+||+||.||++|
T Consensus 71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~LD~~R 148 (308)
T 2d4a_B 71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITTNPVDAMTYVMYKKT-GFPRERVIGFSGILDSAR 148 (308)
T ss_dssp EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHHH
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHHHhc-CCChhhEEEecccchHHH
Confidence 999999999999999999999999999999999999 699999999999999999999996 7887 8899999999999
Q ss_pred HHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcC-CCcHHH
Q 015897 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWG-RSSAAS 333 (398)
Q Consensus 255 l~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G-~t~~~s 333 (398)
++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.+++++++++|++.+| .+.| +
T Consensus 149 ~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~eii~~kg~s~~~-~ 224 (308)
T 2d4a_B 149 MAYYISQKLGVSFKSVNA-IVLGMHGQKMFPVPRLSSVGGVPLEHLMSKEE--IEEVVSETVNAGAKITELRGYSSNY-G 224 (308)
T ss_dssp HHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHSCHHH--HHHHHHHHHTHHHHHHHHHSSCCCH-H
T ss_pred HHHHHHHHhCcChhHeEE-EEEeccCCceeeeehhccCCCEEHHHHcCHHH--HHHHHHHHHHhhHhhhhCCCCccHH-H
Confidence 999999999999999996 89999999999999999999999998876544 47899999999999999999 6655 4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 334 ~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++.+++|+ +|+++++++|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 225 ~a~a~~~~~~ai~--~~~~~v~~vs~~~~G-~yg~-~~~~~~vP~~ig~~Gv--~~i~~~~L~~ 282 (308)
T 2d4a_B 225 PAAGLVLTVEAIK--RDSKRIYPYSLYLQG-EYGY-NDIVAEVPAVIGKSGI--ERIIELPLTE 282 (308)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HHHHHHHHHHHHH--hCCCcEEEEEEEEcC-ccCC-CceEEEEEEEEcCCce--EEecCCCCCH
Confidence 6777777777777 789999999999999 7999 8999999999999999 7888888874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=446.77 Aligned_cols=284 Identities=21% Similarity=0.310 Sum_probs=254.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (398)
+++||+|||| |.||+++++.|+..+++++ |.| + |++++++++.++||.|.. ++. .+++++++++++++||
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~e---v~l--~--Di~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~~~al~~a 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADE---IVL--I--DANESKAIGDAMDFNHGK-VFAPKPVDIWHGDYDDCRDA 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHHHT-TSSSSCCEEEECCGGGTTTC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE--E--eCCcchHHHHHhhHHHHh-hhcCCCeEEEcCcHHHhCCC
Confidence 4679999996 9999999999999887653 554 4 667789999999999976 443 3566667889999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||++++.+++||++|.|++.+|++++++++++++++ +|++|+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 76 DvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~tNPv~~~~~~~~~~s-~~p~~rviG~gt~lD~ 153 (316)
T 1ldn_A 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFS-GLPHERVIGSGTILDT 153 (316)
T ss_dssp SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeCCchHHHHHHHHHHh-CCCHHHEEecccchHH
Confidence 99999999999999999999999999999999999999 699999999999999999999998 7887 78999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc-cc---HHHHHHHHHhhhHHHHHhcCC
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WL---EEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~-~~---~~el~~~v~~~~~~ii~~~G~ 328 (398)
+|++++||+++|+++++|+. |||||||++++|+||+++++|+|+.+++.+.. |. .+++.+++++++++|++.+|.
T Consensus 154 ~r~~~~la~~l~v~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~ 232 (316)
T 1ldn_A 154 ARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGA 232 (316)
T ss_dssp HHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEecccCCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhccCC
Confidence 99999999999999999997 99999999999999999999999998876543 33 268889999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|+ .|.++++.+++|+ +|++++++++++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 233 ~~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~yg~-~~~~~~vP~~ig~~Gv--~~i~~~~l~~ 294 (316)
T 1ldn_A 233 TYYG-IAMGLARVTRAIL--HNENAILTVSAYLDG-LYGE-RDVYIGVPAVINRNGI--REVIEIELND 294 (316)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-TTSC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred cHHH-HHHHHHHHHHHHH--hCCCcEEEEEEEecC-ccCC-cceEEEEEEEEeCCee--EEEccCCCCH
Confidence 8774 5567777777777 789999999999999 7999 8999999999999999 8889998874
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-57 Score=443.24 Aligned_cols=281 Identities=19% Similarity=0.282 Sum_probs=251.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|+||+|+||+++++.|+.++++.+ +. |+|+..+++++++.++||.|... +..++.++.+++++++|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~e---l~--L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV 74 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADE---VV--FVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSE---EE--EECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EE--EEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence 5999999889999999999999887542 44 45442277889999999999874 555666666789999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl 255 (398)
|+++|.|++||++|.|++.+|++++++++++++++ +|++||+++|||+|++|++++|++ ++|+ |+||+||.||++|+
T Consensus 75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv~~~~~~~~~~~-~~p~~rviG~gt~Ld~~r~ 152 (303)
T 1o6z_A 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLYEAG-DRSREQVIGFGGRLDSARF 152 (303)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHHHHHHHHHHHS-SSCGGGEEECCHHHHHHHH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHHHHc-CCCHHHeeecccchhHHHH
Confidence 99999999999999999999999999999999998 799999999999999999999998 7887 88999999999999
Q ss_pred HHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHHHHH
Q 015897 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (398)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~s~A 335 (398)
+++||+++|+++++|+. +||||||++++|+||+++++|.| +++.++. .+++.+++++++++|++.+|.++| ++|
T Consensus 153 ~~~la~~l~v~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~p--~~~~~~~--~~~~~~~v~~~g~eii~~kg~~~~-~~a 226 (303)
T 1o6z_A 153 RYVLSEEFDAPVQNVEG-TILGEHGDAQVPVFSKVSVDGTD--PEFSGDE--KEQLLGDLQESAMDVIERKGATEW-GPA 226 (303)
T ss_dssp HHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTBC--CCCCHHH--HHHHHHHHHHHHHHHHTTTSSCCH-HHH
T ss_pred HHHHHHHhCcCHHHeEE-EEEeCCCCccccCCcccccCCcC--ccCCHHH--HHHHHHHHHHHhHHHHhcCCChHH-HHH
Confidence 99999999999999995 99999999999999999999999 6665443 478999999999999999998887 477
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 336 ~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.++++.+++|+ +|++++++++++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 227 ~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~~P~~ig~~Gv--~~i~~~~l~~ 282 (303)
T 1o6z_A 227 RGVAHMVEAIL--HDTGEVLPASVKLEG-EFGH-EDTAFGVPVSLGSNGV--EEIVEWDLDD 282 (303)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HHHHHHHHHHH--hCCCCEEEEEEecCC-ccCC-cceEEEEEEEEeCCee--EEecCCCCCH
Confidence 78888888888 789999999999999 7999 8999999999999999 8888898874
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=457.42 Aligned_cols=269 Identities=17% Similarity=0.213 Sum_probs=238.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CCCcceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~d 172 (398)
++.+||+|||| |.||+++++.|+.++++++ +.| + |+++++++|.++||+|+. ++....+.. +++|++++|
T Consensus 19 ~~~~kV~ViGa-G~vG~~~a~~la~~g~~~e---v~L--~--Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d~~~~~d 89 (330)
T 3ldh_A 19 RSYNKITVVGC-DAVGMADAISVLMKDLADE---VAL--V--DVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKDYSVSAG 89 (330)
T ss_dssp CCCCEEEEEST-THHHHHHHHHHHHHCCCSE---EEE--E--CSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESSSCSCSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE--E--ECCHHHHHHHHHHhhhhhhcccCCeEEE-cCCHHHhCC
Confidence 35689999996 9999999999999998763 554 4 678899999999999984 222234433 467889999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||+++|.||+|||+|+|++.+|++|++++++++.++ +|++|+|++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 90 aDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvdi~t~~~~k~s-g~p~~rViG~gt~LD 167 (330)
T 3ldh_A 90 SKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLS-GLPMHRIIGSGCNLD 167 (330)
T ss_dssp CSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEECCTTHHH
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccHHHHHHHHHHh-CCCHHHeecccCchh
Confidence 999999999999999999999999999999999999999 799999999999999999999998 7887 7899999999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcH
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~ 331 (398)
++|++++||+++|+++++|++ +||||||++|||+||+ +| .+++.++++++|++|++.||.++|
T Consensus 168 s~R~~~~lA~~lgv~~~~V~~-~V~G~Hg~t~vp~~S~---------------~~-~~~~~~~v~~~g~eii~~kg~t~~ 230 (330)
T 3ldh_A 168 SARFRYLMGERLGVHSCLVIG-WVIGQHGDSVPSVWSG---------------MW-DAKLHKDVVDSAYEVIKLKGYTSW 230 (330)
T ss_dssp HHHHHHHHHHHHTSCTTTCCE-EECSSSSTTCCEEEEE---------------EE-ETTEEHHHHHCCCTTSTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHeEE-EEEcCCCCceeeechh---------------hH-HHHHHHHHHHHHHHHHHccCCcce
Confidence 999999999999999999997 8999999999999998 12 246788999999999999998877
Q ss_pred HHHHH-----------------HHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeE--eec
Q 015897 332 ASTAV-----------------SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCRE--MVI 392 (398)
Q Consensus 332 ~s~A~-----------------~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~--i~~ 392 (398)
+ +|. ++++++++++ .|++.|+|+|++++| +||+++|+|||+||++| +|+ ++ +++
T Consensus 231 a-~a~~~~~~~~~~~~~~~~~~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~~~v~~s~P~~lg-~Gv--~~~~iv~ 303 (330)
T 3ldh_A 231 A-IGLVVSNPVDVLTYVAWKGCSVADLAQTIM--KDLCRVHPVSTMVKD-FYGIKDNVFLSLPCVLN-NGI--SHCNIVK 303 (330)
T ss_dssp H-HHHTTHHHHTTSSSCSCTHHHHHHHHHHHH--HTCCEEECCBCCCSS-SSSCCSCCCCBCCEEEB-TTB--CTTCCCC
T ss_pred e-eeeeccCccchhhhhhhHHHHHHHHHHHHH--cCCCceEEEEeecCC-ccCCCCceEEEEEEEEC-CcE--EEcceec
Confidence 4 455 6666666667 689999999999999 79998899999999999 999 88 999
Q ss_pred cCCCC
Q 015897 393 MNLSR 397 (398)
Q Consensus 393 l~L~~ 397 (398)
++|++
T Consensus 304 ~~L~~ 308 (330)
T 3ldh_A 304 MKLKP 308 (330)
T ss_dssp CCCCH
T ss_pred CCCCH
Confidence 99975
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=440.09 Aligned_cols=279 Identities=24% Similarity=0.353 Sum_probs=238.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~dAD 174 (398)
+||+|||| |+||+++++.|+..++++ +. |+ |++++++++.++||.|..... ..+++.+ +++++++|||
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~----v~--L~--Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGD----IV--LL--DIVEGVPQGKALDLYEASPIEGFDVRVTGT-NNYADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSE----EE--EE--CSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SCGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCe----EE--EE--eCCccHHHHHHHhHHHhHhhcCCCeEEEEC-CCHHHHCCCC
Confidence 69999996 999999999999988642 44 45 566789999999999975222 2234443 4579999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+++|.|++||++|.|++.+|+++++++++.++++ +|++|+|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tNPv~~~t~~~~~~~-~~~~~rviG~gt~LD~~ 150 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAA 150 (309)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCCchHHHHHHHHHHc-CCCHHHEEECCcchHHH
Confidence 9999999999999999999999999999999999999 599999999999999999999996 7887 899999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHH--hcCCCcH
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--KWGRSSA 331 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~--~~G~t~~ 331 (398)
|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.+++++++++|++ ++|.+.|
T Consensus 151 r~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~eii~~~~kgs~~~ 227 (309)
T 1ur5_A 151 RYRTFIAMEAGVSVEDVQA-MLMGGHGDEMVPLPRFSCISGIPVSEFIAPDR--LAQIVERTRKGGGEIVNLLKTGSAYY 227 (309)
T ss_dssp HHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSCHHH--HHHHHHHHHTHHHHHHHHHSSCCCCH
T ss_pred HHHHHHHHHhCCChhheeE-EEecCcCCceeeeeecceeCCEeHHHHcCHhH--HHHHHHHHHhhhHHhhhhccCCCcHH
Confidence 9999999999999999996 99999999999999999999999988875544 47899999999999999 7887655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|.++++.+++|+ +|+++++++|++++| +||+ +|++||+||++|++|+ +++++++|++
T Consensus 228 -~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~vP~~ig~~Gv--~~i~~~~l~~ 286 (309)
T 1ur5_A 228 -APAAATAQMVEAVL--KDKKRVMPVAAYLTG-QYGL-NDIYFGVPVILGAGGV--EKILELPLNE 286 (309)
T ss_dssp -HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-ccCC-cceEEEEEEEEeCCce--EEecCCCCCH
Confidence 46777777777777 789999999999999 7999 8999999999999999 8888898874
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-56 Score=434.19 Aligned_cols=271 Identities=25% Similarity=0.294 Sum_probs=229.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE--ecCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (398)
|||+||||+|+||+++++.|..+ ++.. .|+|+| +++ +++|.++||+|.. +...++. ++++|++++||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~-----el~L~D--i~~-~~~G~a~Dl~~~~--~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGS-----ELSLYD--IAP-VTPGVAVDLSHIP--TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTE-----EEEEEC--SST-THHHHHHHHHTSC--SSEEEEEECSSCCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCc-----eEEEEe--cCC-CchhHHHHhhCCC--CCceEEEecCCCcHHHhCCC
Confidence 69999998899999999999887 6543 345554 554 6889999999974 3233433 24789999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHH---HHHHCCCCCC-ceEEecCc
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI---CLKNAPSIPA-KNFHALTR 249 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~---~~k~~~~~~~-kvig~gt~ 249 (398)
|+||+++|.||+|||+|.|++.+|++|+++++++|.++ +|++++|++|||+|++|++ ++|+++.+|+ |+||+| .
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~-~ 148 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-T 148 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECC-H
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEe-c
Confidence 99999999999999999999999999999999999999 6999999999999999999 8899854477 788988 9
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEecc-CCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc--
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW-- 326 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H-g~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~-- 326 (398)
||++|++++||+++|+++++|+. +||||| |++|||+||++ +|.|+. +++ .++|.++++++|++|++.|
T Consensus 149 LD~~R~~~~la~~lgv~~~~v~~-~V~G~Hsg~t~vp~~S~~--~g~~~~----~~~--~~~i~~~v~~~g~eIi~~k~g 219 (312)
T 3hhp_A 149 LDIIRSNTFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFT----EQE--VADLTKRIQNAGTEVVEAKAG 219 (312)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCC-CEEECSSGGGEEECGGGC--TTCCCC----HHH--HHHHHHHHHTHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHhCcChhHcce-eEEeccCCCceeeecccC--CCCCCC----HHH--HHHHHHHHHhhhHHHHhhccC
Confidence 99999999999999999999995 999999 88999999998 787753 233 3789999999999999877
Q ss_pred -CCCcHHHHHHHHHHHHHHh---hcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 327 -GRSSAASTAVSIVDAMKSL---VTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 327 -G~t~~~s~A~~I~~aI~~~---~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
|.+.| ++|.++++.+++| + +|++.++|++ +++| + |. .++|||+||++|++|+ ++++++ +|++
T Consensus 220 ~gst~~-s~a~a~~~~~~ai~~~l--~~~~~v~~~s-~~~g-~-g~-~~v~~s~P~~~g~~Gv--~~v~~~~~L~~ 286 (312)
T 3hhp_A 220 GGSATL-SMGQAAARFGLSLVRAL--QGEQGVVECA-YVEG-D-GQ-YARFFSQPLLLGKNGV--EERKSIGTLSA 286 (312)
T ss_dssp SCCCCH-HHHHHHHHHHHHHHHHH--TTCSSCEEEE-EEEC-C-CS-SCSEEEEEEEEETTEE--EEECCCCCCCH
T ss_pred CCCchh-HHHHHHHHHHHHHHHHc--CCCCceEEEE-EecC-C-CC-cceEEEeEEEEeCCEE--EEEcCCCCCCH
Confidence 65655 4566666665555 5 6888999999 8887 3 54 6789999999999999 899998 8875
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=434.47 Aligned_cols=283 Identities=19% Similarity=0.269 Sum_probs=247.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCcccccC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFE 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~ 171 (398)
++++||+|||| |.+|+++++.|+..++++ |. |+ |++++++++.++|+++..... ..+++.+ +++++++
T Consensus 2 ~~~~kI~VIGa-G~vG~~ia~~la~~g~~~----v~--L~--Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~~al~ 71 (322)
T 1t2d_A 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGD----VV--LF--DIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTYDDLA 71 (322)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCE----EE--EE--CSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCe----EE--EE--eCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCHHHhC
Confidence 45679999996 999999999999988742 44 44 567789999999999874221 2245444 4569999
Q ss_pred CCcEEEEeCCCCCCCCCc-----hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 172 DAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 172 dADiViitag~~rk~g~~-----r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
|||+||+++|.|+++|++ |.|++.+|++++++++++|+++ +|++|+|++|||+|++|+++++.+ ++|+ |+||
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP~~~~t~~~~~~~-g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHHHHHhc-CCChHHEEe
Confidence 999999999999999999 9999999999999999999999 599999999999999999999986 6777 8999
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc----HHHHHHHHHhhhHH
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGL 321 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~----~~el~~~v~~~~~~ 321 (398)
+||.||++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+. |. .+++.+++++++++
T Consensus 150 ~gt~ld~~R~~~~la~~lgv~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~e 227 (322)
T 1t2d_A 150 LGGVLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNK-LISDAELEAIFDRTVNTALE 227 (322)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTT-SSCHHHHHHHHHHHHTHHHH
T ss_pred ccCcccHHHHHHHHHHHhCCCHHHeEE-EEEcCCCCcEEeeHHHceECcEeHHHhcccc-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 8999999999999999999999998876433 32 46788999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 322 LIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 322 ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|++.+|.+.| ++|.++++.+.+|+ +|+++++++|++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 228 ii~~kgs~~~-~~a~a~~~~~~ai~--~~~~~v~~~s~~~~g-~~g~-~~~~~~vP~~ig~~Gv--~~i~~~~l~~ 296 (322)
T 1t2d_A 228 IVNLHASPYV-APAAAIIEMAESYL--KDLKKVLICSTLLEG-QYGH-SDIFGGTPVVLGANGV--EQVIELQLNS 296 (322)
T ss_dssp HHHHTSSCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HHhccCchHH-HHHHHHHHHHHHHH--hCCCCEEEEEEEecC-ccCC-CceEEEEEEEEeCCee--EEeCCCCCCH
Confidence 9999997665 46777777777777 789999999999999 7999 8999999999999999 8888898874
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=433.44 Aligned_cols=282 Identities=24% Similarity=0.440 Sum_probs=240.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecC---cccccCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN---PYELFED 172 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~---~~eal~d 172 (398)
|||+|+||+|+||+++++.|+.++++.+ + .|+|+..+++++++.++||.|.. ++. .++.++.+ .+++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~e---l--~L~Di~~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~l~~al~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKD---L--VLIGREHSINKLEGLREDIYDAL-AGTRSDANIYVESDENLRIIDE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCE---E--EEEECGGGHHHHHHHHHHHHHHH-TTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCE---E--EEEcCCCchhhhHHHHHHHHHhH-HhcCCCeEEEeCCcchHHHhCC
Confidence 5999999889999999999998887542 4 44544227788999999999976 444 34444432 4999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||+++|.|+++|++|.+++.+|++++++++++++++ + ++||+++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv~~~t~~~~k~~-~~p~~rviG~gt~LD 151 (313)
T 1hye_A 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPVDVMTYKALVDS-KFERNQVFGLGTHLD 151 (313)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSHHHHHHHHHHHH-CCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcHHHHHHHHHHhh-CcChhcEEEeCccHH
Confidence 999999999999999999999999999999999999998 6 9999999999999999999996 7887 8899999999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhc--ccccccHHHHHHHHHhhhHHHHHhcCCC
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII--KDHKWLEEGFTETIQKRGGLLIKKWGRS 329 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i--~~~~~~~~el~~~v~~~~~~ii~~~G~t 329 (398)
++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++ .++. .+++.+++++++++|++.+|.+
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~--~~~~~~~v~~~g~eii~~kgs~ 228 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELP--IDEIIEDVKTKGEQIIRLKGGS 228 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGCC--HHHHHHHHHHHTTSCCC-----
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEeeccCCcccceeeccccCCEEHHHHhcCCHHH--HHHHHHHHHhccceeecCCCCc
Confidence 999999999999999999996 9999999999999999999999998874 3332 5789999999999999999966
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 330 ~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.| ++|.++++.+++|+ +|++++++++++++| +| |+ +|++||+||++|++|+ +++++++|++
T Consensus 229 ~~-~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~~g~-~~~~~~~P~~ig~~Gv--~~i~~~~l~~ 290 (313)
T 1hye_A 229 EF-GPAAAILNVVRCIV--NNEKRLLTLSAYVDG-EFDGI-RDVCIGVPVKIGRDGI--EEVVSIELDK 290 (313)
T ss_dssp -C-CHHHHHHHHHHHHH--TTCCEEEEEEEEEES-SSSSC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HH-HHHHHHHHHHHHHH--cCCCeEEEEEEeecc-eecCc-cceEEEEEEEEeCCee--EEecCCCCCH
Confidence 44 35556666666667 789999999999999 79 99 8999999999999999 7888888874
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-54 Score=425.80 Aligned_cols=280 Identities=21% Similarity=0.343 Sum_probs=243.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC--CcceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~eal~dAD 174 (398)
+||+|||| |.+|+++++.|+..++++ +. |+ |++++++++.++|+.|.... ...+++.++ ++++++|||
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~----V~--L~--Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~-d~~al~~aD 84 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGD----VY--MF--DIIEGVPQGKALDLNHCMALIGSPAKIFGEN-NYEYLQNSD 84 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCE----EE--EE--CSSTTHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCe----EE--EE--ECCHHHHHHHHHHHHhHhhccCCCCEEEECC-CHHHHCCCC
Confidence 69999996 999999999999988732 44 44 66788999999999987521 123455544 569999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||+++|.|++||++|.|++.+|++++++++++|.++ +|++++|++|||+|++|+++++.+ ++|+ |+||+||.||++
T Consensus 85 ~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~-~~~~~rviG~~t~Ld~~ 162 (328)
T 2hjr_A 85 VVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVICITNPLDAMVYYFKEKS-GIPANKVCGMSGVLDSA 162 (328)
T ss_dssp EEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHHHHHH
T ss_pred EEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHHHHHHhc-CCChhhEEEeCcHHHHH
Confidence 9999999999999999999999999999999999999 599999999999999999999876 6877 899999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc----HHHHHHHHHhhhHHHHH--hcC
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIK--KWG 327 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~----~~el~~~v~~~~~~ii~--~~G 327 (398)
|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++++ .|. .+++.++++++|++|++ ++|
T Consensus 163 R~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~eii~~~~~g 240 (328)
T 2hjr_A 163 RFRCNLSRALGVKPSDVSA-IVVGGHGDEMIPLTSSVTIGGILLSDFVEQ-GKITHSQINEIIKKTAFGGGEIVELLKTG 240 (328)
T ss_dssp HHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCCCHHHeeE-EEecCCCCceeeeeeeceECCEEHHHHhhc-cCCCHHHHHHHHHHHHhhHHHHHhhhCCC
Confidence 9999999999999999996 899999999999999999999999888654 333 25688889999999999 688
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 328 ~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.+.| ++|.++++.+.+|+ +|+++++++|++++| +||+ +|+|||+||++|++|+ +++.+++|++
T Consensus 241 s~~~-~~a~a~~~i~~ai~--~~~~~v~~~~v~~~G-~~g~-~~~~~~vP~~ig~~Gv--~~i~~~~L~~ 303 (328)
T 2hjr_A 241 SAFY-APAASAVAMAQAYL--KDSKSVLVCSTYLTG-QYNV-NNLFVGVPVVIGKNGI--EDVVIVNLSD 303 (328)
T ss_dssp CCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred chHH-HHHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-CceEEEEEEEEeCCee--EEecCCCCCH
Confidence 7765 36667777777777 789999999999999 7999 8999999999999999 7788888864
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=418.35 Aligned_cols=277 Identities=18% Similarity=0.296 Sum_probs=223.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|||| |.+|+++++.|+..+++++ +.| + |++++++++.++|+.|.. ++....+++.+++++++|||+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~e---V~L--~--D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSE---LVL--V--DRDEDRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSSHHHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCCHHHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence 59999996 9999999999999987653 554 4 667888999999999876 4444455544678999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchhHHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~ 256 (398)
|++++.|++||++|.|++.+|+++++++++.|.++ +|++++|++|||++++++++++.++ +.|+||+||.||++|++
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~~~~~~~~~~~~--~~rviG~gt~Ld~~r~~ 148 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGTVLDSARFR 148 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHHHHHHHHHHHSC--SSCEEECTTHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHhCC--hhcEEeCCcCchHHHHH
Confidence 99999999999999999999999999999999999 6999999999999999999999872 34899999999999999
Q ss_pred HHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc--c---cHHHHHHHHHhhhHHHHHhcCCCcH
Q 015897 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--W---LEEGFTETIQKRGGLLIKKWGRSSA 331 (398)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~--~---~~~el~~~v~~~~~~ii~~~G~t~~ 331 (398)
+++|+++|+++++|+. +||||||+++||+||+++++|+|+.+++.+.. | ..+++.+++++++++|++.+|.++|
T Consensus 149 ~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t~~ 227 (304)
T 2v6b_A 149 HLMAQHAGVDGTHAHG-YVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYY 227 (304)
T ss_dssp HHHHHHHTSCGGGEEC-CEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHhCcCHHHceE-EEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 9999999999999997 99999999999999999999999998865433 4 3468999999999999999998877
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+ +|.++++.+++|+ +|++++++++++++| || +|||+||++|++|+ +++++++|++
T Consensus 228 ~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g--yg----~~~~~P~~ig~~Gv--~~i~~~~l~~ 282 (304)
T 2v6b_A 228 G-IGAALARITEAVL--RDRRAVLTVSAPTPE--YG----VSLSLPRVVGRQGV--LSTLHPKLTG 282 (304)
T ss_dssp H-HHHHHHHHHHHHH--TTCCEEEEEEEEETT--TT----EEEEEEEEEETTEE--EEECCCCCCH
T ss_pred H-HHHHHHHHHHHHH--hCCCcEEEEEEEECC--cC----cEEEEEEEEeCCee--EEEcCCCCCH
Confidence 5 5777788888888 789999999999999 77 89999999999999 8899998874
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-54 Score=423.54 Aligned_cols=286 Identities=23% Similarity=0.327 Sum_probs=246.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC--CcceEEEecCcccc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYEL 169 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~ea 169 (398)
|..+++||+|||| |.+|++++..|+..++++ |. |+ |++++++++.++|+.|.... ...+++.+++..++
T Consensus 5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~----V~--L~--D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea 75 (331)
T 1pzg_A 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELAD----VV--LY--DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 75 (331)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCE----EE--EE--CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhCCCCe----EE--EE--ECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHH
Confidence 4555689999996 999999999999987632 44 44 66778999999999987521 22345555554459
Q ss_pred cCCCcEEEEeCCCCCCCCC-----chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ce
Q 015897 170 FEDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KN 243 (398)
Q Consensus 170 l~dADiViitag~~rk~g~-----~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kv 243 (398)
++|||+||+++|.|+++|+ +|.|++.+|++++++++++|+++ +|++|+|++|||+|++|+++++.+ ++|+ |+
T Consensus 76 ~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tNP~~~~t~~~~~~~-~~~~~rv 153 (331)
T 1pzg_A 76 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLDCMVKVMCEAS-GVPTNMI 153 (331)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGE
T ss_pred hCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCchHHHHHHHHHhc-CCChhcE
Confidence 9999999999999999999 99999999999999999999999 599999999999999999999987 7777 89
Q ss_pred EEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc----HHHHHHHHHhhh
Q 015897 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRG 319 (398)
Q Consensus 244 ig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~----~~el~~~v~~~~ 319 (398)
||+||.||++|++++||+++|+++++|+. +|||+||+++||+||+++++|+|+.+++++ .|. .+++.++++++|
T Consensus 154 iG~gt~LD~~R~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 231 (331)
T 1pzg_A 154 CGMACMLDSGRFRRYVADALSVSPRDVQA-TVIGTHGDCMVPLVRYITVNGYPIQKFIKD-GVVTEKQLEEIAEHTKVSG 231 (331)
T ss_dssp EECCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHHHH
T ss_pred EeccchHHHHHHHHHHHHHhCCCHHHceE-EEecCCCCCEeeeeecceECCEEHHHHhhc-ccCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999996 999999999999999999999999887644 232 356788899999
Q ss_pred HHHHH--hcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 320 GLLIK--KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 320 ~~ii~--~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|++ .+|.+.|+ +|.++++.+++|+ +|+++++++|++++| +||+ +|++||+||+++++|+ +++.+++|++
T Consensus 232 ~eii~~~~kgst~~~-~a~a~~~ii~ai~--~~~~~~~~~~v~~~G-~~g~-~~~~~~vP~~vg~~Gv--~~i~~~~L~~ 304 (331)
T 1pzg_A 232 GEIVRFLGQGSAYYA-PAASAVAMATSFL--NDEKRVIPCSVYCNG-EYGL-KDMFIGLPAVIGGAGI--ERVIELELNE 304 (331)
T ss_dssp HHHHHHHSSSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HHHHHhhcCCCccch-HHHHHHHHHHHHH--hCCCcEEEEEEEecC-ccCC-CceEEEEEEEEeCCee--EEecCCCCCH
Confidence 99999 78877663 5666777777777 789999999999999 7999 8999999999999999 7788888874
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-53 Score=414.65 Aligned_cols=268 Identities=19% Similarity=0.241 Sum_probs=225.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
++++||+|||| |++|+++++.|+..+++++ +. |+ |++++ +.+.++||.|...+ +++.+ +++++++||
T Consensus 12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~e---v~--L~--Di~~~-~~g~a~dl~~~~~~---~i~~t-~d~~~l~~a 78 (303)
T 2i6t_A 12 KTVNKITVVGG-GELGIACTLAISAKGIADR---LV--LL--DLSEG-TKGATMDLEIFNLP---NVEIS-KDLSASAHS 78 (303)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHHTCCSE---EE--EE--CCC------CHHHHHHHTCT---TEEEE-SCGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EE--EE--cCCcc-hHHHHHHHhhhcCC---CeEEe-CCHHHHCCC
Confidence 34689999995 9999999999999998653 55 45 55666 78899999985432 56665 457999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhH
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs 252 (398)
|+||+++|.+ +|||+|+|++.+|++++++++++|+++ +|++|+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 79 D~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sNP~~~~t~~~~~~~-~~p~~rviG~gt~Ld~ 155 (303)
T 2i6t_A 79 KVVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLS-TFPANRVIGIGCNLDS 155 (303)
T ss_dssp SEEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCChHHHHHHHHHHhc-CCCHHHeeCCCCCchH
Confidence 9999999996 899999999999999999999999999 599999999999999999999996 7887 89999999999
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcHH
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~~ 332 (398)
+|++++||+++|+++++|+. +||||||++++|+||+.. + |..+++.+++++++++|++.+|.+.|
T Consensus 156 ~R~~~~la~~lgv~~~~v~~-~v~G~Hg~s~~p~~s~~~-------~------~~~~~~~~~~~~~g~eii~~kGst~~- 220 (303)
T 2i6t_A 156 QRLQYIITNVLKAQTSGKEV-WVIGEQGEDKVLTWSGQE-------E------VVSHTSQVQLSNRAMELLRVKGQRSW- 220 (303)
T ss_dssp HHHHHHHHHTSCCTTGGGGE-EEEBSCSSSCEEEEBCSS-------C------CCCHHHHHHHHHHHHTTSSSCCCCHH-
T ss_pred HHHHHHHHHHcCCChHHeEE-EEecCCCCCccccccccc-------c------ccHHHHHHHHHHHHHHHHHccCchHH-
Confidence 99999999999999999996 999999999999999851 1 33467889999999999999997655
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 333 s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
++|.++++.+.+|+ +|++.+++++++++| +||+|+|+|||+||++|++|+ ++++++ +|++
T Consensus 221 ~~a~a~~~i~~ai~--~~~~~~~~vs~~~~g-~yg~~~~~~~~vP~~ig~~Gv--~~i~~~~~l~~ 281 (303)
T 2i6t_A 221 SVGLSVADMVDSIV--NNKKKVHSVSALAKG-YYDINSEVFLSLPCILGTNGV--SEVIKTTLKED 281 (303)
T ss_dssp HHHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEE--EEECCBCC-CC
T ss_pred hHHHHHHHHHHHHH--cCCCcEEEEEEEeCC-ccCCCCCeEEEEEEEEECCcc--EEecCCCCCCH
Confidence 46777777777777 789999999999999 799999999999999999999 888887 5554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=411.82 Aligned_cols=280 Identities=23% Similarity=0.365 Sum_probs=244.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~dAD 174 (398)
|||+|||| |.+|++++..|+..++.. +|.| + |++++++++.++|+.|..... ..++..+ ++++++++||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~---~V~l--~--D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~~~l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLAR---ELVL--L--DVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDYADTANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS---EEEE--E--CSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE--E--eCChhHHHHHHHhHHhhhhcccCCcEEEEC-CCHHHHCCCC
Confidence 59999996 999999999999876532 3554 4 667788999999988763111 2234444 4567799999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHH
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~ 253 (398)
+||++.+.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++++++++++ ++|+ |+||+||.||++
T Consensus 72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~~~~~~~~~~~~-~~~~~rviG~gt~ld~~ 149 (310)
T 1guz_A 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAA 149 (310)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEECHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcCchHHHHHHHHHhc-CCChHHEEECCCchHHH
Confidence 9999999999999999999999999999999999999 699999999999999999999986 7887 889999999999
Q ss_pred HHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHH--hcCCCcH
Q 015897 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--KWGRSSA 331 (398)
Q Consensus 254 Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~--~~G~t~~ 331 (398)
|+++++|+++|+++++|+. +||||||+++||+||+++++|+|+.+++.++. .+++.+++++++++|++ ++|.+.|
T Consensus 150 r~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~~ii~~~~kgs~~~ 226 (310)
T 1guz_A 150 RFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLPAET--IDKLVERTRNGGAEIVEHLKQGSAFY 226 (310)
T ss_dssp HHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSCHHH--HHHHHHHHHTHHHHHHHHHSSSCCCH
T ss_pred HHHHHHHHHhCCCHHHeEE-EEEcccCCcEeeeeecccCCCEEHHHHCCHHH--HHHHHHHHHHhHHHHHhhcCCCCcHH
Confidence 9999999999999999997 99999999999999999999999998876544 47899999999999999 7887655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++|.++++.+++|+ +|+++|+++|++++| +||+ +|+|||+||++|++|+ +++.+++|++
T Consensus 227 -~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~~P~~ig~~Gv--~~i~~~~l~~ 285 (310)
T 1guz_A 227 -APASSVVEMVESIV--LDRKRVLPCAVGLEG-QYGI-DKTFVGVPVKLGRNGV--EQIYEINLDQ 285 (310)
T ss_dssp -HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-cceEEEEEEEEeCCee--EEEcCCCCCH
Confidence 47777777777777 789999999999999 7999 8999999999999999 8888888874
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=402.63 Aligned_cols=282 Identities=23% Similarity=0.382 Sum_probs=246.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|||| |++|++++..|+..+..+ +|.+ + |++++++++.++|+.+.. ++.....+...+++++++||+|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~---~V~l--~--D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~d~~~~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAR---EMVL--I--DVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCS---EEEE--E--CSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---eEEE--E--eCChHHHHHHHHHHHhhh-hhcCCcEEEeCCHHHhCCCCEE
Confidence 58999996 999999999999988744 2554 3 677888999999988765 3332333332358999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchhHHHH
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl 255 (398)
|++.+.+++||++|.|++.+|+++++++++.|.++ +|++++|++|||++++++++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rviG~~t~ld~~r~ 149 (319)
T 1a5z_A 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKES-GMDPRKVFGSGTVLDTARL 149 (319)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHHHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcHHHHHHHHHHHh-CCChhhEEeeCccHHHHHH
Confidence 99999999999999999999999999999999999 699999999999999999999987 6776 89999999999999
Q ss_pred HHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc-c---cHHHHHHHHHhhhHHHHHhcCCCcH
Q 015897 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-W---LEEGFTETIQKRGGLLIKKWGRSSA 331 (398)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~-~---~~~el~~~v~~~~~~ii~~~G~t~~ 331 (398)
++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.... | ..+++.+.++++++++++.+|.++|
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~ 228 (319)
T 1a5z_A 150 RTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHY 228 (319)
T ss_dssp HHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHhCcCHHHceE-EEEeCCCCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccCCchHH
Confidence 99999999999999996 99999999999999999999999988764322 3 2467889999999999999999887
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+ +|.++++.+.+|+ +|++.+++++++++| .||+ +|+|||+||++|++|+ +++.+++|++
T Consensus 229 ~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~vP~~vg~~Gv--~~i~~~~L~~ 287 (319)
T 1a5z_A 229 A-IALAVADIVESIF--FDEKRVLTLSVYLED-YLGV-KDLCISVPVTLGKHGV--ERILELNLNE 287 (319)
T ss_dssp H-HHHHHHHHHHHHH--TTCCEEEEEEEEESS-BTTB-CSEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred H-HHHHHHHHHHHHH--hCCCCEEEEEEEecC-ccCc-cceEEEEEEEEeCCce--EEEecCCCCH
Confidence 5 5677777777778 789999999999999 7999 9999999999999999 7788888874
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=394.28 Aligned_cols=273 Identities=23% Similarity=0.263 Sum_probs=224.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcc-cccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPY-ELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~-eal~dA 173 (398)
|||+||||+|+||+++++.|+..++.. +|. |+|+ ++ +++.++||.|...+ .+++.+ ++++ ++++||
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~---ev~--L~Di--~~--~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVS---RLT--LYDI--AH--TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCS---EEE--EEES--SS--HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCc---EEE--EEeC--Cc--cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence 599999977999999999999888744 244 4554 43 68899999997633 245543 3355 479999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHH---HHHCCCCCC-ceEEecCc
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPA-KNFHALTR 249 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~---~k~~~~~~~-kvig~gt~ 249 (398)
|+||+++|.|+++|++|.|++.+|+++++++++.|+++ +|++|+|++|||+|++|+++ +++.+++|+ |+||+ |.
T Consensus 70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~-t~ 147 (314)
T 1mld_A 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TT 147 (314)
T ss_dssp SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEEC-CH
T ss_pred CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEe-ec
Confidence 99999999999999999999999999999999999999 69999999999999999533 334457887 78888 99
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEecc-CCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc--
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW-- 326 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H-g~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~-- 326 (398)
||++|++++||+++|++|++|+. +||||| |++++|+||+++ |..+ +.++. .+++.+++++++++|++.+
T Consensus 148 Ld~~r~~~~la~~l~v~~~~v~~-~v~G~H~G~~~~p~~s~~~----~~~~-~~~~~--~~~~~~~v~~~g~eii~~k~~ 219 (314)
T 1mld_A 148 LDIVRANAFVAELKGLDPARVSV-PVIGGHAGKTIIPLISQCT----PKVD-FPQDQ--LSTLTGRIQEAGTEVVKAKAG 219 (314)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCBC-CEEECSSGGGEEECGGGCB----SCCC-CCHHH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhCcChHhEEE-EEccCCCCCcEeeecccCC----Cccc-CCHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999995 999999 799999999998 4444 23332 3789999999999999955
Q ss_pred -CCCcHHHHHHHHHHHHHHhhcCC-CCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 327 -GRSSAASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 327 -G~t~~~s~A~~I~~aI~~~~~~~-~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
|.+.| ++|.++++.+++|+.+. +++.++++ ++++| +| ++|+|||+||++|++|+ ++++++ +|++
T Consensus 220 ~g~t~~-~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g-~y--~~~~~~~~P~~ig~~Gv--~~i~~l~~l~~ 286 (314)
T 1mld_A 220 AGSATL-SMAYAGARFVFSLVDAMNGKEGVVEC-SFVKS-QE--TDCPYFSTPLLLGKKGI--EKNLGIGKISP 286 (314)
T ss_dssp SCSCCH-HHHHHHHHHHHHHHHHHHTCTTCEEE-EEEEC-CS--SSSSEEEEEEEEETTEE--EEECCCCSCCH
T ss_pred CCCcch-hHHHHHHHHHHHHHcCcCCCcceEEE-EEeCC-cc--CCceEEEEEEEEeCCee--EEecCCCCCCH
Confidence 54444 46777777777777321 14579999 79999 68 68999999999999999 778888 8764
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=388.18 Aligned_cols=274 Identities=20% Similarity=0.224 Sum_probs=227.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE---ecCccccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELF 170 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i---~~~~~eal 170 (398)
++++||+||||+|+||+++++.|+..+++. +|. |+| ++++ ++.++||.|...+ ..+.. +++.++++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~---ev~--l~D--i~~~--~~~~~dL~~~~~~--~~v~~~~~t~d~~~al 74 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVS---VLH--LYD--VVNA--PGVTADISHMDTG--AVVRGFLGQQQLEAAL 74 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEE---EEE--EEE--SSSH--HHHHHHHHTSCSS--CEEEEEESHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCC---EEE--EEe--CCCc--HhHHHHhhccccc--ceEEEEeCCCCHHHHc
Confidence 456899999988999999999998877543 244 454 4444 7889999986532 23333 22446889
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh----HHHHHHHHCCCCCC-ceEE
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~~~~~~~-kvig 245 (398)
+|||+||+++|.|+++|++|.|++.+|+++++++++++.++ +|+++|+++|||+|+ +++++++.+ ++|+ |+||
T Consensus 75 ~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SNPv~~~~~~~t~~~~~~~-~~p~~rviG 152 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPVNSTVPIAAEVFKKAG-TYDPKRLLG 152 (326)
T ss_dssp TTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHHHHT-CCCTTSEEE
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCchHHHHHHHHHHHHHcc-CCCcccEEE
Confidence 99999999999999999999999999999999999999998 699999999999999 555567776 7887 7889
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEecc-CCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHH
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK 324 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H-g~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~ 324 (398)
+ |.||++|++++||+++|+++++|+. +||||| |++++|+||++++.+. +.++. .+++.+++++++++|++
T Consensus 153 ~-~~Ld~~r~~~~la~~l~v~~~~v~~-~v~G~H~G~~~~p~~s~~~v~~~-----~~~~~--~~~~~~~v~~~g~eii~ 223 (326)
T 1smk_A 153 V-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPSS-----FTQEE--ISYLTDRIQNGGTEVVE 223 (326)
T ss_dssp C-CHHHHHHHHHHHHHHHTCCGGGCBC-CEEECSSGGGEEECGGGCBSCCC-----CCHHH--HHHHHHHHHHHHHHHHH
T ss_pred E-eehHHHHHHHHHHHHhCcChhheEE-EEecccCCceEEEecccCeecCc-----CCHHH--HHHHHHHHHHHHHHHHh
Confidence 9 9999999999999999999999995 999999 9999999999987532 22222 36899999999999999
Q ss_pred hc---CCCcH--HHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 325 KW---GRSSA--ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 325 ~~---G~t~~--~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
.| |.+.| +.++..++++|..|+ +|++++++++ +++| + +|+|+|||+||+++++|+ +++++ ++|++
T Consensus 224 ~k~~~gs~~~~~a~a~~~~~~ai~~~~--~~~~~v~~~~-~~~g-~--~~~~~~~~vP~~ig~~Gv--~~i~~~~~L~~ 294 (326)
T 1smk_A 224 AKAGAGSATLSMAYAAVKFADACLRGL--RGDAGVIECA-FVSS-Q--VTELPFFASKVRLGRNGI--EEVYSLGPLNE 294 (326)
T ss_dssp HTTTSCCCCHHHHHHHHHHHHHHHHHH--HTCSCEEEEE-EEEC-C--SSSSSEEEEEEEEETTEE--EEECCCCCCCH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHh--CCCCeEEEEE-eecc-c--cCCceEEEEEEEEeCCee--EEEcCCCCCCH
Confidence 76 66656 566777777787777 6889999998 7888 4 568999999999999999 88888 88864
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=380.63 Aligned_cols=297 Identities=49% Similarity=0.812 Sum_probs=256.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
|++++||+|+||+|+||+++++.|+..+.++.+++..++++|++.+.+++++.++||.|..+++..++....+.++++++
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~ 80 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC
Confidence 34567999999889999999999999887643222345556544334678889999998754555566666677899999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcC-CCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS-RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~-p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lD 251 (398)
+|+||+++|.++++|++|.+++..|+++++++++.++++ + |+++++++|||+|.++++.++.++++++..+.+.|.+|
T Consensus 81 ~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~-~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~ 159 (327)
T 1y7t_A 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV-AKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLD 159 (327)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-SCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHH
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHH
Confidence 999999999999999999999999999999999999998 5 89999999999999999988876467776667779999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCCCcH
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~t~~ 331 (398)
+.|+.+.+++++|+++..|+..+|||+||++++|+|+++.++|+|+.+++.+ +|..+++.++++++|++|++.||.++|
T Consensus 160 ~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~v~~~g~~ii~~kg~~~~ 238 (327)
T 1y7t_A 160 HNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM-EWYEKVFIPTVAQRGAAIIQARGASSA 238 (327)
T ss_dssp HHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH-HHHHHTHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc-hhHHHHHHHHHHHHHHHHHHccCCCch
Confidence 9999999999999999999976899999999999999999999999887643 465689999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec-cCCCC
Q 015897 332 ASTAVSIVDAMKSLVTPTP--EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MNLSR 397 (398)
Q Consensus 332 ~s~A~~I~~aI~~~~~~~~--~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~L~~ 397 (398)
+++|.++++.+++|+ +| +++++++|++++| +||+|+|+|||+||++ ++|+ +++++ ++|++
T Consensus 239 ~~~a~a~~~~~~~i~--~~~~~~~~~~~~~~~~g-~yg~~~~~~~~~P~~i-~~G~--~~i~~~~~l~~ 301 (327)
T 1y7t_A 239 ASAANAAIEHIRDWA--LGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTA-KDGA--YRVVEGLEINE 301 (327)
T ss_dssp HHHHHHHHHHHHHHH--TBCCTTCCEEEEEECSS-GGGCCTTSEEEEEEEE-ETTE--EEECCCCCCCH
T ss_pred HHHHHHHHHHHHHHH--cCCCCCeEEEEEEEecC-ccCCCCCeEEEEEEEE-cCCe--EEecCCCCCCH
Confidence 877788888888888 55 7899999999999 6999999999999999 8999 88877 88874
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=377.66 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=240.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC--CCcceEEEecCccccc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELF 170 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal 170 (398)
|++++||+|||| |.+|+.++..|+..++. .+. |+ |++++++++.++|+.+... ....++..++ +++++
T Consensus 1 M~~~~kI~VIGa-G~~G~~ia~~la~~g~~----~V~--l~--D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~-d~~a~ 70 (317)
T 2ewd_A 1 MIERRKIAVIGS-GQIGGNIAYIVGKDNLA----DVV--LF--DIAEGIPQGKALDITHSMVMFGSTSKVIGTD-DYADI 70 (317)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEE--EE--CSSSSHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGG
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCc----eEE--EE--eCCchHHHHHHHHHHhhhhhcCCCcEEEECC-CHHHh
Confidence 345679999996 99999999999998763 144 44 5677888888888887631 1123455544 45999
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCc
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~ 249 (398)
++||+||++.|.|++||++|.|++.+|.+++++++++|.++ +|++++|++|||++++++.+++.+ ++|+ |+||+||.
T Consensus 71 ~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~sNp~~~~~~~~~~~~-~~~~~rviG~~t~ 148 (317)
T 2ewd_A 71 SGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDVMVSHFQKVS-GLPHNKVCGMAGV 148 (317)
T ss_dssp TTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHH
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHHHhh-CCCHHHEEeccCc
Confidence 99999999999999999999999999999999999999999 699999999999999999999987 6765 89999999
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc---ccHHHHHHHHHhhhHHHHH--
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK---WLEEGFTETIQKRGGLLIK-- 324 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~---~~~~el~~~v~~~~~~ii~-- 324 (398)
+|+.|+++++|+++|+++.+|++ +|||+||++++|+||+++++|+|+.+++.+.- ...+++.+.++.+++++++
T Consensus 149 ld~~r~~~~la~~lg~~~~~v~~-~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~ 227 (317)
T 2ewd_A 149 LDSSRFRTFIAQHFGVNASDVSA-NVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL 227 (317)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcChhhceE-EEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh
Confidence 99999999999999999999997 89999999999999999999999988765421 1235677777888999988
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 325 ~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.+|.+.|+ .|.++++.+.+|+ +|++++++++++++| +||+ +|+|||+||++|++|+ +++.+++|++
T Consensus 228 g~g~~~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~G-~~g~-~~~~~~~P~~i~~~Gv--~~i~~~~l~~ 293 (317)
T 2ewd_A 228 KTGTAYFA-PAAAAVKMAEAYL--KDKKAVVPCSAFCSN-HYGV-KGIYMGVPTIIGKNGV--EDILELDLTP 293 (317)
T ss_dssp SSSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEESS-STTC-SSEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred cCCchHHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecC-ccCC-cceEEEeEEEEcCCee--EEecCCCCCH
Confidence 46556553 5666666666667 788899999999999 7999 8999999999999999 7788888864
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=371.60 Aligned_cols=278 Identities=17% Similarity=0.206 Sum_probs=233.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+||| +|.+|++++..|+..++.. +|.| + |++++++++.++|+.|.......++.+.+.+++++++||+
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~---~V~l--~--d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDv 72 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVAD---DYVF--I--DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADV 72 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCS---EEEE--E--CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCC---EEEE--E--cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCE
Confidence 47999999 5999999999999988632 3554 3 6778899999999887652111234443345699999999
Q ss_pred EEEeCCCCCC----CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCch
Q 015897 176 ALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (398)
Q Consensus 176 Viitag~~rk----~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~l 250 (398)
||++.+.+++ ||++|+|++.+|+++++++++.+.++ +|++++|++|||+|++++++++.+ ++|+ |+||++|.|
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rvig~gt~l 150 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVT-GFPAHKVIGTGTLL 150 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCcHHHHHHHHHHhc-CCCHHHEeecCccc
Confidence 9999999998 99999999999999999999999998 599999999999999999999885 6777 889999999
Q ss_pred hHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhh--cccccccHHHHHHHHHhhhHHHHHhcCC
Q 015897 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEI--IKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 251 Ds~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~--i~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (398)
|++|+++++|+++++++++|+. ++|||||++++|+||+++++|+|+.++ +.++. .+++.++++++++++++.+|.
T Consensus 151 d~~r~~~~~a~~l~~~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~~~--~~~~~~~v~~~g~~ii~~kg~ 227 (309)
T 1hyh_A 151 DTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID--LAAIEEEARKGGFTVLNGKGY 227 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CC--HHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHhCCChhheEE-EEEeCCCCcEeeccccceECCEEHHHhccCCHHH--HHHHHHHHHHhHHHHHhccCC
Confidence 9999999999999999999996 899999999999999999999999887 33333 368999999999999999998
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+.|+ +|.++++.+.+|+ +|++.+++++++++| +|++||+||+++++|+ +++++++|++
T Consensus 228 ~~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g------~~~~~~vP~~i~~~Gv--~~i~~~~l~~ 285 (309)
T 1hyh_A 228 TSYG-VATSAIRIAKAVM--ADAHAELVVSNRRDD------MGMYLSYPAIIGRDGV--LAETTLDLTT 285 (309)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT------TCSEEEEEEEEETTEE--EEECCCCCCH
T ss_pred chHH-HHHHHHHHHHHHH--cCCCcEEEEEEEECC------CCeEEEEEEEEeCCce--EEEeCCCCCH
Confidence 8663 5666666666667 789999999999998 5789999999999999 7788888874
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=355.45 Aligned_cols=278 Identities=15% Similarity=0.113 Sum_probs=217.9
Q ss_pred CCCEEEEEcCCCch-HHHHHHHHHh--cCc-CCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc
Q 015897 95 KMVNIAVSGAAGMI-ANHLLFKLAA--GEV-LGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~v-G~~la~~L~~--~~~-~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
+++||+|||| |++ +..++..|+. .++ .+ +|+| + |++++++++ ++|+.+.......+++.+++.++++
T Consensus 1 ~~~KI~IIGa-G~v~~~~l~~~l~~~~~~l~~~---el~L--~--Di~~~~~~~-~~~~~~~~~~~~~~v~~t~d~~~al 71 (417)
T 1up7_A 1 RHMRIAVIGG-GSSYTPELVKGLLDISEDVRID---EVIF--Y--DIDEEKQKI-VVDFVKRLVKDRFKVLISDTFEGAV 71 (417)
T ss_dssp CCCEEEEETT-TCTTHHHHHHHHHHHTTTSCCC---EEEE--E--CSCHHHHHH-HHHHHHHHHTTSSEEEECSSHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcccCCCcC---EEEE--E--eCCHHHHHH-HHHHHHHHhhCCeEEEEeCCHHHHh
Confidence 3579999996 775 2223345565 555 33 3554 4 667788886 7888774421113444444446999
Q ss_pred CCCcEEEEeCCCCCCCCCchh-------h-------------hHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 171 EDAEWALLIGAKPRGPGMERA-------G-------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~-------d-------------ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
+|||+||+++|.+++||++|. + ++.+|+++++++++.|+++ | +||+||+|||+|++|+
T Consensus 72 ~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNPvdi~t~ 149 (417)
T 1up7_A 72 VDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNPSGHITE 149 (417)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCChHHHHHH
Confidence 999999999999999988884 2 3689999999999999999 7 9999999999999999
Q ss_pred HHHHHCCCCCC-ceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-----------ccCCCccccccce---EEcC-
Q 015897 231 ICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNA---RING- 294 (398)
Q Consensus 231 ~~~k~~~~~~~-kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-----------~Hg~s~vp~~S~a---~I~G- 294 (398)
+++|.+ |+ |+||+|+.++ |+++.+|+.+|+++++|+. +|+| +||++++|.||.. +++|
T Consensus 150 a~~k~~---p~~rviG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~ 223 (417)
T 1up7_A 150 FVRNYL---EYEKFIGLCNVPI--NFIREIAEMFSARLEDVFL-KYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNI 223 (417)
T ss_dssp HHHHTT---CCSSEEECCSHHH--HHHHHHHHHTTCCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHHTTC---C
T ss_pred HHHHhC---CCCCEEEeCCCHH--HHHHHHHHHhCCCHHHCeE-EEEeecceeeEEEeecCCcEehhhHHHHHHHhhCCC
Confidence 999986 44 8999999975 9999999999999999996 8999 9999999999996 6665
Q ss_pred --ccch-hhccc---------------cc----c----cHHHHHHHHHhhhHHHH----------HhcCCCcHHHHHHHH
Q 015897 295 --LPVK-EIIKD---------------HK----W----LEEGFTETIQKRGGLLI----------KKWGRSSAASTAVSI 338 (398)
Q Consensus 295 --~p~~-~~i~~---------------~~----~----~~~el~~~v~~~~~~ii----------~~~G~t~~~s~A~~I 338 (398)
.|+. ++++. ++ + .+.+..+++++++++++ +++|.+.|+..|..|
T Consensus 224 ~~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t~~~~~a~~i 303 (417)
T 1up7_A 224 PDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHL 303 (417)
T ss_dssp CTTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHHHHHHHH
T ss_pred cCCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCcHHHHHHHHH
Confidence 6762 33221 00 0 01222566777789988 567888888888899
Q ss_pred HHHHHHhhcCCCCCcEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 339 VDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 339 ~~aI~~~~~~~~~~~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+++|. +|++.++++|++++| .| |+|+|+++|+||++|++|+ +++.+.+|++
T Consensus 304 i~AI~-----~d~~~~~~vsv~n~G-~i~~lp~d~~vevP~~vg~~Gi--~~i~~~~L~~ 355 (417)
T 1up7_A 304 IRDLE-----TDEGKIHIVNTRNNG-SIENLPDDYVLEIPCYVRSGRV--HTLSQGKGDH 355 (417)
T ss_dssp HHHHH-----SSSCEEEEEEEECTT-SSTTSCTTCEEEEEEEEETTEE--EEBCCCCCCH
T ss_pred HHHHH-----cCCCeEEEEEEecCC-ccCCCCCCeEEEEeEEEeCCce--EEeecCCCCH
Confidence 88886 899999999999999 68 7999999999999999999 7787777753
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=354.67 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=215.8
Q ss_pred ccCCCEEEEEcCCCch-HHHHHHHHHh--cCc-CCCCCceEEEecccccch--hhHHHHHHHHhhhc---CCCcceEEEe
Q 015897 93 WKKMVNIAVSGAAGMI-ANHLLFKLAA--GEV-LGPDQPIALKLLGSERSL--QALEGVAMELEDSL---FPLLREVKIG 163 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~v-G~~la~~L~~--~~~-~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~---~~~~~~v~i~ 163 (398)
|++++||+|||| |++ |..++..|+. .++ .+ +|. |+ |+++ +++++. .|+.+.. .....+++.+
T Consensus 4 m~~~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~---ev~--L~--Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t 74 (450)
T 1s6y_A 4 MDKRLKIATIGG-GSSYTPELVEGLIKRYHELPVG---ELW--LV--DIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLT 74 (450)
T ss_dssp ---CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEE---EEE--EE--CCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEE
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHHcCCCCCCCC---EEE--EE--EcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEe
Confidence 333579999996 888 7777777887 444 22 254 45 5666 888873 3554432 1223356555
Q ss_pred cCcccccCCCcEEEEeCCCCCCCCCchhhh--------------------HHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 164 INPYELFEDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~rk~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+|.+++++|||+||++++.+++||++|+++ +.+|+++++++++.|+++ ||+||+|++||
T Consensus 75 ~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tN 153 (450)
T 1s6y_A 75 LDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTN 153 (450)
T ss_dssp SCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSS
T ss_pred CCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 555699999999999999999999888744 899999999999999999 69999999999
Q ss_pred CchhHHHHHHHHCCCCCC-ceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-----------ccCCCccccccceE
Q 015897 224 PCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNAR 291 (398)
Q Consensus 224 P~d~~t~~~~k~~~~~~~-kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-----------~Hg~s~vp~~S~a~ 291 (398)
|+|++|++++|.+ |+ |+||+|+.++ |+++.||+.+|+++++|+. +|+| +||++++|.|+...
T Consensus 154 PvdivT~a~~k~~---p~~rViG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~v~~~G~d~~p~~~~~~ 227 (450)
T 1s6y_A 154 PAGMVTEAVLRYT---KQEKVVGLCNVPI--GMRMGVAKLLGVDADRVHI-DFAGLNHMVFGLHVYLDGVEVTEKVIDLV 227 (450)
T ss_dssp SHHHHHHHHHHHC---CCCCEEECCSHHH--HHHHHHHHHHTSCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHH
T ss_pred cHHHHHHHHHHhC---CCCCEEEeCCcHH--HHHHHHHHHhCCCHHHcEE-EEEeeecceeEEEeeeCCcCchHhHHHHH
Confidence 9999999999997 44 8999999974 9999999999999999996 8999 88999999998754
Q ss_pred Ec----C--------ccch-hhc---------------c-ccc---c--------cHHHHHHHHHhhhHHHH-----Hh-
Q 015897 292 IN----G--------LPVK-EII---------------K-DHK---W--------LEEGFTETIQKRGGLLI-----KK- 325 (398)
Q Consensus 292 I~----G--------~p~~-~~i---------------~-~~~---~--------~~~el~~~v~~~~~~ii-----~~- 325 (398)
++ | .|+. +++ . ++. | .+.++.+++++++++++ ..
T Consensus 228 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k 307 (450)
T 1s6y_A 228 AHPDRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIK 307 (450)
T ss_dssp SCC------------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----
T ss_pred hhhccccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccc
Confidence 43 2 2331 111 0 110 0 12355667777888887 32
Q ss_pred ------cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 ------WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ------~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.+.++..|..|+++|. +|++.++++|++++| .| |+|+|+++|+||++|++|+ +++.+.+|++
T Consensus 308 ~~~~~~~~~~~~~~~a~~ii~AI~-----~d~~~~~~vsv~n~G-~i~~lp~d~~vevP~vvg~~Gi--~~i~~~~L~~ 378 (450)
T 1s6y_A 308 PPQLEKRGGAYYSDAACSLISSIY-----NDKRDIQPVNTRNNG-AIASISAESAVEVNCVITKDGP--KPIAVGDLPV 378 (450)
T ss_dssp ------CCSCCHHHHHHHHHHHHH-----HTCCCEEEEEEECTT-SBTTSCTTSEEEEEEEEETTEE--EECCCBCCCH
T ss_pred cchhhcccchHHHHHHHHHHHHHH-----cCCCeEEEEEeecCc-eecCCCCCeEEEEeEEEcCCCe--EEeecCCCCH
Confidence 444456778888888886 799999999999999 57 7999999999999999999 7788777753
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=324.93 Aligned_cols=285 Identities=21% Similarity=0.300 Sum_probs=240.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~d 172 (398)
++++||+|||| |.+|+.++..|+..+.++ +|.| + |++++++++.++|+.+.. ++.....+. +.+++++++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~---~V~l--~--d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 75 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAR---EIVL--E--DIAKERVEAEVLDMQHGS-SFYPTVSIDGSDDPEICRD 75 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCS---EEEE--E--CSSHHHHHHHHHHHHHTG-GGSTTCEEEEESCGGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE--E--eCChhHHHHHHHHHHhhh-hhcCCeEEEeCCCHHHhCC
Confidence 34679999996 999999999999988654 2554 3 677788888888887765 332222332 235789999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCchh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~lD 251 (398)
||+||++.+.+++||++|.|++.+|+++++++++.+.++ +|+++||+++||++.+++++++.+ ++|+ ++||++|.+|
T Consensus 76 aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~-~~~~~~vig~~~~l~ 153 (319)
T 1lld_A 76 ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLT-GLPENQIFGSGTNLD 153 (319)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-TCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhc-CCCHHHEeeccccHh
Confidence 999999999999999999999999999999999999998 799999999999999999998875 6776 7899999999
Q ss_pred HHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc------HHHHHHHHHhhhHHHHHh
Q 015897 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL------EEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 252 s~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~------~~el~~~v~~~~~~ii~~ 325 (398)
+.|++..+++++++++.+++. ++||+||++++|+|+++.++|.|+.+++....|. .+++.+.+++++++|++.
T Consensus 154 ~~r~~~~~a~~~~v~~~~v~~-~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~ 232 (319)
T 1lld_A 154 SARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING 232 (319)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCHHHeEE-EEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC
Confidence 999999999999999999997 8899999999999999999999998775432221 357888899999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.+.++ .+....+++++|+ .+++.++++|++++| .|+. .+.++|+||.++++|+ +++++++|++
T Consensus 233 ~G~~~~~-~a~~~~sm~~di~--~~~~~ei~~s~~~~G-~~~~-~~~~~gvp~~~~~~Gv--~~i~~~~l~~ 297 (319)
T 1lld_A 233 KGATNYA-IGMSGVDIIEAVL--HDTNRILPVSSMLKD-FHGI-SDICMSVPTLLNRQGV--NNTINTPVSD 297 (319)
T ss_dssp CCSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECSS-BTTB-CSSEEEEEEEEETTEE--ECCSCCCCCH
T ss_pred CCCchHH-HHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCc-cceEEEEEEEEeCCee--EEEcCCCCCH
Confidence 9987654 4556666677767 678999999999999 7998 8999999999999999 7788888874
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=345.05 Aligned_cols=282 Identities=13% Similarity=0.115 Sum_probs=209.6
Q ss_pred hccCCCEEEEEcCCCch-HHHHHHHHHhc--Cc-CCCCCceEEEecccccchhhHHHHHHHHhhhc---CCCcceEEEec
Q 015897 92 SWKKMVNIAVSGAAGMI-ANHLLFKLAAG--EV-LGPDQPIALKLLGSERSLQALEGVAMELEDSL---FPLLREVKIGI 164 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~v-G~~la~~L~~~--~~-~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~---~~~~~~v~i~~ 164 (398)
|+++++||+|||| |++ |..++..|+.+ ++ .. +|.| + |++++++++. .|+.+.. .....+++.++
T Consensus 24 m~m~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~---eV~L--~--Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~ 94 (472)
T 1u8x_X 24 MKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIR---KLKL--Y--DNDKERQDRI-AGACDVFIREKAPDIEFAATT 94 (472)
T ss_dssp --CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEE---EEEE--E--CSCHHHHHHH-HHHHHHHHHHHCTTSEEEEES
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCC---EEEE--E--eCCHHHHHHH-HHHHHHHhccCCCCCEEEEEC
Confidence 4333569999996 887 55578888887 55 22 2554 4 6777888874 4666532 12334566666
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchh--------------------hhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERA--------------------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~--------------------dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|.+++++|||+||++++.++++|++|. +++.+|+++++++++.|+++ ||+||+|++|||
T Consensus 95 D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNP 173 (472)
T 1u8x_X 95 DPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNP 173 (472)
T ss_dssp CHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSC
T ss_pred CHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 656999999999999999988888884 44899999999999999999 699999999999
Q ss_pred chhHHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCc-CceeeEEEEe-----------c-cCCCccccccceE
Q 015897 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-----------N-HSTTQVPDFLNAR 291 (398)
Q Consensus 225 ~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~-~~V~~v~V~G-----------~-Hg~s~vp~~S~a~ 291 (398)
+|++|++++|.+|. .|+||+|+.++ |+++.||+.+|+++ ++|+. +|+| + ||++++|.||...
T Consensus 174 vdi~T~~~~k~~p~--~rViG~c~~~~--r~~~~la~~lgv~~~~~v~~-~v~GlNH~~W~~~~~~~hG~d~~p~~~~~~ 248 (472)
T 1u8x_X 174 AAIVAEATRRLRPN--SKILNICDMPV--GIEDRMAQILGLSSRKEMKV-RYYGLNHFGWWTSIQDQEGNDLMPKLKEHV 248 (472)
T ss_dssp HHHHHHHHHHHSTT--CCEEECCSHHH--HHHHHHHHHHTCSCGGGEEE-EEEEETTEEEEEEEEETTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCEEEeCCcHH--HHHHHHHHHhCcCchhceeE-EEeccchhhheeeeEeCCCCEehHhHHHHH
Confidence 99999999999732 28999999975 99999999999997 99996 8999 8 9999999999865
Q ss_pred E-cC-c----------cch-hhccc------------cc---c--cHHHHHHH----------HHh----hhHHHHH-h-
Q 015897 292 I-NG-L----------PVK-EIIKD------------HK---W--LEEGFTET----------IQK----RGGLLIK-K- 325 (398)
Q Consensus 292 I-~G-~----------p~~-~~i~~------------~~---~--~~~el~~~----------v~~----~~~~ii~-~- 325 (398)
+ +| . |+. ++++. .. | ..+++.++ +++ ..+++++ .
T Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~ 328 (472)
T 1u8x_X 249 SQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMIT 328 (472)
T ss_dssp HHHSSCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHH
T ss_pred HhcCCCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 33 1 111 12110 00 1 01222222 222 2233333 2
Q ss_pred -cC---CC-----cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccC-CCCCceEEEEeEEEcCCCceeeEeeccCC
Q 015897 326 -WG---RS-----SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKKVTSVCREMVIMNL 395 (398)
Q Consensus 326 -~G---~t-----~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~y-gip~dv~~svP~~ig~~Gv~~~~i~~l~L 395 (398)
+| .+ .++..|+.|+++|. +|++.++++||+++| .| |+|+|+++|+||++|++|+ +++...+|
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~~ii~AI~-----~d~~~v~~vsv~n~G-~i~glp~d~~veVP~vvg~~Gi--~pi~~~~L 400 (472)
T 1u8x_X 329 REQSSENSEIKIDDHASYIVDLARAIA-----YNTGERMLLIVENNG-AIANFDPTAMVEVPCIVGSNGP--EPITVGTI 400 (472)
T ss_dssp HHTSCCSCSSCCCTTTHHHHHHHHHHH-----HTCCEEEEEEEECTT-SBTTSCTTSEEEEEEEEETTEE--EECCCBCC
T ss_pred hcCCcccccccccHHHHHHHHHHHHHh-----cCCCeEEEEEeecCc-eecCcCCCeEEEEeEEEcCCCc--eEeecCCC
Confidence 45 22 23567788888776 799999999999999 56 7999999999999999999 77777776
Q ss_pred C
Q 015897 396 S 396 (398)
Q Consensus 396 ~ 396 (398)
.
T Consensus 401 p 401 (472)
T 1u8x_X 401 P 401 (472)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=289.86 Aligned_cols=275 Identities=16% Similarity=0.177 Sum_probs=196.9
Q ss_pred CCEEEEEcCCCchH--HHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhc--CCCcceEEEecCccccc
Q 015897 96 MVNIAVSGAAGMIA--NHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL--FPLLREVKIGINPYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG--~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~--~~~~~~v~i~~~~~eal 170 (398)
++||+|||| |+|| .+++..|+. .++.+. +|.| + |++++++++......+.. .....+++.+++.++++
T Consensus 3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~--eV~L--~--Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal 75 (480)
T 1obb_A 3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGS--TVTL--M--DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI 75 (480)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTC--EEEE--E--CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHhcCcCCCC--EEEE--E--eCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHh
Confidence 579999995 9985 445678874 344221 3554 4 677788887433332221 12334566666656999
Q ss_pred CCCcEEEEeCCC------------CCCCCCch--hh------------hHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 171 EDAEWALLIGAK------------PRGPGMER--AG------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 171 ~dADiViitag~------------~rk~g~~r--~d------------ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+|||+||++++. |+|+|+.| .| ++.+|+++++++++.|+++ ||+||+|++|||
T Consensus 76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNP 154 (480)
T 1obb_A 76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAANP 154 (480)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECSSC
T ss_pred CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 999999999875 45667655 33 5899999999999999999 699999999999
Q ss_pred chhHHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchhhccc
Q 015897 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD 303 (398)
Q Consensus 225 ~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~~ 303 (398)
+|++|++++|+. +.|+||+|+.+|+ +++.| +.+|+++++|+. +|+| || +.||.+.+.+|+.+...+.+
T Consensus 155 vdi~t~~~~k~p---~~rviG~c~~~~~--~~~~l-~~lgv~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~ 223 (480)
T 1obb_A 155 IFEGTTLVTRTV---PIKAVGFCHGHYG--VMEIV-EKLGLEEEKVDW-QVAGVNH----GIWLNRFRYNGGNAYPLLDK 223 (480)
T ss_dssp HHHHHHHHHHHS---CSEEEEECSGGGH--HHHHH-HHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHH
T ss_pred HHHHHHHHHHCC---CCcEEecCCCHHH--HHHHH-HHhCCCHHHceE-EEEeecc----hhhhhheeeCCeEcHHHHHH
Confidence 999999999852 2389999999995 78999 999999999996 9999 99 78888888777543211100
Q ss_pred ----------------------------------c-------ccc------H-------------------------HHH
Q 015897 304 ----------------------------------H-------KWL------E-------------------------EGF 311 (398)
Q Consensus 304 ----------------------------------~-------~~~------~-------------------------~el 311 (398)
. +|. . .+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~ 303 (480)
T 1obb_A 224 WIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKV 303 (480)
T ss_dssp HHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHccCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHH
Confidence 0 121 1 001
Q ss_pred HHHHHhhhHHHHHhc---C--------CC------------------cHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeC
Q 015897 312 TETIQKRGGLLIKKW---G--------RS------------------SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 362 (398)
Q Consensus 312 ~~~v~~~~~~ii~~~---G--------~t------------------~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~ 362 (398)
.+...+.-+++++.. . .+ ..+..|..|+++|. +|++.++.++|.++
T Consensus 304 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~-----~~~~~~~~vnv~N~ 378 (480)
T 1obb_A 304 TEITKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALL-----NDNKARFVVNIPNK 378 (480)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHH-----HCCCEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHH-----hCCCeEEEEEeeCC
Confidence 111111112222211 1 00 01145778888876 78999999999999
Q ss_pred CccCCCCCceEEEEeEEEcCCCceeeEeec-cC
Q 015897 363 GNPYGIAEDIVFSMPCRSKKVTSVCREMVI-MN 394 (398)
Q Consensus 363 G~~ygip~dv~~svP~~ig~~Gv~~~~i~~-l~ 394 (398)
|...|+|+|+++++||+++++|++|..+.+ ||
T Consensus 379 G~I~~lp~d~vVEvp~~v~~~G~~p~~~g~~lP 411 (480)
T 1obb_A 379 GIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLP 411 (480)
T ss_dssp TSSTTSCTTSEEEEEEEEETTEEEECCCSSCCC
T ss_pred ceeCCCCCCeEEEEEEEEcCCCCEeeccCCCCC
Confidence 999999999999999999999998877777 66
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=285.30 Aligned_cols=277 Identities=15% Similarity=0.113 Sum_probs=194.3
Q ss_pred CCCEEEEEcCCCchH--HHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 95 KMVNIAVSGAAGMIA--NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG--~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
+.+||+|||| |++| ..++..|+....+.. +|. |+ |+++++++.... +.+.......+++.++|..+|++|
T Consensus 4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~g--eV~--L~--Di~~e~le~~~~-~~~~l~~~~~~I~~TtD~~eAl~d 75 (450)
T 3fef_A 4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSG--TVA--LY--DLDFEAAQKNEV-IGNHSGNGRWRYEAVSTLKKALSA 75 (450)
T ss_dssp CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCE--EEE--EE--CSSHHHHHHHHH-HHTTSTTSCEEEEEESSHHHHHTT
T ss_pred CCCEEEEECC-ChhHhHHHHHHHHHhccccCC--eEE--EE--eCCHHHHHHHHH-HHHHHhccCCeEEEECCHHHHhcC
Confidence 4579999995 9984 678888876443211 255 45 555666543211 121111123467777888899999
Q ss_pred CcEEEEeCC------------CCCCCCCchh--hh--------HHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 173 AEWALLIGA------------KPRGPGMERA--GL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 173 ADiViitag------------~~rk~g~~r~--dl--------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
||+||++.. .|+|+|+.|. |. ..+|++++.++++.|+++ +|+||+|++|||+|++|+
T Consensus 76 ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~tNPvdi~t~ 154 (450)
T 3fef_A 76 ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYTNPMSVCTR 154 (450)
T ss_dssp CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHH
T ss_pred CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHH
Confidence 999999874 6889998765 54 459999999999999999 699999999999999999
Q ss_pred HHHHHCCCCCCceEEecCchhHHHHHHHHHHHc----C---cCcCceeeEEEEe-ccCCCccccccceEEcCccchhhcc
Q 015897 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKA----G---VFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK 302 (398)
Q Consensus 231 ~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~l----g---v~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~ 302 (398)
+++|.+|. .|+||+|+. ..+++..+|+.| | +++++|+. .+.| || +.||++++++|+++.+.+.
T Consensus 155 ~~~k~~p~--~rviG~C~~--~~~~~~~~a~~l~~~lg~~~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~ 225 (450)
T 3fef_A 155 VLYKVFPG--IKAIGCCHE--VFGTQKLLAEMVTERLGIEVPRREDIRV-NVLGINH----FTWITKASYRHIDLLPIFR 225 (450)
T ss_dssp HHHHHCTT--CEEEECCSH--HHHHHHHHHHHHHHHHCCCCSCGGGEEE-EEEEETT----EEEEEEEEETTEEHHHHHH
T ss_pred HHHHHCCC--CCEEEeCCc--HHHHHHHHHHHHHhhcCCCCCChhHeEE-EEeeecC----eEeEEEEEECCEEChHHHH
Confidence 99987542 389999998 489999999999 5 77999996 8899 99 9999999999987764221
Q ss_pred c-------c-------ccc----------HHHHHHH----------------------------------------HHhh
Q 015897 303 D-------H-------KWL----------EEGFTET----------------------------------------IQKR 318 (398)
Q Consensus 303 ~-------~-------~~~----------~~el~~~----------------------------------------v~~~ 318 (398)
+ . .|. .-++.+. +.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~ 305 (450)
T 3fef_A 226 EFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEK 305 (450)
T ss_dssp HHHHHHTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHhhcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHH
Confidence 1 0 010 0011110 0000
Q ss_pred ---hHHHHHhcC---CCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeec
Q 015897 319 ---GGLLIKKWG---RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVI 392 (398)
Q Consensus 319 ---~~~ii~~~G---~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~ 392 (398)
-.++.+... ...++..++.|+++|. +|++.++++|++++|...|+|+|+++|+||+++++|+.+..+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~e~~~~ii~aI~-----~d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g~ 380 (450)
T 3fef_A 306 RQETERLIVQQRGVAEKASGEEGVNIIAALL-----GLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGA 380 (450)
T ss_dssp HHHHHHHHHTTCCCCCSCCSCCHHHHHHHHT-----TSCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCCC
T ss_pred HHHHHHHhcCCcCcCcCccHHHHHHHHHHHH-----cCCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccCC
Confidence 011111000 0001234667777764 79999999999999943499999999999999999995544444
Q ss_pred cC
Q 015897 393 MN 394 (398)
Q Consensus 393 l~ 394 (398)
||
T Consensus 381 Lp 382 (450)
T 3fef_A 381 LP 382 (450)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=287.13 Aligned_cols=276 Identities=13% Similarity=0.091 Sum_probs=199.1
Q ss_pred CEEEEEcCCCchHHHH--HHHHHhcCcCC-CCCceEEEecccccchhhHHHHHHHHhhhcC--CCcceEEEecCcccccC
Q 015897 97 VNIAVSGAAGMIANHL--LFKLAAGEVLG-PDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~l--a~~L~~~~~~~-~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~ 171 (398)
|||+|||| |++|++. ...|+....+. ...+|+ |+ |++++++++.+.++++... +...+++.++|.++|++
T Consensus 1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~--L~--Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~ 75 (477)
T 3u95_A 1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIY--LM--DVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIE 75 (477)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEE--EE--CSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHT
T ss_pred CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEE--EE--CCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhC
Confidence 69999996 9999874 44566554432 112344 45 5678999999988887642 22236777888889999
Q ss_pred CCcEEEEeCCC-------------------CCCCCCchhhhH---------------HHHHHHHHHHHHHHHHhcCCCeE
Q 015897 172 DAEWALLIGAK-------------------PRGPGMERAGLL---------------DINGQIFAEQGKALNAVASRNVK 217 (398)
Q Consensus 172 dADiViitag~-------------------~rk~g~~r~dll---------------~~N~~i~~~i~~~i~~~a~p~a~ 217 (398)
|||+||+++|. |+|+|++|.++. .+|++++.+++++|+++ ||+||
T Consensus 76 gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~-~P~A~ 154 (477)
T 3u95_A 76 GADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKM-APKAY 154 (477)
T ss_dssp TCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHH-CTTCE
T ss_pred CCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhh-CCCeE
Confidence 99999999864 347787766542 46899999999999999 69999
Q ss_pred EEEECCCchhHHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCcc
Q 015897 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLP 296 (398)
Q Consensus 218 vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p 296 (398)
+||+|||++++|++++|++ ++ |+||.|.. .+....+++.||+++++|+. .+.| || +.||...+.+|+.
T Consensus 155 ~in~tNP~~i~t~a~~~~~-~~--k~vGlC~~---~~~~~~~~~~Lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D 223 (477)
T 3u95_A 155 LMQTANPVFEITQAVRRWT-GA--NIIGFCHG---VAGVYEVFERLGLDPEEVDW-QVAGVNH----GIWLNRFRYRGKD 223 (477)
T ss_dssp EEECSSCHHHHHHHHHHHH-CC--CEEEECCG---GGHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEE
T ss_pred EEEecChHHHHHHHHHHhC-CC--CeEEECCC---HHHHHHHHHHhCCCHHHcEE-EEeecCC----CeeeeeeeecCCc
Confidence 9999999999999999986 55 89999754 34456688899999999995 7799 99 7888888888865
Q ss_pred chhhccc----------------ccc-----------------------------cHH-------------------HHH
Q 015897 297 VKEIIKD----------------HKW-----------------------------LEE-------------------GFT 312 (398)
Q Consensus 297 ~~~~i~~----------------~~~-----------------------------~~~-------------------el~ 312 (398)
+...+.+ ..| ..+ .+.
T Consensus 224 ~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (477)
T 3u95_A 224 AYPLLDEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFH 303 (477)
T ss_dssp CHHHHHHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHH
T ss_pred ccHHHHHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHH
Confidence 4321110 000 000 011
Q ss_pred HHHHhhhH-------HHHH--------h-----cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCce
Q 015897 313 ETIQKRGG-------LLIK--------K-----WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372 (398)
Q Consensus 313 ~~v~~~~~-------~ii~--------~-----~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv 372 (398)
+.+++... ++.+ . .+...++..|+.|+++|. +|++.++.+||.++|..-++|+|+
T Consensus 304 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~AI~-----~~~~~~~~vNv~N~G~I~nLP~Da 378 (477)
T 3u95_A 304 EHLRRARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSGEQHIPFINAIA-----NNKRVRLFLNVENQGALKDFPDDL 378 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCCCSHHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCTTS
T ss_pred HHHHHHHHHHHHHHHHHhhccchhcccccchhcccccccHHHHHHHHHHHh-----CCCCeEEEEEeecCcccCCCCCCc
Confidence 11111111 1111 0 111223346778888886 799999999999999888999999
Q ss_pred EEEEeEEEcCCCceeeEeeccC
Q 015897 373 VFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 373 ~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
++++||+++++|++|..+.++|
T Consensus 379 vVEVpc~Vd~~Gi~P~~vg~~p 400 (477)
T 3u95_A 379 VMELPVWVDSSGIHREKVEPDL 400 (477)
T ss_dssp EEEEEEEEETTEEEECCCCSCC
T ss_pred EEEEEEEEcCCCcccccCCCCC
Confidence 9999999999999887776665
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=91.35 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=93.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh-------hhc--C-C-----CcceE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-------DSL--F-P-----LLREV 160 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~-------d~~--~-~-----~~~~v 160 (398)
..||+|||| |.+|+.+|..++..|+ +|.| + |++++.++.....++ +.. . . .+..+
T Consensus 6 ~~~VaViGa-G~MG~giA~~~a~~G~-----~V~l--~--D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i 75 (319)
T 3ado_A 6 AGDVLIVGS-GLVGRSWAMLFASGGF-----RVKL--Y--DIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLI 75 (319)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----CEEE--E--CSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTE
T ss_pred CCeEEEECC-cHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhc
Confidence 459999995 9999999999999987 4655 4 556555542222221 110 0 0 01246
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCC
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~ 240 (398)
+.+++..+++++||+||-+. .+|.++-+++.++|.+++.|++++ +||...+...-+.... ..|
T Consensus 76 ~~~~~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is~ia~~~-~~p 138 (319)
T 3ado_A 76 SSCTNLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPSKLFTGL-AHV 138 (319)
T ss_dssp EEECCHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHHHHHTTC-TTG
T ss_pred ccccchHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhccchhhhhhc-cCC
Confidence 66666678999999999874 346889999999999998888887 9999886443333322 222
Q ss_pred CceEEe------------------cCchhHHHHHHHHHHHcCcC
Q 015897 241 AKNFHA------------------LTRLDENRAKCQLALKAGVF 266 (398)
Q Consensus 241 ~kvig~------------------gt~lDs~Rl~~~lA~~lgv~ 266 (398)
.|++|+ .|.-++...-..+++.+|..
T Consensus 139 ~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~ 182 (319)
T 3ado_A 139 KQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQS 182 (319)
T ss_dssp GGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred CcEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCc
Confidence 244443 25555555555566777643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=82.32 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC----------C-----Ccce
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----------P-----LLRE 159 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~----------~-----~~~~ 159 (398)
+++||+|||+ |.+|..++..++..|. +|.+ + |+++++++.....+.+... . ....
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGF-----AVTA--Y--DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC
Confidence 4679999995 9999999999999875 3554 3 6777777655444322110 0 0113
Q ss_pred EEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 160 v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+..+++..+++++||+||.+... +..+..++.+.+.+++.|+++++..|...
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~il~s~tS~~ 124 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTIFATNSSTL 124 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred eEEeCCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 45556666789999999998632 24566666777777766788775444443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.7e-06 Score=80.91 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=68.3
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh-----cCCC---------
Q 015897 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-----LFPL--------- 156 (398)
Q Consensus 91 ~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~-----~~~~--------- 156 (398)
.|..+++||+|||+ |.+|..++..|+..|. +|.+ + |+++++++.....+.+. ....
T Consensus 10 ~~~~~~~~I~VIG~-G~mG~~iA~~la~~G~-----~V~~--~--d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~ 79 (302)
T 1f0y_A 10 AKKIIVKHVTVIGG-GLMGAGIAQVAAATGH-----TVVL--V--DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDE 79 (302)
T ss_dssp --CCCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred cccccCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchh
Confidence 34456789999995 9999999999998875 3544 3 67767665432211110 0000
Q ss_pred -----cceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 157 -----LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 157 -----~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
...++.+++..+++++||+||++... +..+.+++.+.+.++..++++|+..++.
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~aD~Vi~avp~--------------~~~~~~~v~~~l~~~~~~~~iv~s~ts~ 138 (302)
T 1f0y_A 80 FVEKTLSTIATSTDAASVVHSTDLVVEAIVE--------------NLKVKNELFKRLDKFAAEHTIFASNTSS 138 (302)
T ss_dssp HHHHHHHTEEEESCHHHHTTSCSEEEECCCS--------------CHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred hHHHHHhceEEecCHHHhhcCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 12355666666699999999998531 2345566667777765567766433333
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.9e-06 Score=89.29 Aligned_cols=143 Identities=11% Similarity=0.074 Sum_probs=92.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH----Hhh-------hc-CCCcceEEEe
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LED-------SL-FPLLREVKIG 163 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D----L~d-------~~-~~~~~~v~i~ 163 (398)
..||+|||| |.+|+.+|..++..|+ +|.| + |++++.++.-... +.. .. ......++.
T Consensus 316 i~~v~ViGa-G~MG~gIA~~~a~aG~-----~V~l--~--D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 384 (742)
T 3zwc_A 316 VSSVGVLGL-GTMGRGIAISFARVGI-----SVVA--V--ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF- 384 (742)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTC-----EEEE--E--CSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC-----chhc--c--cchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-
Confidence 469999995 9999999999999886 4554 4 5565554321111 110 00 011123333
Q ss_pred cCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh-HHHHHHHHCCCCCCc
Q 015897 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAPSIPAK 242 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-~t~~~~k~~~~~~~k 242 (398)
+++++++++||+||-+. .+|.++-+++.+++++++.|++++ +||...+ ++.+. +.. ..|.|
T Consensus 385 ~~~~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~i~~ia-~~~-~~p~r 446 (742)
T 3zwc_A 385 SSSTKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDIA-SST-DRPQL 446 (742)
T ss_dssp ESCGGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHH-TTS-SCGGG
T ss_pred cCcHHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCChHHHH-hhc-CCccc
Confidence 46789999999999884 246889999999999998889877 9998776 44443 222 22224
Q ss_pred eEE------------------ecCchhHHHHHHHHHHHcCcCc
Q 015897 243 NFH------------------ALTRLDENRAKCQLALKAGVFY 267 (398)
Q Consensus 243 vig------------------~gt~lDs~Rl~~~lA~~lgv~~ 267 (398)
++| ..|.-++...-..+++++|..|
T Consensus 447 ~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p 489 (742)
T 3zwc_A 447 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 489 (742)
T ss_dssp EEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred cccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 443 2355556555566777777543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.6e-06 Score=84.76 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH----Hhhhc-C------CCcceEEEe
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSL-F------PLLREVKIG 163 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D----L~d~~-~------~~~~~v~i~ 163 (398)
+++||+|||+ |.+|..+|..|+..|+ +|.+ + |+++++......+ +.... . .....++.+
T Consensus 53 ~i~kVaVIGa-G~MG~~IA~~la~aG~-----~V~l--~--D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t 122 (460)
T 3k6j_A 53 DVNSVAIIGG-GTMGKAMAICFGLAGI-----ETFL--V--VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT 122 (460)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--E--ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe
Confidence 4579999995 9999999999999886 3554 4 5565543222111 11100 0 011245555
Q ss_pred cCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+ +++++++||+||.+.. .+..+.+++.+.+.+++.|++++ +||..
T Consensus 123 ~-dl~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTS 167 (460)
T 3k6j_A 123 S-DFHKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTS 167 (460)
T ss_dssp S-CGGGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCS
T ss_pred C-CHHHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCC
Confidence 5 4579999999999853 24567777778888887788877 45543
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.9e-06 Score=80.29 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=79.8
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc----CCCcceEEEecCcc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPY 167 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~ 167 (398)
|...++||+|||+ |.+|.+++..|+..|. +|.+ + |++++.++....+-.... ..+...+..+++..
T Consensus 25 m~~~~mkI~VIGa-G~mG~alA~~La~~G~-----~V~l--~--~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ 94 (356)
T 3k96_A 25 MEPFKHPIAILGA-GSWGTALALVLARKGQ-----KVRL--W--SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLK 94 (356)
T ss_dssp --CCCSCEEEECC-SHHHHHHHHHHHTTTC-----CEEE--E--CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHH
T ss_pred ccccCCeEEEECc-cHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHH
Confidence 3344679999995 9999999999998874 3654 3 666666654433211100 01123466777777
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh----HHHHHHHHCC
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAP 237 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~~~ 237 (398)
+++++||+||++.. .+.++++.+.+..+..++.+||.++|-.+. +..++.+..+
T Consensus 95 ea~~~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~ 152 (356)
T 3k96_A 95 ASLEGVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG 152 (356)
T ss_dssp HHHTTCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC
T ss_pred HHHhcCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC
Confidence 89999999999852 246777778888776678899999886554 3355555543
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.4e-06 Score=85.46 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-----CC---------cceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-----PL---------LREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-----~~---------~~~v 160 (398)
+++||+|||+ |.+|..++..|+..|. +|.+ + |++++.++.....+..... .. ...+
T Consensus 4 ~~~kVgVIGa-G~MG~~IA~~la~aG~-----~V~l--~--D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 73 (483)
T 3mog_A 4 NVQTVAVIGS-GTMGAGIAEVAASHGH-----QVLL--Y--DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRL 73 (483)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHHTTC-----CEEE--E--CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce
Confidence 4579999995 9999999999999885 3654 3 6777777654443322110 00 1134
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+.++ +++++++||+||.+... +..+.+++.+.+.+++.|++++ +||...+
T Consensus 74 ~~~~-~~~~~~~aDlVIeAVpe--------------~~~vk~~v~~~l~~~~~~~~Il--asntSti 123 (483)
T 3mog_A 74 IPVT-DIHALAAADLVIEAASE--------------RLEVKKALFAQLAEVCPPQTLL--TTNTSSI 123 (483)
T ss_dssp EEEC-CGGGGGGCSEEEECCCC--------------CHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred eEeC-CHHHhcCCCEEEEcCCC--------------cHHHHHHHHHHHHHhhccCcEE--EecCCCC
Confidence 5544 56789999999998531 3456677777788876677766 4454433
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=83.01 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=55.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC---------------
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------- 156 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--------------- 156 (398)
+.+++||+||| +|.+|..+|..|+.. |.. +|.+ + |+++++.++.+.+|.....+.
T Consensus 15 ~~~~mkIaVIG-lG~mG~~lA~~la~~~G~~----~V~~--~--D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~ 85 (478)
T 3g79_A 15 RGPIKKIGVLG-MGYVGIPAAVLFADAPCFE----KVLG--F--QRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVV 85 (478)
T ss_dssp HCSCCEEEEEC-CSTTHHHHHHHHHHSTTCC----EEEE--E--CCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHH
T ss_pred cCCCCEEEEEC-cCHHHHHHHHHHHHhCCCC----eEEE--E--ECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhc
Confidence 45678999999 599999999999998 641 2443 4 666662222333333321111
Q ss_pred -cceEEEecCcccccCCCcEEEEeCCCCCC
Q 015897 157 -LREVKIGINPYELFEDAEWALLIGAKPRG 185 (398)
Q Consensus 157 -~~~v~i~~~~~eal~dADiViitag~~rk 185 (398)
...++.+++ ++++++||+||++.+.|..
T Consensus 86 ~~g~l~~ttd-~ea~~~aDvViiaVptp~~ 114 (478)
T 3g79_A 86 KAGKFECTPD-FSRISELDAVTLAIQTPFA 114 (478)
T ss_dssp HTTCEEEESC-GGGGGGCSEEEECCCCCCC
T ss_pred ccCCeEEeCc-HHHHhcCCEEEEecCCchh
Confidence 234667766 8999999999999877653
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=73.49 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=68.8
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
++++|+||+||| +|++|..++..|...+. ++.+ + .|+++++++..+.++.. ....++.++++
T Consensus 19 ~~m~mmkI~IIG-~G~mG~~la~~l~~~g~-----~V~~-v--~~r~~~~~~~l~~~~g~---------~~~~~~~~~~~ 80 (220)
T 4huj_A 19 YFQSMTTYAIIG-AGAIGSALAERFTAAQI-----PAII-A--NSRGPASLSSVTDRFGA---------SVKAVELKDAL 80 (220)
T ss_dssp TGGGSCCEEEEE-CHHHHHHHHHHHHHTTC-----CEEE-E--CTTCGGGGHHHHHHHTT---------TEEECCHHHHT
T ss_pred hhhcCCEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE-E--ECCCHHHHHHHHHHhCC---------CcccChHHHHh
Confidence 445578999999 59999999999998775 2443 1 36777877766554321 12345677899
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++|+||++.. ...+.++.+.+.. . ++.+||.++||..
T Consensus 81 ~aDvVilavp----------------~~~~~~v~~~l~~-~-~~~ivi~~~~g~~ 117 (220)
T 4huj_A 81 QADVVILAVP----------------YDSIADIVTQVSD-W-GGQIVVDASNAID 117 (220)
T ss_dssp TSSEEEEESC----------------GGGHHHHHTTCSC-C-TTCEEEECCCCBC
T ss_pred cCCEEEEeCC----------------hHHHHHHHHHhhc-c-CCCEEEEcCCCCC
Confidence 9999999852 1234455555544 2 5779999999985
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=9.3e-06 Score=83.20 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh---------cCCC---cceEEE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS---------LFPL---LREVKI 162 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~---------~~~~---~~~v~i 162 (398)
+++||+|||+ |.+|..++..|+..|. +|.+ + |++++.++.....+++. ..+. ....++
T Consensus 36 ~~~kV~VIGa-G~MG~~iA~~la~~G~-----~V~l--~--D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 105 (463)
T 1zcj_A 36 PVSSVGVLGL-GTMGRGIAISFARVGI-----SVVA--V--ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 105 (463)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC-----EEEE--E--CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh
Confidence 3579999995 9999999999998875 3544 3 66666665332222110 0000 011344
Q ss_pred ecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 163 ~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+ .+++++++||+||++... +..+.+++.+.+.+++.|+++|+ +|...+
T Consensus 106 ~-~~~~~~~~aDlVIeaVpe--------------~~~~k~~v~~~l~~~~~~~~ii~--snTs~~ 153 (463)
T 1zcj_A 106 S-SSTKELSTVDLVVEAVFE--------------DMNLKKKVFAELSALCKPGAFLC--TNTSAL 153 (463)
T ss_dssp E-SCGGGGTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEEE--ECCSSS
T ss_pred c-CCHHHHCCCCEEEEcCCC--------------CHHHHHHHHHHHHhhCCCCeEEE--eCCCCc
Confidence 4 455889999999998631 34566667777777766777764 466654
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=85.80 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh---cC-----------CCcceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS---LF-----------PLLREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~---~~-----------~~~~~v 160 (398)
+++||+|||+ |.+|..+|..++..|. +|.+ + |++++.++.....+++. .. .....+
T Consensus 311 ~~~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l--~--D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 380 (725)
T 2wtb_A 311 KIKKVAIIGG-GLMGSGIATALILSNY-----PVIL--K--EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLL 380 (725)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHTTTC-----CEEE--E--CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSE
T ss_pred cCcEEEEEcC-CHhhHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcce
Confidence 3578999995 9999999999999885 3654 3 67767665322222111 00 012245
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+.++ +++++++||+||.+.. .+..+.+++.+.+.+++.|++++ ++|...+
T Consensus 381 ~~~~-d~~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl 430 (725)
T 2wtb_A 381 KGSL-DYESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTI 430 (725)
T ss_dssp EEES-SSGGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred EEeC-CHHHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCC
Confidence 5554 4589999999999853 23556667777788876677755 6776443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.2e-05 Score=75.04 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+|||+ |++|..++..|+..+.-. +.|.+ .|+++++++....++ .+..+.+..+++++||+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~--~~V~v----~dr~~~~~~~l~~~~---------gi~~~~~~~~~~~~aDv 66 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDP--NRICV----TNRSLDKLDFFKEKC---------GVHTTQDNRQGALNADV 66 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCG--GGEEE----ECSSSHHHHHHHHTT---------CCEEESCHHHHHSSCSE
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCC--CeEEE----EeCCHHHHHHHHHHc---------CCEEeCChHHHHhcCCe
Confidence 479999995 999999999999987411 13554 367777765444321 23455677899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh-cCCCeEEEEECCCch
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNPCN 226 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP~d 226 (398)
||++.. | +.+.++.+.+..+ ..++.+||.+++...
T Consensus 67 Vilav~-p---------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 67 VVLAVK-P---------------HQIKMVCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp EEECSC-G---------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred EEEEeC-H---------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence 999862 1 2344555555554 456778887777765
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.1e-05 Score=79.05 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC----------cceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~~~ 166 (398)
|||+||| +|.+|..++..|+..|. +|.+ + |+++++++...........+- ...++.+++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~-----~V~~--~--D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA-----NVRC--I--DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC-----EEEE--E--ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 6999999 59999999999999875 3543 3 677777665443111000000 1246677777
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+++++||+||++.+.|..+..+ -+...+.++++.+.++..++.+||..|
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDGS------ADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhcCCEEEEEcCCCcccCCC------cChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 77899999999998776433221 123344555555555544556655554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=81.52 Aligned_cols=124 Identities=10% Similarity=0.108 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH--------HhhhcC-CCcceEEEecCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLF-PLLREVKIGINP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D--------L~d~~~-~~~~~v~i~~~~ 166 (398)
++||+||| +|.||..++..|+..+.-. +|.+ .|+++++++..... +.+... .....++.+++.
T Consensus 9 ~mkI~VIG-~G~vG~~~A~~La~~g~g~---~V~~----~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~ 80 (481)
T 2o3j_A 9 VSKVVCVG-AGYVGGPTCAMIAHKCPHI---TVTV----VDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDI 80 (481)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHCTTS---EEEE----ECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCC---EEEE----EECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence 57999999 5999999999999874211 2443 36777776644321 100000 001135666666
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE-CCCchhH
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTN 228 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~~ 228 (398)
.+++++||+||++.+.|.+...++.+ -..+...+.+.++.|.++..++.+||.. |+|....
T Consensus 81 ~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~ 142 (481)
T 2o3j_A 81 PKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA 142 (481)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred HHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH
Confidence 78899999999998777543322221 0111234455556666664556655543 7786653
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.7e-05 Score=76.59 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=68.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH--------HhhhcCC--CcceEEEecCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP--LLREVKIGINP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D--------L~d~~~~--~~~~v~i~~~~ 166 (398)
|||+||| +|.||..++..|+..|. +|.+ .|+++++++..... +.+.... ...+++.+++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-----~V~~----~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVIG----VDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 5899999 59999999999998874 3543 36777776644321 0000000 01235666666
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCC---CeEEEEE-CCCchh
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR---NVKVIVV-GNPCNT 227 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p---~a~vIvv-tNP~d~ 227 (398)
.+++++||+||++...|..... ..|+ ..+.++++.+.++..+ +.+|+.. |+|...
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~-~~dl-----~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNG-DLDL-----GYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTS-SBCC-----HHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred HHHhccCCEEEEEcCCCcccCC-Ccch-----HHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 6789999999999876542211 2222 2233333444443345 6666654 788765
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=79.64 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=72.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh--------hhcCCCcceEEEecCccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSLFPLLREVKIGINPYE 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~--------d~~~~~~~~v~i~~~~~e 168 (398)
|||+|||+ |.||..++..|+. +. +|.+ .|+++++++....... +........+..+++..+
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~-----~V~~----~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~ 69 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QN-----EVTI----VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TS-----EEEE----ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CC-----EEEE----EECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence 58999995 9999999999987 63 3543 3677776654432110 000000113455666568
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEE-ECCCchhHHHHHH
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICL 233 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d~~t~~~~ 233 (398)
++++||+||++...+...+..+.|+ ..+.++++.+.+. .++.+||. .|||.+..-.+..
T Consensus 70 ~~~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~l-~~~~iVV~~ST~~~g~~~~l~~ 129 (402)
T 1dlj_A 70 AYKEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQ 129 (402)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHH
T ss_pred HhcCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHhh-CCCCEEEEeCCCCccHHHHHHH
Confidence 8999999999876553222333332 2333444444443 57777776 7999988665543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=79.14 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=71.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH-----------HHhhhcCCCcceEE
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------ELEDSLFPLLREVK 161 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~-----------DL~d~~~~~~~~v~ 161 (398)
|++|+||+||| +|.||..++..|+..+. + .+|.+ + |+++++++.... ++.... ....++
T Consensus 2 M~~~mkI~VIG-~G~mG~~lA~~La~~g~-G--~~V~~--~--d~~~~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~~ 71 (467)
T 2q3e_A 2 MFEIKKICCIG-AGYVGGPTCSVIAHMCP-E--IRVTV--V--DVNESRINAWNSPTLPIYEPGLKEVVESC--RGKNLF 71 (467)
T ss_dssp CCCCCEEEEEC-CSTTHHHHHHHHHHHCT-T--SEEEE--E--CSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEE
T ss_pred CCCccEEEEEC-CCHHHHHHHHHHHhcCC-C--CEEEE--E--ECCHHHHHHHhCCCCCcCCCCHHHHHHHh--hcCCEE
Confidence 45678999999 59999999999998731 1 13443 3 677776654321 011000 002355
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE-CCCchh
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~ 227 (398)
.+++..+++++||+||++...|........+ -.-+...+.+..+.+.++..++.+||+. |+|...
T Consensus 72 ~t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~ 137 (467)
T 2q3e_A 72 FSTNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA 137 (467)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred EECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence 6666678899999999987655321110000 0012234555556666654566666554 667654
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.8e-05 Score=83.82 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh----c-CCC---------cceE
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-FPL---------LREV 160 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~----~-~~~---------~~~v 160 (398)
+.+||+|||+ |.+|..++..++..|. +|.+ + |++++.++.....+++. . ... ...+
T Consensus 313 ~i~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l--~--D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 382 (715)
T 1wdk_A 313 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PILM--K--DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 382 (715)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred cCCEEEEECC-ChhhHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence 3578999995 9999999999999886 3554 3 66666665321111111 0 000 1235
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+++ ++++++||+||.+.. .+..+.+++...+.+++.|++++ +||..
T Consensus 383 ~~~~d-~~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntS 430 (715)
T 1wdk_A 383 RPTLS-YGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTS 430 (715)
T ss_dssp EEESS-STTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCS
T ss_pred EEECC-HHHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCC
Confidence 55554 489999999999853 23456667777788876677766 55543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.3e-05 Score=73.14 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
..+||+|||+ |.+|..+|..|+ .|. +|.+ + |++++.++.....+.+. .+..++.+++. +++++||
T Consensus 11 ~~~~V~vIG~-G~MG~~iA~~la-aG~-----~V~v--~--d~~~~~~~~~~~~l~~~---~~~~i~~~~~~-~~~~~aD 75 (293)
T 1zej_A 11 HHMKVFVIGA-GLMGRGIAIAIA-SKH-----EVVL--Q--DVSEKALEAAREQIPEE---LLSKIEFTTTL-EKVKDCD 75 (293)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHH-TTS-----EEEE--E--CSCHHHHHHHHHHSCGG---GGGGEEEESSC-TTGGGCS
T ss_pred CCCeEEEEee-CHHHHHHHHHHH-cCC-----EEEE--E--ECCHHHHHHHHHHHHHH---HhCCeEEeCCH-HHHcCCC
Confidence 3579999995 999999999999 876 3554 3 67777776443332221 12345555544 4599999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (398)
+||.+... +..+.+.+...+... |++++.
T Consensus 76 lVieavpe--------------~~~vk~~l~~~l~~~--~~~Ila 104 (293)
T 1zej_A 76 IVMEAVFE--------------DLNTKVEVLREVERL--TNAPLC 104 (293)
T ss_dssp EEEECCCS--------------CHHHHHHHHHHHHTT--CCSCEE
T ss_pred EEEEcCcC--------------CHHHHHHHHHHHhcC--CCCEEE
Confidence 99998532 344555555567765 788763
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=68.68 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCc-eEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP-IALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~-i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
++||+|||+ |.+|..++..|...+. + +.+ .|+++++++.....+ .+....+..+.++++|
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~-----~~v~~----~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~D 70 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGF-----RIVQV----YSRTEESARELAQKV---------EAEYTTDLAEVNPYAK 70 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTC-----CEEEE----ECSSHHHHHHHHHHT---------TCEEESCGGGSCSCCS
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC-----eEEEE----EeCCHHHHHHHHHHc---------CCceeCCHHHHhcCCC
Confidence 469999995 9999999999988764 2 333 367777665443321 1234456667889999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+||++... ....++.+.+.+...++.+|+..++-
T Consensus 71 vvi~av~~----------------~~~~~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 71 LYIVSLKD----------------SAFAELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp EEEECCCH----------------HHHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred EEEEecCH----------------HHHHHHHHHHHhhcCCCcEEEECCCC
Confidence 99998531 12355666666654578888888774
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.5e-05 Score=78.26 Aligned_cols=120 Identities=11% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH--------HhhhcCCCcceEEEecCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFPLLREVKIGINP 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D--------L~d~~~~~~~~v~i~~~~ 166 (398)
++|||+||| +|.+|..+|..|+. +. +|.+ + |+++++++..... |++........++.+++.
T Consensus 35 ~~mkIaVIG-lG~mG~~lA~~La~-G~-----~V~~--~--D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 35 EFMKITISG-TGYVGLSNGVLIAQ-NH-----EVVA--L--DIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHT-TS-----EEEE--E--CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHc-CC-----eEEE--E--ecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCH
Confidence 357999999 59999999998887 53 3543 3 6777776644321 111100001246677777
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE-CCCchhHHHH
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTNALI 231 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~~t~~ 231 (398)
.+++++||+||++...+..+.....|+ ..+.+.++.+.+. .|+.+||+- |-|....-.+
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl-----~~V~~v~~~i~~l-~~g~iVV~~STv~pgtt~~l 163 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFNT-----STVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDI 163 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEEC-----HHHHHHHHHHHHH-CTTSEEEECSCCCTTHHHHH
T ss_pred HHHHhCCCEEEEeCCCccccccccccH-----HHHHHHHHHHHhc-CCCcEEEEeCCCChHHHHHH
Confidence 899999999999854432111112221 2223333333342 566665543 4555543333
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.7e-05 Score=69.99 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh--HHHH--------HHHHhhhcCCCcceEEEec
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGV--------AMELEDSLFPLLREVKIGI 164 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~--l~g~--------a~DL~d~~~~~~~~v~i~~ 164 (398)
..+||+||| +|.+|.+++..|+..|. +|.+ + |+++++ .+.. ..++.... + .. ...
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~ 82 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLGH-----EVTI--G--TRDPKATLARAEPDAMGAPPFSQWLPEH-P---HV-HLA 82 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHTCC-------CCHHHHGGGS-T---TC-EEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCChhhhhhhhhhhhhcchhhhHHHhhc-C---ce-ecc
Confidence 357999999 59999999999998874 3544 3 666554 1101 12222111 1 11 234
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+..+++++||+||++...+. -.+.+.+++ .... ++.+||.++||.+
T Consensus 83 ~~~e~~~~aDvVilavp~~~------------~~~~~~~i~---~~~l-~g~ivi~~s~~~~ 128 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGAS------------SIAALTAAG---AENL-AGKILVDIANPLD 128 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGG------------HHHHHHHHC---HHHH-TTSEEEECCCCEE
T ss_pred CHHHHHhcCCEEEEccCcHH------------HHHHHHHhh---hhhc-CCCEEEECCCCCC
Confidence 56788899999999853210 112333331 3332 6889999999974
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00026 Score=67.32 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-CC--cceEEEecCccc---c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PL--LREVKIGINPYE---L 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-~~--~~~v~i~~~~~e---a 169 (398)
||||+|||+ |.+|..++..|+..|. +|.+ + |+++++++....+-..... +. ..++..++ +.+ +
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~--~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGN-----DVTL--I--DQWPAHIEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQ 71 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTT
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCC-----cEEE--E--ECCHHHHHHHHhCCEEEEeCCCeeEecceeec-chhhccc
Confidence 579999995 9999999999998774 3554 3 6776666543322000000 00 00111222 223 3
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
++++|+||++... ..+.++.+.+..+..++.+|+.++|..+.
T Consensus 72 ~~~~d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 72 NEQVDLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp SCCCSEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred CCCCCEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 4499999998531 23456666777665678899999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=66.42 Aligned_cols=111 Identities=12% Similarity=0.029 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh-cCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-LFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~-~~~~~~~v~i~~~~~eal~dA 173 (398)
+.+||.|+||+|++|++++..|+..|. .|.+ ++++.++++..... .. . ....++. ....++++++
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-----~V~~----~~R~~~~~~~~~~~--~~~~-~~~~Dl~--~~~~~~~~~~ 85 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-----EPVA----MVRNEEQGPELRER--GASD-IVVANLE--EDFSHAFASI 85 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGHHHHHHT--TCSE-EEECCTT--SCCGGGGTTC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-----eEEE----EECChHHHHHHHhC--CCce-EEEcccH--HHHHHHHcCC
Confidence 357999999999999999999999874 2443 35666665533221 11 0 0111221 3457889999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|+||.++|.... .+....+..|+.-...+.+.+.+. + .+.+|++|-
T Consensus 86 D~vi~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~iv~~SS 131 (236)
T 3e8x_A 86 DAVVFAAGSGPH--TGADKTILIDLWGAIKTIQEAEKR-G-IKRFIMVSS 131 (236)
T ss_dssp SEEEECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred CEEEECCCCCCC--CCccccchhhHHHHHHHHHHHHHc-C-CCEEEEEec
Confidence 999999886432 334556777888888888888775 3 456666664
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.8e-05 Score=73.79 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCC--CCceEEEecccccchh-----hHHHHHHHHhhhcC----CCcceEEEec
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSLF----PLLREVKIGI 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~--~~~i~L~L~d~D~~~~-----~l~g~a~DL~d~~~----~~~~~v~i~~ 164 (398)
|+||+|||+ |.+|..++..|+..|.... ..+|.+ + |++++ +++.....-....+ .+...+..++
T Consensus 21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~--~--~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRM--W--IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEE--E--CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEE--E--ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 468999995 9999999999988762110 013554 3 55555 44433221100000 0112456666
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHH----hcCCCeEEEEECCCch-------hHHHHHH
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA----VASRNVKVIVVGNPCN-------TNALICL 233 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~----~a~p~a~vIvvtNP~d-------~~t~~~~ 233 (398)
+..+++++||+||++.. .+.+.++.+.+.. +..++.+||..+|-.+ .+..++.
T Consensus 96 ~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~ 159 (375)
T 1yj8_A 96 DLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYIS 159 (375)
T ss_dssp STHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHH
T ss_pred CHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHH
Confidence 66788999999999853 1356667777766 5457889999998643 3455555
Q ss_pred HHC
Q 015897 234 KNA 236 (398)
Q Consensus 234 k~~ 236 (398)
+..
T Consensus 160 ~~~ 162 (375)
T 1yj8_A 160 DFL 162 (375)
T ss_dssp HHS
T ss_pred HHc
Confidence 544
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.9e-05 Score=71.48 Aligned_cols=99 Identities=12% Similarity=0.226 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| +|++|..++..|+..+.... +.|.+ .|+++++++....++ .+....+..++++++|+|
T Consensus 3 ~~i~iIG-~G~mG~~~a~~l~~~g~~~~-~~V~~----~~r~~~~~~~~~~~~---------g~~~~~~~~e~~~~aDvV 67 (247)
T 3gt0_A 3 KQIGFIG-CGNMGMAMIGGMINKNIVSS-NQIIC----SDLNTANLKNASEKY---------GLTTTTDNNEVAKNADIL 67 (247)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTSSCG-GGEEE----ECSCHHHHHHHHHHH---------CCEECSCHHHHHHHCSEE
T ss_pred CeEEEEC-ccHHHHHHHHHHHhCCCCCC-CeEEE----EeCCHHHHHHHHHHh---------CCEEeCChHHHHHhCCEE
Confidence 6899999 59999999999999885432 13544 377777766544332 123455677889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|++. .| +.+.++.+.+..+..++..||..++...
T Consensus 68 ilav-~~---------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 68 ILSI-KP---------------DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp EECS-CT---------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred EEEe-CH---------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 9986 22 2345555666665456777776666655
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=8.4e-05 Score=67.09 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|+||+|.+|..++..|+..+. ++.+ .|+++++++....++.... . ..++.. .+..++++++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVV----GSRREEKAEAKAAEYRRIA-G-DASITG-MKNEDAAEACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESSHHHHHHHHHHHHHHH-S-SCCEEE-EEHHHHHHHCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccc-c-cCCCCh-hhHHHHHhcCCEE
Confidence 5899999679999999999988764 3543 3677666654443322111 1 012332 3455778999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
|++... ...+++.+.+.+.. ++.+++.++|+.+
T Consensus 69 i~~~~~----------------~~~~~~~~~l~~~~-~~~~vi~~~~g~~ 101 (212)
T 1jay_A 69 VLTIPW----------------EHAIDTARDLKNIL-REKIVVSPLVPVS 101 (212)
T ss_dssp EECSCH----------------HHHHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred EEeCCh----------------hhHHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence 998531 12334444444443 5789999999876
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.7e-05 Score=72.90 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=65.9
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh--hHHHHHHHHhhhcCCCcceEEEecCcc
Q 015897 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPLLREVKIGINPY 167 (398)
Q Consensus 90 ~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~--~l~g~a~DL~d~~~~~~~~v~i~~~~~ 167 (398)
.+++. +|||+|||+ |.+|..++..|+..|.... .+|.+ + |++++ +++... .. .+.+..+..
T Consensus 17 ~~~~~-~mkI~iIG~-G~mG~ala~~L~~~G~~~~-~~V~v--~--~r~~~~~~~~~l~----~~------G~~~~~~~~ 79 (322)
T 2izz_A 17 NLYFQ-SMSVGFIGA-GQLAFALAKGFTAAGVLAA-HKIMA--S--SPDMDLATVSALR----KM------GVKLTPHNK 79 (322)
T ss_dssp ------CCCEEEESC-SHHHHHHHHHHHHTTSSCG-GGEEE--E--CSCTTSHHHHHHH----HH------TCEEESCHH
T ss_pred hhccC-CCEEEEECC-CHHHHHHHHHHHHCCCCCc-ceEEE--E--CCCccHHHHHHHH----Hc------CCEEeCChH
Confidence 34444 569999995 9999999999998874221 13544 3 56554 444322 11 133455677
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
+++++||+||++.. | +.+.++.+.+.....++.+||.++|....
T Consensus 80 e~~~~aDvVilav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~ 123 (322)
T 2izz_A 80 ETVQHSDVLFLAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVTI 123 (322)
T ss_dssp HHHHHCSEEEECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred HHhccCCEEEEEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence 88899999999863 1 23445555666554578889888887653
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00026 Score=68.55 Aligned_cols=120 Identities=12% Similarity=0.017 Sum_probs=72.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC---CcceEEEecCccccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---LLREVKIGINPYELF 170 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~---~~~~v~i~~~~~eal 170 (398)
..++||+|||| |.+|..++..|+..|. +|.+ + .+++.++....+=.....+ +...+..++ +.+++
T Consensus 17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~-----~V~l--~---~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 84 (318)
T 3hwr_A 17 FQGMKVAIMGA-GAVGCYYGGMLARAGH-----EVIL--I---ARPQHVQAIEATGLRLETQSFDEQVKVSASS-DPSAV 84 (318)
T ss_dssp ---CEEEEESC-SHHHHHHHHHHHHTTC-----EEEE--E---CCHHHHHHHHHHCEEEECSSCEEEECCEEES-CGGGG
T ss_pred ccCCcEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E---EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeC-CHHHc
Confidence 34689999995 9999999999998874 3655 2 3445554333220000001 011233333 45667
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEE
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig 245 (398)
+++|+||++... .-+.++.+.+..+..++.+|+.++|..+... .+.+..+ .++++
T Consensus 85 ~~~D~vilavk~----------------~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-~l~~~~~---~~vl~ 139 (318)
T 3hwr_A 85 QGADLVLFCVKS----------------TDTQSAALAMKPALAKSALVLSLQNGVENAD-TLRSLLE---QEVAA 139 (318)
T ss_dssp TTCSEEEECCCG----------------GGHHHHHHHHTTTSCTTCEEEEECSSSSHHH-HHHHHCC---SEEEE
T ss_pred CCCCEEEEEccc----------------ccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH-HHHHHcC---CcEEE
Confidence 999999998532 1235556666666568899999999988754 3445543 35554
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.3e-05 Score=74.03 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC----CCcceEEEecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~eal~ 171 (398)
|+||+|||+ |.+|..++..|+..|. +|.+ + |+++++++.....-....+ .+...+..+++..++++
T Consensus 15 M~kI~iIG~-G~mG~~la~~L~~~G~-----~V~~--~--~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGS-GAFGTALAMVLSKKCR-----EVCV--W--HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECC-SHHHHHHHHHHTTTEE-----EEEE--E--CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc
Confidence 449999995 9999999999988764 3544 3 6666666544332111000 01123555556667889
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHH----HHHhcCC-CeEEEEECCCch
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA----LNAVASR-NVKVIVVGNPCN 226 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~----i~~~a~p-~a~vIvvtNP~d 226 (398)
++|+||++... +.+.++... +..+..+ +.+||.++|-.+
T Consensus 85 ~aDvVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~ 128 (366)
T 1evy_A 85 GAEIILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 128 (366)
T ss_dssp TCSSEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred CCCEEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence 99999998531 233444444 4443335 778888888654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=69.76 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=49.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+++||+||| +|.+|..++..|+..|. +|.+ + |+++++++... +. .+...++..+++++|
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~l~----~~------g~~~~~~~~e~~~~a 88 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGY-----ALQV--W--NRTPARAASLA----AL------GATIHEQARAAARDA 88 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHH----TT------TCEEESSHHHHHTTC
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCC-----eEEE--E--cCCHHHHHHHH----HC------CCEeeCCHHHHHhcC
Confidence 3467999999 59999999999998874 3543 3 67766655332 11 134556778889999
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|+||++..
T Consensus 89 DvVi~~vp 96 (320)
T 4dll_A 89 DIVVSMLE 96 (320)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 99999853
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=75.58 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC----------cceEEEec
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~ 164 (398)
-.|||+||| +|.||..++..|+..|. +|.+ + |+++++++...........+- ..+++.++
T Consensus 7 ~~~~I~VIG-~G~vG~~lA~~la~~G~-----~V~~--~--d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~tt 76 (478)
T 2y0c_A 7 GSMNLTIIG-SGSVGLVTGACLADIGH-----DVFC--L--DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFST 76 (478)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEEC-cCHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEEC
Confidence 368999999 59999999999999875 3543 3 677776664432100000000 12466777
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+..+++++||+||++...|.+... .. +...+.++++.|.++..++.+|++-|
T Consensus 77 d~~~a~~~aDvviiaVptp~~~~~-~~-----dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 77 DIEAAVAHGDVQFIAVGTPPDEDG-SA-----DLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp CHHHHHHHCSEEEECCCCCBCTTS-SB-----CCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred CHHHHhhcCCEEEEEeCCCcccCC-Cc-----cHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 666889999999999776632211 11 22344555555666545666665554
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=71.99 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCC--CCceEEEecccccchh-----hHHHHHHHHhhhcC----CCcceEEEec
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSLF----PLLREVKIGI 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~--~~~i~L~L~d~D~~~~-----~l~g~a~DL~d~~~----~~~~~v~i~~ 164 (398)
++||+|||+ |.+|..++..|+..+.... ..+|.+ + |++++ .++....+-....+ .+...+..++
T Consensus 8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~--~--~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTM--W--VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEE--E--CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE--E--EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 469999995 9999999999998762110 012443 3 55544 44433221100000 0112355555
Q ss_pred CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+..+++++||+||++... +.+.++.+.+..+..++.+|+.++|-.+
T Consensus 83 ~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 83 DVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp SHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred CHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 666788999999998531 1345555666665557889999998543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.3e-05 Score=66.68 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=65.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||.|+||+|++|++++..|+..|. .|.+ ++++.++++.. .... .. ....+.....+++.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~~----~~~~-~~-~~~D~~d~~~~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-----EVTA----IVRNAGKITQT----HKDI-NI-LQKDIFDLTLSDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCSHHHHHH----CSSS-EE-EECCGGGCCHHHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-----EEEE----EEcCchhhhhc----cCCC-eE-EeccccChhhhhhcCCCEE
Confidence 5899999999999999999999874 2443 25665554322 1100 00 0111111112788999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|.++|.+... ...|....+.+.+.+++. ....+|+++--
T Consensus 66 i~~ag~~~~~-------~~~~~~~~~~l~~a~~~~--~~~~~v~~SS~ 104 (221)
T 3ew7_A 66 VDAYGISPDE-------AEKHVTSLDHLISVLNGT--VSPRLLVVGGA 104 (221)
T ss_dssp EECCCSSTTT-------TTSHHHHHHHHHHHHCSC--CSSEEEEECCC
T ss_pred EECCcCCccc-------cchHHHHHHHHHHHHHhc--CCceEEEEecc
Confidence 9999875321 233677778888888774 35667766643
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00037 Score=65.67 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+|||+ |.+|..++..|.. +. ++.+ + |++.++++..... . +.... ..++++++|+
T Consensus 1 M~~i~iiG~-G~~G~~~a~~l~~-g~-----~V~~--~--~~~~~~~~~~~~~----g------~~~~~-~~~~~~~~D~ 58 (289)
T 2cvz_A 1 MEKVAFIGL-GAMGYPMAGHLAR-RF-----PTLV--W--NRTFEKALRHQEE----F------GSEAV-PLERVAEARV 58 (289)
T ss_dssp -CCEEEECC-STTHHHHHHHHHT-TS-----CEEE--E--CSSTHHHHHHHHH----H------CCEEC-CGGGGGGCSE
T ss_pred CCeEEEEcc-cHHHHHHHHHHhC-CC-----eEEE--E--eCCHHHHHHHHHC----C------CcccC-HHHHHhCCCE
Confidence 468999995 9999999999988 64 3544 3 6666665543321 1 11223 5677889999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
||++...+ ..+.++.+.+.+...++.+|+..+|...
T Consensus 59 vi~~v~~~---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~~ 94 (289)
T 2cvz_A 59 IFTCLPTT---------------REVYEVAEALYPYLREGTYWVDATSGEP 94 (289)
T ss_dssp EEECCSSH---------------HHHHHHHHHHTTTCCTTEEEEECSCCCH
T ss_pred EEEeCCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 99985422 1233344555544357888888887643
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=2.7e-05 Score=70.55 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=64.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-------Cc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NP 166 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~ 166 (398)
.+|+||.|+||+|++|++++..|+..|. .|.+ ++++.+.+.. +. ..+.+.. +.
T Consensus 2 ~~m~~ilItGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~----~~-------~~~~~~~~Dl~d~~~~ 61 (227)
T 3dhn_A 2 EKVKKIVLIGASGFVGSALLNEALNRGF-----EVTA----VVRHPEKIKI----EN-------EHLKVKKADVSSLDEV 61 (227)
T ss_dssp -CCCEEEEETCCHHHHHHHHHHHHTTTC-----EEEE----ECSCGGGCCC----CC-------TTEEEECCCTTCHHHH
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE----EEcCcccchh----cc-------CceEEEEecCCCHHHH
Confidence 3478999999999999999999998873 2443 2555443221 00 1122111 12
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.++++++|+||.++|... +..+++..|......+.+.+.+. +. ..+|.+|
T Consensus 62 ~~~~~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~S 111 (227)
T 3dhn_A 62 CEVCKGADAVISAFNPGW----NNPDIYDETIKVYLTIIDGVKKA-GV-NRFLMVG 111 (227)
T ss_dssp HHHHTTCSEEEECCCC----------CCSHHHHHHHHHHHHHHHT-TC-SEEEEEC
T ss_pred HHHhcCCCEEEEeCcCCC----CChhHHHHHHHHHHHHHHHHHHh-CC-CEEEEeC
Confidence 467889999999987542 22235666888888888888885 33 3566555
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00061 Score=64.56 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+||| +|.+|..++..|...+. +. .|.+ + |+++++++... + . ... ...+++..++++++|
T Consensus 5 ~~~~I~iIG-~G~mG~~~a~~l~~~g~-~~--~V~~--~--d~~~~~~~~~~-~---~--g~~--~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 5 EEKTIYIAG-LGLIGASLALGIKRDHP-HY--KIVG--Y--NRSDRSRDIAL-E---R--GIV--DEATADFKVFAALAD 68 (290)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCT-TS--EEEE--E--CSSHHHHHHHH-H---T--TSC--SEEESCTTTTGGGCS
T ss_pred ccceEEEEe-eCHHHHHHHHHHHhCCC-Cc--EEEE--E--cCCHHHHHHHH-H---c--CCc--ccccCCHHHhhcCCC
Confidence 357999999 59999999999988753 11 2433 3 66666655321 1 1 110 123445667889999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh-cCCCeEEEEECCCc
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNPC 225 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP~ 225 (398)
+||++... +...++.+.+..+ ..++.+|+.++|--
T Consensus 69 vVilavp~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~~ 104 (290)
T 3b1f_A 69 VIILAVPI----------------KKTIDFIKILADLDLKEDVIITDAGSTK 104 (290)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHTSCCCTTCEEECCCSCH
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhcCCCCCCEEEECCCCc
Confidence 99998531 2335666666664 45788888777753
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0007 Score=63.81 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-CCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dAD 174 (398)
|+||+||| +|.+|..++..|...+. . ..|.+ + |+++++++. +.++ .. .....++..++++ +||
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g~-~--~~V~~--~--d~~~~~~~~-~~~~-----g~--~~~~~~~~~~~~~~~aD 64 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSGF-K--GKIYG--Y--DINPESISK-AVDL-----GI--IDEGTTSIAKVEDFSPD 64 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTC-C--SEEEE--E--CSCHHHHHH-HHHT-----TS--CSEEESCGGGGGGTCCS
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcCC-C--cEEEE--E--eCCHHHHHH-HHHC-----CC--cccccCCHHHHhcCCCC
Confidence 46999999 59999999999998774 1 12433 3 677666542 2221 11 1123345567888 999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+||++... +...++.+.+..+..++++|++++|-
T Consensus 65 vVilavp~----------------~~~~~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 65 FVMLSSPV----------------RTFREIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 99998531 12334444454443578888887764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00042 Score=66.17 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--------cCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--------INP 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--------~~~ 166 (398)
+.++|.|+||+|++|++++..|+..|. .|.+ .+++.+.++.....+.+.. + .++.+. ...
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~ 77 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGY-----KVRG----TARSASKLANLQKRWDAKY-P--GRFETAVVEDMLKQGAY 77 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHS-T--TTEEEEECSCTTSTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCcccHHHHHHHhhccC-C--CceEEEEecCCcChHHH
Confidence 357999999999999999999998774 2433 2555555443333332111 1 112111 112
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+++++.|+||.+++.... +.+..+.+..|+.-...+.+.+.+. .....+|++|-
T Consensus 78 ~~~~~~~d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~iv~~SS 132 (342)
T 1y1p_A 78 DEVIKGAAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAAT-PSVKRFVLTSS 132 (342)
T ss_dssp TTTTTTCSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTC-TTCCEEEEECC
T ss_pred HHHHcCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEecc
Confidence 3556789999999886532 2345567888988888888887753 23356776664
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=65.84 Aligned_cols=104 Identities=12% Similarity=0.012 Sum_probs=65.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||.|+||+|++|++++..|+..|. .|.+ ++++.+.+.. +....... ....+.....+++.++|+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~----~~~~~~~~-~~~D~~d~~~~~~~~~d~v 66 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-----EVLA----VVRDPQKAAD----RLGATVAT-LVKEPLVLTEADLDSVDAV 66 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHH----HTCTTSEE-EECCGGGCCHHHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-----EEEE----EEeccccccc----ccCCCceE-EecccccccHhhcccCCEE
Confidence 5899999999999999999999874 2443 3566555432 21111000 0011111112778999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|.++|....+.. ...|....+.+.+.+.+. . ..+|+++
T Consensus 67 i~~ag~~~~~~~-----~~~n~~~~~~l~~a~~~~--~-~~~v~~S 104 (224)
T 3h2s_A 67 VDALSVPWGSGR-----GYLHLDFATHLVSLLRNS--D-TLAVFIL 104 (224)
T ss_dssp EECCCCCTTSSC-----THHHHHHHHHHHHTCTTC--C-CEEEEEC
T ss_pred EECCccCCCcch-----hhHHHHHHHHHHHHHHHc--C-CcEEEEe
Confidence 999887532222 345778888888888774 3 6777775
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.5e-05 Score=71.36 Aligned_cols=69 Identities=12% Similarity=0.303 Sum_probs=50.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
..+|+||+||| +|.+|..++..|+..|. +|.+ + |+++++++.... . .+...++..+++++
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~-----~V~~--~--dr~~~~~~~l~~----~------g~~~~~~~~~~~~~ 77 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGF-----KVTV--W--NRTLSKCDELVE----H------GASVCESPAEVIKK 77 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSSGGGGHHHHH----T------TCEECSSHHHHHHH
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHH----C------CCeEcCCHHHHHHh
Confidence 34578999999 59999999999999875 3543 3 677676654331 1 12345667788999
Q ss_pred CcEEEEeCC
Q 015897 173 AEWALLIGA 181 (398)
Q Consensus 173 ADiViitag 181 (398)
||+||++..
T Consensus 78 aDvvi~~vp 86 (310)
T 3doj_A 78 CKYTIAMLS 86 (310)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEEcC
Confidence 999999753
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0001 Score=70.08 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+||| +|.+|..++..|+..|. +|.+ + |+++++++..... .+...++..+++++||+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~~~~~----------g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-----DVTV--W--NRNPAKCAPLVAL----------GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-----CEEE--E--CSSGGGGHHHHHH----------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHHC----------CCeecCCHHHHHHcCCE
Confidence 56899999 59999999999998874 3554 3 6777766543321 12345567788899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||++..
T Consensus 61 vi~~v~ 66 (287)
T 3pdu_A 61 TIAMLA 66 (287)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 999853
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=70.64 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=66.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+++||.|+||+|++|++++..|+..|. .|.. .+++... .... ....++.-.....++++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~----~~r~~~~--------~~~~-~~~~Dl~d~~~~~~~~~~~ 78 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-----TVRG----FDLRPSG--------TGGE-EVVGSLEDGQALSDAIMGV 78 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-----CEEE----EESSCCS--------SCCS-EEESCTTCHHHHHHHHTTC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-----EEEE----EeCCCCC--------CCcc-EEecCcCCHHHHHHHHhCC
Confidence 3467999999999999999999999874 2433 2444332 0000 0000110001124567899
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|+||.+++..........+.+..|+.-...+.+.+.+. +. ..+|.+|-
T Consensus 79 d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~-~~~V~~SS 126 (347)
T 4id9_A 79 SAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAA-GV-RRFVFASS 126 (347)
T ss_dssp SEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHT-TC-SEEEEEEE
T ss_pred CEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEECC
Confidence 99999988654333334677888988889999988874 33 35555553
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00016 Score=68.88 Aligned_cols=96 Identities=9% Similarity=0.106 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+||| +|.+|..++..|...+. +|.+ + |+++++++... +. .+....+..+.++++|
T Consensus 3 ~~~~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~~----~~------g~~~~~~~~~~~~~~D 62 (301)
T 3cky_A 3 KSIKIGFIG-LGAMGKPMAINLLKEGV-----TVYA--F--DLMEANVAAVV----AQ------GAQACENNQKVAAASD 62 (301)
T ss_dssp -CCEEEEEC-CCTTHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHH----TT------TCEECSSHHHHHHHCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHH----HC------CCeecCCHHHHHhCCC
Confidence 467999999 59999999999988764 3543 3 67766655322 11 1234455667788999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHH---HHHHhcCCCeEEEEECCCc
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGK---ALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~---~i~~~a~p~a~vIvvtNP~ 225 (398)
+||++...+ ..++++.. .+.....++.+||..+|-.
T Consensus 63 ~vi~~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 63 IIFTSLPNA---------------GIVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp EEEECCSSH---------------HHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred EEEEECCCH---------------HHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 999985322 12223332 3333335677777777654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=8.3e-05 Score=67.31 Aligned_cols=95 Identities=23% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEEEEcCCCchHHHHHHHHH-hcCcCCCCCceEEEecccccchh-hHHHHHHHHhhhcCCCcceEE--Ee--cCcccccC
Q 015897 98 NIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVK--IG--INPYELFE 171 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~i~L~L~d~D~~~~-~l~g~a~DL~d~~~~~~~~v~--i~--~~~~eal~ 171 (398)
+|.|+||+|.+|.+++..|+ ..|. .|.+ .+++++ +++..+. . . +...-+. ++ .+..++++
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~-----~V~~----~~r~~~~~~~~~~~--~--~-~~~~~~~~D~~d~~~~~~~~~ 72 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDM-----HITL----YGRQLKTRIPPEII--D--H-ERVTVIEGSFQNPGXLEQAVT 72 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCC-----EEEE----EESSHHHHSCHHHH--T--S-TTEEEEECCTTCHHHHHHHHT
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCc-----eEEE----EecCccccchhhcc--C--C-CceEEEECCCCCHHHHHHHHc
Confidence 49999999999999999999 6664 2443 256655 4432220 0 1 1000011 11 11245778
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|+||.++|.. |.. .+.+.+.+++. + .+.+|+++
T Consensus 73 ~~d~vv~~ag~~-------------n~~-~~~~~~~~~~~-~-~~~iv~iS 107 (221)
T 3r6d_A 73 NAEVVFVGAMES-------------GSD-MASIVKALSRX-N-IRRVIGVS 107 (221)
T ss_dssp TCSEEEESCCCC-------------HHH-HHHHHHHHHHT-T-CCEEEEEE
T ss_pred CCCEEEEcCCCC-------------Chh-HHHHHHHHHhc-C-CCeEEEEe
Confidence 999999998743 344 77777777774 2 34566555
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00021 Score=68.42 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+||| .|.+|..++..|+..|. +|.+ + |+++++++.... . .+...++..++++ ||+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~-----~V~~--~--dr~~~~~~~~~~----~------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPG-----GVTV--Y--DIRIEAMTPLAE----A------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTT-----CEEE--E--CSSTTTSHHHHH----T------TCEECSSHHHHTT-SSE
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHH----C------CCEEcCCHHHHHh-CCE
Confidence 46999999 59999999999998874 3544 3 667666553321 1 1334556677777 999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||++...+ +.++++.+.+.+...++.+||..++
T Consensus 74 vi~~vp~~---------------~~~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 74 IHITVLDD---------------AQVREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp EEECCSSH---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred EEEECCCh---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 99985421 2334444555554456777776665
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00062 Score=61.89 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.++||+||| +|.+|+.++..|...+. ++.+ + |++++ ++++||
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g~-----~V~~--~--~~~~~----------------------------~~~~aD 59 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAGH-----EVTY--Y--GSKDQ----------------------------ATTLGE 59 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CTTCC----------------------------CSSCCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--cCCHH----------------------------HhccCC
Confidence 357999999 59999999999998774 3543 3 44433 668999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+||++.. .+.++++.+.+..+.. +.+++.++|+.+
T Consensus 60 ~vi~av~----------------~~~~~~v~~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 60 IVIMAVP----------------YPALAALAKQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp EEEECSC----------------HHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred EEEEcCC----------------cHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence 9999853 1234445555554434 889999999765
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00029 Score=67.03 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||.|+||+|++|++++..|+..|. .|.. ++++..... +.... ....++. .....++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~-----~~~~~-~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-----TPII----LTRSIGNKA-----INDYE-YRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCCC----------CCE-EEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE----EeCCCCccc-----CCceE-EEEcccc-HHHHHHhhcCCCE
Confidence 36899999999999999999999874 2432 244422221 11111 0111222 2234567889999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+++..... +..+....|+.-...+.+.+.+. +.. .+|.+|
T Consensus 66 Vih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~-~~~-r~v~~S 108 (311)
T 3m2p_A 66 VVHLAATRGSQ--GKISEFHDNEILTQNLYDACYEN-NIS-NIVYAS 108 (311)
T ss_dssp EEECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred EEEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 99998865322 44556788988899999998885 333 455554
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00015 Score=68.91 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=60.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| +|.+|..++..|+..|. +|.+ + |+++++++..... .+...++..+++++||+|
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~~~~~----------g~~~~~~~~~~~~~aDvv 61 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGC-----SVTI--W--NRSPEKAEELAAL----------GAERAATPCEVVESCPVT 61 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSSGGGGHHHHHT----------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHHC----------CCeecCCHHHHHhcCCEE
Confidence 6999999 59999999999998874 3543 3 6776766533321 133456677888999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHH---HHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~---~~i~~~a~p~a~vIvvtN 223 (398)
|++...+ ..++++. +.+.+...++.+||..++
T Consensus 62 i~~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 62 FAMLADP---------------AAAEEVCFGKHGVLEGIGEGRGYVDMST 96 (287)
T ss_dssp EECCSSH---------------HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred EEEcCCH---------------HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence 9985321 2233443 444444356777777765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00036 Score=66.93 Aligned_cols=68 Identities=7% Similarity=-0.027 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+||| +|.+|..++..|+..|. +|.+ + |+++++++.... .. . ....++..+++++||
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~~~~----~g--~---~~~~~~~~e~~~~aD 66 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGL-----STWG--A--DLNPQACANLLA----EG--A---CGAAASAREFAGVVD 66 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHH----TT--C---SEEESSSTTTTTTCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHHHH----cC--C---ccccCCHHHHHhcCC
Confidence 357999999 59999999999999875 3543 3 677776654332 11 1 112566788899999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||++..
T Consensus 67 vvi~~vp 73 (303)
T 3g0o_A 67 ALVILVV 73 (303)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999854
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00039 Score=70.78 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=71.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH-----------HH-hhhcCCCcceEE
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------EL-EDSLFPLLREVK 161 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~-----------DL-~d~~~~~~~~v~ 161 (398)
.+|.+|+||| .|.||..++-.|+..|. .+. ++|+|+++.+..-. |+ .+.. ...+.+
T Consensus 19 ~~m~~IaViG-lGYVGLp~A~~~A~~G~-----~V~----g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~--~~g~l~ 86 (444)
T 3vtf_A 19 SHMASLSVLG-LGYVGVVHAVGFALLGH-----RVV----GYDVNPSIVERLRAGRPHIYEPGLEEALGRAL--SSGRLS 86 (444)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTC-----EEE----EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH--HTTCEE
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCC-----cEE----EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHH--HcCCee
Confidence 3578999999 69999999999998775 232 24677777654321 11 1110 013567
Q ss_pred EecCcccccCCCcEEEEeCCCCCCC-CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEE-ECCCch
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCN 226 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~-g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d 226 (398)
.+++..+++++||++|++.+.|-.+ |.--+..+ ....+.+++.++.. +++.+||+ -|=|..
T Consensus 87 ~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~-~~g~lVV~eSTVppG 149 (444)
T 3vtf_A 87 FAESAEEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAK-GRWHLVVVKSTVPPG 149 (444)
T ss_dssp ECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHH-CSCCEEEECSCCCTT
T ss_pred EEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhc-CCCeEEEEeCCCCCc
Confidence 7888889999999999998887433 22212222 24556677777654 33334333 333443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00077 Score=65.36 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc-ccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-LFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e-al~dAD 174 (398)
++||+||| +|.+|..++..|...|... .|.+ .|++++.++. +.++ ... ....++..+ ++++||
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~~---~V~~----~dr~~~~~~~-a~~~-----G~~--~~~~~~~~~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFKG---KIYG----YDINPESISK-AVDL-----GII--DEGTTSIAKVEDFSPD 96 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCCS---EEEE----ECSCHHHHHH-HHHT-----TSC--SEEESCTTGGGGGCCS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCCC---EEEE----EECCHHHHHH-HHHC-----CCc--chhcCCHHHHhhccCC
Confidence 36999999 5999999999999988621 2443 3677666553 2221 110 123455566 799999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||++.... .+.++.+.+..+..++++|+.++.
T Consensus 97 vVilavp~~----------------~~~~vl~~l~~~l~~~~iv~d~~S 129 (314)
T 3ggo_A 97 FVMLSSPVR----------------TFREIAKKLSYILSEDATVTDQGS 129 (314)
T ss_dssp EEEECSCGG----------------GHHHHHHHHHHHSCTTCEEEECCS
T ss_pred EEEEeCCHH----------------HHHHHHHHHhhccCCCcEEEECCC
Confidence 999985321 123344445554467888877664
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00073 Score=63.56 Aligned_cols=92 Identities=22% Similarity=0.137 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|.+|..++..|...+. .|.+ .|+++++++... + . .. ......+..+. +++|+|
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~----~~~~~~~~~~~~-~---~--g~--~~~~~~~~~~~-~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRGH-----YLIG----VSRQQSTCEKAV-E---R--QL--VDEAGQDLSLL-QTAKII 61 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHH-H---T--TS--CSEEESCGGGG-TTCSEE
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHH-h---C--CC--CccccCCHHHh-CCCCEE
Confidence 5899999 59999999999998764 2443 367766665322 2 1 11 11234455566 999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|++.. .+.+.++.+.+.....++.+|+.++|
T Consensus 62 i~av~----------------~~~~~~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 62 FLCTP----------------IQLILPTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp EECSC----------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred EEECC----------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 99853 12455566666665457888888755
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00061 Score=64.61 Aligned_cols=94 Identities=12% Similarity=0.208 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+|||++|.+|..++..|...+. +|.+ + |+++++++... +. . +.. ++..+++++||+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~-----~V~~--~--~r~~~~~~~~~-~~-----g----~~~-~~~~~~~~~aDv 70 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH-----HLAA--I--EIAPEGRDRLQ-GM-----G----IPL-TDGDGWIDEADV 70 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS-----EEEE--E--CCSHHHHHHHH-HT-----T----CCC-CCSSGGGGTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHH-hc-----C----CCc-CCHHHHhcCCCE
Confidence 46999999449999999999998874 3543 3 67766655332 11 1 112 256788899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
||++... ..+.++.+.+.....++.+|+..++..
T Consensus 71 Vi~av~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 71 VVLALPD----------------NIIEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp EEECSCH----------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred EEEcCCc----------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 9998531 224566666766545788887777654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00039 Score=67.60 Aligned_cols=102 Identities=13% Similarity=-0.010 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh----hcCCCcceE-EEecCccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SLFPLLREV-KIGINPYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d----~~~~~~~~v-~i~~~~~eal 170 (398)
++||+|||+ |.+|..++..|...+. +|.+ +|+++++++.......- ........+ ...++..+++
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQ-----SVLA----WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV 73 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH
Confidence 579999995 9999999999988764 3544 36776666544332100 000000111 2344555668
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+++|+||++.... ...++.+.+.....++..|+...|
T Consensus 74 ~~~D~vi~~v~~~----------------~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 74 KDADVILIVVPAI----------------HHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp TTCSEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEESSC
T ss_pred hcCCEEEEeCCch----------------HHHHHHHHHHHhCCCCCEEEEcCC
Confidence 9999999986422 113445556555456776666634
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00017 Score=69.19 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--c---Ccccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYEL 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~ea 169 (398)
.+|||.|+||+|++|++++..|+..|. .|.. ++++...++ ++.+.. . .+... + ...++
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~----~l~~~~--~--~~~~~Dl~d~~~~~~~ 74 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH-----DLVL----IHRPSSQIQ----RLAYLE--P--ECRVAEMLDHAGLERA 74 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSCGG----GGGGGC--C--EEEECCTTCHHHHHHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EecChHhhh----hhccCC--e--EEEEecCCCHHHHHHH
Confidence 356999999999999999999998763 2433 244433321 122110 0 11111 1 12356
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++++|+||.+++.......+..+.+..|+.-...+.+.+.+. + -..+|.+|-
T Consensus 75 ~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~~v~~SS 126 (342)
T 2x4g_A 75 LRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-R-VPRILYVGS 126 (342)
T ss_dssp TTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-T-CSCEEEECC
T ss_pred HcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-C-CCeEEEECC
Confidence 789999999988543222344567888999889999888885 2 345666664
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00028 Score=67.71 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC------c
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------P 166 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~ 166 (398)
..+++|.|+||+|+||++++..|+..|. .|.+ + +++.+.......++.... +. .+.+. .| .
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~~--~~~~~~~Dl~d~~~~ 70 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGY-----DVVI--A--DNLVNSKREAIARIEKIT-GK--TPAFHETDVSDERAL 70 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--CCCSSSCTHHHHHHHHHH-SC--CCEEECCCTTCHHHH
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCC-----cEEE--E--ecCCcchHHHHHHHHhhc-CC--CceEEEeecCCHHHH
Confidence 3457999999999999999999999874 2433 2 443333322333333211 10 11111 11 1
Q ss_pred ccccC--CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ~eal~--dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.++++ +.|+||.+++..... .....+.+..|+.-...+.+.+.+. + .+.+|++|
T Consensus 71 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 128 (341)
T 3enk_A 71 ARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-A-VKRIVFSS 128 (341)
T ss_dssp HHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEEE
T ss_pred HHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-C-CCEEEEEe
Confidence 23444 799999998864211 1123456778988888999988885 3 34556555
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.001 Score=61.96 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=59.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|||+ |.+|..++..|+..+. . .+.+ .|+++++++.....+ . +.+..+..+++ ++|+|
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~-~---~v~~----~~r~~~~~~~~~~~~-----g----~~~~~~~~~~~-~~D~v 61 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGG-Y---RIYI----ANRGAEKRERLEKEL-----G----VETSATLPELH-SDDVL 61 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS-C---EEEE----ECSSHHHHHHHHHHT-----C----CEEESSCCCCC-TTSEE
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC-C---eEEE----ECCCHHHHHHHHHhc-----C----CEEeCCHHHHh-cCCEE
Confidence 58999995 9999999999988763 1 3544 367777665443321 1 23445566778 99999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
|++.. + ..+.++.+.+.. . +.+|+.++|....
T Consensus 62 i~~v~-~---------------~~~~~v~~~l~~--~-~~ivv~~~~g~~~ 93 (263)
T 1yqg_A 62 ILAVK-P---------------QDMEAACKNIRT--N-GALVLSVAAGLSV 93 (263)
T ss_dssp EECSC-H---------------HHHHHHHTTCCC--T-TCEEEECCTTCCH
T ss_pred EEEeC-c---------------hhHHHHHHHhcc--C-CCEEEEecCCCCH
Confidence 99853 1 223344433332 2 6677777676654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00016 Score=69.87 Aligned_cols=176 Identities=13% Similarity=-0.021 Sum_probs=91.5
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEe-cC---
Q 015897 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIG-IN--- 165 (398)
Q Consensus 91 ~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~-~~--- 165 (398)
.|..+++||.|+||+|++|++++..|+..|. .|.. + +++.........++....... ...+.+. .|
T Consensus 20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 90 (351)
T 3ruf_A 20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-----VVIG--L--DNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD 90 (351)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC
T ss_pred hCCCCCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCCCCchhhhhhhhhccccccCCceEEEEccCCC
Confidence 4555678999999999999999999998874 2432 2 333222222222232210000 0112211 11
Q ss_pred ---cccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH----HHHHHC
Q 015897 166 ---PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNA 236 (398)
Q Consensus 166 ---~~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~----~~~k~~ 236 (398)
..++++++|+||.+++....+ ..+..+....|+.-...+.+.+.+. +.. .+|.+|-.. +... .+.+..
T Consensus 91 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~-~~v~~SS~~-vyg~~~~~~~~E~~ 167 (351)
T 3ruf_A 91 LTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQ-SFTYAASSS-TYGDHPALPKVEEN 167 (351)
T ss_dssp HHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEEEGG-GGTTCCCSSBCTTC
T ss_pred HHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEecHH-hcCCCCCCCCccCC
Confidence 245678999999998853211 1233456788888899999988885 333 455554211 1000 000000
Q ss_pred CCCCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEecc
Q 015897 237 PSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (398)
Q Consensus 237 ~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H 279 (398)
+ ..+...-+.+-+...++-..+++..|++..-++...|+|..
T Consensus 168 ~-~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 209 (351)
T 3ruf_A 168 I-GNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRR 209 (351)
T ss_dssp C-CCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTT
T ss_pred C-CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcC
Confidence 0 00000001112223344444556668877777665678854
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00035 Score=71.22 Aligned_cols=112 Identities=12% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC----------CcceEEEecC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~----------~~~~v~i~~~ 165 (398)
..+|+||| +|.+|..+|..|+..|. ++.. + |+++++++...........+ ....++.+++
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~-----~V~~--~--D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd 77 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGH-----EVVC--V--DKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTD 77 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESC
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECC
Confidence 57999999 59999999999999875 3443 3 66767765443210000000 0124677777
Q ss_pred cccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..+++++||+||++.+.|...+....| ...++++++.|.++..++.+||.-|
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~D-----l~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHAD-----LSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCBC-----THHHHHHHHHHHHSCCSCCEEEECS
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCcc-----HHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 779999999999997766432111222 2334444455555544566655544
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0003 Score=70.54 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=77.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCC---CCceEEEecccccchhhHHHHHHHHh--hhcC------CCcceEE
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGP---DQPIALKLLGSERSLQALEGVAMELE--DSLF------PLLREVK 161 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~---~~~i~L~L~d~D~~~~~l~g~a~DL~--d~~~------~~~~~v~ 161 (398)
..++.||+|||| |.-|+++|..|+.++.-.. +.+|.|.-.+.|.+.+.+. ..++ |... .+..++.
T Consensus 31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~---e~in~~~~N~~YLpgv~Lp~~i~ 106 (391)
T 4fgw_A 31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLT---EIINTRHQNVKYLPGITLPDNLV 106 (391)
T ss_dssp --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHH---HHHTTTCCBTTTBTTCCCCSSEE
T ss_pred cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHH---HHHHhcCcCcccCCCCcCCCCcE
Confidence 456789999995 9999999999998652100 0125543232222223322 2222 2211 1234688
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC-------chhHHHHHHH
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP-------CNTNALICLK 234 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP-------~d~~t~~~~k 234 (398)
.++|..+++++||+||+..- .+.++++.+++..+..++..+|.++.= ..++..++.+
T Consensus 107 ~t~dl~~al~~ad~ii~avP----------------s~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e 170 (391)
T 4fgw_A 107 ANPDLIDSVKDVDIIVFNIP----------------HQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITE 170 (391)
T ss_dssp EESCHHHHHTTCSEEEECSC----------------GGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHH
T ss_pred EeCCHHHHHhcCCEEEEECC----------------hhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHH
Confidence 88888899999999999742 356788888888775677777776533 2356677766
Q ss_pred HC
Q 015897 235 NA 236 (398)
Q Consensus 235 ~~ 236 (398)
..
T Consensus 171 ~~ 172 (391)
T 4fgw_A 171 EL 172 (391)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00038 Score=67.10 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc--chhhHHHHHHHHhhhcC--CCcceEEEec--Cccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLF--PLLREVKIGI--NPYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~--~~~~l~g~a~DL~d~~~--~~~~~v~i~~--~~~eal 170 (398)
|||+|||+ |.+|..++..|+..+. +|.+ + |+ ++++++....+-....+ .+ ..+..++ +..+++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 69 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRI--W--GTEFDTEILKSISAGREHPRLGVKL-NGVEIFWPEQLEKCL 69 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEE--E--CCGGGHHHHHHHHTTCCBTTTTBCC-CSEEEECGGGHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--EccCCHHHHHHHHHhCcCcccCccc-cceEEecHHhHHHHH
Confidence 58999995 9999999999998774 3544 3 56 66665533221000000 00 1234444 445678
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+++|+||++...+ .+.++.+.+.. ..++.+||.++|-.
T Consensus 70 ~~~D~vi~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 70 ENAEVVLLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp TTCSEEEECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred hcCCEEEEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 9999999986421 12334444444 35788888888876
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00042 Score=66.95 Aligned_cols=84 Identities=10% Similarity=-0.062 Sum_probs=45.2
Q ss_pred ceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc--hhhHHHHHHHHhhh
Q 015897 75 YGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDS 152 (398)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~--~~~l~g~a~DL~d~ 152 (398)
++.||-.++.+. .+..+++||+||| +|.+|..++..|+..|. . +|.+ + |++ +++.+. +.+.
T Consensus 7 ~~~~~~~~~~~~----~~~~~~~~I~iIG-~G~mG~~~A~~L~~~G~-~---~V~~--~--dr~~~~~~~~~----~~~~ 69 (312)
T 3qsg_A 7 HSSGVDLGTENL----YFQSNAMKLGFIG-FGEAASAIASGLRQAGA-I---DMAA--Y--DAASAESWRPR----AEEL 69 (312)
T ss_dssp ----------------------CEEEEEC-CSHHHHHHHHHHHHHSC-C---EEEE--E--CSSCHHHHHHH----HHHT
T ss_pred cccccccCcccc----cccCCCCEEEEEC-ccHHHHHHHHHHHHCCC-C---eEEE--E--cCCCCHHHHHH----HHHC
Confidence 345554444332 2234578999999 59999999999998874 1 2443 4 554 344332 1211
Q ss_pred cCCCcceEEEecCcccccCCCcEEEEeCC
Q 015897 153 LFPLLREVKIGINPYELFEDAEWALLIGA 181 (398)
Q Consensus 153 ~~~~~~~v~i~~~~~eal~dADiViitag 181 (398)
.+...++..+++++||+||++..
T Consensus 70 ------g~~~~~~~~e~~~~aDvVi~~vp 92 (312)
T 3qsg_A 70 ------GVSCKASVAEVAGECDVIFSLVT 92 (312)
T ss_dssp ------TCEECSCHHHHHHHCSEEEECSC
T ss_pred ------CCEEeCCHHHHHhcCCEEEEecC
Confidence 12344567788999999999854
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00021 Score=73.64 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
+|||.|+||+|++|++++..|+..|. .|.. ++++....+. .. ..+.....++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-----~V~~----l~R~~~~~~~-------v~------~d~~~~~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-----EVIQ----LVRKEPKPGK-------RF------WDPLNPASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESSSCCTTC-------EE------CCTTSCCTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCCCCccc-------ee------ecccchhHHhcCCCCE
Confidence 78999999999999999999998874 2432 2444333210 00 0011234678899999
Q ss_pred EEEeCCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk---~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+++.... ......++...|+.-...+++.+.+. ..-..+|.+|
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~-~~~~r~V~~S 253 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAES-TQCTTMISAS 253 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHC-SSCCEEEEEE
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhc-CCCCEEEEeC
Confidence 9999886421 12234567788988889998875553 2233566555
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00064 Score=64.56 Aligned_cols=94 Identities=11% Similarity=0.157 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||| +|.+|..++..|...+. +|.+ + |+++++++..... .+....+..++++++|+|
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--S--DRNPEAIADVIAA----------GAETASTAKAIAEQCDVI 65 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHT----------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHHHC----------CCeecCCHHHHHhCCCEE
Confidence 5999999 59999999999988764 3543 3 6776665533221 123444556778899999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHH---HHHHHhcCCCeEEEEECCCc
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~---~~i~~~a~p~a~vIvvtNP~ 225 (398)
|++...+ ..++++. +.+.+...++.+||..+|-.
T Consensus 66 i~~v~~~---------------~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 66 ITMLPNS---------------PHVKEVALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp EECCSSH---------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred EEECCCH---------------HHHHHHHhCcchHhhcCCCCCEEEECCCCC
Confidence 9986422 1223333 23333335677887777654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=70.79 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH-HhhhcCCC---cceEEEecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPL---LREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D-L~d~~~~~---~~~v~i~~~~~eal~ 171 (398)
++||+|||+ |.+|..++..|+..+. +|.+ + |++ +.++..... +.-.. +. ..++..+ ++.+++.
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~-----~V~~--~--~r~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~~~~~ 69 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGE-----AINV--L--ARG-ATLQALQTAGLRLTE-DGATHTLPVRAT-HDAAALG 69 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTC-----CEEE--E--CCH-HHHHHHHHTCEEEEE-TTEEEEECCEEE-SCHHHHC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC-----EEEE--E--ECh-HHHHHHHHCCCEEec-CCCeEEEeeeEE-CCHHHcC
Confidence 579999995 9999999999998874 3654 3 453 333322110 00000 10 0122233 3455679
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++|+||++.. ...+.++.+.+..+..++..||.+.|.+.
T Consensus 70 ~~D~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi~ 108 (335)
T 3ghy_A 70 EQDVVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGVP 108 (335)
T ss_dssp CCSEEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred CCCEEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 9999999853 23455666667665568899999999953
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00081 Score=65.16 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch---hhHHHHHHHHhhhcCCCcceEEEec-CcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKIGI-NPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~---~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~ 171 (398)
++||+||| +|.+|..++..|+..|.. +|.+ + |+++ ++.+.....+.+.. + .+ +..++++
T Consensus 24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~----~V~~--~--dr~~~~~~~~~~~~~~~~~~g------~--~~~s~~e~~~ 86 (317)
T 4ezb_A 24 MTTIAFIG-FGEAAQSIAGGLGGRNAA----RLAA--Y--DLRFNDPAASGALRARAAELG------V--EPLDDVAGIA 86 (317)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCS----EEEE--E--CGGGGCTTTHHHHHHHHHHTT------C--EEESSGGGGG
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHcCCC----eEEE--E--eCCCccccchHHHHHHHHHCC------C--CCCCHHHHHh
Confidence 36999999 599999999999988721 3443 4 5554 33333333333221 1 34 6788999
Q ss_pred CCcEEEEeCC
Q 015897 172 DAEWALLIGA 181 (398)
Q Consensus 172 dADiViitag 181 (398)
+||+||++..
T Consensus 87 ~aDvVi~avp 96 (317)
T 4ezb_A 87 CADVVLSLVV 96 (317)
T ss_dssp GCSEEEECCC
T ss_pred cCCEEEEecC
Confidence 9999999854
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=69.03 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~dADi 175 (398)
|||+|||+ |.+|..++..|+..|. +|.+ + |+++++++. +.... ........+..++.++++++|+
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~--~r~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQG--W--LRVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDL 66 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSE
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC-----CEEE--E--EcCccceee----EEEEcCCCceeeeeeeecCccccCCCCE
Confidence 58999995 9999999999998774 3544 3 455443321 22111 0000012223345678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
||++...+ .+.++.+.+..+..++.+|+..+|..+.
T Consensus 67 vi~~v~~~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 67 LLVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp EEECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEEEecHH----------------hHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 99986421 1244455566654578888888998754
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00048 Score=66.91 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dAD 174 (398)
.+||+|||+ |.+|+.++..|+..|. +|.+ + |++.++++....+-.....+- ...+..+++..+ ++++|
T Consensus 14 ~~kI~iIG~-G~mG~ala~~L~~~G~-----~V~~--~--~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aD 82 (335)
T 1z82_A 14 EMRFFVLGA-GSWGTVFAQMLHENGE-----EVIL--W--ARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKED 82 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred CCcEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence 479999995 9999999999998874 3554 3 676666665443210000000 002455555556 89999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+||++... +.+.++.+.+.. ++..||.++|..+
T Consensus 83 vVil~vk~----------------~~~~~v~~~l~~---~~~~vv~~~nGi~ 115 (335)
T 1z82_A 83 ILVIAIPV----------------QYIREHLLRLPV---KPSMVLNLSKGIE 115 (335)
T ss_dssp EEEECSCG----------------GGHHHHHTTCSS---CCSEEEECCCCCC
T ss_pred EEEEECCH----------------HHHHHHHHHhCc---CCCEEEEEeCCCC
Confidence 99998531 123333333322 5677888888643
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0024 Score=65.44 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--- 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--- 172 (398)
++||+||| +|.+|..++..|+..|. +|.+ + |++.++++....+.. . ..+..+.+..+.+++
T Consensus 5 ~~~IgvIG-~G~mG~~lA~~L~~~G~-----~V~v--~--dr~~~~~~~l~~~~~----~--~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 5 QANFGVVG-MAVMGKNLALNVESRGY-----TVAI--Y--NRTTSKTEEVFKEHQ----D--KNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp TBSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHHTT----T--SCEEECSSHHHHHHTBCS
T ss_pred CCcEEEEe-eHHHHHHHHHHHHhCCC-----EEEE--E--cCCHHHHHHHHHhCc----C--CCeEEeCCHHHHHhhccC
Confidence 36899999 59999999999998875 3554 3 677777665443321 0 124444555555555
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHH
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~ 235 (398)
+|+||++...+ +.+.++.+.+.....++.+||..+|-....+..+.+.
T Consensus 69 aDvVilavp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~ 116 (474)
T 2iz1_A 69 PRRIMLMVQAG---------------AATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAE 116 (474)
T ss_dssp SCEEEECCCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHH
T ss_pred CCEEEEEccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH
Confidence 99999985321 2344445556655457888888888764444333343
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.001 Score=68.32 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--- 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--- 172 (398)
.+||+||| +|.+|..++..|+..|. +|.+ + |+++++++....+.. ...+..+.+..+++++
T Consensus 15 ~~~IgvIG-lG~MG~~lA~~La~~G~-----~V~v--~--~r~~~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~ 78 (480)
T 2zyd_A 15 KQQIGVVG-MAVMGRNLALNIESRGY-----TVSI--F--NRSREKTEEVIAENP------GKKLVPYYTVKEFVESLET 78 (480)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHTTTC-----CEEE--E--CSSHHHHHHHHHHST------TSCEEECSSHHHHHHTBCS
T ss_pred CCeEEEEc-cHHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHhhCC------CCCeEEeCCHHHHHhCCCC
Confidence 35899999 59999999999998875 3654 3 677777664443221 0134455555666666
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhH
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (398)
+|+||++...+ +.++++.+.+.....|+.+||..+|-....
T Consensus 79 aDvVil~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~g~~~~ 119 (480)
T 2zyd_A 79 PRRILLMVKAG---------------AGTDAAIDSLKPYLDKGDIIIDGGNTFFQD 119 (480)
T ss_dssp SCEEEECSCSS---------------SHHHHHHHHHGGGCCTTCEEEECSCCCHHH
T ss_pred CCEEEEECCCH---------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHH
Confidence 99999985321 134444455665545788999999986443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0002 Score=66.75 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+|||+ |.+|..++..|...+.... .+|.+ + |+++++ . .+.+..+..++++++|+
T Consensus 4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~-~~v~~--~--~~~~~~------------~----g~~~~~~~~~~~~~~D~ 61 (262)
T 2rcy_A 4 NIKLGFMGL-GQMGSALAHGIANANIIKK-ENLFY--Y--GPSKKN------------T----TLNYMSSNEELARHCDI 61 (262)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHHTSSCG-GGEEE--E--CSSCCS------------S----SSEECSCHHHHHHHCSE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCCCC-CeEEE--E--eCCccc------------C----ceEEeCCHHHHHhcCCE
Confidence 469999995 9999999999998774210 13544 3 555444 0 12344556678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
||++.. + ..+.++.+.+..+. ++..|+..+|.++.
T Consensus 62 vi~~v~-~---------------~~~~~v~~~l~~~l-~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 62 IVCAVK-P---------------DIAGSVLNNIKPYL-SSKLLISICGGLNI 96 (262)
T ss_dssp EEECSC-T---------------TTHHHHHHHSGGGC-TTCEEEECCSSCCH
T ss_pred EEEEeC-H---------------HHHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 999864 1 12445555666653 78888889998775
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00038 Score=66.90 Aligned_cols=95 Identities=9% Similarity=0.117 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.++||+|||+ |.+|..++..|...+. +|.+ + |+++++++.... . . +.+..+..++++++|
T Consensus 29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~~~----~--g----~~~~~~~~~~~~~~D 88 (316)
T 2uyy_A 29 TDKKIGFLGL-GLMGSGIVSNLLKMGH-----TVTV--W--NRTAEKCDLFIQ----E--G----ARLGRTPAEVVSTCD 88 (316)
T ss_dssp CSSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE--E--CSSGGGGHHHHH----T--T----CEECSCHHHHHHHCS
T ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHHH----c--C----CEEcCCHHHHHhcCC
Confidence 3579999995 9999999999988764 3544 3 666666553321 1 1 224455667889999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHH---HhcCCCeEEEEECCC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN---AVASRNVKVIVVGNP 224 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~---~~a~p~a~vIvvtNP 224 (398)
+||++...+ ..++++...+. +...++..||..+|-
T Consensus 89 vVi~av~~~---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~ 126 (316)
T 2uyy_A 89 ITFACVSDP---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTV 126 (316)
T ss_dssp EEEECCSSH---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred EEEEeCCCH---------------HHHHHHHcCchhHhhcCCCCCEEEECCCC
Confidence 999985421 22333333321 222467777777774
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00032 Score=68.42 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=73.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFE 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~ 171 (398)
.+.++|.|+||+|++|++++..|+.. |.. .|.+ .+++++++.....++.+....+ ..+++-.....++++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~----~V~~----~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 90 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAK----KIIV----YSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE 90 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCS----EEEE----EESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCC----EEEE----EECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh
Confidence 34579999999999999999999987 631 2433 3566666655544443211000 001100011235678
Q ss_pred CCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+.|+||.+++....+. .+..+.+..|+.-...+.+.+.+. . -..+|.+|
T Consensus 91 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~-v~~~V~~S 141 (344)
T 2gn4_A 91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-A-ISQVIALS 141 (344)
T ss_dssp TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-T-CSEEEEEC
T ss_pred cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-C-CCEEEEec
Confidence 9999999988653221 123467788888888898888875 3 34566665
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00031 Score=69.59 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=62.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+++||+||| .|.+|..++..|+..|. +|.+ + |+++++++... +.. +....+..+.++++
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~-----~V~v--~--dr~~~~~~~l~----~~g------~~~~~s~~e~~~~a 79 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGH-----ECVV--Y--DLNVNAVQALE----REG------IAGARSIEEFCAKL 79 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHH----TTT------CBCCSSHHHHHHHS
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHH----HCC------CEEeCCHHHHHhcC
Confidence 3457999999 59999999999999874 3543 3 67766655332 211 22344566777788
Q ss_pred ---cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 174 ---EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 174 ---DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|+||++...+ .+.++.+.+.....++.+||..+|-.
T Consensus 80 ~~~DvVi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 80 VKPRVVWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp CSSCEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred CCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 9999975321 23344455555545788888887653
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00052 Score=66.07 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.++||+||| .|.+|..++..|+..|. +|.+ + |+++++++..... . .....+..+++++||
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~-----~V~~--~--dr~~~~~~~~~~~----g------~~~~~~~~e~~~~aD 67 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGK-----RVAI--W--NRSPGKAAALVAA----G------AHLCESVKAALSASP 67 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHH----T------CEECSSHHHHHHHSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHC----C------CeecCCHHHHHhcCC
Confidence 357999999 59999999999998875 3544 3 6777766543321 1 234456778889999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||++..
T Consensus 68 vVi~~vp 74 (306)
T 3l6d_A 68 ATIFVLL 74 (306)
T ss_dssp EEEECCS
T ss_pred EEEEEeC
Confidence 9999853
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00066 Score=64.76 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=61.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhc-----C-cCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-c----ceE
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAG-----E-VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-L----REV 160 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~-----~-~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~----~~v 160 (398)
|...+|||+|||+ |.+|..++..|... | . +|.+ + |+ .++++....+..-..... . .++
T Consensus 4 m~~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~-----~V~~--~--~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~ 72 (317)
T 2qyt_A 4 MNQQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL-----EVSW--I--AR-GAHLEAIRAAGGLRVVTPSRDFLARPT 72 (317)
T ss_dssp ---CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE-----EEEE--E--CC-HHHHHHHHHHTSEEEECSSCEEEECCS
T ss_pred CCCCCCEEEEECc-CHHHHHHHHHHHhCccccCCCC-----CEEE--E--Ec-HHHHHHHHhcCCeEEEeCCCCeEEecc
Confidence 3344579999995 99999999999887 5 3 3554 3 55 444443322100000000 0 012
Q ss_pred EEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 161 ~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
..+ ++.++++++|+||++...+. +.++.+.+..+..++..||.++|-.+.
T Consensus 73 ~~~-~~~~~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 73 CVT-DNPAEVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp EEE-SCHHHHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred eEe-cCccccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 222 34567889999999864321 234445555543467788888888654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00029 Score=59.91 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+|||+ |.+|..++..|...+. .+.+ .|++.++++..+.++. ..+....+..+.++++|+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-----~v~v----~~r~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-----KVTV----AGRNIDHVRAFAEKYE-------YEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-----EEEE----EESCHHHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EcCCHHHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence 569999995 9999999988876553 2433 3777787776665543 123334456778899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
||.+.+.+. +-.+. ... .+++.++.+++|.++
T Consensus 84 vi~at~~~~-~~~~~------------------~~l-~~g~~vid~~~p~~~ 115 (144)
T 3oj0_A 84 IITATSSKT-PIVEE------------------RSL-MPGKLFIDLGNPPNI 115 (144)
T ss_dssp EEECSCCSS-CSBCG------------------GGC-CTTCEEEECCSSCSB
T ss_pred EEEeCCCCC-cEeeH------------------HHc-CCCCEEEEccCCccC
Confidence 999866442 11110 112 468999999999764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=61.19 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc----c
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----a 169 (398)
++++|.|+||+|.||.+++..|+. .|. .|.+ .+++.+.++....++.+.. ....-+..-..+.+ .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~ 72 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVL----TARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRAL 72 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEE----EESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-----eEEE----EeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHH
Confidence 456899999999999999999998 774 2443 3566667766666665432 11000111011222 2
Q ss_pred c-------CCCcEEEEeCCCCCCCCC------chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 F-------EDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 l-------~dADiViitag~~rk~g~------~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+ ...|+||.++|....... +-...+..|..-...+.+.+.+...+.+.||+++--
T Consensus 73 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~ 140 (276)
T 1wma_A 73 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 140 (276)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred HHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence 2 278999999886532211 112346777777777777776653235678888754
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00098 Score=62.95 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||.|+||+|+||++++..|+..|. +|.. | .++.+. .++.....+.+++.++|.|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-----~V~~-l---~R~~~~----------------~~~~~~~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-----EVTL-V---SRKPGP----------------GRITWDELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE-E---ESSCCT----------------TEEEHHHHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE-E---ECCCCc----------------CeeecchhhHhhccCCCEE
Confidence 7899999999999999999999875 3432 1 333211 0111111245678899999
Q ss_pred EEeCCCCC-----CCC-CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE
Q 015897 177 LLIGAKPR-----GPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (398)
Q Consensus 177 iitag~~r-----k~g-~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (398)
|..++.+- ... ....++...|..-.+.+.+.+.+...+..++|..
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~ 106 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV 106 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 99876431 111 1234567778888888888777752233334433
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00032 Score=63.28 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~eal~dADi 175 (398)
|||.|+||+|++|++++..|+..|. .|.+ ++++.+.++.. .... ....++.- .....++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~~----~~~~-~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-----QIYA----GARKVEQVPQY----NNVK-AVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-----EEEE----EESSGGGSCCC----TTEE-EEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCccchhhc----CCce-EEEecccCCHHHHHHHHcCCCE
Confidence 4899999999999999999998874 2433 25554432211 0000 00001000 0112466889999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||.++|.... +.+..|..-...+.+.+.+. .-..+|.+|-
T Consensus 67 vi~~ag~~~~------~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS 106 (219)
T 3dqp_A 67 IINVSGSGGK------SLLKVDLYGAVKLMQAAEKA--EVKRFILLST 106 (219)
T ss_dssp EEECCCCTTS------SCCCCCCHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEECCcCCCC------CcEeEeHHHHHHHHHHHHHh--CCCEEEEECc
Confidence 9999886531 13344555566677777764 2346666664
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.005 Score=59.16 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~d 172 (398)
+++||.|+||+|++|++++..|+..|. .|.. + +++..... ..+.+.. . ...+.+. .-...++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~---~~~~~~~-~-~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH-----EVTV--V--DNFFTGRK---RNVEHWI-G-HENFELINHDVVEPLYIE 91 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCG---GGTGGGT-T-CTTEEEEECCTTSCCCCC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC-----EEEE--E--eCCCccch---hhhhhhc-c-CCceEEEeCccCChhhcC
Confidence 467999999999999999999998764 2432 2 33211110 0111111 0 0122221 112346789
Q ss_pred CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 173 ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+|+||.+++..... ..+..+.+..|+.-...+.+.+.+. + ..+|.+|
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~S 140 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-G--ARLLLAS 140 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEC
Confidence 99999998754211 1233456778888888888888875 3 3666665
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=70.76 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=65.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC------
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------ 165 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~------ 165 (398)
..+.++|.|+||+|++|++++..|+..|. .|.+ + +++.........++ ..+.+ ..|
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~l--------~~v~~~~~Dl~d~~~ 79 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQGH-----EILV--I--DNFATGKREVLPPV--------AGLSVIEGSVTDAGL 79 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGTC-----EEEE--E--ECCSSSCGGGSCSC--------TTEEEEECCTTCHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--ECCCccchhhhhcc--------CCceEEEeeCCCHHH
Confidence 33457999999999999999999998773 2433 2 34322111000011 11111 111
Q ss_pred cccccC--CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 PYELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ~~eal~--dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..++++ ++|+||.+++.......+..+ +..|+.-...+.+.+.+. + -+.+|++|
T Consensus 80 ~~~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~-~-~~~iV~~S 135 (330)
T 2pzm_A 80 LERAFDSFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKA-G-VKRLLNFQ 135 (330)
T ss_dssp HHHHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHH-T-CSEEEEEE
T ss_pred HHHHHhhcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 124566 899999998865322222333 778888888888888875 3 34666665
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0019 Score=66.25 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC---CC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (398)
|||+||| +|.+|..++..|+..|. +|.+ + |++.++++....+.... +....+..+.+..+.++ ++
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G~-----~V~v--~--dr~~~~~~~l~~~~g~~--~~~~~i~~~~~~~e~v~~l~~a 69 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAV--F--NRTYSKSEEFMKANASA--PFAGNLKAFETMEAFAASLKKP 69 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHHTTTS--TTGGGEEECSCHHHHHHHBCSS
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHhcCCC--CCCCCeEEECCHHHHHhcccCC
Confidence 5899999 59999999999998875 3554 3 67777776554332100 11123445555555554 59
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
|+||++...+ +.++++.+.+.....++.+||..+|-...
T Consensus 70 DvVilaVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~~ 108 (478)
T 1pgj_A 70 RKALILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHFK 108 (478)
T ss_dssp CEEEECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCHH
T ss_pred CEEEEecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCChH
Confidence 9999985321 12334445555544578888888887643
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=61.87 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-----Ee--cCcc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPY 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~ 167 (398)
+++||.|+||+|+||++++..|+..|. .|.. + .++.+.... ..++.+.. ....++. ++ ....
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~ 72 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY-----TVRA--T--VRDPTNVKK-VKHLLDLP-KAETHLTLWKADLADEGSFD 72 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCTTCHHH-HHHHHTST-THHHHEEEEECCTTSTTTTH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEE--E--ECCcchhHH-HHHHHhcc-cCCCeEEEEEcCCCCHHHHH
Confidence 356899999999999999999998874 2432 1 233332211 11111100 0000111 11 1124
Q ss_pred cccCCCcEEEEeCCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~-r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-..+|++|-
T Consensus 73 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~riV~~SS 128 (337)
T 2c29_D 73 EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAA-KTVRRLVFTSS 128 (337)
T ss_dssp HHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHH-SCCCEEEEECC
T ss_pred HHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEeee
Confidence 6788999999988753211122 2346788988888888888775 32356666664
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0033 Score=57.86 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY---- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~---- 167 (398)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... . ++. +..| +.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 74 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-----AVVV----ADINAEAAEAVAKQIVADG-G---TAISVAVDVSDPESAK 74 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---EEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHH
Confidence 456899999999999999999999875 2443 3678788877777765432 1 111 1111 11
Q ss_pred -------cccCCCcEEEEeCCCCC----CC--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 -------ELFEDAEWALLIGAKPR----GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 -------eal~dADiViitag~~r----k~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|++|..+|... .+ ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--.
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~ 150 (253)
T 3qiv_A 75 AMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR--GGGAIVNQSSTA 150 (253)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCcc
Confidence 12237899999988631 11 1122 2345556543 66677777764 578888888654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00043 Score=65.55 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+|+||+||| +|.+|..++..|...+. +|. ++ | +.++++.... .. +....+..++++++|
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~--~~--~-~~~~~~~~~~----~g------~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH-----QLH--VT--T-IGPVADELLS----LG------AVNVETARQVTEFAD 60 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC-----EEE--EC--C-SSCCCHHHHT----TT------CBCCSSHHHHHHTCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-----EEE--EE--c-CHHHHHHHHH----cC------CcccCCHHHHHhcCC
Confidence 357999999 59999999999988764 354 34 5 5555443221 11 123345567789999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||++..
T Consensus 61 ~vi~~vp 67 (295)
T 1yb4_A 61 IIFIMVP 67 (295)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999853
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00031 Score=65.74 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|++|.|+||+|+||++++..|+..|. .|.+ . ++++.+.. .........++.-.....+.+++.|+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-----~V~~--~--~r~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~~~D~ 67 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-----ILRL--A--DLSPLDPA------GPNEECVQCDLADANAVNAMVAGCDG 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-----EEEE--E--ESSCCCCC------CTTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----EEEE--E--ecCCcccc------CCCCEEEEcCCCCHHHHHHHHcCCCE
Confidence 46899999999999999999998764 2433 2 44433221 00000000011000112356778999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.++|... ...-.+.+..|+.-...+.+.+.+. ..+.||++|
T Consensus 68 vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iv~~S 110 (267)
T 3rft_A 68 IVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAH--GQPRIVFAS 110 (267)
T ss_dssp EEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEc
Confidence 999998742 1233456788988888888888875 345666665
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0014 Score=63.10 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=68.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH-HhhhcCCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D-L~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|||+|||| |.+|..++..|. .+. .|.+ ++++.++++....+ +.-.. +............++..++|+
T Consensus 3 mkI~IiGa-Ga~G~~~a~~L~-~g~-----~V~~----~~r~~~~~~~l~~~G~~~~~-~~~~~~~~~~~~~~~~~~~D~ 70 (307)
T 3ego_A 3 LKIGIIGG-GSVGLLCAYYLS-LYH-----DVTV----VTRRQEQAAAIQSEGIRLYK-GGEEFRADCSADTSINSDFDL 70 (307)
T ss_dssp CEEEEECC-SHHHHHHHHHHH-TTS-----EEEE----ECSCHHHHHHHHHHCEEEEE-TTEEEEECCEEESSCCSCCSE
T ss_pred CEEEEECC-CHHHHHHHHHHh-cCC-----ceEE----EECCHHHHHHHHhCCceEec-CCCeecccccccccccCCCCE
Confidence 69999995 999999999998 653 3654 35666555433321 00000 000001111112356789999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEecCc
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~gt~ 249 (398)
||++... .-+.++.+.++.+ .++. ||.+.|-++..- .+.+. +|. +++++.+.
T Consensus 71 vilavK~----------------~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e-~l~~~---~~~~~vl~g~~~ 123 (307)
T 3ego_A 71 LVVTVKQ----------------HQLQSVFSSLERI-GKTN-ILFLQNGMGHIH-DLKDW---HVGHSIYVGIVE 123 (307)
T ss_dssp EEECCCG----------------GGHHHHHHHTTSS-CCCE-EEECCSSSHHHH-HHHTC---CCSCEEEEEEEC
T ss_pred EEEEeCH----------------HHHHHHHHHhhcC-CCCe-EEEecCCccHHH-HHHHh---CCCCcEEEEEEe
Confidence 9998532 1234455666655 4677 899999987542 33333 343 66665544
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0014 Score=62.76 Aligned_cols=113 Identities=10% Similarity=0.081 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEE-EecC--c----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVK-IGIN--P----Y 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~-i~~~--~----~ 167 (398)
|+||.|+||+|++|++++..|+..|. .|.+ + +++. ........++.+. + ++. +..| + .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~l~~~--~---~~~~~~~Dl~d~~~~~ 66 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI-----DLIV--F--DNLSRKGATDNLHWLSSL--G---NFEFVHGDIRNKNDVT 66 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCCSTTHHHHHHHHHTT--C---CCEEEECCTTCHHHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC-----EEEE--E--eCCCccCchhhhhhhccC--C---ceEEEEcCCCCHHHHH
Confidence 56899999999999999999998764 2433 2 3321 1112122333321 1 111 1111 1 2
Q ss_pred cccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+++++ .|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ...+.+|.+|-
T Consensus 67 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS 125 (347)
T 1orr_A 67 RLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSST 125 (347)
T ss_dssp HHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEE
T ss_pred HHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecc
Confidence 45566 99999998854210 0123456788988889999988886 44556776663
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00062 Score=64.65 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||.|+||+|+||++++..|+..|. .+.+ . .++....+. +.........++.- ....++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~v~~--~--~~~~~~~~~----~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNE-----IVVI--D--NLSSGNEEF----VNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSC-----EEEE--C--CCSSCCGGG----SCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----EEEE--E--cCCCCChhh----cCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 56899999999999999999998772 2333 1 222221110 00000000011111 223566789999
Q ss_pred EEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||.+++.+.. ...+..+.+..|+.-...+.+.+.+. + ...+|++|-
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~-~~~iv~~SS 114 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-G-VSRIVFTST 114 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCeEEEeCc
Confidence 9999886522 22345567888999999999988875 3 346666664
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00013 Score=71.14 Aligned_cols=108 Identities=9% Similarity=0.063 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC-------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------- 165 (398)
.|+||.|+||+|++|++++..|+.. +. .|.. ++++.+.+. ++... + .+.+. .|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~----~~r~~~~~~----~~~~~--~---~v~~~~~Dl~~d~~~ 84 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDW-----EVFG----MDMQTDRLG----DLVKH--E---RMHFFEGDITINKEW 84 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSC-----EEEE----EESCCTTTG----GGGGS--T---TEEEEECCTTTCHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-----EEEE----EeCChhhhh----hhccC--C---CeEEEeCccCCCHHH
Confidence 3679999999999999999999987 53 2432 245443322 11110 0 11111 11
Q ss_pred cccccCCCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..++++++|+||.+++...... .+..+.+..|+.-...+.+.+.+. + ..+|.+|-
T Consensus 85 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~--~~~v~~SS 141 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 141 (372)
T ss_dssp HHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T--CEEEEECC
T ss_pred HHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEeCc
Confidence 1246678999999987643111 133456677887778888888885 3 56777764
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0005 Score=61.32 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||.|+||+|++|++++..|+..+.+. .|.+ .+++.+. +..... ....++.-.....+++ +|+
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~---~V~~----~~r~~~~------~~~~~~-~~~~D~~~~~~~~~~~--~d~ 68 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLA---KVIA----PARKALA------EHPRLD-NPVGPLAELLPQLDGS--IDT 68 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC---EEEC----CBSSCCC------CCTTEE-CCBSCHHHHGGGCCSC--CSE
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCC---eEEE----EeCCCcc------cCCCce-EEeccccCHHHHHHhh--hcE
Confidence 4689999999999999999999987522 1332 3444332 000000 0000110000112223 899
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
||.++|.......+..++...|......+.+.+.+. . -..+|.+|-
T Consensus 69 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~Ss 114 (215)
T 2a35_A 69 AFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-G-ARHYLVVSA 114 (215)
T ss_dssp EEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-T-CCEEEEECC
T ss_pred EEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-C-CCEEEEECC
Confidence 999988643222345566778888888888888875 2 345666664
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0019 Score=62.42 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=67.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH---HhhhcCCCc--ceEEEecCcccccC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDSLFPLL--REVKIGINPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D---L~d~~~~~~--~~v~i~~~~~eal~ 171 (398)
+||+|||+ |.+|..++..|...|. +|.+ + ++++ .+....+ +.....+.. ..+.++++..++.+
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~--~--~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~ 70 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGH-----CVSV--V--SRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET 70 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTC-----EEEE--E--CSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC
Confidence 69999995 9999999999998774 3654 3 4443 2222111 111000100 01233444444445
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCc
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~ 249 (398)
++|+||++.... . +.++.+.+..+..++..||.+.|-.+..- .+.+..+. .+++++.+.
T Consensus 71 ~~DlVilavK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~-~l~~~~~~--~~vl~g~~~ 129 (320)
T 3i83_A 71 KPDCTLLCIKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEP-EVAAAFPD--NEVISGLAF 129 (320)
T ss_dssp CCSEEEECCCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSH-HHHHHSTT--SCEEEEEEE
T ss_pred CCCEEEEecCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHH-HHHHHCCC--CcEEEEEEE
Confidence 999999985322 1 11233444544457889999999876543 34444432 256654433
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.004 Score=57.04 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY---- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~---- 167 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++. +..| +.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 76 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLG-G---QAFACRCDITSEQELS 76 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHHhC-C---ceEEEEcCCCCHHHHH
Confidence 346899999999999999999998874 2443 3677777766666665322 1 111 1111 22
Q ss_pred ccc-------CCCcEEEEeCCCCCC-C-CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ELF-------EDAEWALLIGAKPRG-P-GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 eal-------~dADiViitag~~rk-~-g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+ .+.|+||.++|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 77 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 147 (255)
T 1fmc_A 77 ALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITSM 147 (255)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 222 389999999886432 1 1222 2345555544 44444444553 45778887743
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0018 Score=66.64 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc---C
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---E 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal---~ 171 (398)
.++||+||| .|.+|..++..|+..|. +|.+ + |++.++++..... .. ....+....+..+.+ +
T Consensus 3 ~~~kIgiIG-lG~MG~~lA~~L~~~G~-----~V~v--~--dr~~~~~~~l~~~---g~--~g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 3 AQADIALIG-LAVMGQNLILNMNDHGF-----VVCA--F--NRTVSKVDDFLAN---EA--KGTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CCBSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHHHHT---TT--TTSSCEECSSHHHHHHTBC
T ss_pred CCCEEEEEC-hhHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHhc---cc--CCCceeccCCHHHHHhhcc
Confidence 467999999 59999999999999885 3554 3 6777776644322 01 111233334444444 3
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
++|+||++...+ +.++++.+.+.....++.+||..+|-.
T Consensus 68 ~aDvVil~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 68 KPRRIILLVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SSCEEEECSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCEEEEecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 699999975321 234445556655546788888888764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0021 Score=61.86 Aligned_cols=117 Identities=14% Similarity=0.044 Sum_probs=67.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH-HhhhcCCCc----ceEEEecCcccccC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLL----REVKIGINPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D-L~d~~~~~~----~~v~i~~~~~eal~ 171 (398)
+||+|||| |.+|..++..|...|. +|.+ + ++++ .+....+ +. ...... ..+.++ ++.+++.
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~--~--~r~~--~~~i~~~g~~-~~~~~g~~~~~~~~~~-~~~~~~~ 68 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGE-----DVHF--L--LRRD--YEAIAGNGLK-VFSINGDFTLPHVKGY-RAPEEIG 68 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSC-----CEEE--E--CSTT--HHHHHHTCEE-EEETTCCEEESCCCEE-SCHHHHC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--EcCc--HHHHHhCCCE-EEcCCCeEEEeeceee-cCHHHcC
Confidence 68999995 9999999999998874 3665 3 4543 2222111 00 000000 012233 3456688
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEe
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA 246 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~ 246 (398)
++|+||++... .-+.++.+.+..+..++..||.+.|-.+.... +.+..+. .+++++
T Consensus 69 ~~D~vilavk~----------------~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~-l~~~~~~--~~v~~~ 124 (312)
T 3hn2_A 69 PMDLVLVGLKT----------------FANSRYEELIRPLVEEGTQILTLQNGLGNEEA-LATLFGA--ERIIGG 124 (312)
T ss_dssp CCSEEEECCCG----------------GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHH-HHHHTCG--GGEEEE
T ss_pred CCCEEEEecCC----------------CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHH-HHHHCCC--CcEEEE
Confidence 99999998532 12234455566555688999999999876543 3344432 255554
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00059 Score=64.13 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------ 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------ 168 (398)
++++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .-+..-..+.+
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~~~~~~~~~~ 70 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-----TVIG----TARRTEALDDLVAAYPDRA----EAISLDVTDGERIDVVA 70 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHCTTTE----EEEECCTTCHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhccCCc----eEEEeeCCCHHHHHHHH
Confidence 456899999999999999999999874 2443 3666666664444332111 00111011222
Q ss_pred -----ccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -----LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -----al~dADiViitag~~r-k~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|+||..+|... .+ ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~~sS~ 139 (281)
T 3m1a_A 71 ADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER--GSGSVVNISSF 139 (281)
T ss_dssp HHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEcCc
Confidence 2237899999988642 11 1222 2345566554 67777777764 46777777753
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0015 Score=60.75 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------e 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .|++.+.++..+.++......+..+++-..+.. +
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGA-----TVAI----ADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999875 2443 367777777666665321100000110000011 2
Q ss_pred ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+.|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. .+++.||+++--
T Consensus 79 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 143 (259)
T 4e6p_A 79 HAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQ-GRGGKIINMASQ 143 (259)
T ss_dssp HSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEECCh
Confidence 23389999999886532 2 1121 233455543 455566666664 447888888754
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0025 Score=61.89 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh--cCcCCCCCceEEEecccccchhhHHHH---HHHHhhhcCCCcceEE-EecC--c
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA--GEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVK-IGIN--P 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~--~~~~~~~~~i~L~L~d~D~~~~~l~g~---a~DL~d~~~~~~~~v~-i~~~--~ 166 (398)
+++||.|+||+|+||++++..|+. .|. .|.+ + +++....... ...+.+........+. +..| +
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 79 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-----KVVV--L--DKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN 79 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-----EEEE--E--ECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-----eEEE--E--ECCCccccccccchhhhhhhhhccccCceEEECCCCC
Confidence 467999999999999999999998 554 2433 2 3332210000 0000000000000111 1111 1
Q ss_pred ----ccc-cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 ----YEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ----~ea-l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.++ ..++|+||.+++.......+..+.+..|+.-...+.+.+.+. + +.+|++|-
T Consensus 80 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~--~~~V~~SS 138 (362)
T 3sxp_A 80 PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK-K--AKVIYASS 138 (362)
T ss_dssp HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEEEE
T ss_pred HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEeCc
Confidence 123 679999999998543333455677888999999999998875 2 33565553
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=62.36 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.|+||++|| .|.+|..++..|+..|. ++.. + |++.++++..+. .. .+...+..++.+++|
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~-----~v~v--~--dr~~~~~~~l~~----~G------a~~a~s~~e~~~~~d 61 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGY-----LLNV--F--DLVQSAVDGLVA----AG------ASAARSARDAVQGAD 61 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHHH----TT------CEECSSHHHHHTTCS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCC-----eEEE--E--cCCHHHHHHHHH----cC------CEEcCCHHHHHhcCC
Confidence 367999999 79999999999999875 3443 3 677776654432 11 234456788899999
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+||++-
T Consensus 62 vv~~~l 67 (300)
T 3obb_A 62 VVISML 67 (300)
T ss_dssp EEEECC
T ss_pred ceeecC
Confidence 999863
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00052 Score=68.37 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccc---cchhhHHHHHHHHh---hhcCCCc------ceEE-
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSE---RSLQALEGVAMELE---DSLFPLL------REVK- 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D---~~~~~l~g~a~DL~---d~~~~~~------~~v~- 161 (398)
+|||+|||| |.+|..++..|+.. |. .|.+ + | ++++.++....+-. .....-. ..+.
T Consensus 2 ~mkI~ViGa-G~~G~~~a~~La~~~G~-----~V~~--~--~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 71 (404)
T 3c7a_A 2 TVKVCVCGG-GNGAHTLSGLAASRDGV-----EVRV--L--TLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKV 71 (404)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSTTE-----EEEE--E--CCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSE
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCC-----EEEE--E--eCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceE
Confidence 469999995 99999999999773 53 3544 3 5 55555543221100 0000000 0121
Q ss_pred EecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE
Q 015897 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (398)
Q Consensus 162 i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (398)
++++..+++++||+||++...+ ...++.+.+..+..++.+|+..
T Consensus 72 ~~~~~~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 72 ITKDPEIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp EESCHHHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEET
T ss_pred EeCCHHHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEEc
Confidence 4455567799999999986421 1345566666654567766553
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00095 Score=60.71 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~d 172 (398)
++++|.|+||+|++|++++..|+..+. + ..|.+ .+++.++++ ++.... .. ....++ ....+.+++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~-g--~~V~~----~~r~~~~~~----~~~~~~-~~-~~~D~~d~~~~~~~~~~ 69 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSD-K--FVAKG----LVRSAQGKE----KIGGEA-DV-FIGDITDADSINPAFQG 69 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTT-T--CEEEE----EESCHHHHH----HTTCCT-TE-EECCTTSHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCC-C--cEEEE----EEcCCCchh----hcCCCe-eE-EEecCCCHHHHHHHHcC
Confidence 357999999999999999999998731 0 02433 356554443 221110 00 001111 112356789
Q ss_pred CcEEEEeCCCCCC------------CCCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 173 AEWALLIGAKPRG------------PGME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 173 ADiViitag~~rk------------~g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+|+||.+++.... +... -.+....|..-...+.+.+.+. . -..+|++|
T Consensus 70 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 132 (253)
T 1xq6_A 70 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-G-VKHIVVVG 132 (253)
T ss_dssp CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-T-CSEEEEEE
T ss_pred CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-C-CCEEEEEc
Confidence 9999998875321 1110 0134677888888888888875 3 34555555
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.003 Score=60.47 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH--HHHHHHhhhcCCCcceE--EEe--cCcccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE--GVAMELEDSLFPLLREV--KIG--INPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~--g~a~DL~d~~~~~~~~v--~i~--~~~~ea 169 (398)
++||.|+||+|+||++++..|+..|. .|.. + .++.+.+. ....++... ....-+ .+. ....++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~ 77 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY-----AVNT--T--VRDPDNQKKVSHLLELQEL--GDLKIFRADLTDELSFEAP 77 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCTTCTTTTHHHHHHGGG--SCEEEEECCTTTSSSSHHH
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEE--E--EcCcchhhhHHHHHhcCCC--CcEEEEecCCCChHHHHHH
Confidence 36899999999999999999998874 2432 1 22222111 011122211 100001 111 112357
Q ss_pred cCCCcEEEEeCCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 FEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~-r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-..+|++|-
T Consensus 78 ~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~v~r~V~~SS 131 (338)
T 2rh8_A 78 IAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRA-KSVKRVILTSS 131 (338)
T ss_dssp HTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHC-TTCCEEEEECC
T ss_pred HcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHc-CCcCEEEEEec
Confidence 78999999988743211111 1236778888888888888774 22356777664
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0042 Score=63.72 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc---CCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---EDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal---~dA 173 (398)
+||+||| +|.+|..++..|+..|. +|.+ + |++.++++..... .. + ...+..+.+..+.+ +++
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G~-----~V~v--~--dr~~~~~~~l~~~---~~-~-g~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCA--F--NRTVSKVDDFLAN---EA-K-GTKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHHHHT---TT-T-TSSCEECSSHHHHHHHBCSS
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHhc---cc-c-CCCeEEeCCHHHHHhhccCC
Confidence 5899999 59999999999998875 3554 3 6776766644331 00 0 01234444444544 599
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
|+||++...+ +.++++.+.+.....++.+||..+|-...
T Consensus 68 DvVilaVp~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~ 106 (482)
T 2pgd_A 68 RRIILLVKAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYR 106 (482)
T ss_dssp CEEEECSCTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred CEEEEeCCCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence 9999985321 12334444555544577888888877543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0052 Score=55.88 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC--ccc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYE----- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~e----- 168 (398)
+++|.|+||+|.+|.+++..|+..|. .+.+ . .+++.+.++....++.... ... ...+..| +.+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-----~v~~--~-~~r~~~~~~~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~ 70 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-----ALAI--H-YGQNREKAEEVAEEARRRG-SPL-VAVLGANLLEAEAATAL 70 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE--E-ESSCHHHHHHHHHHHHHTT-CSC-EEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHHhcC-Cce-EEEEeccCCCHHHHHHH
Confidence 35899999999999999999999874 2433 1 1566666665555554321 110 1101111 222
Q ss_pred ------ccCCCcEEEEeCCCCCCC---CCc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 ------LFEDAEWALLIGAKPRGP---GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 ------al~dADiViitag~~rk~---g~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+.|+||..+|..... ..+ -...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 71 ~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~~sS~ 140 (245)
T 2ph3_A 71 VHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA--RFGRIVNITSV 140 (245)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc--CCCEEEEEeCh
Confidence 134789999998865321 111 12345555444 66666666664 45788888754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0074 Score=55.47 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++.+ ..| +.+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~D~~~~~~~~ 78 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-----RVII----ADLDEAMATKAVEDLRMEG-H---DVSSVVMDVTNTESVQ 78 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEEecCCCHHHHH
Confidence 346899999999999999999999874 2443 3667676666666665322 1 1211 111 222
Q ss_pred -cc-------CCCcEEEEeCCCCC--CC--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -LF-------EDAEWALLIGAKPR--GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -al-------~dADiViitag~~r--k~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+ ...|+||..+|... .+ ..+. .+.+..|..- .+.+.+.+.+. ..+.+++++-.
T Consensus 79 ~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~sS~ 151 (260)
T 3awd_A 79 NAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ--KQGVIVAIGSM 151 (260)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEecc
Confidence 22 37899999988643 11 1122 2345555443 34444445443 46777777654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=55.23 Aligned_cols=115 Identities=12% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++.+ ..| +.+
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dl~~~~~v~~ 97 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKS-----KLVL----WDINKHGLEETAAKCKGLG-A---KVHTFVVDCSNREDIYS 97 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EEcCHHHHHHHHHHHHhcC-C---eEEEEEeeCCCHHHHHH
Confidence 46899999999999999999999874 2443 3667677766666665422 1 1111 111 221
Q ss_pred -------ccCCCcEEEEeCCCCCCCCC---c---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 -------LFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g~---~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+.+.|+||.++|....... + -...+..|..- .+.+.+.+.+. ..+.||+++-..
T Consensus 98 ~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~~ 169 (272)
T 1yb1_A 98 SAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAA 169 (272)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred HHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEechh
Confidence 23478999999986532111 1 12345555443 55555555553 467888877543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0097 Score=55.66 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.....+ ..+.. ..| +.+.
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~ 100 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILS 100 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECChHHHHHHHHHHHhcCCC--ceEEEEEecCCCHHHHHH
Confidence 35899999999999999999999874 2443 367777776666666542211 12221 111 2222
Q ss_pred --------cCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHH----HHHHHHHHHHhcCC-CeEEEEECCC
Q 015897 170 --------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASR-NVKVIVVGNP 224 (398)
Q Consensus 170 --------l~dADiViitag~~rk~g---~~r---~dll~~N~~i----~~~i~~~i~~~a~p-~a~vIvvtNP 224 (398)
+.+.|+||.++|...... .+. ...+..|+.- .+.+.+.+.+. .. ++.||+++--
T Consensus 101 ~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~ 173 (279)
T 1xg5_A 101 MFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSM 173 (279)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCG
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcCh
Confidence 237999999988653211 122 2345566554 66777777764 32 4778777743
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00051 Score=62.69 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+||| +|.+|..++..|...+. .+.+ .|++.++++. +.+. .+... +..++++++|+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~-----~V~~----~~r~~~~~~~----~~~~------g~~~~-~~~~~~~~~Dv 86 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGF-----KVVV----GSRNPKRTAR----LFPS------AAQVT-FQEEAVSSPEV 86 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----EESSHHHHHH----HSBT------TSEEE-EHHHHTTSCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH----HHHc------CCcee-cHHHHHhCCCE
Confidence 56899999 59999999999998764 2544 3676665442 2221 12222 45678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
||++.... . ..++ + + +.... ++.+|+.++|+...
T Consensus 87 Vi~av~~~----~-~~~v-------~----~-l~~~~-~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 87 IFVAVFRE----H-YSSL-------C----S-LSDQL-AGKILVDVSNPTEQ 120 (215)
T ss_dssp EEECSCGG----G-SGGG-------G----G-GHHHH-TTCEEEECCCCCHH
T ss_pred EEECCChH----H-HHHH-------H----H-HHHhc-CCCEEEEeCCCccc
Confidence 99985421 1 1111 1 1 22332 68899999999764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00049 Score=62.77 Aligned_cols=116 Identities=11% Similarity=0.142 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+.++|.|+||+|.+|.+++..|+..|.+. .|.+ + +++.+.++... ..... ....++.-..+..+++++.|
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~---~V~~--~--~r~~~~~~~~~--~~~~~-~~~~D~~d~~~~~~~~~~~d 86 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFS---KVTL--I--GRRKLTFDEEA--YKNVN-QEVVDFEKLDDYASAFQGHD 86 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCS---EEEE--E--ESSCCCCCSGG--GGGCE-EEECCGGGGGGGGGGGSSCS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCC---EEEE--E--EcCCCCccccc--cCCce-EEecCcCCHHHHHHHhcCCC
Confidence 34689999999999999999999887532 1433 2 44433321100 00000 00001110112345678899
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||.++|.... +.+..+++..|..-...+.+.+.+. ..+.+|++|-
T Consensus 87 ~vi~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~iv~~SS 132 (242)
T 2bka_A 87 VGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAG--GCKHFNLLSS 132 (242)
T ss_dssp EEEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEECCCcccc-cCCcccceeeeHHHHHHHHHHHHHC--CCCEEEEEcc
Confidence 99999885421 1123456677877778888888774 3356666664
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0058 Score=55.72 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec--Ccccc--
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL-- 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~ea-- 169 (398)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+ +++.+.++....++.+.. . ++.. .. .+.+.
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~-----~V~~--~~-~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 71 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-----NIVL--NG-SPASTSLDATAEEFKAAG-I---NVVVAKGDVKNPEDVE 71 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--EE-CTTCSHHHHHHHHHHHTT-C---CEEEEESCTTSHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE--Ec-CcCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHH
Confidence 346899999999999999999999874 2443 21 345555555555554321 1 1111 11 12222
Q ss_pred ---------cCCCcEEEEeCCCCCCC------CCchhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 ---------FEDAEWALLIGAKPRGP------GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 ---------l~dADiViitag~~rk~------g~~r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.|+||..+|..... ..+-...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 143 (247)
T 2hq1_A 72 NMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ--KSGKIINITSI 143 (247)
T ss_dssp HHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECC-
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 23789999998864311 11122345555543 45555555553 46788887754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00037 Score=67.13 Aligned_cols=116 Identities=11% Similarity=0.063 Sum_probs=63.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-C------c
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------P 166 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~------~ 166 (398)
.+++||.|+||+|++|++++..|+..|. .+.+.. .|+.... .....+.+.. . ...+.+.. | .
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~~~v~~--~~~~~~~--~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~~ 90 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYE-----TYKIIN--FDALTYS--GNLNNVKSIQ-D-HPNYYFVKGEIQNGELL 90 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCT-----TEEEEE--EECCCTT--CCGGGGTTTT-T-CTTEEEEECCTTCHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCC-----CcEEEE--Eeccccc--cchhhhhhhc-c-CCCeEEEEcCCCCHHHH
Confidence 3568999999999999999999998873 122211 2332100 0011122111 0 01222211 1 2
Q ss_pred ccccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ~eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+++++ +|+||.+++..... ..+..+.+..|+.-...+.+.+.+. +. ..+|.+|
T Consensus 91 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~-~~~v~~S 148 (346)
T 4egb_A 91 EHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PH-IKLVQVS 148 (346)
T ss_dssp HHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TT-SEEEEEE
T ss_pred HHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CC-CEEEEeC
Confidence 244555 99999998864321 1334567888988889999988885 33 4455555
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0012 Score=62.38 Aligned_cols=164 Identities=15% Similarity=0.076 Sum_probs=84.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC-CcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~-~~~~v~i~~~~~eal~dADi 175 (398)
|||.|+||+|++|++++..|+..|. .|.. + +++.+... ++.+.... ...++.-. +..+++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~----~~~~~~~~~~~~Dl~d~-~~~~~~~~-d~ 65 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-----EVVV--V--DNLSSGRR----EFVNPSAELHVRDLKDY-SWGAGIKG-DV 65 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--CCCSSCCG----GGSCTTSEEECCCTTST-TTTTTCCC-SE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----EEEE--E--eCCCCCch----hhcCCCceEEECccccH-HHHhhcCC-CE
Confidence 5899999999999999999998874 2433 2 34322211 00000000 00011000 12345555 99
Q ss_pred EEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH----HHHHHCCCCCCceEEecCc
Q 015897 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAPSIPAKNFHALTR 249 (398)
Q Consensus 176 Viitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~----~~~k~~~~~~~kvig~gt~ 249 (398)
||.+++.+.. ...+....+..|+.-...+.+.+.+. + -..+|.+|-- .+... .+.+..+ .++...-..+-
T Consensus 66 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~iv~~SS~-~vyg~~~~~~~~e~~~-~~p~~~Y~~sK 141 (312)
T 3ko8_A 66 VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-G-VRTVVFASSS-TVYGDADVIPTPEEEP-YKPISVYGAAK 141 (312)
T ss_dssp EEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEEEG-GGGCSCSSSSBCTTSC-CCCCSHHHHHH
T ss_pred EEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEeCcH-HHhCCCCCCCCCCCCC-CCCCChHHHHH
Confidence 9999886432 12234566788988888898888875 3 3355555521 11000 0000000 11111001111
Q ss_pred hhHHHHHHHHHHHcCcCcCceeeEEEEecc
Q 015897 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H 279 (398)
....++-..+++..|+...-++.-.|+|..
T Consensus 142 ~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~ 171 (312)
T 3ko8_A 142 AAGEVMCATYARLFGVRCLAVRYANVVGPR 171 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccccCcC
Confidence 223344445566678777667665778854
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0076 Score=56.09 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~ea--- 169 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... + ..++. +..| +.+.
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~ 81 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGA-----KLSL----VDVSSEGLEASKAAVLETA-P-DAEVLTTVADVSDEAQVEA 81 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHC-T-TCCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-C-CceEEEEEccCCCHHHHHH
Confidence 45899999999999999999999874 2443 3677777776666665431 0 01111 1111 2222
Q ss_pred --------cCCCcEEEEeCCCCCC--C--CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 --------FEDAEWALLIGAKPRG--P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 --------l~dADiViitag~~rk--~--g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+...|++|..+|.... + ..+. ...+..|. .+.+.+.+.+.+. ..+.||+++--
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 153 (267)
T 1iy8_A 82 YVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASV 153 (267)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcch
Confidence 2367999999886532 1 1121 23345554 3455666777664 45777777754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0077 Score=56.51 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. . ++. +..| +.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 70 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA-----KILL----GARRQARIEAIATEIRDAG-G---TALAQVLDVTDRHSVAA 70 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 35799999999999999999999875 2443 3678888887777776432 1 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+.. ..+..|+ .+.+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 141 (264)
T 3tfo_A 71 FAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ--RSGQIINIGSI 141 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEEcCH
Confidence 223478999999887532 2 11221 2345553 3455666666663 56888888754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00077 Score=65.20 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=68.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch----hhHHHHHHHHhhhcCCCcceEEE-ecC---
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL----QALEGVAMELEDSLFPLLREVKI-GIN--- 165 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~----~~l~g~a~DL~d~~~~~~~~v~i-~~~--- 165 (398)
.+++||.|+||+|++|++++..|+..|. .|.. + +++. +.++.....+.... ...+.+ ..|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d 92 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVG--L--DNFATGHQRNLDEVRSLVSEKQ---WSNFKFIQGDIRN 92 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCHHHHHHHHHHSCHHH---HTTEEEEECCTTS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCCccchhhHHHHhhhccccc---CCceEEEECCCCC
Confidence 4568999999999999999999998764 2433 2 3332 23332222221100 011211 111
Q ss_pred ---cccccCCCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ---PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ---~~eal~dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..++++++|+||.+++....+. .+..+.+..|+.-...+.+.+.+. + -..+|.+|
T Consensus 93 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~~v~~S 152 (352)
T 1sb8_A 93 LDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-K-VQSFTYAA 152 (352)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-T-CSEEEEEE
T ss_pred HHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 2356789999999988542110 123456778888888888888874 2 34566555
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0037 Score=59.22 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (398)
++||.|+||+|++|++++..|+..+. .+.+ + +++.+ .|+.+.. ...++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~v~~--~--~r~~~------~D~~d~~-----------~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD-----VELV--L--RTRDE------LNLLDSR-----------AVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-----EEEE--C--CCTTT------CCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----eEEE--E--ecCcc------CCccCHH-----------HHHHHHHhcCC
Confidence 46899999999999999999988764 2332 2 33211 1222111 1223445 89
Q ss_pred cEEEEeCCCCCCC---CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 174 EWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~---g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|+||.+++..... ..+..+.+..|+.-...+.+.+.+. . -..+|.+|-
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~SS 107 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-D-VNKLLFLGS 107 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEECC
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEEEcc
Confidence 9999998754211 1133456778888888898888874 2 346666664
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00075 Score=64.54 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch--hhHHHHHHHHhhhcCCCcceEEE-ecC--c----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKI-GIN--P---- 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~~~~~~~v~i-~~~--~---- 166 (398)
.|||.|+||+|++|++++..|+..+.-. .|.. + +++. ...+. ..++.+ ...+.+ ..| +
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~---~V~~--~--~r~~~~~~~~~-~~~~~~-----~~~~~~~~~Dl~d~~~~ 69 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDW---EVIN--I--DKLGYGSNPAN-LKDLED-----DPRYTFVKGDVADYELV 69 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTC---EEEE--E--ECCCTTCCGGG-GTTTTT-----CTTEEEEECCTTCHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCC---EEEE--E--ecCcccCchhH-Hhhhcc-----CCceEEEEcCCCCHHHH
Confidence 3689999999999999999999875200 2332 2 3321 11110 011111 011221 111 2
Q ss_pred ccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+++.++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ...+.+|.+|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 126 (336)
T 2hun_A 70 KELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVS 126 (336)
T ss_dssp HHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred HHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 24457899999998864210 1123456788998888999888886 3445777666
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0054 Score=63.24 Aligned_cols=101 Identities=8% Similarity=0.101 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC---C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d---A 173 (398)
.||+||| +|.+|..++..|+..|. +|.+ + |++.++++..... .. + ...+..+.+..+.+++ +
T Consensus 11 ~~IgvIG-lG~MG~~lA~~La~~G~-----~V~v--~--dr~~~~~~~l~~~---~~-~-~~gi~~~~s~~e~v~~l~~a 75 (497)
T 2p4q_A 11 ADFGLIG-LAVMGQNLILNAADHGF-----TVCA--Y--NRTQSKVDHFLAN---EA-K-GKSIIGATSIEDFISKLKRP 75 (497)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSSHHHHHHHHT---TT-T-TSSEECCSSHHHHHHTSCSS
T ss_pred CCEEEEe-eHHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHcc---cc-c-CCCeEEeCCHHHHHhcCCCC
Confidence 4899999 59999999999999875 3654 3 6777766544321 10 1 0124444455565555 9
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
|+||++...+ +.++++.+.+.....++.+||..+|-...
T Consensus 76 DvVil~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~ 114 (497)
T 2p4q_A 76 RKVMLLVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHFP 114 (497)
T ss_dssp CEEEECCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred CEEEEEcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCChh
Confidence 9999985321 23455556666655578888888886543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.011 Score=56.25 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... . ++. +..| +.+
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-----RLVL----SDVDQPALEQAVNGLRGQG-F---DAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---ceEEEEccCCCHHHHHH
Confidence 35899999999999999999999875 2443 4778888887777776432 1 111 1111 221
Q ss_pred c-------cCCCcEEEEeCCCCCC-C--CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 L-------FEDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 a-------l~dADiViitag~~rk-~--g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
. +...|++|..+|.... + ..+. ...+..|. .+.+.+.+.+.+. ...+.||+++--.
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~~ 170 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQ-GTGGHIAFTASFA 170 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECCGG
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCcEEEEeCchh
Confidence 1 2378999999887532 1 1111 23344453 3555566666664 4478888887543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.015 Score=53.73 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 74 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-----SVYT----CSRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQ 74 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 346899999999999999999999874 2443 3677777776666664321 11211 111 221
Q ss_pred --------cc-CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LF-EDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al-~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+ ...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 147 (260)
T 2ae2_A 75 ELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISSV 147 (260)
T ss_dssp HHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECCG
T ss_pred HHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 12 579999999886532 1 1121 234555544 444445555553 46788888754
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00082 Score=59.23 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--c---CcccccC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~eal~ 171 (398)
+||.|+||+|++|++++..|+..+. .|.+ .+++.+.+. ++. . .. ..+... + ...++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~----~~~--~-~~-~~~~~~D~~~~~~~~~~~~ 66 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-----EVTV----LVRDSSRLP----SEG--P-RP-AHVVVGDVLQAADVDKTVA 66 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCGGGSC----SSS--C-CC-SEEEESCTTSHHHHHHHHT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-----eEEE----EEeChhhcc----ccc--C-Cc-eEEEEecCCCHHHHHHHHc
Confidence 6899999999999999999998873 2433 245544321 000 0 10 011111 1 1235678
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++|+||.+++...... ....|......+.+.+.+. . -..+|.+|-
T Consensus 67 ~~d~vi~~a~~~~~~~-----~~~~n~~~~~~~~~~~~~~-~-~~~~v~~Ss 111 (206)
T 1hdo_A 67 GQDAVIVLLGTRNDLS-----PTTVMSEGARNIVAAMKAH-G-VDKVVACTS 111 (206)
T ss_dssp TCSEEEECCCCTTCCS-----CCCHHHHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred CCCEEEECccCCCCCC-----ccchHHHHHHHHHHHHHHh-C-CCeEEEEee
Confidence 9999999987543211 1125666777777777774 2 345666653
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0022 Score=62.04 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---- 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---- 171 (398)
.+||.|+||+|++|++++..|+..|.. .|.+ + +++..... ..++... ....++.-.....+.++
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~----~V~~--~--~r~~~~~~--~~~~~~~--~~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGIT----DILV--V--DNLKDGTK--FVNLVDL--NIADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCC----CEEE--E--ECCSSGGG--GGGTTTS--CCSEEEEHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCc----EEEE--E--ecCCCcch--hhcccCc--eEeeecCcHHHHHHHHhhccc
Confidence 468999999999999999999988731 2433 2 33322110 0111111 01111111111123333
Q ss_pred -CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 -DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 -dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|+||.+++.......+..+.+..|+.-...+.+.+.+. +. .+|.+|
T Consensus 114 ~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~--r~V~~S 162 (357)
T 2x6t_A 114 GDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYAS 162 (357)
T ss_dssp SSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEE
T ss_pred CCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEc
Confidence 6999999988654333345567888998889999888875 33 566655
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=54.93 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. +. ++.. ..| +.
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~--~~~~~~~Dv~~~~~v~~ 87 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGA-----RLVL----SGRDVSELDAARRALGEQF-GT--DVHTVAIDLAEPDAPAE 87 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-CC--CEEEEECCTTSTTHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-CC--cEEEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2443 3677788877777775421 11 1111 111 12
Q ss_pred ------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g---~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. ...+.||+++--
T Consensus 88 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 159 (266)
T 4egf_A 88 LARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAA-GEGGAIITVASA 159 (266)
T ss_dssp HHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEEcch
Confidence 22347899999988753211 122 12345553 3456666666664 457888888754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0083 Score=55.49 Aligned_cols=115 Identities=14% Similarity=0.029 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++.. ..| +.+
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 79 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT----CARNEYELNECLSKWQKKG-F---QVTGSVCDASLRPERE 79 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---eeEEEECCCCCHHHHH
Confidence 446899999999999999999999874 2443 3667677766666665321 1 1111 111 221
Q ss_pred -cc--------CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -LF--------EDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -al--------~dADiViitag~~rk-~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+ ...|+||..+|.... + ..+. ...+..|..- ++...+.+.+. ..+.||+++-.
T Consensus 80 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 152 (266)
T 1xq1_A 80 KLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSSI 152 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC--
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 12 578999999886421 1 1121 2345556543 44444444553 45777777754
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=59.54 Aligned_cols=118 Identities=13% Similarity=-0.003 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF----- 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal----- 170 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++......+..+++-..+..+.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGA-----KVVF----GDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999874 2443 367767766555555421100000110000011223
Q ss_pred --CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 171 --EDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 171 --~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 141 (260)
T 1nff_A 78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSI 141 (260)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEeeh
Confidence 379999999886532 1 1222 234555544 346666667664 46788887753
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=53.77 Aligned_cols=114 Identities=10% Similarity=-0.046 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----L 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e----a 169 (398)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++... ...++.+ ..| +.+ .
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~ 70 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGD-----RVAA----LDLSAETLEETARTHWHA---YADKVLRVRADVADEGDVNAA 70 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHSTT---TGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHH
Confidence 5789999999999999999999874 2443 367767766555555211 1112221 111 222 2
Q ss_pred c-------CCCcEEEEeCCCCCCCC------Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 F-------EDAEWALLIGAKPRGPG------MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 l-------~dADiViitag~~rk~g------~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+ .+.|+||..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (250)
T 2cfc_A 71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ--GAGVIVNIASV 143 (250)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 2 37899999988643211 111 233455543 345566666654 45778877754
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.028 Score=52.67 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .|++++.++..+.++.... .....+.. ..| +.+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 11 DRTYLVTGGGSGIGKGVAAGLVAAGA-----SVMI----VGRNPDKLAGAVQELEALG-ANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC-CSSCEEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCHHHHHH
Confidence 46899999999999999999999875 2443 3778888887777776532 11112221 111 222
Q ss_pred -------ccCCCcEEEEeCCCCC--CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~r--k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+ ...+.||+++-
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~~~g~iv~isS 151 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR--GGGGSFVGISS 151 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCcEEEEEeC
Confidence 1236799999988632 22 1122 234555543 45555666665 35788888874
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=54.00 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++++.++....++.+.. . ++.. ..| +.+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 70 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-----TVVG----TATSQASAEKFENSMKEKG-F---KARGLVLNISDIESIQ 70 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEEecCCCHHHHH
Confidence 346899999999999999999999875 2443 3677777776766665432 1 1111 111 221
Q ss_pred --------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+..-|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 71 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 142 (247)
T 3lyl_A 71 NFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK--RWGRIISIGSV 142 (247)
T ss_dssp HHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcch
Confidence 2235799999998753211 111 233455533 455555556553 56788888754
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=53.68 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Ccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPY------ 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~------ 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++.....+...-+.... .+.
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGA-----SVVL----LGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 46899999999999999999999875 2443 377878887777776543211110011111 111
Q ss_pred -----cccCCCcEEEEeCCCCC--CCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -----ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -----eal~dADiViitag~~r--k~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+ ...+.||+++-.
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~~~iv~isS~ 155 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR--SEDASIAFTSSS 155 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SSSEEEEEECCG
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--CCCCeEEEEcch
Confidence 22347899999988632 221 121 223455533 44555555555 356888888754
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0021 Score=59.09 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=68.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCc-----
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----- 166 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~----- 166 (398)
..+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.+.. .+... ..+
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~ 76 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-----KVII----SGSNEEKLKSLGNALKDNY-----TIEVCNLANKEECS 76 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCSSE-----EEEECCTTSHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhccCc-----cEEEcCCCCHHHHH
Confidence 34467899999999999999999999874 2443 3677777776666654321 11110 011
Q ss_pred --ccccCCCcEEEEeCCCCCC-C--CC---chhhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 167 --YELFEDAEWALLIGAKPRG-P--GM---ERAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 167 --~eal~dADiViitag~~rk-~--g~---~r~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+.+...|++|..+|.... + .. +-...+..|. .+.+...+.+.+. ..+.||+++-..
T Consensus 77 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~ 145 (249)
T 3f9i_A 77 NLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK--RYGRIINISSIV 145 (249)
T ss_dssp HHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEEccHH
Confidence 1233478999999886431 1 11 1223445553 3455556666553 567888887644
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0059 Score=55.64 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... +. ++.. ..| +. +
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~--~~~~~~~D~~~~~~~~~ 74 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGS-----TVII----TGTSGERAKAVAEEIANKY-GV--KAHGVEMNLLSEESINK 74 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-CC--CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHHhhc-CC--ceEEEEccCCCHHHHHH
Confidence 46899999999999999999999874 2443 3667676665555554311 10 1111 111 22 1
Q ss_pred c-------cCCCcEEEEeCCCCCCCC---Cc---hhhhHHHHHHHH----HHHHHHHHHhcCCCeEEEEECC
Q 015897 169 L-------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 a-------l~dADiViitag~~rk~g---~~---r~dll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtN 223 (398)
. +.+.|+||..+|...... .+ -.+.+..|..-. +.+.+.+.+. ..+.||+++-
T Consensus 75 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 144 (248)
T 2pnf_A 75 AFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ--RWGRIVNISS 144 (248)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 2 237999999988653211 11 123455564444 4555555553 4577887774
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0015 Score=64.05 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--c---Ccccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYEL 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~ea 169 (398)
+|+||.|+||+|++|++++..|+..|. .|.+ + +++..... .+... .. .+... + ...++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~----~~~~~--~v--~~~~~Dl~d~~~~~~~ 90 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH-----YVIA--S--DWKKNEHM----TEDMF--CD--EFHLVDLRVMENCLKV 90 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCCSSS----CGGGT--CS--EEEECCTTSHHHHHHH
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC-----eEEE--E--ECCCccch----hhccC--Cc--eEEECCCCCHHHHHHH
Confidence 578999999999999999999998763 2433 2 34322211 00000 00 11111 0 12356
Q ss_pred cCCCcEEEEeCCCCCCC---CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 170 FEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 170 l~dADiViitag~~rk~---g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. .. ..+|.+|
T Consensus 91 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~-~~~V~~S 144 (379)
T 2c5a_A 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GI-KRFFYAS 144 (379)
T ss_dssp HTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TC-SEEEEEE
T ss_pred hCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEe
Confidence 78999999998854321 2234566788988888898888874 32 3555555
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.016 Score=54.63 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... . ++. +..| +.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 94 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGV-----TVGA----LGRTRTEVEEVADEIVGAG-G---QAIALEADVSDELQMRN 94 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHTTTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHH
Confidence 35789999999999999999999875 2443 3677788887777775432 1 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCCCC--CC--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPR--GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~r--k~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+ ..+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 95 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 166 (283)
T 3v8b_A 95 AVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR--GGGAIVVVSSI 166 (283)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCceEEEEcCh
Confidence 22347899999988642 22 22222 3355554 3455566666664 46788887753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=54.24 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe----cCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~----~~~~eal~ 171 (398)
++||.|+|| |.+|..++..|...|.. .+.+ .|+++++++... +. .. ..+... ....+.++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~----~v~~----~~r~~~~~~~~~----~~--~~-~~~~~d~~~~~~~~~~~~ 68 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNY----SVTV----ADHDLAALAVLN----RM--GV-ATKQVDAKDEAGLAKALG 68 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSE----EEEE----EESCHHHHHHHH----TT--TC-EEEECCTTCHHHHHHHTT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EeCCHHHHHHHH----hC--CC-cEEEecCCCHHHHHHHHc
Confidence 569999997 99999999999988731 2433 367766665332 11 10 011111 11235678
Q ss_pred CCcEEEEeCC
Q 015897 172 DAEWALLIGA 181 (398)
Q Consensus 172 dADiViitag 181 (398)
++|+||.+.+
T Consensus 69 ~~d~vi~~~~ 78 (118)
T 3ic5_A 69 GFDAVISAAP 78 (118)
T ss_dssp TCSEEEECSC
T ss_pred CCCEEEECCC
Confidence 9999999874
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00057 Score=65.27 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-CCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dADi 175 (398)
+||+|||| |.+|..++..|...+. +|.+ + +++.+.++ +.... .. ....+..+..+++ .++|+
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~-----~V~~--~--~r~~~~~~-----~~~~~-g~-~~~~~~~~~~~~~~~~~D~ 65 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLP-----HTTL--I--GRHAKTIT-----YYTVP-HA-PAQDIVVKGYEDVTNTFDV 65 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCT-----TCEE--E--ESSCEEEE-----EESST-TS-CCEEEEEEEGGGCCSCEEE
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--E--EeccCcEE-----EEecC-Ce-eccceecCchHhcCCCCCE
Confidence 68999995 9999999999998774 3655 2 45443322 11111 11 1223334455665 89999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (398)
||++... .-+.++.+.+..+..++..||.+.|-.+....
T Consensus 66 vilavk~----------------~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~ 104 (294)
T 3g17_A 66 IIIAVKT----------------HQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH 104 (294)
T ss_dssp EEECSCG----------------GGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG
T ss_pred EEEeCCc----------------cCHHHHHHHHHHhhCCCCEEEEeccCcccHhh
Confidence 9998531 12334444555544578899999999876543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.011 Score=54.97 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... . .++. +..| +.+
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~~~~~v~~ 77 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGA-----NVAV----AGRSTADIDACVADLDQLG-S--GKVIGVQTDVSDRAQCDA 77 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTS-S--SCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhC-C--CcEEEEEcCCCCHHHHHH
Confidence 46889999999999999999999875 2444 3778888887777776432 1 1121 1111 222
Q ss_pred -------ccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPR-GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~r-k~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|... .+ ..+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 78 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 148 (262)
T 3pk0_A 78 LAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS--GSGRVVLTSSI 148 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--SSCEEEEECCS
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEech
Confidence 2337899999988642 22 12222 2345553 3456666666664 45777777643
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0038 Score=62.20 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh---hHHHHHHHHhhhcCC------CcceEEEe-c
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLFP------LLREVKIG-I 164 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~---~l~g~a~DL~d~~~~------~~~~v~i~-~ 164 (398)
.+++|.|+||+|++|++++..|+..+. .|.+ + +++.+ .++.....|.... + ....+.+. .
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~--~R~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~v~~v~~ 137 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYSH-----RIYC--F--IRADNEEIAWYKLMTNLNDYF-SEETVEMMLSNIEVIVG 137 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTEE-----EEEE--E--EECSSHHHHHHHHHHHHHHHS-CHHHHHHHHTTEEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCCC-----EEEE--E--ECCCChHHHHHHHHHHHHHhc-cccccccccCceEEEeC
Confidence 357999999999999999999966553 2332 2 34433 2332333222210 0 00111111 1
Q ss_pred C-----cccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 165 N-----PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 165 ~-----~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
| ..+++.++|+||.+++.... ..+..+....|+.-...+++.+.+ ....+|.+|
T Consensus 138 Dl~d~~~l~~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~---~~~~~v~~S 196 (427)
T 4f6c_A 138 DFECMDDVVLPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ---HHARLIYVS 196 (427)
T ss_dssp CC---CCCCCSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred CCCCcccCCCcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh---cCCcEEEEC
Confidence 1 11267899999999886532 234456778898888888888877 235555555
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.01 Score=55.12 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++.+. .| +.+
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~v~~ 95 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGA-----RVVL----TARDVEKLRAVEREIVAAG-G---EAESHACDLSHSDAIAA 95 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhC-C---ceeEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2443 3778888887777775432 1 22211 11 222
Q ss_pred -------ccCCCcEEEEeCCCCCCCC----Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 -------LFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g----~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+...|++|..+|.....+ .+. .+.+..|+ .+.+.+.+.+.+ ...+.||+++--.
T Consensus 96 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~~~g~iv~isS~~ 168 (262)
T 3rkr_A 96 FATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIA--AKRGHIINISSLA 168 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCceEEEEechh
Confidence 2245899999988632111 121 22344553 345555555665 3567888877543
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0034 Score=58.95 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=65.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-----C
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-----D 172 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-----d 172 (398)
||.|+||+|++|++++..|+..|.. .|.. + +++..... ..++.... ...++.-.....+.++ +
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~----~V~~--~--~r~~~~~~--~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~ 68 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT----DILV--V--DNLKDGTK--FVNLVDLN--IADYMDKEDFLIQIMAGEEFGD 68 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC----CEEE--E--ECCSSGGG--GHHHHTSC--CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc----EEEE--E--ccCCCCch--hhhcCcce--eccccccHHHHHHHHhccccCC
Confidence 5899999999999999999988731 2433 2 33322110 01111110 1112211111223444 4
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+|+||.+++.......+..+.+..|+.-...+.+.+.+. +. .+|.+|
T Consensus 69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~--~~v~~S 115 (310)
T 1eq2_A 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYAS 115 (310)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEE
T ss_pred CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEe
Confidence 999999988654323345567888998889999988885 33 666665
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.015 Score=52.83 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (398)
++++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... +. ++.. ..| +. +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~--~~~~~~~D~~~~~~v~~ 69 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-----ALAL----GARSVDRLEKIAHELMQEQ-GV--EVFYHHLDVSKAESVEE 69 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-CC--CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-CC--eEEEEEeccCCHHHHHH
Confidence 56899999999999999999999875 2443 3677788887777765322 11 1111 111 11 2
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+++. ++.+|+++-
T Consensus 70 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~~~ii~~sS 138 (235)
T 3l77_A 70 FSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT---GGLALVTTS 138 (235)
T ss_dssp HCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEEec
Confidence 22378999999886532 2 11222 23445533 455555555432 344455543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=48.22 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-Cc-----ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~-----~ea 169 (398)
.+||+|+|+ |.+|..++..|...+. ++.+ +|+++++++....++ .. .+.... .+ ...
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~-----~v~~----~d~~~~~~~~~~~~~-----~~--~~~~~d~~~~~~l~~~~ 66 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH-----DIVL----IDIDKDICKKASAEI-----DA--LVINGDCTKIKTLEDAG 66 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHC-----SS--EEEESCTTSHHHHHHTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHhc-----Cc--EEEEcCCCCHHHHHHcC
Confidence 368999995 9999999999988763 3543 366666655333221 10 111111 11 133
Q ss_pred cCCCcEEEEeCC
Q 015897 170 FEDAEWALLIGA 181 (398)
Q Consensus 170 l~dADiViitag 181 (398)
++++|+||++.+
T Consensus 67 ~~~~d~vi~~~~ 78 (140)
T 1lss_A 67 IEDADMYIAVTG 78 (140)
T ss_dssp TTTCSEEEECCS
T ss_pred cccCCEEEEeeC
Confidence 789999999854
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.012 Score=54.55 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++++.++....++.+.. .++.. ..| +.
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 72 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGA-----RVVI----TGRTKEKLEEAKLEIEQFP----GQILTVQMDVRNTDDIQK 72 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCST----TCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 35889999999999999999999875 2443 3778888877777765422 12221 111 22
Q ss_pred ------cccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~r-k~g--~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+- .+.. ..+..|.. +.+...+.+.+. ...+.||+++--
T Consensus 73 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 144 (257)
T 3imf_A 73 MIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEK-GIKGNIINMVAT 144 (257)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-CCCcEEEEECch
Confidence 12237899999988643 221 1221 23455543 455555555443 457888888753
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00036 Score=67.18 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc--CcCCCCCceEEEecccccchh--hHHHHHHHHhhhcCCCcceEEE-ecC----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPLLREVKI-GIN---- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~--~~~~~~~~i~L~L~d~D~~~~--~l~g~a~DL~d~~~~~~~~v~i-~~~---- 165 (398)
.|+||.|+||+|++|++++..|+.. +. .|.. + +++.. ..+ ...++.+ ..+.+ ..|
T Consensus 3 ~m~~vlVTGatG~iG~~l~~~L~~~~~g~-----~V~~--~--~r~~~~~~~~-~~~~~~~------~~~~~~~~Dl~d~ 66 (348)
T 1oc2_A 3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDV-----HVTV--L--DKLTYAGNKA-NLEAILG------DRVELVVGDIADA 66 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTC-----EEEE--E--ECCCTTCCGG-GTGGGCS------SSEEEEECCTTCH
T ss_pred cCcEEEEeCCccHHHHHHHHHHHHhCCCC-----EEEE--E--eCCCCCCChh-HHhhhcc------CCeEEEECCCCCH
Confidence 3679999999999999999999987 32 2432 2 33211 100 1111111 11211 111
Q ss_pred --cccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 --PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 --~~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..++++++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. + +.+|.+|
T Consensus 67 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~--~~~v~~S 124 (348)
T 1oc2_A 67 ELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D--IRFHHVS 124 (348)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred HHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEec
Confidence 235678899999998864210 0123456778888888888888875 2 3666665
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0022 Score=61.46 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=52.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+||||+|.+|..++..|...|. .|.+ + |++++. +..+++++||+|
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-----~V~~--~--~~~~~~-----------------------~~~~~~~~aDvV 69 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-----PISI--L--DREDWA-----------------------VAESILANADVV 69 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-----CEEE--E--CTTCGG-----------------------GHHHHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----eEEE--E--ECCccc-----------------------CHHHHhcCCCEE
Confidence 5899999449999999999998775 2544 3 444321 245677899999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|++...+ .+.++.+.+..+..++++|+.++.
T Consensus 70 ilavp~~----------------~~~~vl~~l~~~l~~~~iv~~~~s 100 (298)
T 2pv7_A 70 IVSVPIN----------------LTLETIERLKPYLTENMLLADLTS 100 (298)
T ss_dssp EECSCGG----------------GHHHHHHHHGGGCCTTSEEEECCS
T ss_pred EEeCCHH----------------HHHHHHHHHHhhcCCCcEEEECCC
Confidence 9986321 244455556554456777666543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0047 Score=57.08 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-------ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~e 168 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++......+..+++-..+ -.+
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGA-----TVIV----SDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999875 2443 3677777776666652211001011100000 112
Q ss_pred ccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. ...+.||+++--
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 141 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAA-GKAGRVISIASN 141 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCT
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCcEEEEECch
Confidence 2347899999988653 22 1122 223455543 455556667775 446888888754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0095 Score=54.72 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEE-EecC--ccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVK-IGIN--PYE--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e--- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .++ ++++++..+.++.... . ++. +..| +.+
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 70 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGA-----NVVV----NYAGNEQKANEVVDEIKKLG-S---DAIAVRADVANAEDVT 70 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHH
Confidence 45899999999999999999999874 2443 245 6666666666665321 1 111 1111 222
Q ss_pred --------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk~g---~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|...... .+. ...+..|..- .+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 142 (246)
T 2uvd_A 71 NMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ--RHGRIVNIASV 142 (246)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCH
Confidence 1237899999988653211 121 2345555443 56666666664 45788887754
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0041 Score=56.98 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc-----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL----- 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea----- 169 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... ..-+..-..+.+.
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~~~~~~ 77 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-----RLIL----IDREAAALDRAAQELGAAV---AARIVADVTDAEAMTAAA 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGE---EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccc---eeEEEEecCCHHHHHHHH
Confidence 346899999999999999999999874 2443 3677676665555542110 0000000011211
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 -----FEDAEWALLIGAKPRGP---GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 -----l~dADiViitag~~rk~---g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.|+||..+|..... ..+. .+.+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 78 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 145 (254)
T 2wsb_A 78 AEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR--GAGAIVNLGSM 145 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEecc
Confidence 35789999998865321 1111 2345555443 55555666654 46778887754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0033 Score=57.14 Aligned_cols=45 Identities=27% Similarity=0.206 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
|++|.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 45 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGK-----ATYL----TGRSESKLSTVTNCL 45 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHHTC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 45799999999999999999999885 2544 367777777666554
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00057 Score=64.96 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=64.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
..++++|.|+||+|++|++++..|+..|. .|.+ + +++... +. + ... ....++.-.....+++++
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~--~r~~~~-~~----l-~~~-~~~~Dl~d~~~~~~~~~~ 72 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-----EVFG--T--SRNNEA-KL----P-NVE-MISLDIMDSQRVKKVISD 72 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCTTC-CC----T-TEE-EEECCTTCHHHHHHHHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--ecCCcc-cc----c-eee-EEECCCCCHHHHHHHHHh
Confidence 45678999999999999999999998764 2433 2 444322 10 1 000 000000000011234444
Q ss_pred --CcEEEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 173 --AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 173 --ADiViitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.|+||.+++.... ...+..+.+..|+.-...+.+.+.+. ...+.+|.+|-
T Consensus 73 ~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS 126 (321)
T 2pk3_A 73 IKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDS-NLDCRILTIGS 126 (321)
T ss_dssp HCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEEEE
T ss_pred cCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcc
Confidence 8999999886421 11234567788888888888888664 33566666663
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.018 Score=54.18 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc----c---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----E--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----e--- 168 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... ....-+..-..+. +
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~ 101 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGA-----QVAV----AARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGMLD 101 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999875 2443 3677777777777776432 1110111101111 1
Q ss_pred ----ccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 ----LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 ----al~dADiViitag~~rk~g---~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ..++.||+++-
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~~g~iv~isS 169 (276)
T 3r1i_A 102 QMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQ-GLGGTIITTAS 169 (276)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEECc
Confidence 2237899999988753221 1222 2344553 3556666666664 34578888764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00049 Score=66.23 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--c----c
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----Y 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~----~ 167 (398)
+|+||.|+||+|++|++++..|+..|. .|.+ + +++..... ..+.+ . ..+. +..| + .
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~---~~l~~----~-~~~~~~~~Dl~d~~~~~ 82 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGD-----KVVG--I--DNFATGRR---EHLKD----H-PNLTFVEGSIADHALVN 82 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCG---GGSCC----C-TTEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE--E--ECCCccch---hhHhh----c-CCceEEEEeCCCHHHHH
Confidence 478999999999999999999998773 2433 2 33322110 01111 0 1111 1111 2 2
Q ss_pred cccCC--CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~d--ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+++++ +|+||.+++.......+..+ +..|+.-...+.+.+.+. + -+.+|++|-
T Consensus 83 ~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~-~-~~~iV~~SS 137 (333)
T 2q1w_A 83 QLIGDLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKN-N-VGRFVYFQT 137 (333)
T ss_dssp HHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHT-T-CSEEEEEEE
T ss_pred HHHhccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHh-C-CCEEEEECc
Confidence 44556 99999998865322222223 777888888888888774 2 345666653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=54.63 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... . ++.. ..| +.+
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~ 72 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-----TVFA----GRRNGEKLAPLVAEIEAAG-G---RIVARSLDARNEDEVT 72 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHHHTT-C---EEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---eEEEEECcCCCHHHHH
Confidence 346899999999999999999999875 2443 3677788887777776432 1 2211 111 222
Q ss_pred -cc------CCCcEEEEeCCCCCC-C--CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -LF------EDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -al------~dADiViitag~~rk-~--g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+ ...|++|..+|.... + ..+. ...+..|. .+.+.+.+.+.+. ..+.||+++-
T Consensus 73 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 142 (252)
T 3h7a_A 73 AFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH--GQGKIFFTGA 142 (252)
T ss_dssp HHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred HHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 22 256999999886532 1 1122 12345553 3556666666664 4677777764
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0054 Score=60.09 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=65.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhH----------------HHHHHHHhhhcCC
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL----------------EGVAMELEDSLFP 155 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l----------------~g~a~DL~d~~~~ 155 (398)
..+++++|.|+||+|+||++++..|+..|. .|.+ + |++.... .....++.+.. .
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 76 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNY-----EVCI--V--DNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-G 76 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-C
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCC-----eEEE--E--EecCccccccccccccccccchhhhhhhhHhhcc-C
Confidence 346689999999999999999999998774 2433 2 3321110 00111111111 0
Q ss_pred CcceEE-EecC--c----ccccCC--CcEEEEeCCCCCCC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEE
Q 015897 156 LLREVK-IGIN--P----YELFED--AEWALLIGAKPRGP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (398)
Q Consensus 156 ~~~~v~-i~~~--~----~eal~d--ADiViitag~~rk~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (398)
..+. +..| + .+++++ +|+||.+++....+ ..+. ...+..|+.-...+.+.+.+. +....+|.+
T Consensus 77 --~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~ 153 (404)
T 1i24_A 77 --KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKL 153 (404)
T ss_dssp --CCCEEEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEE
T ss_pred --CceEEEECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 0111 1111 2 234555 99999998864211 1111 135677888888888888876 333467777
Q ss_pred CC
Q 015897 222 GN 223 (398)
Q Consensus 222 tN 223 (398)
|-
T Consensus 154 SS 155 (404)
T 1i24_A 154 GT 155 (404)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.017 Score=53.57 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=70.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .|++.+.++..+.++.+.. . ++. +..| +.
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~d~~~v~~ 78 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGA-----SVVV----TDLKSEGAEAVAAAIRQAG-G---KAIGLECNVTDEQHREA 78 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTC-----EEEE----EESSHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 2443 3677788877777776432 1 111 1111 12
Q ss_pred ------cccCCCcEEEEeCCCCCC-C-CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P-GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~-g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 79 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 148 (256)
T 3gaf_A 79 VIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA--GGGAILNISSM 148 (256)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcCH
Confidence 122378999999886532 2 22222 2344453 3455556666663 56888888754
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0044 Score=60.51 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| +|.+|.+++..|...|. .|.+ + |++.+.....+.+. . +... +..+++++||+
T Consensus 16 ~~~I~IIG-~G~mG~alA~~L~~~G~-----~V~~--~--~~~~~~~~~~a~~~-----G----~~~~-~~~e~~~~aDv 75 (338)
T 1np3_A 16 GKKVAIIG-YGSQGHAHACNLKDSGV-----DVTV--G--LRSGSATVAKAEAH-----G----LKVA-DVKTAVAAADV 75 (338)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CCTTCHHHHHHHHT-----T----CEEE-CHHHHHHTCSE
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCcC-----EEEE--E--ECChHHHHHHHHHC-----C----CEEc-cHHHHHhcCCE
Confidence 46899999 59999999999998774 2543 3 45444422233221 1 1233 55678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHH-HHHHhcCCCeEEEEE
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGK-ALNAVASRNVKVIVV 221 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~-~i~~~a~p~a~vIvv 221 (398)
||++... ....++.+ .+..+..|+++|+.+
T Consensus 76 Vilavp~----------------~~~~~v~~~~i~~~l~~~~ivi~~ 106 (338)
T 1np3_A 76 VMILTPD----------------EFQGRLYKEEIEPNLKKGATLAFA 106 (338)
T ss_dssp EEECSCH----------------HHHHHHHHHHTGGGCCTTCEEEES
T ss_pred EEEeCCc----------------HHHHHHHHHHHHhhCCCCCEEEEc
Confidence 9998531 22344554 555544567766644
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0022 Score=60.76 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=51.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (398)
+||.|+||+|++|++++..|+..|. .|.. + +++.+.-.-...|+.+ .....++++ +.|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~Dl~d-----------~~~~~~~~~~~~~d 62 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNW-----HAVG--C--GFRRARPKFEQVNLLD-----------SNAVHHIIHDFQPH 62 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--E--C-----------------------------CHHHHHHHCCS
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCC-----eEEE--E--ccCCCCCCeEEecCCC-----------HHHHHHHHHhhCCC
Confidence 5899999999999999999998773 2433 2 3332210011122221 112334455 489
Q ss_pred EEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||.+++..... ..+..+.+..|+.-...+.+.+.+. + +.+|.+|-
T Consensus 63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~SS 110 (315)
T 2ydy_A 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-G--AFLIYISS 110 (315)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHHH-T--CEEEEEEE
T ss_pred EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEch
Confidence 999998864311 1234456777888888888888875 3 46666653
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.018 Score=53.27 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... + .++. +..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGA-----HIVL----VARQVDRLHEAARSLKEKF-G--VRVLEVAVDVATPEGVDA 74 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHHhc-C--CceEEEEcCCCCHHHHHH
Confidence 45899999999999999999999874 2443 3677777766666664321 0 0111 1111 121
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (263)
T 3ai3_A 75 VVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR--GGGAIIHNASI 145 (263)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 22378999999886531 1 1122 223444533 455555566553 45778887754
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.02 Score=52.85 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Ccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPY------ 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~------ 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .++++++++..+.++.+.......-+..-. .+.
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGA-----TVIL----LGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHH
Confidence 45899999999999999999999875 2443 367878887777776643211110111100 111
Q ss_pred -----cccCCCcEEEEeCCCC--CCC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 -----ELFEDAEWALLIGAKP--RGP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 -----eal~dADiViitag~~--rk~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|++|..+|.. ..+ ..+.. ..+..|.. +.+.+.+.+.+ ...+.||+++--.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~--~~~g~iv~isS~~ 154 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLK--SDAGSLVFTSSSV 154 (252)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--SSSCEEEEECCGG
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH--CCCCEEEEECChh
Confidence 2234789999998863 222 12222 23555543 45555566665 3567788877543
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00072 Score=63.24 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (398)
|||.|+||+|++|++++..|+..|. .|.. + ++.+ .|+.+.. ...++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~-------~D~~d~~-----------~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY-----DIYP--F--DKKL-------LDITNIS-----------QVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE-----EEEE--E--CTTT-------SCTTCHH-----------HHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--e--cccc-------cCCCCHH-----------HHHHHHHhcCCC
Confidence 3899999999999999999988764 2332 2 3311 1221111 1123333 689
Q ss_pred EEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.+++..... ..+..+....|+.-...+.+.+.+. + +.+|.+|
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 105 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-G--AKLVYIS 105 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999998765321 1345567888988889999988886 3 3566665
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=60.31 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec------Cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~e 168 (398)
|++|.|+||+|.+|.+++..|+..|-. .|.+ .+++.+.+.. +. . ..+.+ .. +..+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~----~V~~----~~R~~~~~~~----~~----~--~~~~~~~~Dl~d~~~~~~ 84 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTI----KQTL----FARQPAKIHK----PY----P--TNSQIIMGDVLNHAALKQ 84 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTE----EEEE----EESSGGGSCS----SC----C--TTEEEEECCTTCHHHHHH
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCc----eEEE----EEcChhhhcc----cc----c--CCcEEEEecCCCHHHHHH
Confidence 568999999999999999999988721 2433 2455443321 11 1 01111 11 1235
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+++++|+||.+++... .+ ...+.+.+.+++. .-+.+|+++-
T Consensus 85 ~~~~~D~vv~~a~~~~------~~------~~~~~~~~~~~~~--~~~~iV~iSS 125 (236)
T 3qvo_A 85 AMQGQDIVYANLTGED------LD------IQANSVIAAMKAC--DVKRLIFVLS 125 (236)
T ss_dssp HHTTCSEEEEECCSTT------HH------HHHHHHHHHHHHT--TCCEEEEECC
T ss_pred HhcCCCEEEEcCCCCc------hh------HHHHHHHHHHHHc--CCCEEEEEec
Confidence 6889999998876421 11 1234566666664 3456776664
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0083 Score=55.80 Aligned_cols=114 Identities=19% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ . .+++.+.++..+.++.+.. .++.. ..| +.
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~-----~vv~--~-~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 71 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGY-----NIVI--N-YARSKKAALETAEEIEKLG----VKVLVVKANVGQPAKIKE 71 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--E-ESSCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999875 2443 1 2567777777777765432 11211 111 22
Q ss_pred ------cccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ------ELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ------eal~dADiViitag~~r-k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+..-|++|..+|... .+ ..+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 141 (258)
T 3oid_A 72 MFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN--GGGHIVSISS 141 (258)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECc
Confidence 12235699999988643 22 11222 23555543 455555666653 4677887764
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0031 Score=57.29 Aligned_cols=114 Identities=22% Similarity=0.163 Sum_probs=65.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------PY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~~ 167 (398)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .. ...++. + -.
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~--~~D~~~~~~~~~~~~~~~ 73 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY-----RVGL----MARDEKRLQALAAELEGAL-PL--PGDVREEGDWARAVAAME 73 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EE--ECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhhce-EE--EecCCCHHHHHHHHHHHH
Confidence 4799999999999999999999874 2443 3666666665544432111 00 001110 0 01
Q ss_pred cccCCCcEEEEeCCCCCC-C--CCc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ELFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 eal~dADiViitag~~rk-~--g~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.+.|+||..+|.... + ..+ -.+.+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 74 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 138 (234)
T 2ehd_A 74 EAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR--GGGTIVNVGSL 138 (234)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCT
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCcEEEEECCc
Confidence 123478999999886431 1 111 1234555544 345555666553 46788888754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.022 Score=52.97 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--c------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------ 166 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... +. ..+. +..| +
T Consensus 10 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~D~~~~~~~~~ 78 (267)
T 3t4x_A 10 GKTALVTGSTAGIGKAIATSLVAEGA-----NVLI----NGRREENVNETIKEIRAQY-PD-AILQPVVADLGTEQGCQD 78 (267)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHC-TT-CEEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEecCCCCHHHHHH
Confidence 35889999999999999999999875 2444 3677788777777766432 11 1111 1111 1
Q ss_pred -ccccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 -YELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 -~eal~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|...... .+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 79 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (267)
T 3t4x_A 79 VIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIASE 145 (267)
T ss_dssp HHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TEEEEEEECCG
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEEcch
Confidence 233457899999988653211 1222 23555544 366666677663 56888888754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.018 Score=53.14 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=68.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----L 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e----a 169 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... . ++. +..| +.+ .
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~v~~~ 69 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAG-G---HAVAVKVDVSDRDQVFAA 69 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHHHH
Confidence 4789999999999999999999874 2443 3677777776666665321 1 111 1111 222 2
Q ss_pred -------cCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 -------FEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 -------l~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ...+.||+++--
T Consensus 70 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 140 (256)
T 1geg_A 70 VEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACSQ 140 (256)
T ss_dssp HHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCEEEEECch
Confidence 2378999999886432 1 1122 123555543 456666666664 236788887754
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00088 Score=62.25 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||.|+||+|++|++++..|+..+. .|.+ + +++.+.. +......+..++.-.....+++++.|+|
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~d~v 67 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAH-----EVRL--S--DIVDLGA------AEAHEEIVACDLADAQAVHDLVKDCDGI 67 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEE-----EEEE--C--CSSCCCC------CCTTEEECCCCTTCHHHHHHHHTTCSEE
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCCCccc------cCCCccEEEccCCCHHHHHHHHcCCCEE
Confidence 5899999999999999999988763 2432 2 4443221 0000000000110001123567889999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|.+++.. ...+..+.+..|..-...+.+.+.+. ....+|++|
T Consensus 68 i~~a~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~S 109 (267)
T 3ay3_A 68 IHLGGVS--VERPWNDILQANIIGAYNLYEAARNL--GKPRIVFAS 109 (267)
T ss_dssp EECCSCC--SCCCHHHHHHHTHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EECCcCC--CCCCHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEeC
Confidence 9998864 22233456778888888888888774 334566555
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0032 Score=58.38 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------ 169 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++++.++..+.++.... .-+..-..+.++
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~~ 71 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVL----ADVLDEEGAATARELGDAA----RYQHLDVTIEEDWQRVVA 71 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTGGGE----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce----eEEEecCCCHHHHHHHHH
Confidence 35899999999999999999999875 2443 3677676665554442111 001000112222
Q ss_pred -----cCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 -----FEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 -----l~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+++. ..+.||+++--
T Consensus 72 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 139 (254)
T 1hdc_A 72 YAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSA 139 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 2379999999886532 1 1121 233555533 445667777664 46788888754
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.019 Score=52.88 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... . ++. +..| +.+
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~~~~~~~~ 73 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGA-----AVAI----AARRVEKLRALGDELTAAG-A---KVHVLELDVADRQGVDA 73 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHHH
Confidence 35899999999999999999999875 2443 3677777776666665321 1 111 1111 222
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+.. ..+..|.. +.+...+.+.+. . +.||+++--
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS~ 143 (247)
T 2jah_A 74 AVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS--K-GTVVQMSSI 143 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--C-CEEEEEccH
Confidence 23478999999886532 1 12222 23555543 445555555553 3 778887753
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.013 Score=53.56 Aligned_cols=114 Identities=10% Similarity=0.019 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++... .++.. ..| +.+
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~ 71 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGA-----KVMI----TGRHSDVGEKAAKSVGTP-----DQIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhcc-----CceEEEECCCCCHHHHHH
Confidence 35899999999999999999999874 2443 366666666555554321 11111 111 121
Q ss_pred -------ccCCCcEEEEeCCCCCCC---CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRGP---GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk~---g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|+||..+|..... ..+. ...+..|.. +.+.+.+.+.+. ...+.||+++..
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~isS~ 143 (251)
T 1zk4_A 72 LFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSI 143 (251)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCCc
Confidence 123589999998865321 1121 234666655 555566666553 222788888754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.015 Score=54.65 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc---
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~--- 167 (398)
.+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v 88 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-----AVYG----CARDAKNVSAAVDGLRAAG----HDVDGSSCDVTSTDEV 88 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHH
Confidence 3456899999999999999999999875 2443 3677788887777776432 11211 111 22
Q ss_pred --------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHH----HHHHHH--HHHHhcCCCeEEEEECCC
Q 015897 168 --------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGK--ALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 --------eal~dADiViitag~~rk~g---~~r---~dll~~N~~i----~~~i~~--~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+. .+.+..|+.- .+.+.+ .+.+. ..+.||+++-.
T Consensus 89 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~~g~iV~isS~ 163 (279)
T 3sju_A 89 HAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREA--GWGRIVNIAST 163 (279)
T ss_dssp HHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhc--CCcEEEEECCh
Confidence 12336799999988653211 122 2335556443 333333 23432 45788888754
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.021 Score=52.93 Aligned_cols=116 Identities=15% Similarity=0.019 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~ea--- 169 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.+.. . ..++. +..| +.+.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~D~~~~~~v~~ 75 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGA-----KVAL----VDWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRD 75 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhc-C-CCceEEEecCCCCHHHHHH
Confidence 35899999999999999999999874 2443 3667666665555554321 0 11122 1111 2221
Q ss_pred --------cCCCcEEEEeCCCCCCCCCchhhhHHHHHH----HHHHHHHHHHHhc-CCCeEEEEECCC
Q 015897 170 --------FEDAEWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVA-SRNVKVIVVGNP 224 (398)
Q Consensus 170 --------l~dADiViitag~~rk~g~~r~dll~~N~~----i~~~i~~~i~~~a-~p~a~vIvvtNP 224 (398)
+...|++|..+|.... .+-.+.+..|.. ..+.+.+.+.+.. .+.+.||+++-.
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 141 (267)
T 2gdz_A 76 TFRKVVDHFGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 141 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence 2357999999886421 222344556644 5666677776531 125788888754
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0015 Score=60.70 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+|+||+||| +|.+|..++..|...+. .+.+ + |+++++++....++. +..+.+..+.++++|
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~-----~v~~--~--~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPH-----ELII--S--GSSLERSKEIAEQLA---------LPYAMSHQDLIDQVD 62 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSC-----EEEE--E--CSSHHHHHHHHHHHT---------CCBCSSHHHHHHTCS
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE--E--CCCHHHHHHHHHHcC---------CEeeCCHHHHHhcCC
Confidence 357999999 59999999999887662 2443 3 677776664443321 112345567788999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||++..
T Consensus 63 ~Vi~~v~ 69 (259)
T 2ahr_A 63 LVILGIK 69 (259)
T ss_dssp EEEECSC
T ss_pred EEEEEeC
Confidence 9999853
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0086 Score=55.40 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEE-EecC--cc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVK-IGIN--PY--- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~--- 167 (398)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .++ +.+.++....++.... . ++. +..| +.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~l~~~~-~---~~~~~~~D~~~~~~~ 86 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA-----SVVV----NYGSSSKAAEEVVAELKKLG-A---QGVAIQADISKPSEV 86 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EcCCchHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHH
Confidence 346899999999999999999999874 2443 244 5566665556655321 1 111 1111 22
Q ss_pred -ccc-------CCCcEEEEeCCCCCCC---CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -ELF-------EDAEWALLIGAKPRGP---GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -eal-------~dADiViitag~~rk~---g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+ .+.|+||..+|..... ..+. .+.+..|..-...+.+.+.+....++.||+++--
T Consensus 87 ~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~ 157 (274)
T 1ja9_A 87 VALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI 157 (274)
T ss_dssp HHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcCh
Confidence 222 2789999988865311 1121 2456667666666666555542224677777643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=55.72 Aligned_cols=114 Identities=16% Similarity=0.066 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|..++..|+..|. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~ 110 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISE 110 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CceeEEECCCCCHHHHHH
Confidence 45899999999999999999998764 2443 3566667766666665321 11111 111 222
Q ss_pred -------ccCCCcEEEEeCCCCCCC---CCc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRGP---GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk~---g~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|+||..+|..... ..+ -.+.+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 111 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 181 (285)
T 2c07_A 111 VINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSI 181 (285)
T ss_dssp HHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 234789999998865321 112 12345555443 55555555553 45788888754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00068 Score=64.69 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc----ccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~----~eal~ 171 (398)
|+||.|+||+|++|++++..|+..|. .|.. + +++..... ..+.. .. .-+..-..+ .++++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~---~~~~~---~~-~~~~~D~~~~~~~~~~~~ 64 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL-----SVVV--V--DNLQTGHE---DAITE---GA-KFYNGDLRDKAFLRDVFT 64 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCG---GGSCT---TS-EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE--E--eCCCcCch---hhcCC---Cc-EEEECCCCCHHHHHHHHh
Confidence 57999999999999999999998763 2432 2 33221111 11111 00 001110111 23455
Q ss_pred --CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 --DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 --dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. .-..+|.+|-
T Consensus 65 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~Ss 118 (330)
T 2c20_A 65 QENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF--KVDKFIFSST 118 (330)
T ss_dssp HSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred hcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc--CCCEEEEeCC
Confidence 899999998754211 0133456778888888888888774 2345666664
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.003 Score=59.77 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=45.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|.+|..++..|...+. +|.+ + |++.++++... +. .+.+..+..++++++|+|
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~~----~~------g~~~~~~~~~~~~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHGY-----PLII--Y--DVFPDACKEFQ----DA------GEQVVSSPADVAEKADRI 60 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHHH----TT------TCEECSSHHHHHHHCSEE
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHH----Hc------CCeecCCHHHHHhcCCEE
Confidence 4899999 59999999999998774 3544 3 66666655322 11 133445566778899999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 61 i~~v 64 (296)
T 2gf2_A 61 ITML 64 (296)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9985
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0027 Score=58.63 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc----ccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----ELF 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----eal 170 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .-+..-..+. +.+
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~~~~~v~~~~ 77 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA-----SAVL----LDLPNSGGEAQAKKLGNNC----VFAPADVTSEKDVQTAL 77 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSSHHHHHHHHCTTE----EEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCcHhHHHHHHHhCCce----EEEEcCCCCHHHHHHHH
Confidence 446899999999999999999999874 2443 3566666665555542111 0010000112 222
Q ss_pred -------CCCcEEEEeCCCC
Q 015897 171 -------EDAEWALLIGAKP 183 (398)
Q Consensus 171 -------~dADiViitag~~ 183 (398)
...|+||..+|..
T Consensus 78 ~~~~~~~g~id~li~~Ag~~ 97 (265)
T 2o23_A 78 ALAKGKFGRVDVAVNCAGIA 97 (265)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHCCCCCEEEECCccC
Confidence 2799999998865
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0045 Score=57.21 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++++.++..+.++.+....+ ...++. + .
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~--~~Dv~d~~~v~~~~~~~ 77 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGA-----KVIG----TATSESGAQAISDYLGDNGKGM--ALNVTNPESIEAVLKAI 77 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEEEE--ECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccceEE--EEeCCCHHHHHHHHHHH
Confidence 46889999999999999999999875 2443 3677777776666654322000 011110 0 1
Q ss_pred ccccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 142 (248)
T 3op4_A 78 TDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK--RQGRIINVGS 142 (248)
T ss_dssp HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 122337899999988753211 122 223555533 455566666653 4678888774
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.017 Score=54.24 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .. ++. +..| +.
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~--~~~~~~~Dv~~~~~v~~ 94 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGC-----HTVI----ASRSLPRVLTAARKLAGAT-GR--RCLPLSMDVRAPPAVMA 94 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHHH-SS--CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-CC--cEEEEEcCCCCHHHHHH
Confidence 46899999999999999999998875 2444 3677777776766665322 11 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+ ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 95 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 165 (277)
T 4fc7_A 95 AVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD--HGGVIVNITAT 165 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECCS
T ss_pred HHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 22347899999988643 22 1121 223555544 344444444443 46788888754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0058 Score=56.69 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----e 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... +- .++. +..| +. +
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGA-----RLLL----FSRNREKLEAAASRIASLV-SG-AQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHS-TT-CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CC-CeEEEEEccCCCHHHHHH
Confidence 46899999999999999999999874 2443 3677777776666665320 00 0111 1111 12 2
Q ss_pred ccC------CCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFE------DAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~------dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.++ +.|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK--GWGRMVYIGSV 145 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECch
Confidence 222 4899999988653211 111 223444543 346666666663 45778887753
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0039 Score=58.84 Aligned_cols=117 Identities=10% Similarity=0.033 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N------- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~------- 165 (398)
+.+++.|+||+|.||.+++..|+..|. .|.+ .|++++.++..+.++....... ...++. +
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~--~~Dv~d~~~v~~~~~~ 94 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-----YVVV----ADVNEDAAVRVANEIGSKAFGV--RVDVSSAKDAESMVEK 94 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHCTTEEEE--ECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCceEEE--EecCCCHHHHHHHHHH
Confidence 346899999999999999999999875 2443 3677777766665542111000 011110 0
Q ss_pred cccccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 PYELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
..+.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 95 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 161 (277)
T 4dqx_A 95 TTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN--GGGSIINTTSY 161 (277)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--TCEEEEEECCG
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 11223478999999886532 1 1222 223555543 345555555552 46788888754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.017 Score=54.35 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... + .++.+ ..| +.+
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~~~ 93 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGA-----QCVI----ASRKMDVLKATAEQISSQT-G--NKVHAIQCDVRDPDMVQN 93 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CceEEEEeCCCCHHHHHH
Confidence 46899999999999999999999874 2443 3677777776666665431 1 11211 111 222
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|+||.++|.... + ..+ -...+..|+.- .+.+.+.+.+. ...+.+|+++--
T Consensus 94 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS~ 165 (302)
T 1w6u_A 94 TVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA-QKGAAFLSITTI 165 (302)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCCEEEEEccc
Confidence 12355999999886431 1 112 12345555443 34444444432 356788887753
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.026 Score=52.66 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++.... . ++. +..| +.+
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~ 87 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGA-----RVYT----CSRNEKELDECLEIWREKG-L---NVEGSVCDLLSRTERDK 87 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 2443 3677777776666665321 1 111 1111 111
Q ss_pred -------cc-CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 -------LF-EDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 -------al-~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+ ...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.||+++...
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~ 160 (273)
T 1ae1_A 88 LMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIA 160 (273)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGG
T ss_pred HHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCHh
Confidence 22 578999999886532 1 1122 223445543 445555555553 467888887543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.026 Score=52.68 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc------------hhhHHHHHHHHhhhcCCCcceEEE-
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS------------LQALEGVAMELEDSLFPLLREVKI- 162 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~------------~~~l~g~a~DL~d~~~~~~~~v~i- 162 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . |++ .+.++....++.+.. . ++..
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 79 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGA-----DIIA--V--DLCDQIASVPYPLATPEELAATVKLVEDIG-S---RIVAR 79 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-C---CEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE--E--ecccccccccccccchHHHHHHHHHHHhcC-C---eEEEE
Confidence 45899999999999999999999875 2433 3 333 556665555554432 1 1111
Q ss_pred ecC--ccc-----------ccCCCcEEEEeCCCCC-CCCCc-hhhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 163 GIN--PYE-----------LFEDAEWALLIGAKPR-GPGME-RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 163 ~~~--~~e-----------al~dADiViitag~~r-k~g~~-r~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..| +.+ .+...|++|..+|... .+..+ -...+..|. .+.+...+.+.+. ...+.||+++-
T Consensus 80 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS 158 (278)
T 3sx2_A 80 QADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQ-GTGGSIVLISS 158 (278)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECC
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEcc
Confidence 111 121 2237899999998753 22111 123455553 3555666666664 45788888875
Q ss_pred C
Q 015897 224 P 224 (398)
Q Consensus 224 P 224 (398)
-
T Consensus 159 ~ 159 (278)
T 3sx2_A 159 S 159 (278)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0025 Score=62.10 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=57.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc--hhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~--~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
|||.|+||+|++|++++..|+..+.. .+..+ |++ .+. ..++++++|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~------~v~~~--d~~~d~~~------------------------l~~~~~~~d 48 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDH------HIFEV--HRQTKEEE------------------------LESALLKAD 48 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC------EEEEC--CTTCCHHH------------------------HHHHHHHCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC------EEEEE--CCCCCHHH------------------------HHHHhccCC
Confidence 58999999999999999999988741 22223 442 111 122334689
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.+++..+. .+..+....|+.....+.+.+++. +....+|.+|
T Consensus 49 ~Vih~a~~~~~--~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~S 93 (369)
T 3st7_A 49 FIVHLAGVNRP--EHDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSS 93 (369)
T ss_dssp EEEECCCSBCT--TCSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEE
T ss_pred EEEECCcCCCC--CCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeC
Confidence 99998876432 122334455666777777777774 3444566555
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.016 Score=54.34 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++++.++..+.++.+..... ..+..-..+.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGA-----MVIG----TATTEAGAEGIGAAFKQAGLEG-RGAVLNVNDATAVDALVE 97 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHTCCC-EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcE-EEEEEeCCCHHHHHHHHH
Confidence 35788899999999999999999875 2443 3677777777777766432111 0111101111
Q ss_pred ---cccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ---ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ---eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 164 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA--RGGRIVNITS 164 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECc
Confidence 223478999999886532 1 1122 223555543 455555566553 5688888874
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.002 Score=60.80 Aligned_cols=105 Identities=12% Similarity=-0.014 Sum_probs=60.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--c---Cccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~eal 170 (398)
+++|.|+||+|++|++++..|+..+-. .|.. ++++.+.... .++.... . .+... + ...+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~----~~R~~~~~~~--~~l~~~~--~--~~~~~D~~d~~~l~~~~ 70 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF----KVRV----VTRNPRKKAA--KELRLQG--A--EVVQGDQDDQVIMELAL 70 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS----EEEE----EESCTTSHHH--HHHHHTT--C--EEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc----eEEE----EEcCCCCHHH--HHHHHCC--C--EEEEecCCCHHHHHHHH
Confidence 468999999999999999999986611 2433 2455444321 2222211 0 11111 1 123578
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+++|+||.+++..... ....|....+.+.+.+.+. +. ..+|..|
T Consensus 71 ~~~d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~-gv-~~iv~~S 114 (299)
T 2wm3_A 71 NGAYATFIVTNYWESC------SQEQEVKQGKLLADLARRL-GL-HYVVYSG 114 (299)
T ss_dssp TTCSEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHH-TC-SEEEECC
T ss_pred hcCCEEEEeCCCCccc------cchHHHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 8999999987632100 1345666677777777774 32 3455544
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=63.00 Aligned_cols=112 Identities=14% Similarity=-0.010 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH-HHHHHHhhhcCCCcceEEEec-C--c----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGI-N--P----Y 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~-g~a~DL~d~~~~~~~~v~i~~-~--~----~ 167 (398)
.+||.|+||+|++|++++..|+..|. .|.+ + +++.+.+. ....++.. ...+.... | + .
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~ 68 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-----EVYG--A--DRRSGEFASWRLKELGI-----ENDVKIIHMDLLEFSNII 68 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--CSCCSTTTTHHHHHTTC-----TTTEEECCCCTTCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--ECCCcccccccHhhccc-----cCceeEEECCCCCHHHHH
Confidence 36899999999999999999998774 2433 2 44433221 11111110 01122111 1 2 2
Q ss_pred cccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 168 eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+++++ .|+||.+++..... ..+....+..|+.-...+.+.+.+. ...+.+|++|
T Consensus 69 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 126 (345)
T 2z1m_A 69 RTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQAS 126 (345)
T ss_dssp HHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred HHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEe
Confidence 34444 59999998864211 1234456777888888888888775 3335666665
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.025 Score=52.27 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++. +..| +.+
T Consensus 14 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~D~~~~~~~~~ 80 (260)
T 2zat_A 14 NKVALVTASTDGIGLAIARRLAQDGA-----HVVV----SSRKQENVDRTVATLQGEG-L---SVTGTVCHVGKAEDRER 80 (260)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 2443 3677777766666665321 1 111 1111 111
Q ss_pred -------ccCCCcEEEEeCCCCC--CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~r--k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|... .+ ..+. .+.+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 81 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 152 (260)
T 2zat_A 81 LVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR--GGGSVLIVSSV 152 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEech
Confidence 2237899999988642 11 1121 234555544 345555556553 46778887743
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.02 Score=53.47 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... . .++. +..| +.+
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~v~~ 88 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVV----ASRNLEEASEAAQKLTEKY-G--VETMAFRCDVSNYEEVKK 88 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CeEEEEEcCCCCHHHHHH
Confidence 45899999999999999999999874 2443 3677777776666662211 1 0111 1111 221
Q ss_pred -------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 89 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 159 (267)
T 1vl8_A 89 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIGSL 159 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECCc
Confidence 2337899999988753211 121 233455544 344445555542 45777777643
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.017 Score=53.13 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .++ +.+.++....++.... .++.. ..| +.+
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 73 (261)
T 1gee_A 7 GKVVVITGSSTGLGKSMAIRFATEKA-----KVVV----NYRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVI 73 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EcCCChHHHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 35899999999999999999999874 2443 255 5566665555554321 11211 111 121
Q ss_pred -cc-------CCCcEEEEeCCCCCCC---CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -LF-------EDAEWALLIGAKPRGP---GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -al-------~dADiViitag~~rk~---g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+ .+.|+||..+|..... ..+. .+.+..|.. +.+.+.+.+.+. .+.+.||+++-
T Consensus 74 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS 145 (261)
T 1gee_A 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSS 145 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-CCCCEEEEeCC
Confidence 12 3789999998865321 1121 233455533 344555555553 22678888775
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.016 Score=54.32 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. . ++... .| +.
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 92 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGA-----RILI----NGTDPSRVAQTVQEFRNVG-H---DAEAVAFDVTSESEIIE 92 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTT-C---CEEECCCCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEEcCCCCHHHHHH
Confidence 46889999999999999999999875 2443 4778888887777776432 1 11111 11 11
Q ss_pred ------cccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPR-GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~r-k~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+ ..+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 93 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iV~isS~ 163 (271)
T 4ibo_A 93 AFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR--GYGKIVNIGSL 163 (271)
T ss_dssp HHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 12237899999988653 22 11222 2355553 3455666666664 45788887753
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.025 Score=52.43 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 73 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGT-----AIAL----LDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIG 73 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 35899999999999999999999874 2443 3677777776666665321 11211 111 222
Q ss_pred -------ccCCCcEEEEeCCCC-C-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKP-R-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~-r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|.. . .+ ..+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 144 (262)
T 1zem_A 74 TVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTAS 144 (262)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 234789999998864 2 12 1121 223444543 455555556553 4678888774
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0041 Score=57.48 Aligned_cols=122 Identities=12% Similarity=0.163 Sum_probs=69.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc------
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------ 167 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------ 167 (398)
.+.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++..+.++......+..+++-..+..
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGA-----KVVI----VDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAA 77 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence 3456899999999999999999999874 2443 377878777666655321100000110000011
Q ss_pred -cccCCCcEEEEeCCCCCCCC----Cchh---hhHHHHH----HHHHHHHHHHHHhc--CCCeEEEEECCC
Q 015897 168 -ELFEDAEWALLIGAKPRGPG----MERA---GLLDING----QIFAEQGKALNAVA--SRNVKVIVVGNP 224 (398)
Q Consensus 168 -eal~dADiViitag~~rk~g----~~r~---dll~~N~----~i~~~i~~~i~~~a--~p~a~vIvvtNP 224 (398)
+.+...|++|..+|....++ .+.. ..+..|. .+.+.+.+.+.+.. ...+.||+++-.
T Consensus 78 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~ 148 (261)
T 3n74_A 78 LSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST 148 (261)
T ss_dssp HHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred HHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence 22236799999988653222 1221 2344443 34556666665531 125677777754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.023 Score=53.04 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc------------hhhHHHHHHHHhhhcCCCcceEE-E
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS------------LQALEGVAMELEDSLFPLLREVK-I 162 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~------------~~~l~g~a~DL~d~~~~~~~~v~-i 162 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . |++ .+.++....++.... . ++. +
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 76 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGA-----DIIL--F--DICHDIETNEYPLATSRDLEEAGLEVEKTG-R---KAYTA 76 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-S---CEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----eEEE--E--cccccccccccchhhhHHHHHHHHHHHhcC-C---ceEEE
Confidence 46899999999999999999999875 2443 3 443 455555555554322 1 111 1
Q ss_pred ecC--ccc-----------ccCCCcEEEEeCCCCCCC-CCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 163 GIN--PYE-----------LFEDAEWALLIGAKPRGP-GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 163 ~~~--~~e-----------al~dADiViitag~~rk~-g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
..| +.+ .+...|++|..+|..... ..+ -...+..|..-...+.+.+..+-..++.||+++--
T Consensus 77 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 155 (287)
T 3pxx_A 77 EVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV 155 (287)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence 111 222 223789999998865321 122 22456777666666666665543356788888753
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=54.60 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-HHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+. ++....++.... + .++.. ..| +.+
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~ 71 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGA-----DIVL----NGFGDAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVR 71 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----ECCSCHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCC-----EEEE----EeCCcchHHHHHHHHHHhcc-C--CcEEEEECCCCCHHHHH
Confidence 35799999999999999999999874 2443 2566555 665555554320 0 01111 111 121
Q ss_pred --------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 143 (260)
T 1x1t_A 72 GLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASA 143 (260)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECcH
Confidence 22378999999986532 1 1121 234555544 556666666664 45788888754
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0056 Score=58.65 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh------HHHHHHHHhhhcCCCcceEEEecCc----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA------LEGVAMELEDSLFPLLREVKIGINP---- 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~------l~g~a~DL~d~~~~~~~~v~i~~~~---- 166 (398)
+||.|+||+|++|++++..|+..|. .|.+ + +++... ......++.+.......-+..-..+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~ 73 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGY-----LPVV--I--DNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGAL 73 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-----CEEE--E--ECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--ecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHH
Confidence 5899999999999999999998774 2433 2 221110 0111122222110000001110112
Q ss_pred ccccC--CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ~eal~--dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.++++ +.|+||.+++..... ..+..+.+..|+.-...+.+.+.+. + -..+|.+|
T Consensus 74 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 131 (348)
T 1ek6_A 74 QRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-G-VKNLVFSS 131 (348)
T ss_dssp HHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEEE
T ss_pred HHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-C-CCEEEEEC
Confidence 23445 799999998754211 0123456788888888888888774 2 34566555
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.033 Score=52.26 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc--------------cchhhHHHHHHHHhhhcCCCcceEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--------------RSLQALEGVAMELEDSLFPLLREVK 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D--------------~~~~~l~g~a~DL~d~~~~~~~~v~ 161 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .|.+ .+.+.++..+.++.... .++.
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 79 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGA-----DIIA--VDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN----RRIV 79 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT----CCEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE--EeccccccccccccccccCCHHHHHHHHHHHhhcC----CceE
Confidence 46899999999999999999999875 2433 3221 12566665555554322 1121
Q ss_pred E-ecC--ccc-----------ccCCCcEEEEeCCCCCCCC----Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCe
Q 015897 162 I-GIN--PYE-----------LFEDAEWALLIGAKPRGPG----MERA---GLLDING----QIFAEQGKALNAVASRNV 216 (398)
Q Consensus 162 i-~~~--~~e-----------al~dADiViitag~~rk~g----~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a 216 (398)
. ..| +++ .+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ...+
T Consensus 80 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g 158 (286)
T 3uve_A 80 TAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAG-GRGG 158 (286)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCE
T ss_pred EEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCc
Confidence 1 111 222 2347899999998753221 1222 2345553 3555666666664 4568
Q ss_pred EEEEECCC
Q 015897 217 KVIVVGNP 224 (398)
Q Consensus 217 ~vIvvtNP 224 (398)
.||+++--
T Consensus 159 ~iv~isS~ 166 (286)
T 3uve_A 159 SIILTSSV 166 (286)
T ss_dssp EEEEECCG
T ss_pred EEEEECch
Confidence 88888754
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.002 Score=60.37 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--c---Cccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~eal 170 (398)
|||.|+||+|++|++++..|... +. .|.. ++++.+++. ++... ...+... + ...+++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~-----~V~~----~~R~~~~~~----~~~~~----~v~~~~~D~~d~~~l~~~~ 63 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID-----HFHI----GVRNVEKVP----DDWRG----KVSVRQLDYFNQESMVEAF 63 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT-----TEEE----EESSGGGSC----GGGBT----TBEEEECCTTCHHHHHHHT
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC-----cEEE----EECCHHHHH----HhhhC----CCEEEEcCCCCHHHHHHHH
Confidence 57999999999999999998875 43 2443 244444322 11111 0111111 1 124578
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+++|+||.+++.... ...|....+.+.+.+.+. +. ..+|.+|
T Consensus 64 ~~~d~vi~~a~~~~~--------~~~~~~~~~~l~~aa~~~-gv-~~iv~~S 105 (289)
T 3e48_A 64 KGMDTVVFIPSIIHP--------SFKRIPEVENLVYAAKQS-GV-AHIIFIG 105 (289)
T ss_dssp TTCSEEEECCCCCCS--------HHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred hCCCEEEEeCCCCcc--------chhhHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 999999999875321 133666777888888774 32 3455444
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0053 Score=57.00 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc----ccc-
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----ELF- 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----eal- 170 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.+.. .-+..-..+. +.+
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~d~~~v~~~~~ 78 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGA-----TVAI----ADLDVMAAQAVVAGLENGG----FAVEVDVTKRASVDAAMQ 78 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCTTCC----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhcCC----eEEEEeCCCHHHHHHHHH
Confidence 36899999999999999999999875 2443 3677666665554443211 0011000112 222
Q ss_pred ------CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 ------EDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ------~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. +..+.||+++-
T Consensus 79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 146 (263)
T 3ak4_A 79 KAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLAS-NTKGVIVNTAS 146 (263)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEEecc
Confidence 278999999886532 1 1121 233555543 444455555553 22577777764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0042 Score=58.53 Aligned_cols=110 Identities=18% Similarity=0.088 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||.|+||+|++|++++..|+..|. .|.. + +++.....+....+.+.. .. ..+. -...++.++|+
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~~-~~~~---~~~~Dl~~~d~ 72 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGE-----EVTV--L--DDLRVPPMIPPEGTGKFL-EK-PVLE---LEERDLSDVRL 72 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----CEEE--E--CCCSSCCSSCCTTSSEEE-CS-CGGG---CCHHHHTTEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--ecCCcccccchhhhhhhc-cC-CCee---EEeCccccCCE
Confidence 57999999999999999999999874 2433 2 343221000000111100 00 0111 12234448999
Q ss_pred EEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+++..... ..+..+... |+.-...+.+.+.+. + -..+|.+|
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~-v~~~v~~S 118 (321)
T 3vps_A 73 VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-G-VPKVVVGS 118 (321)
T ss_dssp EEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred EEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-C-CCeEEEec
Confidence 99998754310 112234455 998899999998886 3 23555555
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=57.47 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC---CC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (398)
++|.|+||+|.+|.+++..|+.. . |.+ .+++.+.++....++.. . ....++.-..+..+.++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~----~---V~~----~~r~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH----D---LLL----SGRRAGALAELAREVGA-R-ALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS----E---EEE----ECSCHHHHHHHHHHHTC-E-ECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC----C---EEE----EECCHHHHHHHHHhccC-c-EEEeeCCCHHHHHHHHHhcCCC
Confidence 47899999999999999998875 1 443 36776666655544431 1 00011100001122333 79
Q ss_pred cEEEEeCCCCCCC------CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 174 EWALLIGAKPRGP------GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 174 DiViitag~~rk~------g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|+||.++|..... ..+-...+..|..-...+.+.+.+ ...+.+|+++-.
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~sS~ 122 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF--QKGARAVFFGAY 122 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE--EEEEEEEEECCC
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh--cCCcEEEEEcCh
Confidence 9999998865321 112334567777777777776643 245778888754
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0044 Score=60.87 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---- 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---- 171 (398)
++||+||| .|.+|.+++..|...|. .|.+ + |++++.++. +.++ .. ....+..++++
T Consensus 8 ~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~--~--dr~~~~~~~-a~~~-----G~----~~~~~~~e~~~~a~~ 67 (341)
T 3ktd_A 8 SRPVCILG-LGLIGGSLLRDLHAANH-----SVFG--Y--NRSRSGAKS-AVDE-----GF----DVSADLEATLQRAAA 67 (341)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSCHHHHHH-HHHT-----TC----CEESCHHHHHHHHHH
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHH-HHHc-----CC----eeeCCHHHHHHhccc
Confidence 46999999 59999999999998873 3543 3 677666552 3221 11 12344455554
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||+||++.. ...+.++.+.+..+ .|+++|+.++.
T Consensus 68 ~aDlVilavP----------------~~~~~~vl~~l~~~-~~~~iv~Dv~S 102 (341)
T 3ktd_A 68 EDALIVLAVP----------------MTAIDSLLDAVHTH-APNNGFTDVVS 102 (341)
T ss_dssp TTCEEEECSC----------------HHHHHHHHHHHHHH-CTTCCEEECCS
T ss_pred CCCEEEEeCC----------------HHHHHHHHHHHHcc-CCCCEEEEcCC
Confidence 5799999853 23444555566665 68888777664
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0064 Score=55.36 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Ccccc---c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---F 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~ea---l 170 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ....++. ...+. +
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~-~~~D~~~~~~~~~~~~~~ 74 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGA-----KVVA----VTRTNSDLVSLAKECPGIE--P-VCVDLGDWDATEKALGGI 74 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE--E-EECCTTCHHHHHHHHTTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhccCCC--c-EEecCCCHHHHHHHHHHc
Confidence 46899999999999999999999874 2443 3666666554443321100 0 0001110 01122 3
Q ss_pred CCCcEEEEeCCCCCC-C--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 171 EDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 171 ~dADiViitag~~rk-~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
...|+||.++|.... + ..+. ...+..|..- .+.+.+.+.+. ...+.||+++-.
T Consensus 75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 137 (244)
T 1cyd_A 75 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSSM 137 (244)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEEcch
Confidence 357999999886432 1 1111 2345555444 44444555543 225778887753
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0042 Score=58.25 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .-+..-..+.
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~d~~~v~~~~~ 93 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGA-----IVGL----HGTREDKLKEIAADLGKDV----FVFSANLSDRKSIKQLAE 93 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCSSE----EEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce----EEEEeecCCHHHHHHHHH
Confidence 46899999999999999999999885 2443 3677777776655542111 0010000112
Q ss_pred ---cccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ---ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ---eal~dADiViitag~~rk-~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--
T Consensus 94 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~Iv~isS~ 161 (266)
T 3grp_A 94 VAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR--RYGRIINITSI 161 (266)
T ss_dssp HHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcEEEEECCH
Confidence 223478999999986532 1 1222 2335555443 66666677664 46788887754
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.005 Score=57.70 Aligned_cols=118 Identities=13% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-------ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~e 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .|++++.++..+.++......+..+++-..+ ..+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGA-----RVVL----ADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTID 81 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999875 2443 3677777776666552111000001100000 112
Q ss_pred ccCCCcEEEEeCCCCCC-CC----Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRG-PG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk-~g----~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... ++ .+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 82 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 147 (271)
T 3tzq_B 82 TFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA--GGGAIVNISSA 147 (271)
T ss_dssp HHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECCH
Confidence 23378999999886521 21 121 234555644 455555555663 57888888754
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.028 Score=52.60 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-------------chhhHHHHHHHHhhhcCCCcceEE-
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-------------SLQALEGVAMELEDSLFPLLREVK- 161 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-------------~~~~l~g~a~DL~d~~~~~~~~v~- 161 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . |+ +.+.++..+.++.+.. . ++.
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 81 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGA-----DIIA--C--DICAPVSASVTYAPASPEDLDETARLVEDQG-R---KALT 81 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-C---CEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eccccccccccccccCHHHHHHHHHHHHhcC-C---eEEE
Confidence 35789999999999999999999875 2433 2 33 5667776666665432 1 111
Q ss_pred EecC--cc-----------cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEE
Q 015897 162 IGIN--PY-----------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKV 218 (398)
Q Consensus 162 i~~~--~~-----------eal~dADiViitag~~rk-~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~v 218 (398)
+..| +. +.+...|++|..+|.... + ..+.. ..+..|+ .+.+...+.+.+. ...+.|
T Consensus 82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~i 160 (280)
T 3pgx_A 82 RVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEA-GNGGSI 160 (280)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEE
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEE
Confidence 1111 12 223478999999886532 1 11221 2344553 3556666666664 457888
Q ss_pred EEECCC
Q 015897 219 IVVGNP 224 (398)
Q Consensus 219 IvvtNP 224 (398)
|+++--
T Consensus 161 v~isS~ 166 (280)
T 3pgx_A 161 VVVSSS 166 (280)
T ss_dssp EEECCG
T ss_pred EEEcch
Confidence 888754
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0061 Score=55.90 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC--cc------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY------ 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~------ 167 (398)
++++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.... . .+..| +.
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~-~~~~D~~~~~~v~~~ 67 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-----QVSM----MGRRYQRLQQQELLLGNAV-----I-GIVADLAHHEDVDVA 67 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGE-----E-EEECCTTSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCCc-----e-EEECCCCCHHHHHHH
Confidence 45899999999999999999999875 2443 3777787776666653211 0 01111 11
Q ss_pred -----cccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 -----ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 -----eal~dADiViitag~~r-k~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|... .+ ..+. ...+..|..- .+.+.+.+.+ .++.||+++-
T Consensus 68 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~~~~iv~isS 135 (235)
T 3l6e_A 68 FAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGE---RGGVLANVLS 135 (235)
T ss_dssp HHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCEEEEEECC
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH---cCCEEEEEeC
Confidence 22336799999988742 11 1222 2345556544 3444445544 2357777764
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.021 Score=52.80 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh--HHHHHHHHhhhcCCCcceEE-EecC--ccc---
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVK-IGIN--PYE--- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~--l~g~a~DL~d~~~~~~~~v~-i~~~--~~e--- 168 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+. ++....++.... .++. +..| +.+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 69 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF-----DIAV----ADLPQQEEQAAETIKLIEAAD----QKAVFVGLDVTDKANFD 69 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-----EEEE----EECGGGHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCcchHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHH
Confidence 4789999999999999999999874 2443 2555555 665555654321 1111 1111 222
Q ss_pred --------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..++.||+++--
T Consensus 70 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 142 (258)
T 3a28_C 70 SAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDEL-GVKGKIINAASI 142 (258)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCCEEEEECCG
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCcEEEEECcc
Confidence 12378999999886532 1 1121 233555543 455566666654 233777877754
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0048 Score=58.06 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=69.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------PY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~~ 167 (398)
+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++......+ ...++. + -.
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~--~~Dv~d~~~v~~~~~~~~ 97 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGY-----GVAL----AGRRLDALQETAAEIGDDALCV--PTDVTDPDSVRALFTATV 97 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTSCCEEE--ECCTTSHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCeEEE--EecCCCHHHHHHHHHHHH
Confidence 4678889999999999999999875 2443 3677777776666653211000 011110 0 11
Q ss_pred cccCCCcEEEEeCCCCCC--CC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ELFEDAEWALLIGAKPRG--PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 eal~dADiViitag~~rk--~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+...+.+.||+++--.
T Consensus 98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 166 (272)
T 4dyv_A 98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSIS 166 (272)
T ss_dssp HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSS
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchh
Confidence 223479999999987432 21 122 234555543 46666667766411268888887543
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=59.47 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.. ++. +..| +.
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~ 69 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGA-----KVAF----SDINEAAGQQLAAELGE-------RSMFVRHDVSSEADWTL 69 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCT-------TEEEECCCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCC-------ceEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 2443 36777776655555421 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+. ...+..|.. ..+.+.+.+.+. . +.||+++--
T Consensus 70 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~-g~iv~isS~ 139 (253)
T 1hxh_A 70 VMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--G-GSIINMASV 139 (253)
T ss_dssp HHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--C-EEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc--C-CEEEEEcch
Confidence 123356999999886532 1 1222 234556643 556666666653 3 788888754
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.025 Score=51.90 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ .+ ..+.+.++....++.+.. . ++. +..| +.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~--~~-~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~d~~~v~~ 71 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGY-----NVAV--NY-AGSKEKAEAVVEEIKAKG-V---DSFAIQANVADADEVKA 71 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--EE-SSCHHHHHHHHHHHHHTT-S---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--Ee-CCCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHH
Confidence 35789999999999999999999875 2443 21 234566666666665432 1 111 1111 22
Q ss_pred ------cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS 141 (246)
T 3osu_A 72 MIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ--RSGAIINLSS 141 (246)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 122378999999886532 1 12222 24555543 455555555664 4677887774
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.023 Score=51.59 Aligned_cols=119 Identities=12% Similarity=0.100 Sum_probs=68.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCC--ceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQ--PIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~--~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
++|.|+||+|.+|.+++..|+..|....+. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~ 74 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL----SSRTAADLEKISLECRAEG----ALTDTITADISDMADVR 74 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE----EESCHHHHHHHHHHHHTTT----CEEEEEECCTTSHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEE----EeCCHHHHHHHHHHHHccC----CeeeEEEecCCCHHHHH
Confidence 479999999999999999999887421100 1332 3667777776666654321 12221 111 221
Q ss_pred --------ccCCCcEEEEeCCCCCCCC---Cc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 --------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 --------al~dADiViitag~~rk~g---~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+...|+||.++|...... .+ -...+..|.. +++.+.+.+.+. ..+.||+++-..
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~~ 147 (244)
T 2bd0_A 75 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVA 147 (244)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEEecch
Confidence 1237999999998653211 11 1233455543 445555555553 467888887543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.018 Score=54.13 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cccc--
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYEL-- 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~ea-- 169 (398)
+.+++.|+||+|.||.+++..|+..|. .|.+ .+++++.++..+.++.... . ++. +..| +.+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~~~ 98 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-----HVIL----HGVKPGSTAAVQQRIIASG-G---TAQELAGDLSEAGAGT 98 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSTTTTHHHHHHHHHTT-C---CEEEEECCTTSTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC-C---eEEEEEecCCCHHHHH
Confidence 346899999999999999999999875 2443 3667777776777765432 1 111 1111 1111
Q ss_pred --c------CCCcEEEEeCCCCCCCC---Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 --F------EDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 --l------~dADiViitag~~rk~g---~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+ ...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 169 (275)
T 4imr_A 99 DLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR--KWGRVVSIGSI 169 (275)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECCH
Confidence 1 36899999988653211 1222 2345553 3556666666664 56888888753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.013 Score=54.12 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ . +++.+ +....++.... .++.. ..| +. +
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~--~--~r~~~--~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~ 68 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGA-----NIVL--N--GFGDP--APALAEIARHG----VKAVHHPADLSDVAQIEA 68 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--E--CSSCC--HHHHHHHHTTS----CCEEEECCCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCch--HHHHHHHHhcC----CceEEEeCCCCCHHHHHH
Confidence 35899999999999999999999874 2443 3 44433 22334443211 11111 111 12 2
Q ss_pred ccC-------CCcEEEEeCCCCCC-C--CCc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFE-------DAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~-------dADiViitag~~rk-~--g~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.++ +.|++|..+|.... + ..+ -...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 69 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 139 (255)
T 2q2v_A 69 LFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR--NWGRIINIASV 139 (255)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcCc
Confidence 222 79999999886532 1 111 1234666665 667777777763 45788888754
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.029 Score=52.84 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=68.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEEEe-cC--cc-----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (398)
+++.|+||+|.||.+++..|+..|. .|.+ .++ +.+.++..+.++.... . ..+... .| +.
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~d~~~v~~ 93 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGA-----NIVL----NGFGAPDEIRTVTDEVAGLS-S--GTVLHHPADMTKPSEIAD 93 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----ECCCCHHHHHHHHHHHHTTC-S--SCEEEECCCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCChHHHHHHHHHHhhcc-C--CcEEEEeCCCCCHHHHHH
Confidence 5789999999999999999999875 2443 255 4566666666665321 1 122211 11 11
Q ss_pred ------cccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 94 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 164 (281)
T 3v2h_A 94 MMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK--GWGRIINIASA 164 (281)
T ss_dssp HHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCc
Confidence 22347899999998753221 1222 23555543 455556666664 46778887753
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.035 Score=51.25 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... +...++. +..| ++
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGY-----RVVL----IARSKQNLEKVHDEIMRSN-KHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTC-----EEEE----EESCHHHHHHHHHHHHHHC-TTSCCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-cccCcceEEeccCCCHHHHHH
Confidence 45899999999999999999999875 2443 3778888887777775432 1101111 1111 21
Q ss_pred ------cccCCCcEEEEeCCCCCC-C-CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P-GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~-g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|++|..+|.... + ..+.. ..+..|. .+.+.+.+.+.+. ..+.||+++-..
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 147 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRA 147 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEEccHH
Confidence 223468999999886432 1 12221 2344453 3455666666663 567888887543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.025 Score=53.02 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... . ++. +..| +.
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~~~~~v~~ 88 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGL-----RVFV----CARGEEGLRTTLKELREAG-V---EADGRTCDVRSVPEIEA 88 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---ceEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 2443 3677777776666665321 1 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHH------HHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKA------LNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~------i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+. ...+..|..-...+.+. +.+. ..+.||+++--
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~--~~g~iv~isS~ 161 (277)
T 2rhc_B 89 LVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER--GTGRIVNIAST 161 (277)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHH--TEEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhc--CCeEEEEECcc
Confidence 12347899999998653211 111 23455665544444444 4332 35788888754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.017 Score=53.78 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (398)
++++|.|+||+|.+|.+++..|+..|. .+.+ . .+++.+.++....++.+.. .++.. ..| +.
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~-----~V~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~ 92 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGW-----RVGV--N-YAANREAADAVVAAITESG----GEAVAIPGDVGNAADIA 92 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E-ESSCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E-cCCChhHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 346799999999999999999999875 2433 1 2566667776666665432 12221 111 12
Q ss_pred -------cccCCCcEEEEeCCCCCCCC----Cch---hhhHHHHHH----HHHHHHHHHHHhc-CCCeEEEEECCC
Q 015897 168 -------ELFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVA-SRNVKVIVVGNP 224 (398)
Q Consensus 168 -------eal~dADiViitag~~rk~g----~~r---~dll~~N~~----i~~~i~~~i~~~a-~p~a~vIvvtNP 224 (398)
+.+...|++|..+|....++ .+. ...+..|.. +.+...+.+.+.. ...+.||+++-.
T Consensus 93 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~ 168 (272)
T 4e3z_A 93 AMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM 168 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence 12236799999988754222 121 233555533 4445555554421 246778887753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.013 Score=54.45 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||.|+|| |++|++++..|+..|. .|.. ++++.+.+.... ... . .-+..-..+.+ ++++|+
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~----~~~--~-~~~~~D~~d~~-~~~~d~ 66 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW-----RIIG----TSRNPDQMEAIR----ASG--A-EPLLWPGEEPS-LDGVTH 66 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC-----EEEE----EESCGGGHHHHH----HTT--E-EEEESSSSCCC-CTTCCE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EEcChhhhhhHh----hCC--C-eEEEecccccc-cCCCCE
Confidence 469999997 9999999999998864 2432 255555543221 111 0 00111011233 899999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||.+++..
T Consensus 67 vi~~a~~~ 74 (286)
T 3ius_A 67 LLISTAPD 74 (286)
T ss_dssp EEECCCCB
T ss_pred EEECCCcc
Confidence 99998754
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0041 Score=56.64 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH-HHHHHhhhcCCCcceEEEecCccccc-CCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGINPYELF-EDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g-~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (398)
|++|.|+||+|++|.+++..|+..|. .|.+ + +++.+.++. ...|+.+.. ... .-.+.+ .+.
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~D~~~~~-~~~-------~~~~~~~~~~ 63 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGH-----TVIG--I--DRGQADIEADLSTPGGRET-AVA-------AVLDRCGGVL 63 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSSSSEECCTTSHHHHHH-HHH-------HHHHHHTTCC
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCC-----EEEE--E--eCChhHccccccCCcccHH-HHH-------HHHHHcCCCc
Confidence 45899999999999999999998774 2433 2 444332110 112322211 000 000111 479
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhc--CCCeEEEEECC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGN 223 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a--~p~a~vIvvtN 223 (398)
|+||.++|.... ...-...+..|..-...+.+.+.+.. ...+.+|+++-
T Consensus 64 d~vi~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS 114 (255)
T 2dkn_A 64 DGLVCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114 (255)
T ss_dssp SEEEECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred cEEEECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence 999999886531 12234456666554444444333321 23467777764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00088 Score=64.81 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCc----cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----YELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~----~eal 170 (398)
.++|.|+||+|++|++++..|+..|. .|.+ + +++.+........+.. . .. ..+... ..+ .+++
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~-~-~~-~~~~~~Dl~d~~~~~~~~ 76 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKG--Y--SLTAPTVPSLFETARV-A-DG-MQSEIGDIRDQNKLLESI 76 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCSSSSCHHHHTTT-T-TT-SEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----eEEE--E--eCCCcccchhhHhhcc-C-Cc-eEEEEccccCHHHHHHHH
Confidence 46999999999999999999998764 2433 2 3443322212222210 0 00 011111 112 2344
Q ss_pred CC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 ED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++ .|+||.+++.+... ..+..+.+..|+.-...+.+.+.+. +....+|.+|-
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 132 (357)
T 1rkx_A 77 REFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNITS 132 (357)
T ss_dssp HHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEECC
T ss_pred HhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEecC
Confidence 44 79999998864211 1123456778888888888888775 33456776664
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=56.24 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... + .++. +..| +.
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~d~~~v~~ 108 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGA-----NVAV----AARSPRELSSVTAELGELG-A--GNVIGVRLDVSDPGSCAD 108 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHTTSS-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhC-C--CcEEEEEEeCCCHHHHHH
Confidence 46899999999999999999999875 2444 3677777877777776432 1 1121 1111 22
Q ss_pred ------cccCCCcEEEEeCCCCC-CC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~r-k~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+ ..+.. ..+..|+. +.+...+.+.+. ..+.||+++--
T Consensus 109 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iV~isS~ 179 (293)
T 3rih_A 109 AARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS--GRGRVILTSSI 179 (293)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--SSCEEEEECCS
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEeCh
Confidence 22346799999988642 22 12222 23555543 445555555664 35677776643
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0077 Score=54.86 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc----c---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----E--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----e--- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.... -+..-..+. +
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~D~~~~~~~~~~~~ 72 (244)
T 3d3w_A 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVA----VSRTQADLDSLVRECPGIE-----PVCVDLGDWEATERALG 72 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-----EEECCTTCHHHHHHHHT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCCCC-----EEEEeCCCHHHHHHHHH
Confidence 46899999999999999999999874 2443 3566666654443332110 010000111 1
Q ss_pred ccCCCcEEEEeCCCCCCCC---Cc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 al~dADiViitag~~rk~g---~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+...|+||..+|...... .+ -...+..|..- .+...+.+.+. ...+.||+++-..
T Consensus 73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~ 138 (244)
T 3d3w_A 73 SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQC 138 (244)
T ss_dssp TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCGG
T ss_pred HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEeCchh
Confidence 2235899999988653211 11 12345556544 44444555443 2257888887543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.004 Score=59.37 Aligned_cols=114 Identities=11% Similarity=-0.064 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhH-HHHHHHHhhhcCCCcceEEE-ecC--c----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKI-GIN--P---- 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l-~g~a~DL~d~~~~~~~~v~i-~~~--~---- 166 (398)
.++||.|+||+|++|++++..|+..|. .|.. + +++.+.. .....++.. ...+.+ ..| +
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~ 78 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY-----RVHG--L--VARRSSDTRWRLRELGI-----EGDIQYEDGDMADACSV 78 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCCSSCCCHHHHHTTC-----GGGEEEEECCTTCHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC-----eEEE--E--eCCCccccccchhhccc-----cCceEEEECCCCCHHHH
Confidence 357999999999999999999998763 2432 2 3332211 011112210 011211 111 2
Q ss_pred ccccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+++++ .|+||.+++..... ..+..+.+..|+.-...+.+.+.+. +....+|.+|-
T Consensus 79 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 138 (335)
T 1rpn_A 79 QRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAST 138 (335)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEE
T ss_pred HHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 234454 59999998864311 1234566788888888888888875 33356666653
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0074 Score=55.82 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=66.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++......+..+++-. ..-.+.
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIA----TGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3688999999999999999999874 2443 36777777665555431110000010000 011122
Q ss_pred cCCCcEEEEeCCCCC--CCC--Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 FEDAEWALLIGAKPR--GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 l~dADiViitag~~r--k~g--~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+...|++|..+|... .+- .+. ...+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 135 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEccc
Confidence 347899999998652 221 122 23455553 3455666666553 45778887754
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=54.59 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++++.++..+.++.........-+..-..+.
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGY-----SVVI----TGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 45889999999999999999999875 2443 367777777777776543211100011000122
Q ss_pred ---cccCCCcEEEEeCCCCCCCC----Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ---ELFEDAEWALLIGAKPRGPG----MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ---eal~dADiViitag~~rk~g----~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+..-|++|..+|.....+ .+.. ..+..|+. +.+.+.+.+.+.....+.||+++--
T Consensus 104 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 174 (281)
T 4dry_A 104 AVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSI 174 (281)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 22346799999998643211 1222 24555533 4666666776641136888888753
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0038 Score=58.02 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++......+ ...+ .+.
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~--~~Dv--~~~~~v~~~~~ 74 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGA-----EVLL----TGRNESNIARIREEFGPRVHAL--RSDI--ADLNEIAVLGA 74 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGEEEE--ECCT--TCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCcceEE--EccC--CCHHHHHHHHH
Confidence 35899999999999999999999875 2443 3677777776665553211000 0011 122
Q ss_pred ---cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ---ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 ---eal~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-..++.||+++--.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 141 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA 141 (255)
T ss_dssp HHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence 23347899999988753211 122 23466676655566666655422467888887543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0048 Score=59.25 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=41.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||++|| .|.+|..++..|+..|. ++.. | |++.++++ +|.+. ......+..++++++|+||
T Consensus 7 kIgfIG-LG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~----~l~~~------G~~~~~s~~e~~~~~dvvi 66 (297)
T 4gbj_A 7 KIAFLG-LGNLGTPIAEILLEAGY-----ELVV--W--NRTASKAE----PLTKL------GATVVENAIDAITPGGIVF 66 (297)
T ss_dssp EEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--C---------C----TTTTT------TCEECSSGGGGCCTTCEEE
T ss_pred cEEEEe-cHHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHH----HHHHc------CCeEeCCHHHHHhcCCcee
Confidence 899999 69999999999999885 3443 4 66665543 22221 2334567889999999999
Q ss_pred EeC
Q 015897 178 LIG 180 (398)
Q Consensus 178 ita 180 (398)
++-
T Consensus 67 ~~l 69 (297)
T 4gbj_A 67 SVL 69 (297)
T ss_dssp ECC
T ss_pred eec
Confidence 874
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0042 Score=58.10 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++..+.++.. ++. +..| +.+
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~ 69 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGA-----SLVA----VDREERLLAEAVAALEA-------EAIAVVADVSDPKAVEA 69 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCCS-------SEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcC-------ceEEEEcCCCCHHHHHH
Confidence 35899999999999999999999874 2443 36777777655544421 111 1111 121
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+...|++|..+|.... + ..+. ...+..|..-...+.+.+..+....+.||+++--.
T Consensus 70 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 139 (263)
T 2a4k_A 70 VFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA 139 (263)
T ss_dssp HHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 22356999999886532 1 1122 23466676655555555554421257788887654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.088 Score=45.86 Aligned_cols=134 Identities=12% Similarity=0.016 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cC---cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~---~~ea 169 (398)
.++|.|+|+ |.+|..++..|... |. ++.+ +|.++++++... + .. ..+... ++ ..++
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~-----~V~v----id~~~~~~~~~~-~---~g----~~~~~gd~~~~~~l~~~ 100 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGK-----ISLG----IEIREEAAQQHR-S---EG----RNVISGDATDPDFWERI 100 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCS-----CEEE----EESCHHHHHHHH-H---TT----CCEEECCTTCHHHHHTB
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCC-----eEEE----EECCHHHHHHHH-H---CC----CCEEEcCCCCHHHHHhc
Confidence 358999995 99999999999887 64 3543 377776655322 1 11 111111 11 1233
Q ss_pred --cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEec
Q 015897 170 --FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247 (398)
Q Consensus 170 --l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~g 247 (398)
+.++|+||++.+.. ..|. .+...+++. +|+..++..+|-.+. ...+.+ . +.+ .++ ..
T Consensus 101 ~~~~~ad~vi~~~~~~-----------~~~~----~~~~~~~~~-~~~~~ii~~~~~~~~-~~~l~~-~-G~~-~vi-~p 159 (183)
T 3c85_A 101 LDTGHVKLVLLAMPHH-----------QGNQ----TALEQLQRR-NYKGQIAAIAEYPDQ-LEGLLE-S-GVD-AAF-NI 159 (183)
T ss_dssp CSCCCCCEEEECCSSH-----------HHHH----HHHHHHHHT-TCCSEEEEEESSHHH-HHHHHH-H-TCS-EEE-EH
T ss_pred cCCCCCCEEEEeCCCh-----------HHHH----HHHHHHHHH-CCCCEEEEEECCHHH-HHHHHH-c-CCC-EEE-ch
Confidence 78999999975421 2232 333455565 577777766654332 233333 3 342 333 32
Q ss_pred CchhHHHHHHHHHHHcCcCcC
Q 015897 248 TRLDENRAKCQLALKAGVFYD 268 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~ 268 (398)
...-..++...+.+.++.+..
T Consensus 160 ~~~~a~~l~~~~~~~~~~~~~ 180 (183)
T 3c85_A 160 YSEAGSGFARHVCKQLEPQFT 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCccc
Confidence 322234555555566665443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0069 Score=57.16 Aligned_cols=116 Identities=10% Similarity=0.008 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .|++.+.++..+.++.... .. ....++. ..
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-----HVLC----ADIDGDAADAAATKIGCGA-AA-CRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHCSSC-EE-EECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCCcc-eE-EEecCCCHHHHHHHHHHH
Confidence 35789999999999999999999875 2443 3677777776666552111 00 0011110 01
Q ss_pred ccccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 98 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 163 (277)
T 3gvc_A 98 VAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER--GGGAIVNLSSL 163 (277)
T ss_dssp HHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 1223478999999886521 1 1222 234555544 455666666653 57888888753
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.001 Score=65.22 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC-cCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC------c
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGE-VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------P 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~-~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~ 166 (398)
+++||.|+||+|++|++++..|+..| . .|.. + +++..... ..+.. ...+.+. .| .
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-----~V~~--~--~r~~~~~~---~~l~~-----~~~v~~~~~Dl~d~~~l 93 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-----QVHV--V--DNLLSAEK---INVPD-----HPAVRFSETSITDDALL 93 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS-----EEEE--E--CCCTTCCG---GGSCC-----CTTEEEECSCTTCHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc-----eEEE--E--ECCCCCch---hhccC-----CCceEEEECCCCCHHHH
Confidence 45799999999999999999999877 3 2433 2 44322210 01110 0112211 11 2
Q ss_pred ccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.++++++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ..-..+|.+|-
T Consensus 94 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~~V~~SS 151 (377)
T 2q1s_A 94 ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHF-KRLKKVVYSAA 151 (377)
T ss_dssp HHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTC-SSCCEEEEEEE
T ss_pred HHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCC
Confidence 35678999999998754211 0133456778888888888887763 12235665554
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=58.83 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC----------CcceEEEec
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGI 164 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~----------~~~~v~i~~ 164 (398)
.-.|..||| .|.+|..+|..|+..|. ++.. + |+++++++.....-....-+ ....+..++
T Consensus 10 ~~~~~~ViG-lGyvGlp~A~~La~~G~-----~V~~--~--D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt 79 (431)
T 3ojo_A 10 HGSKLTVVG-LGYIGLPTSIMFAKHGV-----DVLG--V--DINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST 79 (431)
T ss_dssp --CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred cCCccEEEe-eCHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC
Confidence 356999999 59999999999999875 3433 3 67777766443210000000 012455555
Q ss_pred CcccccCCCcEEEEeCCCCC
Q 015897 165 NPYELFEDAEWALLIGAKPR 184 (398)
Q Consensus 165 ~~~eal~dADiViitag~~r 184 (398)
+ +++||+||++.+.|.
T Consensus 80 d----~~~aDvvii~VpTp~ 95 (431)
T 3ojo_A 80 T----PEASDVFIIAVPTPN 95 (431)
T ss_dssp S----CCCCSEEEECCCCCB
T ss_pred c----hhhCCEEEEEeCCCc
Confidence 4 458999999877764
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.029 Score=52.87 Aligned_cols=114 Identities=17% Similarity=0.053 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++... .| +.
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 74 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGA-----KVVV----TARNGNALAELTDEIAGGG----GEAAALAGDVGDEALHEA 74 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHTTTT----CCEEECCCCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35788999999999999999999875 2443 4778888887777765422 112111 11 11
Q ss_pred ------cccCCCcEEEEeCCCCCCCC----Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG----MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g----~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.....+ .+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 146 (280)
T 3tox_A 75 LVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL--GGGSLTFTSSF 146 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCh
Confidence 22347899999988642211 1221 2344453 3455566666663 46788887754
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.025 Score=52.94 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=68.2
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY- 167 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~- 167 (398)
|+.+.+++.|+||+|.||.+++..|+..|. .+.+ . ..++.+.++..+.++.... . ++. +..| +.
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~-----~Vv~--~-~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~~~~ 90 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGF-----TVVI--N-YAGKAAAAEEVAGKIEAAG-G---KALTAQADVSDPA 90 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTC-----EEEE--E-ESSCSHHHHHHHHHHHHTT-C---CEEEEECCTTCHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHHhcC-C---eEEEEEcCCCCHH
Confidence 333446799999999999999999999875 2443 1 1345556666666655432 1 111 1111 12
Q ss_pred ----------cccCCCcEEEEeCCCCC-CCC--Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ----------ELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ----------eal~dADiViitag~~r-k~g--~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+- .+. ...+..|..-...+.+.+...-..++.||+++--
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 163 (267)
T 3u5t_A 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS 163 (267)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence 22347899999988653 221 111 2345567655555555444432245788888743
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0077 Score=59.55 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=55.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHh----hhcCC-CcceEEEecCc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELE----DSLFP-LLREVKIGINP 166 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~----d~~~~-~~~~v~i~~~~ 166 (398)
|.+++||+|+||+|.+|..+...|...+. +.|..+....+. +.+. +.- +...+ ...+..+..-+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~saGk~~~----~~~p~~~~~~~~~~~~~~~v~~~~ 73 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSVGKPYG----EVVRWQTVGQVPKEIADMEIKPTD 73 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTTTSBHH----HHCCCCSSSCCCHHHHTCBCEECC
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhcCCChh----HhcccccccccccccccceEEeCC
Confidence 34568999999999999999997766543 333333222221 1111 110 00000 00122232234
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+++.++|+||++.+.. .-++++..+.+ .+++||..|.+
T Consensus 74 ~~~~~~vDvvf~a~p~~----------------~s~~~a~~~~~---~G~~vIDlSa~ 112 (359)
T 4dpk_A 74 PKLMDDVDIIFSPLPQG----------------AAGPVEEQFAK---EGFPVISNSPD 112 (359)
T ss_dssp GGGCTTCCEEEECCCTT----------------THHHHHHHHHH---TTCEEEECSST
T ss_pred HHHhcCCCEEEECCChH----------------HHHHHHHHHHH---CCCEEEEcCCC
Confidence 56789999999986532 22344444433 36777777765
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0077 Score=59.55 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
|.+++||+|+||+|.+|..+...|...+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP 31 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHP 31 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCS
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999776654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.034 Score=51.45 Aligned_cols=116 Identities=12% Similarity=0.015 Sum_probs=69.5
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--ccc---
Q 015897 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G-~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (398)
.+++.|+||+| .+|.+++..|+..|. .|.+ .+++.+.++....++.+.. . .++... .| +.+
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~v~ 89 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGA-----DVVI----SDYHERRLGETRDQLADLG-L--GRVEAVVCDVTSTEAVD 89 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC-S--SCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHHhcC-C--CceEEEEeCCCCHHHHH
Confidence 46899999877 599999999999875 2443 3677777777777765432 1 122211 11 221
Q ss_pred --------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk~g---~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+..-|++|..+|...... .+. ...+..|. .+.+...+.+.+. ...+.||+++--
T Consensus 90 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 162 (266)
T 3o38_A 90 ALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGV-DHGGVIVNNASV 162 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SCCEEEEEECCG
T ss_pred HHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEeCCH
Confidence 2236799999988653211 122 22344453 3455555566653 356788887743
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.041 Score=51.36 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-------------chhhHHHHHHHHhhhcCCCcceEEE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-------------SLQALEGVAMELEDSLFPLLREVKI 162 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-------------~~~~l~g~a~DL~d~~~~~~~~v~i 162 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . |+ +.+.++..+.++.... . ++..
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 77 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGA-----DIIA--V--DIAGKLPSCVPYDPASPDDLSETVRLVEAAN-R---RIVA 77 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-C---CEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-----EEEE--E--eccccccccccccccCHHHHHHHHHHHHhcC-C---eEEE
Confidence 46899999999999999999999875 2443 2 33 5566666666555432 1 1111
Q ss_pred -ecC--cc-----------cccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEE
Q 015897 163 -GIN--PY-----------ELFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKV 218 (398)
Q Consensus 163 -~~~--~~-----------eal~dADiViitag~~rk~g---~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~v 218 (398)
..| ++ +.+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ...+.|
T Consensus 78 ~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~i 156 (277)
T 3tsc_A 78 AVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEG-GRGGSI 156 (277)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCCCEE
Confidence 111 22 22346899999988753221 1222 2345553 3566666667775 457888
Q ss_pred EEECCCc
Q 015897 219 IVVGNPC 225 (398)
Q Consensus 219 IvvtNP~ 225 (398)
|+++--.
T Consensus 157 v~isS~~ 163 (277)
T 3tsc_A 157 ILISSAA 163 (277)
T ss_dssp EEECCGG
T ss_pred EEEccHh
Confidence 8887543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.051 Score=50.86 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ .+ ..+.++++..+.++.... . ++. +..| +.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~--~~-~~~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 98 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGA-----AVAL--TY-VNAAERAQAVVSEIEQAG-G---RAVAIRADNRDAEAIEQ 98 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EE-SSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--Ee-CCCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 2443 21 234556666666665432 1 111 1111 21
Q ss_pred ------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+...-...+.||+++-.
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~ 167 (271)
T 3v2g_A 99 AIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN 167 (271)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence 12237899999988753221 121 2345666555445555554442346777777653
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=96.30 E-value=0.02 Score=51.96 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----L 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e----a 169 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ + .+++.+.++....+++... . ++.. ..| +.+ .
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~-----~v~~-~--~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~~ 69 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC-----KVLV-N--YARSAKAAEEVSKQIEAYG-G---QAITFGGDVSKEADVEAM 69 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE-E--ESSCHHHHHHHHHHHHHHT-C---EEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE-E--cCCCHHHHHHHHHHHHhcC-C---cEEEEeCCCCCHHHHHHH
Confidence 4789999999999999999999874 2433 1 2466666665555554321 1 1111 111 222 1
Q ss_pred -------cCCCcEEEEeCCCCCCCC---Cc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 -------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 -------l~dADiViitag~~rk~g---~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+.|+||..+|...... .+ -...+..|..- .+...+.+.+. ..+.||+++--
T Consensus 70 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 139 (244)
T 1edo_A 70 MKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASV 139 (244)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCh
Confidence 237899999988754211 11 12345555443 44445555543 46788888754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.042 Score=52.05 Aligned_cols=118 Identities=11% Similarity=0.037 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ .+.+.+.+.++....++++.. .++... .| +.
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 117 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGA-----DVAI--NYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARS 117 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--ECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--EeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2443 333333344554444444322 112211 11 11
Q ss_pred ------cccCCCcEEEEeCCCCCCCC----Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG----MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g----~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.....+ .+. ...+..|..-...+.+.+...-..++.||+++--
T Consensus 118 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~ 187 (294)
T 3r3s_A 118 LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI 187 (294)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence 22347899999988643211 122 2356777666666666665553346788888753
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.017 Score=53.74 Aligned_cols=115 Identities=16% Similarity=0.038 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY---- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~---- 167 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++.....+.... . ++. +..| +.
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~~~~~~~ 99 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-----DVAI----WYNSHPADEKAEHLQKTYG-V---HSKAYKCNISDPKSVE 99 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC-----EEEE----EESSSCCHHHHHHHHHHHC-S---CEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cceEEEeecCCHHHHH
Confidence 346899999999999999999998874 2443 2555555554444443221 1 111 1111 11
Q ss_pred cc-------cCCCcEEEEeCCCCCC--C---CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 EL-------FEDAEWALLIGAKPRG--P---GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ea-------l~dADiViitag~~rk--~---g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+. +...|+||..+|.... + ..+. ...+..|+.- .+.+.+.+.+. ..+.||+++--
T Consensus 100 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~isS~ 173 (279)
T 3ctm_A 100 ETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN--GKGSLIITSSI 173 (279)
T ss_dssp HHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCeEEEECch
Confidence 12 2348999999886532 1 1111 1234555443 56677777664 45677777643
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.026 Score=54.48 Aligned_cols=118 Identities=8% Similarity=0.007 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH-HHHHHHhhhcCCCcceEEEec-C--cc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGI-N--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~-g~a~DL~d~~~~~~~~v~i~~-~--~~---- 167 (398)
|++|.|+||+|++|++++..|+..|. .|.+ + +++.+... ....++..........+.+.. | +.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY-----EVHG--I--KRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--CC---------------------CCEEECCCCSSCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--ECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHH
Confidence 56899999999999999999998763 2433 2 44432210 011111110000001222211 1 12
Q ss_pred cccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCC--CeEEEEECC
Q 015897 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGN 223 (398)
Q Consensus 168 eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtN 223 (398)
+++++ .|+||.+++..... ..+....+..|+.-...+.+.+.+. .. ++.+|++|-
T Consensus 72 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS 132 (372)
T 1db3_A 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQAST 132 (372)
T ss_dssp HHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEE
T ss_pred HHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCC
Confidence 33443 69999998864321 1233455677888888888888775 33 256666663
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0058 Score=56.89 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc--CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~--~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dA 173 (398)
+||.|+||+|++|++++..|+.. +. .|.. .+++.+++.. +.+..... ..++.-.....++++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~----l~~~~~~~~~~D~~d~~~l~~~~~~~ 67 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-----QIIA----IVRNVEKAST----LADQGVEVRHGDYNQPESLQKAFAGV 67 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-----GEEE----EESCTTTTHH----HHHTTCEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-----eEEE----EEcCHHHHhH----HhhcCCeEEEeccCCHHHHHHHHhcC
Confidence 47999999999999999999886 53 3443 2455444332 11111000 00100001123568899
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+||.+++.. ++ . ..|..-...+.+.+.+. +. ..+|.+|
T Consensus 68 d~vi~~a~~~--~~--~----~~n~~~~~~l~~a~~~~-~~-~~~v~~S 106 (287)
T 2jl1_A 68 SKLLFISGPH--YD--N----TLLIVQHANVVKAARDA-GV-KHIAYTG 106 (287)
T ss_dssp SEEEECCCCC--SC--H----HHHHHHHHHHHHHHHHT-TC-SEEEEEE
T ss_pred CEEEEcCCCC--cC--c----hHHHHHHHHHHHHHHHc-CC-CEEEEEC
Confidence 9999988753 11 1 34777777788877774 22 3555554
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.053 Score=51.40 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc----------cchhhHHHHHHHHhhhcCCCcceEE-Eec
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE----------RSLQALEGVAMELEDSLFPLLREVK-IGI 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D----------~~~~~l~g~a~DL~d~~~~~~~~v~-i~~ 164 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .|.+ ++.+.++..+.++.... . ++. +..
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ 96 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGA-----DIIA--IDVCKQLDGVKLPMSTPDDLAETVRQVEALG-R---RIIASQV 96 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-C---CEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--EecccccccccccccCHHHHHHHHHHHHhcC-C---ceEEEEC
Confidence 35899999999999999999999875 2433 2222 12566666666665432 1 111 111
Q ss_pred C--cc-----------cccCCCcEEEEeCCCCCCC----CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEE
Q 015897 165 N--PY-----------ELFEDAEWALLIGAKPRGP----GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIV 220 (398)
Q Consensus 165 ~--~~-----------eal~dADiViitag~~rk~----g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIv 220 (398)
| +. +.+...|++|..+|..... ..+.. ..+..|+ .+.+.+.+.+.+. ...+.||+
T Consensus 97 Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~Iv~ 175 (299)
T 3t7c_A 97 DVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG-KRGGSIVF 175 (299)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEE
Confidence 1 11 2234789999998864321 12222 3355554 3555666666664 35688888
Q ss_pred ECCC
Q 015897 221 VGNP 224 (398)
Q Consensus 221 vtNP 224 (398)
++--
T Consensus 176 isS~ 179 (299)
T 3t7c_A 176 TSSI 179 (299)
T ss_dssp ECCG
T ss_pred ECCh
Confidence 8753
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=55.31 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... ++... .| +.
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~d~~~v~~ 94 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGA-----RVFI----CARDAEACADTATRLSAYG-----DCQAIPADLSSEAGARR 94 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHTTSS-----CEEECCCCTTSHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-----ceEEEEeeCCCHHHHHH
Confidence 45899999999999999999999874 2443 3677777776666664311 11111 11 11
Q ss_pred ------cccCCCcEEEEeCCCCCC-C--CCc---hhhhHHHHHH----HHHHHHHHHHHhcCC---CeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASR---NVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~--g~~---r~dll~~N~~----i~~~i~~~i~~~a~p---~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+ -...+..|.. +.+.+.+.+.+. .. .+.||+++--
T Consensus 95 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~~~~g~iV~isS~ 169 (276)
T 2b4q_A 95 LAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRS-ASAENPARVINIGSV 169 (276)
T ss_dssp HHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CCSSSCEEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-cCCCCCCEEEEECCH
Confidence 223478999999886532 1 111 1234555543 446666666654 22 1788888753
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=59.73 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--C
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (398)
..+||.|+||+|++|++++..|+..|. .|.. + +++. .|+.+.. ...++++ +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~-------~Dl~d~~-----------~~~~~~~~~~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNV-----EVIP--T--DVQD-------LDITNVL-----------AVNKFFNEKK 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSE-----EEEE--E--CTTT-------CCTTCHH-----------HHHHHHHHHC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCC-----eEEe--c--cCcc-------CCCCCHH-----------HHHHHHHhcC
Confidence 357999999999999999999998763 2432 2 3321 1222111 1123344 7
Q ss_pred CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 173 ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+|+||.+++..... ..+..+.+..|+.-...+.+.+.+. + +.+|.+|-
T Consensus 64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~--~~iv~~SS 113 (292)
T 1vl0_A 64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-G--AEIVQIST 113 (292)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEEE
T ss_pred CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEech
Confidence 89999998854211 1233456788888888888888875 3 36666653
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0066 Score=57.38 Aligned_cols=115 Identities=10% Similarity=-0.017 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chh---hHHHHHHHHhhh---cCCCcceEEEecCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQ---ALEGVAMELEDS---LFPLLREVKIGINPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~---~l~g~a~DL~d~---~~~~~~~v~i~~~~~ea 169 (398)
+||.|+||+|+||++++..|+..|. .|.. + ++ +.+ .+... .++... ......++.-.....++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~ 71 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY-----SVNT--T--IRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAA 71 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--CCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHH
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC-----EEEE--E--EeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHH
Confidence 5899999999999999999998774 2432 1 22 221 11111 111100 00000111101123456
Q ss_pred cCCCcEEEEeCCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 170 FEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~-r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++++|+||.+++.......+ ..+++..|+.-...+.+.+.+. ..-..+|++|
T Consensus 72 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~-~~~~~iV~~S 124 (322)
T 2p4h_X 72 IEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNS-KTVKRFIYTS 124 (322)
T ss_dssp HTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTC-SSCCEEEEEE
T ss_pred HcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEec
Confidence 78999999988632111111 2236788888888888887764 1224566555
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.021 Score=52.37 Aligned_cols=111 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc-c--cchhhHHHHHHHHhhhcCCCcceEEEecC-------c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-E--RSLQALEGVAMELEDSLFPLLREVKIGIN-------P 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~-D--~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~ 166 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ . + ++.+.++....++ . . .++.-..+ .
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~~~~r~~~~~~~~~~~~-~---~--~~~~~~~~v~~~~~~~ 66 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY-----TVVC----HDASFADAAERQRFESEN-P---G--TIALAEQKPERLVDAT 66 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHHHHHHS-T---T--EEECCCCCGGGHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----ecCCcCCHHHHHHHHHHh-C---C--CcccCHHHHHHHHHHH
Confidence 4789999999999999999999875 2443 4 4 6777776555554 1 1 01110001 1
Q ss_pred ccccCCCcEEEEeCCCCCC----C--CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPRG----P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~rk----~--g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|.... + ..+. ...+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 67 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 135 (244)
T 1zmo_A 67 LQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA--GGASVIFITSS 135 (244)
T ss_dssp GGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCh
Confidence 2234478999999886532 2 1121 23455554 3455566666553 46888888754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.022 Score=53.44 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (398)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.+|.+.. + .++.+ ..| +.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~v 78 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI-----MVVL----TCRDVTKGHEAVEKLKNSN-H--ENVVFHQLDVTDPIATM 78 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT-C--CSEEEEECCTTSCHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C--CceEEEEccCCCcHHHH
Confidence 346899999999999999999999875 2443 4678888877777776532 1 12221 111 21
Q ss_pred --------cccCCCcEEEEeCCCC
Q 015897 168 --------ELFEDAEWALLIGAKP 183 (398)
Q Consensus 168 --------eal~dADiViitag~~ 183 (398)
+.+...|++|..+|..
T Consensus 79 ~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 79 SSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCccc
Confidence 1134789999998864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.043 Score=45.72 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-Cccc-----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYE-----L 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~e-----a 169 (398)
|++|.|+|+ |.+|.+++..|...|. ++.+ +|.++++++....+ . . .+.... .+.+ .
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~-----~V~~----id~~~~~~~~~~~~----~--~--~~~~gd~~~~~~l~~~~ 67 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGK-----KVLA----VDKSKEKIELLEDE----G--F--DAVIADPTDESFYRSLD 67 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHHT----T--C--EEEECCTTCHHHHHHSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHHHC----C--C--cEEECCCCCHHHHHhCC
Confidence 568999995 9999999999998875 3543 47777766533221 1 1 111111 1121 3
Q ss_pred cCCCcEEEEeCC
Q 015897 170 FEDAEWALLIGA 181 (398)
Q Consensus 170 l~dADiViitag 181 (398)
+.++|+||++.+
T Consensus 68 ~~~~d~vi~~~~ 79 (141)
T 3llv_A 68 LEGVSAVLITGS 79 (141)
T ss_dssp CTTCSEEEECCS
T ss_pred cccCCEEEEecC
Confidence 578999998754
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.029 Score=51.69 Aligned_cols=113 Identities=9% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--------P 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--------~ 166 (398)
|+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++.... +.... . ++... .+ .
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~-l~~~~-~---~~~~~d~~~v~~~~~~~ 66 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGH-----TVAC----HDESFKQKDELEA-FAETY-P---QLKPMSEQEPAELIEAV 66 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHH-HHHHC-T---TSEECCCCSHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH-HHhcC-C---cEEEECHHHHHHHHHHH
Confidence 45799999999999999999999875 2443 3666666654432 43321 1 11110 11 1
Q ss_pred ccccCCCcEEEEeCCCC-C-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKP-R-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~-r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|.. . .+ ..+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 67 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 133 (254)
T 1zmt_A 67 TSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITSA 133 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCS
T ss_pred HHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCc
Confidence 12234789999999865 2 22 1121 233555543 455566666653 45778877754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.022 Score=46.92 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-Ccc----c-c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPY----E-L 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~----e-a 169 (398)
+.+|.|+|+ |.+|..++..|...+. ++.+ +|+++++++ .+.+.. ..+.... .+. + .
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~-----~v~~----~d~~~~~~~----~~~~~~----~~~~~~d~~~~~~l~~~~ 67 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGH-----EVLA----VDINEEKVN----AYASYA----THAVIANATEENELLSLG 67 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CCEE----EESCHHHHH----TTTTTC----SEEEECCTTCHHHHHTTT
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHH----HHHHhC----CEEEEeCCCCHHHHHhcC
Confidence 458999996 9999999999998774 2443 366655443 122111 1111111 111 2 2
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++++|+||++.+.+ ...|.. ++..+++. +++-++...+||..
T Consensus 68 ~~~~d~vi~~~~~~----------~~~~~~----~~~~~~~~-~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 68 IRNFEYVIVAIGAN----------IQASTL----TTLLLKEL-DIPNIWVKAQNYYH 109 (144)
T ss_dssp GGGCSEEEECCCSC----------HHHHHH----HHHHHHHT-TCSEEEEECCSHHH
T ss_pred CCCCCEEEECCCCc----------hHHHHH----HHHHHHHc-CCCeEEEEeCCHHH
Confidence 67899999987642 122322 33344455 56645555666644
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0078 Score=55.40 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++. .. .+ ...+ .+.
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~-~~-~~--~~D~--~~~~~~~~~~~ 69 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGA-----RLVA----CDIEEGPLREAAEAVG-AH-PV--VMDV--ADPASVERGFA 69 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTT-CE-EE--ECCT--TCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcC-CE-EE--EecC--CCHHHHHHHHH
Confidence 46899999999999999999999874 2443 3667666665444331 00 00 0011 111
Q ss_pred ---cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ---ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ---eal~dADiViitag~~rk~g---~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+. ...+..|..- .+...+.+.+ ...+.||+++--
T Consensus 70 ~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~~~g~iv~isS~ 137 (245)
T 1uls_A 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMRE--KNPGSIVLTASR 137 (245)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEEccc
Confidence 22335899999988653211 111 2345556544 3444444444 245788888753
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.014 Score=54.16 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=60.9
Q ss_pred eccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH---HHHHHhhhcCCCcc
Q 015897 82 YDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLR 158 (398)
Q Consensus 82 ~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g---~a~DL~d~~~~~~~ 158 (398)
|+++-.+...+..+.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++. ...|+.+..
T Consensus 7 ~~~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~Dl~d~~----- 72 (253)
T 2nm0_A 7 HHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGD-----KVAI--T--YRSGEPPEGFLAVKCDITDTE----- 72 (253)
T ss_dssp -------------CCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSSCCCTTSEEEECCTTSHH-----
T ss_pred ccccCCCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCChHhhccceEEEecCCCHH-----
Confidence 4444444332333346899999999999999999999874 2433 2 344333221 000111000
Q ss_pred eEE-EecCcccccCCCcEEEEeCCCCCC-C-----CCchhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 159 EVK-IGINPYELFEDAEWALLIGAKPRG-P-----GMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 159 ~v~-i~~~~~eal~dADiViitag~~rk-~-----g~~r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+. ......+.+...|++|..+|.... + ..+-...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 73 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 147 (253)
T 2nm0_A 73 QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA--KKGRVVLISSV 147 (253)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECch
Confidence 000 000011223457999999886532 1 1122334555654 445555566553 46788887754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.017 Score=55.54 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++.... . ...+. +..| +.+
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGC-----KVAI----ADIRQDSIDKALATLEAEG-S-GPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHT-C-GGGEEEEECCTTCHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C-CCeEEEEECCCCCHHHHHH
Confidence 35899999999999999999999875 2443 4678788877776665432 1 01121 1111 222
Q ss_pred c-------cCCCcEEEEeCCCCC-CCC--Cc---hhhhHHHHHH----HHHHHHHHHHHh----cCCCeEEEEECCC
Q 015897 169 L-------FEDAEWALLIGAKPR-GPG--ME---RAGLLDINGQ----IFAEQGKALNAV----ASRNVKVIVVGNP 224 (398)
Q Consensus 169 a-------l~dADiViitag~~r-k~g--~~---r~dll~~N~~----i~~~i~~~i~~~----a~p~a~vIvvtNP 224 (398)
+ +...|++|.++|... .+- .+ -.+++..|+. +.+.+.+.+.+. ....+.||+++--
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~ 153 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM 153 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence 2 236699999998642 121 11 1234555533 444555555442 0146778887744
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.012 Score=54.16 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC---CcceEEE-ecC--ccc-
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---LLREVKI-GIN--PYE- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~---~~~~v~i-~~~--~~e- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++...... ...++.+ ..| +.+
T Consensus 7 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 7 SALALVTGAGSGIGRAVSVRLAGEGA-----TVAA----CDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARA 77 (264)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHTC------------CCEEEECCTTSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHH
Confidence 35899999999999999999999874 2443 366766666555444321100 0011111 111 222
Q ss_pred ---ccCC-------C-cEEEEeCCCCCCCC---Cc---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 ---LFED-------A-EWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 ---al~d-------A-DiViitag~~rk~g---~~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+++ . |+||..+|...... .+ -.+.+..|.. +.+...+.+.+. ...+.||+++-.
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 153 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSN-GCRGSIINISSI 153 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCceEEEECCh
Confidence 2222 3 99999988653211 11 1234555544 444444445443 225788888754
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.014 Score=57.26 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc---ch-hhHHHHHHHHhhhcCCCcceEEEecC-cccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---SL-QALEGVAMELEDSLFPLLREVKIGIN-PYEL 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~---~~-~~l~g~a~DL~d~~~~~~~~v~i~~~-~~ea 169 (398)
.|+||+|+||+|.+|..++..|....-+ ++.. +.... +. +.+....-.+.. . .+..+..- +.++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~----el~~--l~s~~~~~saGk~~~~~~p~~~~----~-~~~~v~~~~~~~~ 71 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHM----NITA--LTVSAQSNDAGKLISDLHPQLKG----I-VELPLQPMSDISE 71 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTE----EEEE--EEEETTCTTTTSBHHHHCGGGTT----T-CCCBEEEESSGGG
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCC----cEEE--EEecCchhhcCCchHHhCccccC----c-cceeEeccCCHHH
Confidence 4789999999999999999988875432 2332 21222 11 111111000110 0 12223221 3455
Q ss_pred c-CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 170 F-EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 170 l-~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+ +++|+||++.+ ...-+++++.+.+ .+++||-.|.+-
T Consensus 72 ~~~~~Dvvf~a~p----------------~~~s~~~~~~~~~---~g~~vIDlSa~f 109 (337)
T 3dr3_A 72 FSPGVDVVFLATA----------------HEVSHDLAPQFLE---AGCVVFDLSGAF 109 (337)
T ss_dssp TCTTCSEEEECSC----------------HHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred HhcCCCEEEECCC----------------hHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence 6 89999999865 2344556655544 378888888773
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.036 Score=52.60 Aligned_cols=115 Identities=10% Similarity=0.094 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... ....++. +..| +.+
T Consensus 26 ~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~d~~~v~~ 95 (297)
T 1xhl_A 26 GKSVIITGSSNGIGRSAAVIFAKEGA-----QVTI----TGRNEDRLEETKQQILKAG-VPAEKINAVVADVTEASGQDD 95 (297)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CCCceEEEEecCCCCHHHHHH
Confidence 46899999999999999999999875 2443 3677777776666665421 1000121 1111 221
Q ss_pred -------ccCCCcEEEEeCCCCCC-C----CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKPRG-P----GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~----g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. . +.||+++-
T Consensus 96 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~-g~IV~isS 166 (297)
T 1xhl_A 96 IINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--K-GEIVNVSS 166 (297)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-CEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 22378999999886532 2 1121 123555543 445555555542 3 77777774
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.044 Score=50.89 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... +.. ++. +..| +.
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~-~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGA-----AVAF----CARDGERLRAAESALRQRF-PGA-RLFASVCDVLDALQVRA 76 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHS-TTC-CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-CCc-eEEEEeCCCCCHHHHHH
Confidence 46899999999999999999999875 2443 3677788887777776522 111 111 1111 12
Q ss_pred ------cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+..-|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+ ...+.||+++-.
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~~~g~iv~isS~ 147 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLES--RADAAIVCVNSL 147 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--STTEEEEEEEEG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCeEEEEECCc
Confidence 223467999999886532 1 12222 34555644 34445555554 246777777643
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.025 Score=51.91 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.......++.... + .++.. ..| +.+
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~~~ 81 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGA-----NVAV----IYRSAADAVEVTEKVGKEF-G--VKTKAYQCDVSNTDIVTK 81 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE-----EEEE----EESSCTTHHHHHHHHHHHH-T--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCcchhhHHHHHHHHHhc-C--CeeEEEEeeCCCHHHHHH
Confidence 45899999999999999999999874 2443 2454444443344443211 1 11111 111 121
Q ss_pred -------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ...+.||+++--
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 153 (265)
T 1h5q_A 82 TIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQK-QQKGSIVVTSSM 153 (265)
T ss_dssp HHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhc-CCCceEEEeCCc
Confidence 2345899999988653211 111 223555543 444444455443 334777777743
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0037 Score=59.04 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-----hhhHHHHHHHHhhhcCCC-cceEEEecCcccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----LQALEGVAMELEDSLFPL-LREVKIGINPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-----~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~ea 169 (398)
++||.|+||+|++|++++..|+..|. .|.. + +++ .++++. ..++....... ..++.-.....++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~~~ 73 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH-----PTYV--L--FRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDA 73 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-----CEEE--E--CCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-----cEEE--E--ECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHHHH
Confidence 57899999999999999999998873 2443 2 343 233321 12222111000 0011000113467
Q ss_pred cCCCcEEEEeCCCC
Q 015897 170 FEDAEWALLIGAKP 183 (398)
Q Consensus 170 l~dADiViitag~~ 183 (398)
++++|+||.+++..
T Consensus 74 ~~~~d~vi~~a~~~ 87 (313)
T 1qyd_A 74 LKQVDVVISALAGG 87 (313)
T ss_dssp HTTCSEEEECCCCS
T ss_pred HhCCCEEEECCccc
Confidence 88999999988754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.07 Score=50.06 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
-+.+.|+||++.||..++..|+..|- .|++ .|+++++++..+.+++....... ....++. .
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga-----~Vv~----~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDS-----IVVA----VELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45788889999999999999999885 2544 47888899888888875421100 0111110 1
Q ss_pred cccccCCCcEEEEeCCCC--CCCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 PYELFEDAEWALLIGAKP--RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ~~eal~dADiViitag~~--rk~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
-.+.+..-|++|..+|.. ++|- ++.. ..+..| .-..+...+.|.+. ..|.||+++-
T Consensus 78 ~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS 144 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ--GKGVIVNTAS 144 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEec
Confidence 235567899999998854 3332 2222 234444 34677888888875 4688888874
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.01 Score=55.81 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=67.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--c-------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------- 166 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... ++. +..| +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~ 87 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-----SLVL----TGRREERLQALAGELSAKT-----RVLPLTLDVRDRAAMSAA 87 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-----CEEEEECCTTCHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhcCC-----cEEEEEcCCCCHHHHHHH
Confidence 5799999999999999999999874 2443 3677777776666664310 111 1111 1
Q ss_pred ----ccccCCCcEEEEeCCCCC--CCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCe-EEEEECCC
Q 015897 167 ----YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNV-KVIVVGNP 224 (398)
Q Consensus 167 ----~eal~dADiViitag~~r--k~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a-~vIvvtNP 224 (398)
.+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. . .+ .||+++--
T Consensus 88 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~-~g~~IV~isS~ 159 (272)
T 2nwq_A 88 VDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH-G-AGASIVNLGSV 159 (272)
T ss_dssp HHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-C-TTCEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCcEEEEeCCc
Confidence 122345699999988653 221 111 223455533 355666666664 3 45 77777743
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=54.65 Aligned_cols=114 Identities=9% Similarity=0.017 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... ++.+ ..| +.+
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~ 80 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-----KVVI----ADIADDHGQKVCNNIGSPD-----VISFVHCDVTKDEDVR 80 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-----TEEEEECCTTCHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCChhHHHHHHHHhCCCC-----ceEEEECCCCCHHHHH
Confidence 346899999999999999999999874 2443 3566666555554443210 1111 111 222
Q ss_pred -c-------cCCCcEEEEeCCCCCC---C--CCc---hhhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -L-------FEDAEWALLIGAKPRG---P--GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -a-------l~dADiViitag~~rk---~--g~~---r~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
. +...|+||..+|.... + ..+ -.+.+..|..- .+...+.+.+. ..+.||+++-.
T Consensus 81 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 154 (278)
T 2bgk_A 81 NLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASI 154 (278)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCCeEEEEeec
Confidence 2 2378999998886421 1 111 12345556443 34444444442 46788887743
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.039 Score=51.59 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEE-EecC--cc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVK-IGIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~---- 167 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ . ++ +.+.++....++.... . ++. +..| +.
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~-----~V~~--~--~~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~d~~~v~ 94 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGA-----KVAV--N--YASSAGAADEVVAAIAAAG-G---EAFAVKADVSQESEVE 94 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--E--ESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCChHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHH
Confidence 45788999999999999999999875 2443 2 33 5566666666655432 1 111 1111 22
Q ss_pred -------cccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 -------ELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 -------eal~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|...... .+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 95 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 165 (269)
T 4dmm_A 95 ALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ--RSGRIINIAS 165 (269)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECc
Confidence 22237899999988753221 1221 23455533 455556666653 4677777764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=60.82 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-e---cC----cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G---IN----PY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~---~~----~~ 167 (398)
|||.|+||+|++|++++..|+.. +. .|.. ++++.+.++ ++... + .+.+ . ++ ..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~----~~r~~~~~~----~~~~~--~---~~~~~~~D~~~~~~~~~ 62 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY-----EVYG----LDIGSDAIS----RFLNH--P---HFHFVEGDISIHSEWIE 62 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC-----EEEE----EESCCGGGG----GGTTC--T---TEEEEECCTTTCSHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC-----EEEE----EeCCcchHH----HhhcC--C---CeEEEeccccCcHHHHH
Confidence 48999999999999999999986 43 2432 244433322 11110 0 1111 1 11 12
Q ss_pred cccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
++++++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. . ..+|.+|-
T Consensus 63 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~SS 117 (345)
T 2bll_A 63 YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 117 (345)
T ss_dssp HHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred hhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEEec
Confidence 3566899999998754211 1123456677877778888888774 3 67777764
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.033 Score=51.83 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--C
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (398)
+++||.|+||+|++|++++..|+..+.........+..+..|.. +.. ...++++ +
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~~D~~------------d~~-----------~~~~~~~~~~ 61 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLT------------DTA-----------QTRALFEKVQ 61 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTTCCTT------------SHH-----------HHHHHHHHSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCceecccC------------CHH-----------HHHHHHhhcC
Confidence 46899999999999999999999887511100011100011221 100 0112222 4
Q ss_pred CcEEEEeCCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 173 AEWALLIGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 173 ADiViitag~~rk---~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+|+||.+++.... ...+..+.+..|+.-...+.+.+.+. +. ..+|.+|
T Consensus 62 ~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~-~~~v~~S 112 (319)
T 4b8w_A 62 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GA-RKVVSCL 112 (319)
T ss_dssp CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TC-SEEEEEC
T ss_pred CCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEEc
Confidence 8999999876321 11234567888999889999988875 32 3555555
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.04 Score=51.32 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEEE-ecC--cc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~--- 167 (398)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .++ +++.++....++.... .++.+ ..| +.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v 94 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGL-----KVWI----NYRSNAEVADALKNELEEKG----YKAAVIKFDAASESDF 94 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHH
Confidence 346899999999999999999999875 2433 244 4455555555554322 11111 111 11
Q ss_pred -c-------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 -E-------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 -e-------al~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+ .+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 95 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 166 (271)
T 4iin_A 95 IEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS--RFGSVVNVAS 166 (271)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEec
Confidence 1 2237899999988753221 121 233455533 456666666664 4577888774
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0071 Score=55.96 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Cc-------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP------- 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~------- 166 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... .+ ....++. +.
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGA-----TVLG----LDLKPPAGEEPAAELGAAV-RF-RNADVTNEADATAALAFA 75 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESSCC------------C-EE-EECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHhCCce-EE-EEccCCCHHHHHHHHHHH
Confidence 46889999999999999999999875 2443 3566666655544442111 00 0001110 01
Q ss_pred ccccCCCcEEEEeCCCCCCCC-------Cch---hhhHHHHHH----HHHHHHHHHHHhc----CCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPRGPG-------MER---AGLLDINGQ----IFAEQGKALNAVA----SRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g-------~~r---~dll~~N~~----i~~~i~~~i~~~a----~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+.. ...+.||+++--
T Consensus 76 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~ 151 (257)
T 3tpc_A 76 KQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASI 151 (257)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEech
Confidence 122338999999988653211 111 223555543 3444445554420 145778888754
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=54.05 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=23.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
..++++|.|+||+|.+|.+++..|+..|
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G 45 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLP 45 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcC
Confidence 3446789999999999999999999887
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0098 Score=50.69 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCCcceEEEec--C---c-cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGI--N---P-YE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~~~~v~i~~--~---~-~e 168 (398)
..+|.|+|+ |.+|+.++..|...+. ++.+ +|.+ +++++.....+.+. ..+..+. + . ..
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~-----~V~v----id~~~~~~~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a 67 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQ-----NVTV----ISNLPEDDIKQLEQRLGDN-----ADVIPGDSNDSSVLKKA 67 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EECCCHHHHHHHHHHHCTT-----CEEEESCTTSHHHHHHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCChHHHHHHHHhhcCC-----CeEEEcCCCCHHHHHHc
Confidence 358999995 9999999999988764 3554 3565 34443222222111 1222211 1 1 12
Q ss_pred ccCCCcEEEEeCC
Q 015897 169 LFEDAEWALLIGA 181 (398)
Q Consensus 169 al~dADiViitag 181 (398)
.+.+||+||++.+
T Consensus 68 ~i~~ad~vi~~~~ 80 (153)
T 1id1_A 68 GIDRCRAILALSD 80 (153)
T ss_dssp TTTTCSEEEECSS
T ss_pred ChhhCCEEEEecC
Confidence 4889999998854
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.052 Score=51.22 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc-cchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D-~~~~~l~g~a~DL~ 150 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+ ++.+.++..+.++.
T Consensus 9 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~~r~~~~~~~~~~~l~ 55 (291)
T 1e7w_A 9 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCL----HYHRSAAEANALSATLN 55 (291)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EcCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875 2443 36 77777776666664
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.068 Score=49.53 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.+.. . ++. +..| +.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGA-----DLVL----AARTVERLEDVAKQVTDTG-R---RALSVGTDITDDAQVAH 77 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 45899999999999999999999875 2443 3678788887777776432 1 111 1111 22
Q ss_pred ------cccCCCcEEEEeCCCC--CCC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ------ELFEDAEWALLIGAKP--RGP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 ------eal~dADiViitag~~--rk~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.. ..+ ..+.. ..+..|.. +.+.+.+.+.+. ++.||+++--
T Consensus 78 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~---~g~iv~isS~ 148 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES---KGAVVNVNSM 148 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH---TCEEEEECCG
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 2234789999988763 222 11222 23444533 455555556553 3777777653
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0081 Score=61.40 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=63.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh---hHHHHHHHHhhhc-----CCCcceEEEec-
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSL-----FPLLREVKIGI- 164 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~---~l~g~a~DL~d~~-----~~~~~~v~i~~- 164 (398)
..+++|.|+||+|++|++++..|...+. .|. ++ +++.. .++.....|.... ......+.+..
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~-----~V~--~l--~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~ 218 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSH-----RIY--CF--IRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG 218 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEE-----EEE--EE--EESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEE
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCC-----EEE--EE--ECCCChHHHHHHHHHHHHHhcccccchhccCceEEEec
Confidence 3468999999999999999999855442 232 22 34433 2222222222110 00001222211
Q ss_pred C--c---ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 165 N--P---YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 165 ~--~---~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
| + ..++.++|+||.+++... ...+..++...|+.-...+++.+.+. ...++.+|
T Consensus 219 Dl~d~~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~v~iS 277 (508)
T 4f6l_B 219 DFECMDDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQH---HARLIYVS 277 (508)
T ss_dssp BTTBCSSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred CCcccccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHhC---CCcEEEeC
Confidence 1 1 125679999999987642 22344566778999999999888762 34555554
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.043 Score=51.86 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-HHHHHHHHhhhcCCCcceEEE-ecC--cc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . +++.+. .+.....++... .++.. ..| ++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~ 113 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-----NIAI--A--YLDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCK 113 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHH
Confidence 45899999999999999999999875 2443 2 444332 332333333211 12221 111 22
Q ss_pred -------cccCCCcEEEEeCCCCCCCC----Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -------ELFEDAEWALLIGAKPRGPG----MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -------eal~dADiViitag~~rk~g----~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.....+ .+. ...+..|..-...+.+.+..+-...+.||+++--
T Consensus 114 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~ 184 (291)
T 3ijr_A 114 DIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI 184 (291)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence 22337899999887642211 122 2456777666666666665543346778877743
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0058 Score=59.75 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=64.6
Q ss_pred CEEEEEcCCCchHHHHHHHHH-hcCcCCCCCceEEEecccccchhh---------HHHHHHHHhhhcCCC--cce---EE
Q 015897 97 VNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQA---------LEGVAMELEDSLFPL--LRE---VK 161 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~i~L~L~d~D~~~~~---------l~g~a~DL~d~~~~~--~~~---v~ 161 (398)
|||.|+||+|+||++++..|+ ..|. .|.+ + +++... .+.....+++.. .. ... +.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 72 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNH-----SVVI--V--DSLVGTHGKSDHVETRENVARKLQQSD-GPKPPWADRYAA 72 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC-----EEEE--E--ECCTTTTTCCTTSCCHHHHHHHHHHSC-SSCCTTTTCCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCC-----EEEE--E--ecCCcccccccccchHHHHHHHHHHhh-ccccccCCceEE
Confidence 589999999999999999999 8763 2433 2 333221 222211122111 10 001 21
Q ss_pred E-ecC--c----ccccC--C-CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 162 I-GIN--P----YELFE--D-AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 162 i-~~~--~----~eal~--d-ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+ ..| + .++++ + .|+||.+++..... ..+..+.+..|+.-...+.+.+.+. . -..+|++|
T Consensus 73 ~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~-~~~iv~~S 143 (397)
T 1gy8_A 73 LEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-K-CDKIIFSS 143 (397)
T ss_dssp EEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-C-CCEEEEEC
Confidence 1 111 1 23344 5 99999998854211 1123456788888888888888774 3 34555554
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.057 Score=50.42 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc------------hhhHHHHHHHHhhhcCCCcceEE-E
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS------------LQALEGVAMELEDSLFPLLREVK-I 162 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~------------~~~l~g~a~DL~d~~~~~~~~v~-i 162 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . |++ .+.++....++.... . ++. +
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 76 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGA-----DIAI--C--DRCENSDVVGYPLATADDLAETVALVEKTG-R---RCISA 76 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSCCTTCSSCCCCHHHHHHHHHHHHHTT-C---CEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE--E--eCCccccccccccccHHHHHHHHHHHHhcC-C---eEEEE
Confidence 46899999999999999999999875 2443 2 443 445554544444322 1 111 1
Q ss_pred ecC--cc-----------cccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEE
Q 015897 163 GIN--PY-----------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVI 219 (398)
Q Consensus 163 ~~~--~~-----------eal~dADiViitag~~r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vI 219 (398)
..| +. +.+...|++|..+|... .+ ..+. ...+..|+. +.+.+.+.+.+. ..+.||
T Consensus 77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv 154 (281)
T 3s55_A 77 KVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR--NYGRIV 154 (281)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEE
Confidence 111 11 22337899999988653 22 2222 233555543 455555556664 468888
Q ss_pred EECCC
Q 015897 220 VVGNP 224 (398)
Q Consensus 220 vvtNP 224 (398)
+++--
T Consensus 155 ~isS~ 159 (281)
T 3s55_A 155 TVSSM 159 (281)
T ss_dssp EECCG
T ss_pred EECCh
Confidence 88753
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.038 Score=51.36 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=35.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhh
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELED 151 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d 151 (398)
+++.|+||+|.||.+++..|+..|. .|.+ .++ +++.++..+.++..
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~ 58 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGF-----RVVV----HYRHSEGAAQRLVAELNA 58 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCChHHHHHHHHHHHH
Confidence 5799999999999999999999874 2443 366 66777766666653
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=58.24 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+|+||+|.+|..++..|...+. . .+.|.++....+.. ....+. ..+..+..-+.++++++|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p---~~el~~~as~~saG----~~~~~~------~~~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARSAG----KSLKFK------DQDITIEETTETAFEGVDI 67 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC-C---EEEEEEEECTTTTT----CEEEET------TEEEEEEECCTTTTTTCSE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC-C---cEEEEEEEccccCC----Ccceec------CCCceEeeCCHHHhcCCCE
Confidence 36999999999999999998877642 1 13444432222211 111111 1233343334567899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||++.+
T Consensus 68 vf~a~~ 73 (366)
T 3pwk_A 68 ALFSAG 73 (366)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 999754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0016 Score=60.95 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCC-C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED-A 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d-A 173 (398)
++||.|+| +|++|++++..|+..|. .|.. ++++.+.+ .... .+ ..++.-.....+++++ +
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~-------~~~~-~~~~~Dl~d~~~~~~~~~~~~ 64 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGH-----EVTG----LRRSAQPM-------PAGV-QTLIADVTRPDTLASIVHLRP 64 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----EECTTSCC-------CTTC-CEEECCTTCGGGCTTGGGGCC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCCcccc-------ccCC-ceEEccCCChHHHHHhhcCCC
Confidence 57999999 59999999999999874 2433 24443331 1100 00 0011000112345555 9
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+||.+++... .+..+....|+.-...+.+.+.+. .-..+|.+|
T Consensus 65 d~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~--~~~~~v~~S 108 (286)
T 3gpi_A 65 EILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGA--PLQHVFFVS 108 (286)
T ss_dssp SEEEECHHHHH---HC-----CCSHHHHHHHHHHTTTS--CCCEEEEEE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhC--CCCEEEEEc
Confidence 99999886421 122344556777777887777763 234566555
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.053 Score=50.79 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . +++ +.++..+.++.+.. .++.. ..| +.+
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~--~--~r~-~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 96 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGA-----HVLA--W--GRT-DGVKEVADEIADGG----GSAEAVVADLADLEGAAN 96 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESS-THHHHHHHHHHTTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--cCH-HHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2443 2 433 44555555555322 11211 111 111
Q ss_pred ------ccCCCcEEEEeCCCCCC-CC--Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 ------LFEDAEWALLIGAKPRG-PG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 ------al~dADiViitag~~rk-~g--~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... +- .+. ...+..|. .+.+.+.+.+.+. ..+.||+++--
T Consensus 97 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 166 (273)
T 3uf0_A 97 VAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH--GSGRIVTIASM 166 (273)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence 22478999999887532 21 121 22345553 3455566666664 46788887754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.041 Score=46.17 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-Ccc-----ccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPY-----ELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~-----eal 170 (398)
.+|.|+|+ |.+|..++..|...|. ++.+ +|.++++++... +.. . .+..+. .+. ..+
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~-----~v~v----id~~~~~~~~~~----~~g--~--~~i~gd~~~~~~l~~a~i 69 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDI-----PLVV----IETSRTRVDELR----ERG--V--RAVLGNAANEEIMQLAHL 69 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHH----HTT--C--EEEESCTTSHHHHHHTTG
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHH----HcC--C--CEEECCCCCHHHHHhcCc
Confidence 48999995 9999999999998775 3544 477777765322 111 1 121211 111 236
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+||+||++.+.. ..|..+ +..+++. .|+..+|.-.|
T Consensus 70 ~~ad~vi~~~~~~-----------~~n~~~----~~~a~~~-~~~~~iiar~~ 106 (140)
T 3fwz_A 70 ECAKWLILTIPNG-----------YEAGEI----VASARAK-NPDIEIIARAH 106 (140)
T ss_dssp GGCSEEEECCSCH-----------HHHHHH----HHHHHHH-CSSSEEEEEES
T ss_pred ccCCEEEEECCCh-----------HHHHHH----HHHHHHH-CCCCeEEEEEC
Confidence 7899999875421 233333 3344554 57777666554
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=52.94 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... ....++.. ..| +. +
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~ 75 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGA-----KVTI----TGRHAERLEETRQQILAAG-VSEQNVNSVVADVTTDAGQDE 75 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcc-cCCCceeEEecccCCHHHHHH
Confidence 35799999999999999999999874 2443 3677777776666662111 11112221 111 11 2
Q ss_pred ccC-------CCcEEEEeCCCCCC-C--CC----ch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFE-------DAEWALLIGAKPRG-P--GM----ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~-------dADiViitag~~rk-~--g~----~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.++ +.|++|..+|.... + .. +. ...+..|.. +.+...+.+.+. ++.||+++--
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~ 149 (278)
T 1spx_A 76 ILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST---KGEIVNISSI 149 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCeEEEEecc
Confidence 233 79999999886421 1 11 21 123445543 445555555543 2777777654
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.018 Score=58.55 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=67.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC------------CcceEE
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP------------LLREVK 161 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~------------~~~~v~ 161 (398)
.++++|.|+||+|++|++++..|+..+-.+. .|.+ + +++.+...+ ...|.+.... ...++.
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~--l--~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~ 143 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLIC--L--VRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLE 143 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEE--E--ECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEE--E--ECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceE
Confidence 4578999999999999999999998732111 2432 2 444332221 1112211100 001222
Q ss_pred EecCc-------------ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 162 IGINP-------------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 162 i~~~~-------------~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+...| .+.++++|+||.+++.... ....+.+..|+.-...+++.+.+. ..+ .+|.+|
T Consensus 144 ~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~~V~iS 213 (478)
T 4dqv_A 144 VVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTT-KLK-PFTYVS 213 (478)
T ss_dssp EEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSS-SCC-CEEEEE
T ss_pred EEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhC-CCC-eEEEEe
Confidence 22111 2345689999999886532 333456788988888898888774 333 344444
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.053 Score=52.35 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecc-cccchhhHHHHHHHHhhhcCCCcceE--EEec--Cccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSLFPLLREV--KIGI--NPYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d-~D~~~~~l~g~a~DL~d~~~~~~~~v--~i~~--~~~eal 170 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+..-+ .+++.++++.....+.... ....-+ .++. +..+++
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~-----~V~~~~r~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~Dvtd~~~v~~~~ 78 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGH-----RVYASMRDIVGRNASNVEAIAGFARDND-VDLRTLELDVQSQVSVDRAI 78 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEEESCTTTTTHHHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEecCcccccCHHHHHHHHHHHHhcC-CcEEEEEeecCCHHHHHHHH
Confidence 45789999999999999999999875 24331111 2455666665554443322 110001 1110 011222
Q ss_pred -------CCCcEEEEeCCCCC-CCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 171 -------EDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 171 -------~dADiViitag~~r-k~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 79 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~--~~g~iV~isS~ 147 (324)
T 3u9l_A 79 DQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ--KHGLLIWISSS 147 (324)
T ss_dssp HHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEecc
Confidence 38999999988642 221 121 234555644 455555555664 46777777743
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=62.38 Aligned_cols=117 Identities=10% Similarity=0.014 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc----cccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~----~eal 170 (398)
++++|.|+||+|+||++++..|+..|. .|.+ + +++.........++.........-+..-..+ .+++
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~ 80 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGY-----DCVV--A--DNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVF 80 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--E--ECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHH
Confidence 457999999999999999999998764 2433 2 3332211111112221100000011110111 2345
Q ss_pred C--CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 ~--dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+ ++|+||.+++..... .....+.+..|+.-...+.+.+.+. . -..+|.+|
T Consensus 81 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~-~~~iV~~S 134 (699)
T 1z45_A 81 KEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-N-VSKFVFSS 134 (699)
T ss_dssp HHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred HhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEEC
Confidence 5 799999998754211 0123456778888888888888775 3 34555554
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0055 Score=58.53 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc---CcCCCCCceEEEecccccch-----hhHHHHHHHHhhhcCCCcceEEE-ecC--
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG---EVLGPDQPIALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GIN-- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~---~~~~~~~~i~L~L~d~D~~~-----~~l~g~a~DL~d~~~~~~~~v~i-~~~-- 165 (398)
|||.|+||+|++|++++..|+.. +.... .|.. + +++. +.++ ++.. ...+.+ ..|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~--~--~r~~~~~~~~~~~----~~~~-----~~~~~~~~~Dl~ 65 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIV--L--DSLTYAGNRANLA----PVDA-----DPRLRFVHGDIR 65 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEE--E--ECCCTTCCGGGGG----GGTT-----CTTEEEEECCTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEE--E--ECCCccCchhhhh----hccc-----CCCeEEEEcCCC
Confidence 58999999999999999999985 41000 2432 2 3321 1111 1111 011211 111
Q ss_pred ----cccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ----PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ----~~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..+++.++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. . -..+|.+|
T Consensus 66 d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~-~~~~v~~S 126 (337)
T 1r6d_A 66 DAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-G-VGRVVHVS 126 (337)
T ss_dssp CHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-T-CCEEEEEE
T ss_pred CHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 134567999999998754210 0122356788888888888888875 2 34566555
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=55.92 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc--chhhHHHHHHHHhhhcCCCcceEEEecCcc----ccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIGINPY----ELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~--~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----eal 170 (398)
|||.|+||+|+||++++..|+..|. .|.+ ++... ..+.++ ++.........-+..-..+. +++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 69 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVII--LDNLCNSKRSVLP----VIERLGGKHPTFVEGDIRNEALMTEIL 69 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTTHHH----HHHHHHTSCCEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--EecCCCcchhHHH----HHHhhcCCcceEEEccCCCHHHHHHHh
Confidence 4899999999999999999998774 2433 22111 112222 12111000000011001122 233
Q ss_pred C--CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 ~--dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+ +.|+||.+++..... ..+..+.+..|+.-...+.+.+.+. + -..+|++|
T Consensus 70 ~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 123 (338)
T 1udb_A 70 HDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N-VKNFIFSS 123 (338)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred hccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-C-CCeEEEEc
Confidence 3 589999998754210 0123456778888888888888774 3 34555554
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.09 Score=49.33 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc-cchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D-~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
+++.|+||+|.||.+++..|+..|. .+.+ . + .+.+.++..+.++.... . ++.. ..| +.+
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~-----~V~~--~--~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~d~~~v~~ 96 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGF-----DIAI--T--GIGDAEGVAPVIAELSGLG-A---RVIFLRADLADLSSHQA 96 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCCHHHHHHHHHHHHHTT-C---CEEEEECCTTSGGGHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----eEEE--E--eCCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHHH
Confidence 5789999999999999999999875 2443 2 4 35666776666665432 1 1111 111 221
Q ss_pred -------ccCCCcEEEEeCCCC---CCCC--Cchh---hhHHHH----HHHHHHHHHHHHHhc-CCCeEEEEECCCc
Q 015897 169 -------LFEDAEWALLIGAKP---RGPG--MERA---GLLDIN----GQIFAEQGKALNAVA-SRNVKVIVVGNPC 225 (398)
Q Consensus 169 -------al~dADiViitag~~---rk~g--~~r~---dll~~N----~~i~~~i~~~i~~~a-~p~a~vIvvtNP~ 225 (398)
.+...|++|..+|.. ..+- .+.. ..+..| ..+.+.+.+.+.+.. ...+.||+++--.
T Consensus 97 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~ 173 (280)
T 4da9_A 97 TVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVS 173 (280)
T ss_dssp HHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_pred HHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchh
Confidence 223789999999862 2221 1211 223334 345566666666641 1267788877543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0077 Score=54.48 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=44.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (398)
|||.|+|+ |.+|++++..|...+. ++.+ +|.++++++....++. . .+..+. + ....+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-----~v~v----id~~~~~~~~l~~~~~-----~--~~i~gd~~~~~~l~~a~i 63 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-----GVVI----INKDRELCEEFAKKLK-----A--TIIHGDGSHKEILRDAEV 63 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHHHSS-----S--EEEESCTTSHHHHHHHTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHcC-----C--eEEEcCCCCHHHHHhcCc
Confidence 58999995 9999999999998775 3554 4777777664433211 0 111111 1 12347
Q ss_pred CCCcEEEEeCC
Q 015897 171 EDAEWALLIGA 181 (398)
Q Consensus 171 ~dADiViitag 181 (398)
++||+||++.+
T Consensus 64 ~~ad~vi~~~~ 74 (218)
T 3l4b_C 64 SKNDVVVILTP 74 (218)
T ss_dssp CTTCEEEECCS
T ss_pred ccCCEEEEecC
Confidence 89999998754
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.046 Score=50.77 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+. ...+++.+.++..+.++.+.. .++.. ..| +.
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~-~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 80 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESV-----NLVLH-YHQAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAK 80 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSC-----EEEEE-ESCGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE-ecCccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 45899999999999999999999875 24431 112455667777777766432 12211 111 12
Q ss_pred ------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 ------eal~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-.+.+.||+++-..
T Consensus 81 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~ 150 (262)
T 3ksu_A 81 LFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSL 150 (262)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechh
Confidence 12237899999988653221 122 23456676666666666555422467788887543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.038 Score=52.04 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC-CcceEEEe-cC--cccc--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIG-IN--PYEL-- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~-~~~~v~i~-~~--~~ea-- 169 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.....+ ...++... .| +.+.
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 36899999999999999999999874 2443 367777777677776542100 01122211 11 2221
Q ss_pred ---------cCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHh--cCCCeEEEEECCCc
Q 015897 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAV--ASRNVKVIVVGNPC 225 (398)
Q Consensus 170 ---------l~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~--a~p~a~vIvvtNP~ 225 (398)
+...|+||.++|...... .+. ...+..|+.-...+.+.+... ....+.||+++-..
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~ 161 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT 161 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence 235899999988542111 122 234566655444444443221 01257777777543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0072 Score=55.52 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH-HHHHHhhhcCCCcceEEEecCccccc-CCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGINPYELF-EDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g-~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (398)
|++|.|+||+|.||.+++..|+..|. .|.+ . +++++.++. ...|+.+.. .. . .-.+.+ ...
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~Dl~~~~-~v----~---~~~~~~~~~i 63 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGH-----QIVG--I--DIRDAEVIADLSTAEGRKQ-AI----A---DVLAKCSKGM 63 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSSSSEECCTTSHHHHHH-HH----H---HHHTTCTTCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCchhhccccccCCCCHH-HH----H---HHHHHhCCCC
Confidence 45799999999999999999999874 2443 2 444332210 222333221 00 0 000122 567
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|++|..+|.....+ .-.+.+..|.. +.+...+.+.+ ...+.||+++--.
T Consensus 64 d~lv~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~g~iv~isS~~ 116 (257)
T 1fjh_A 64 DGLVLCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKK--GHQPAAVVISSVA 116 (257)
T ss_dssp SEEEECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHT--SSSCEEEEECCGG
T ss_pred CEEEECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhh--cCCcEEEEECChh
Confidence 99999998653111 12334555543 44445555554 2457888887543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.062 Score=49.32 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEE-EecC--ccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVK-IGIN--PYE--- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e--- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++. +.++. ++++.. . ++. +..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~---~~~~~~-~---~~~~~~~Dv~~~~~v~ 70 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGA-----DIAI----ADLVPAPEAEA---AIRNLG-R---RVLTVKCDVSQPGDVE 70 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCCHHHHH---HHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EcCCchhHHHH---HHHhcC-C---cEEEEEeecCCHHHHH
Confidence 35799999999999999999999874 2443 25555 55543 232211 1 111 1111 222
Q ss_pred --------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHHH----HHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk-~--g~~r---~dll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 142 (249)
T 2ew8_A 71 AFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTST 142 (249)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcch
Confidence 23578999999886532 1 1122 2345555443 55555667664 46788888754
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.061 Score=49.84 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=67.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~------ 167 (398)
++|.|+||+|.+|.+++..|+..|. .+.+ + .+++.+.++....++.... + ++.+ ..| +.
T Consensus 27 k~vlVTGas~gIG~~la~~l~~~G~-----~v~i-~--~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dl~~~~~~~~~ 94 (267)
T 4iiu_A 27 RSVLVTGASKGIGRAIARQLAADGF-----NIGV-H--YHRDAAGAQETLNAIVANG-G---NGRLLSFDVANREQCREV 94 (267)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE-E--ESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE-E--eCCchHHHHHHHHHHHhcC-C---ceEEEEecCCCHHHHHHH
Confidence 5799999999999999999999875 2433 1 2456666666666665432 1 1111 111 11
Q ss_pred -----cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -----eal~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|...... .+. ...+..|.. +++.....+.+. ...+.||+++-.
T Consensus 95 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 165 (267)
T 4iiu_A 95 LEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGA-RQGGRIITLSSV 165 (267)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCH
T ss_pred HHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEEcch
Confidence 12237899999988753211 121 234555543 344444444433 467888888753
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.011 Score=58.04 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
+|+||+|+||+|.+|..++..|...+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p 28 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHP 28 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCC
Confidence 36799999999999999999888654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.07 Score=49.25 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cc---
Q 015897 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY--- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~--vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~--- 167 (398)
.+++.|+||+|. +|.+++..|+..|. .|.+ . +++++..+ ...++.... +. .++. +..| +.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~-~~~~~~~~~-~~-~~~~~~~~D~~~~~~v 74 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGA-----RLIF--T--YAGERLEK-SVHELAGTL-DR-NDSIILPCDVTNDAEI 74 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEE--E--ESSGGGHH-HHHHHHHTS-SS-CCCEEEECCCSSSHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-----EEEE--e--cCchHHHH-HHHHHHHhc-CC-CCceEEeCCCCCHHHH
Confidence 468999999977 99999999999875 2443 2 44443333 223332221 11 0111 1111 11
Q ss_pred --------cccCCCcEEEEeCCCCCC-----C--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 --------ELFEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 --------eal~dADiViitag~~rk-----~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+. ...+..|..-...+.+.+...-.+++.||+++-.
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 75 ETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 122367999999886531 1 1122 2345666665566666665543346788888754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0038 Score=58.78 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-------hhHHHHHHHHhhhcCCCcceEEEe--c--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-------QALEGVAMELEDSLFPLLREVKIG--I-- 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-------~~l~g~a~DL~d~~~~~~~~v~i~--~-- 164 (398)
|+||.|+||+|++|++++..|+..|. .|.. + +++. ++++. ..++.+.. . .+... +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~R~~~~~~~~~~~~~~-~~~l~~~~--v--~~v~~D~~d~ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-----PTYA--L--VRKTITAANPETKEEL-IDNYQSLG--V--ILLEGDINDH 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-----CEEE--E--ECCSCCSSCHHHHHHH-HHHHHHTT--C--EEEECCTTCH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-----cEEE--E--ECCCcccCChHHHHHH-HHHHHhCC--C--EEEEeCCCCH
Confidence 57899999999999999999998873 2433 2 3433 33332 22332211 0 11111 1
Q ss_pred -CcccccCCCcEEEEeCCCC
Q 015897 165 -NPYELFEDAEWALLIGAKP 183 (398)
Q Consensus 165 -~~~eal~dADiViitag~~ 183 (398)
...++++++|+||.+++..
T Consensus 68 ~~l~~~~~~~d~vi~~a~~~ 87 (307)
T 2gas_A 68 ETLVKAIKQVDIVICAAGRL 87 (307)
T ss_dssp HHHHHHHTTCSEEEECSSSS
T ss_pred HHHHHHHhCCCEEEECCccc
Confidence 1246788999999988753
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.053 Score=50.70 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... ....++.. ..| +.+
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~ 75 (280)
T 1xkq_A 6 NKTVIITGSSNGIGRTTAILFAQEGA-----NVTI----TGRSSERLEETRQIILKSG-VSEKQVNSVVADVTTEDGQDQ 75 (280)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHcC-CCCcceEEEEecCCCHHHHHH
Confidence 35799999999999999999999874 2443 3677777776666665321 10001211 111 121
Q ss_pred -------ccCCCcEEEEeCCCCC-CC------CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAKPR-GP------GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~~r-k~------g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. . +.||+++--
T Consensus 76 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS~ 149 (280)
T 1xkq_A 76 IINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--K-GEIVNVSSI 149 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcC--C-CcEEEecCc
Confidence 2236899999988653 22 1111 223455543 344444555443 2 777777643
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.045 Score=51.28 Aligned_cols=116 Identities=11% Similarity=0.063 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh-hHHHHHHHHhhhcCCCcceEE-EecC--cc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVK-IGIN--PY--- 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~-~l~g~a~DL~d~~~~~~~~v~-i~~~--~~--- 167 (398)
+.+++.|+||+|.||.+++..|+..|. .|.+ . +++.+ .++..+.++.... .++. +..| +.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~ 94 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-----KVIV--N--YANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDI 94 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCchHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHH
Confidence 346899999999999999999999875 2443 2 44433 3444444444321 1111 1111 11
Q ss_pred --------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 --------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 --------eal~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+.++-...+.||+++-
T Consensus 95 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 95 VRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 22347899999988653211 121 234667766655666655554224577887774
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.024 Score=55.62 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
++|+||+|+||+|.+|..++..|...+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p 28 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHP 28 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCS
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCC
Confidence 346899999999999999999877653
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.053 Score=50.38 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (398)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+. .+.+.++....++.+.. . ++.+ ..| +.+
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~--~~~-~~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~~~~~v~ 91 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGM-----AVAV--SHS-ERNDHVSTWLMHERDAG-R---DFKAYAVDVADFESCE 91 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE--EEC-SCHHHHHHHHHHHHTTT-C---CCEEEECCTTCHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--EcC-CchHHHHHHHHHHHhcC-C---ceEEEEecCCCHHHHH
Confidence 345788999999999999999999875 2433 221 34455554444444321 1 1111 111 221
Q ss_pred --------ccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 --------LFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 --------al~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 92 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 163 (269)
T 3gk3_A 92 RCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER--RFGRIVNIGSV 163 (269)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEeCCh
Confidence 22378999999886532 1 12222 23445533 455555556553 56888888753
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0039 Score=58.42 Aligned_cols=99 Identities=16% Similarity=0.086 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC--Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--AD 174 (398)
|||.|+||+|++|++++..|+ .|. .|.. + +++.+. ...|+.+. ....+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~-----~V~~--~--~r~~~~---~~~D~~d~-----------~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG-----NLIA--L--DVHSKE---FCGDFSNP-----------KGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS-----EEEE--E--CTTCSS---SCCCTTCH-----------HHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC-----eEEE--e--cccccc---ccccCCCH-----------HHHHHHHHhcCCC
Confidence 489999999999999999998 653 2432 2 443211 00111110 012234444 99
Q ss_pred EEEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.+++.... ...+..+....|+.-...+.+.+.+. +..+|.+|
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~v~~S 103 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET---GAWVVHYS 103 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT---TCEEEEEE
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc---CCcEEEEe
Confidence 99999875421 11234566788888888888888774 23666665
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.05 Score=51.11 Aligned_cols=119 Identities=15% Similarity=0.045 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
-+.+.|+||++.||..++..|+..|- .|++ .|++++.++..+.++.+...... ....++. .
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga-----~Vvi----~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGA-----RVIL----NDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 35677889999999999999999885 3544 47888888878887765421100 0011110 1
Q ss_pred cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~~eal~dADiViitag~~r-k~g--~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+..-|++|..+|... +|- ++.. ..+..|+ -..+...+.+.+. ..+|.||+++--
T Consensus 80 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~~G~IVnisS~ 147 (255)
T 4g81_D 80 LDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIAR-NSGGKIINIGSL 147 (255)
T ss_dssp HHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred HHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-cCCCEEEEEeeh
Confidence 2345667899999988753 221 2222 2345553 3567778888664 467889988844
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=58.47 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|+||.|+||+|++|++++..|+..|.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH 29 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 67899999999999999999998873
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.12 Score=48.68 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--c------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------ 166 (398)
.+++.|+||+|.||.+++..|+..|.-.. .|.+ .+++.+.++..+.++.... +- .++.. ..| +
T Consensus 33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~--~V~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dv~d~~~v~~ 104 (287)
T 3rku_A 33 KKTVLITGASAGIGKATALEYLEASNGDM--KLIL----AARRLEKLEELKKTIDQEF-PN-AKVHVAQLDITQAEKIKP 104 (287)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHHHTTCS--EEEE----EESCHHHHHHHHHHHHHHC-TT-CEEEEEECCTTCGGGHHH
T ss_pred CCEEEEecCCChHHHHHHHHHHHcCCCCc--eEEE----EECCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 45899999999999999999998764110 1333 3677788887777776432 10 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCCCC--CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 -----YELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 -----~eal~dADiViitag~~r--k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|... .+ ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 105 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 176 (287)
T 3rku_A 105 FIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK--NSGDIVNLGSI 176 (287)
T ss_dssp HHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECCh
Confidence 223347899999988643 21 1122 233555533 455556666664 46777887753
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.089 Score=50.72 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc-cchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D-~~~~~l~g~a~DL~ 150 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+ ++.+.++..+.+|.
T Consensus 46 ~k~~lVTGas~GIG~aia~~La~~G~-----~Vv~----~~~r~~~~~~~~~~~l~ 92 (328)
T 2qhx_A 46 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCL----HYHRSAAEANALSATLN 92 (328)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCCHHHHHHHHHHHH
Confidence 35799999999999999999999875 2443 35 67777776666664
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.03 Score=51.12 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++ .+.++....++.... .++.. ..| +.
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 73 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGA-----KVGL----HGRKAPANIDETIASMRADG----GDAAFFAADLATSEACQ 73 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCCTTHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----ECCCchhhHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 45899999999999999999999874 2443 2555 566665555554321 11211 111 22
Q ss_pred cccC-------CCcEEEEeCCC-C-CCC--CCch---hhhHHHHHH----HHHHHHHHHHHhc---CCCeEEEEECCC
Q 015897 168 ELFE-------DAEWALLIGAK-P-RGP--GMER---AGLLDINGQ----IFAEQGKALNAVA---SRNVKVIVVGNP 224 (398)
Q Consensus 168 eal~-------dADiViitag~-~-rk~--g~~r---~dll~~N~~----i~~~i~~~i~~~a---~p~a~vIvvtNP 224 (398)
+.++ +.|+||..+|. . ..+ ..+. ...+..|.. +.+...+.+.+.. .+.+.+|+++--
T Consensus 74 ~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 151 (258)
T 3afn_B 74 QLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSI 151 (258)
T ss_dssp HHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecch
Confidence 2222 79999999885 3 222 1121 223444543 3344444444321 123777777643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.034 Score=51.56 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ . .+.+.+.++....+++... . ++. +..| +.+
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~--~-~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 75 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGA-----NVVL--T-YNGAAEGAATAVAEIEKLG-R---SALAIKADLTNAAEVEA 75 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E-ECSSCHHHHHHHHHHHTTT-S---CCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHHhcC-C---ceEEEEcCCCCHHHHHH
Confidence 46899999999999999999999875 2443 2 1455566665666665432 1 111 1111 121
Q ss_pred -------ccCCCcEEEEeCCCC--CCC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLIGAKP--RGP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViitag~~--rk~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|.. ..+ ..+. ...+..|..-...+.+.+...-.+.+.||+++-
T Consensus 76 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 76 AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 223789999988754 222 1222 234667766666666666554223577888774
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.041 Score=50.49 Aligned_cols=123 Identities=11% Similarity=0.026 Sum_probs=68.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--C-----
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--N----- 165 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~----- 165 (398)
.+.++|.|+||+|.+|.+++..|+..|. .+.+ .+ .++.+.++....++........ ....++. +
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G~-----~v~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 82 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGF-----RVVA--GC-GPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAF 82 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTE-----EEEE--EE-CTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--Ee-CCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHH
Confidence 3457899999999999999999999875 2433 21 2444555555555543221110 0001110 0
Q ss_pred --cccccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 166 --PYELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 166 --~~eal~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
-.+.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++-...
T Consensus 83 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~~ 153 (256)
T 3ezl_A 83 DKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER--GWGRIINISSVNG 153 (256)
T ss_dssp HHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCCG
T ss_pred HHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcchhh
Confidence 11223367999999886532 1 1222 234555544 356666666664 4578888876543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=53.50 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-------ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~e 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+. +....++.. . .+..+++-..+ ..+
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~-~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGA-----LVAL----CDLRPEG-KEVAEAIGG-A-FFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSTTH-HHHHHHHTC-E-EEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCChhH-HHHHHHhhC-C-EEEeeCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999874 2443 2555554 434444421 1 00001000000 112
Q ss_pred ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 137 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASV 137 (256)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 23478999999886532 1 1121 234555644 344445555542 46788887753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.016 Score=54.22 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~ 74 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL-----GVVI----ADLAAEKGKALADEL 74 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHh
Confidence 45789999999999999999999875 2443 377777777666665
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=61.35 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC-----cCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc---ceEEEecCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGE-----VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGINP 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~-----~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~---~~v~i~~~~ 166 (398)
+|+||+|+||+|.+|..++..|...+ . +.+.++....+..+ . +.+.. +.+ .++.+..-+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~------~ei~~l~s~~~agk----~--~~~~~-~~l~~~~~~~~~~~~ 74 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGR------LRIGALTAATSAGS----T--LGEHH-PHLTPLAHRVVEPTE 74 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTS------EEEEEEEESSCTTS----B--GGGTC-TTCGGGTTCBCEECC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCcc------EEEEEEECCCcCCC----c--hhhhc-ccccccceeeeccCC
Confidence 46799999999999999999998765 3 22322211122111 0 11110 111 122222223
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.++++++|+||++.|.. .-+++++.+ + .++++|..|.|.
T Consensus 75 ~~~~~~~DvVf~alg~~----------------~s~~~~~~~-~---~G~~vIDlSa~~ 113 (352)
T 2nqt_A 75 AAVLGGHDAVFLALPHG----------------HSAVLAQQL-S---PETLIIDCGADF 113 (352)
T ss_dssp HHHHTTCSEEEECCTTS----------------CCHHHHHHS-C---TTSEEEECSSTT
T ss_pred HHHhcCCCEEEECCCCc----------------chHHHHHHH-h---CCCEEEEECCCc
Confidence 56688999999986532 133455555 3 357888899885
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.06 Score=51.58 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc----------chhhHHHHHHHHhhhcCCCcceEEE-ec
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER----------SLQALEGVAMELEDSLFPLLREVKI-GI 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~----------~~~~l~g~a~DL~d~~~~~~~~v~i-~~ 164 (398)
.+++.|+||+|.||.+++..|+..|. .+.+ .|.+. +.+.++..+.++.... .++.. ..
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~-----~Vv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 114 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGA-----DIVA--IDLCRQQPNLDYAQGSPEELKETVRLVEEQG----RRIIARQA 114 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--EECCCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEEC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----eEEE--EecccccccccccccCHHHHHHHHHHHHhcC----CeEEEEEC
Confidence 35788999999999999999999875 2433 22221 2455555555544322 11111 11
Q ss_pred C--cc-----------cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEE
Q 015897 165 N--PY-----------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVV 221 (398)
Q Consensus 165 ~--~~-----------eal~dADiViitag~~rk-~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvv 221 (398)
| +. +.+...|++|..+|.... + ..+.. ..+..|+ .+.+.+.+.+.+. ..++.||++
T Consensus 115 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~g~Iv~i 193 (317)
T 3oec_A 115 DVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER-GQGGSVIFV 193 (317)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-CSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 1 11 223478999999886532 1 12222 3355554 3555666666664 357888888
Q ss_pred CCCc
Q 015897 222 GNPC 225 (398)
Q Consensus 222 tNP~ 225 (398)
+--.
T Consensus 194 sS~~ 197 (317)
T 3oec_A 194 SSTV 197 (317)
T ss_dssp CCGG
T ss_pred CcHH
Confidence 7543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.11 Score=47.57 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCc-eEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc-c-
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP-IALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY-E- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~-i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~-e- 168 (398)
+.++|.|+||+|.+|.+++..|+..|. . +.+ . +++.+. ....++.+.. + ..++.. ..| +. +
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~-----~~v~~--~--~r~~~~--~~~~~l~~~~-~-~~~~~~~~~D~~~~~~~ 70 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNL-----KNFVI--L--DRVENP--TALAELKAIN-P-KVNITFHTYDVTVPVAE 70 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-----SEEEE--E--ESSCCH--HHHHHHHHHC-T-TSEEEEEECCTTSCHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----cEEEE--E--ecCchH--HHHHHHHHhC-C-CceEEEEEEecCCChHH
Confidence 346899999999999999999999874 2 333 2 444321 1122333221 1 112221 111 11 1
Q ss_pred ----------ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHH----HHHHHHHHHHhc-CCCeEEEEECCC
Q 015897 169 ----------LFEDAEWALLIGAKPRGPGMERAGLLDINGQI----FAEQGKALNAVA-SRNVKVIVVGNP 224 (398)
Q Consensus 169 ----------al~dADiViitag~~rk~g~~r~dll~~N~~i----~~~i~~~i~~~a-~p~a~vIvvtNP 224 (398)
.+...|++|..+|... ..+-...+..|..- .+.+.+.+.+.. .+.+.||+++--
T Consensus 71 ~~~~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~ 139 (254)
T 1sby_A 71 SKKLLKKIFDQLKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV 139 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence 1237899999988642 12233445556443 444444443321 125788888754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.05 Score=50.68 Aligned_cols=118 Identities=10% Similarity=0.026 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+ ..+.+.++..+.++.+.. . ++. +..| +.+
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~--~~-~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 85 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGA-----KVVV--NY-ANSTKDAEKVVSEIKALG-S---DAIAIKADIRQVPEIVK 85 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTC-----EEEE--EE-SSCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--Ec-CCCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 35889999999999999999999875 2443 21 234556666666665432 1 111 1111 222
Q ss_pred -------ccCCCcEEEEeCCCCCC-C--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 -------al~dADiViitag~~rk-~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+...|++|..+|.... + ..+. ...+..|..-...+.+.+..+-..++.||+++--.
T Consensus 86 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 155 (270)
T 3is3_A 86 LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT 155 (270)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence 22367999999887532 2 1122 23466676555555555554433467777776543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.025 Score=56.31 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc----CCCc-ceEEEecCccc-
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLL-REVKIGINPYE- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~----~~~~-~~v~i~~~~~e- 168 (398)
+++||+|+||+|.+|..+...|...+.+ +|. .|+...++..+. ..|.-... .+.. .+..+..-+.+
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~----el~-~l~aS~~saGk~---~~~~~~~~~~~~~p~~~~~~~v~~~~~~~ 89 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHPEF----EIH-ALGASSRSAGKK---YKDAASWKQTETLPETEQDIVVQECKPEG 89 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSE----EEE-EEEECTTTTTSB---HHHHCCCCCSSCCCHHHHTCBCEESSSCT
T ss_pred CccEEEEECCCChHHHHHHHHHHcCCCc----eEE-EeeccccccCCC---HHHhcccccccccccccccceEEeCchhh
Confidence 3579999999999999999988776532 132 122222221111 11111000 0000 12222222233
Q ss_pred ccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+++++|+||++.+ ...-+++++.+.+ .+++||-.|.+
T Consensus 90 ~~~~~Dvvf~alp----------------~~~s~~~~~~~~~---~G~~VIDlSa~ 126 (381)
T 3hsk_A 90 NFLECDVVFSGLD----------------ADVAGDIEKSFVE---AGLAVVSNAKN 126 (381)
T ss_dssp TGGGCSEEEECCC----------------HHHHHHHHHHHHH---TTCEEEECCST
T ss_pred hcccCCEEEECCC----------------hhHHHHHHHHHHh---CCCEEEEcCCc
Confidence 6889999999865 2345566665544 36777766644
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=95.81 E-value=0.065 Score=50.29 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~ 150 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++. +.++..+.++.
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~l~ 69 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGY-----RVVI----HYHNSAEAAVSLADELN 69 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----eEEE----EeCCchHHHHHHHHHHH
Confidence 35899999999999999999999874 2443 35665 66666666664
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.011 Score=54.90 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=53.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhc--CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEecCcccccCCCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAE 174 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~--~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dAD 174 (398)
||.|+||+|++|++++..|+.. +. .|.. .+++.+.+... .+..... ..++.-.....++++++|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~d 67 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-----QIVA----IVRNPAKAQAL----AAQGITVRQADYGDEAALTSALQGVE 67 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-----GEEE----EESCTTTCHHH----HHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-----eEEE----EEcChHhhhhh----hcCCCeEEEcCCCCHHHHHHHHhCCC
Confidence 5899999999999999999886 53 2443 24544443321 1111000 001000011246788999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+||.+++... ..|....+.+.+.+.+. +. ..+|.+|
T Consensus 68 ~vi~~a~~~~----------~~~~~~~~~l~~a~~~~-~~-~~~v~~S 103 (286)
T 2zcu_A 68 KLLLISSSEV----------GQRAPQHRNVINAAKAA-GV-KFIAYTS 103 (286)
T ss_dssp EEEECC------------------CHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred EEEEeCCCCc----------hHHHHHHHHHHHHHHHc-CC-CEEEEEC
Confidence 9999887531 13555666777777764 32 3455444
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0086 Score=57.28 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCC--CCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--c---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~--~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~--- 166 (398)
++++|.|+||+|+||++++..|+..|.... ...|.+ + +++.+.... . . ...+.. ..| +
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~--~--~r~~~~~~~----~---~---~~~~~~~~~Dl~d~~~ 78 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTL--I--DVFQPEAPA----G---F---SGAVDARAADLSAPGE 78 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEE--E--ESSCCCCCT----T---C---CSEEEEEECCTTSTTH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEE--E--EccCCcccc----c---c---CCceeEEEcCCCCHHH
Confidence 457999999999999999999998772000 002332 2 443221110 0 0 011211 111 1
Q ss_pred -cccc-CCCcEEEEeCCCCCCC-CCchhhhHHHHHHHHHHHHHHHHHhcC----CCeEEEEEC
Q 015897 167 -YELF-EDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVAS----RNVKVIVVG 222 (398)
Q Consensus 167 -~eal-~dADiViitag~~rk~-g~~r~dll~~N~~i~~~i~~~i~~~a~----p~a~vIvvt 222 (398)
.+++ .+.|+||.+++..... ..+..+.+..|+.-...+.+.+.+. . +.+.+|++|
T Consensus 79 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~-~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 79 AEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIA-NGKDGYKPRVVFTS 140 (342)
T ss_dssp HHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEE
T ss_pred HHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhc-ccccCCCcEEEEeC
Confidence 2344 4899999998854210 0123345677777777777777764 2 135566655
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.011 Score=55.87 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cc----c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++. .++.. ..| +. +
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~-------~~~~~~~~Dl~d~~~v~~ 79 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGA-----TVIM----AVRDTRKGEAAARTMA-------GQVEVRELDLQDLSSVRR 79 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHTTSS-------SEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhc-------CCeeEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 2443 3677777665544431 11211 111 12 1
Q ss_pred c---cCCCcEEEEeCCCCCCC-CCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 L---FEDAEWALLIGAKPRGP-GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 a---l~dADiViitag~~rk~-g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
. +...|++|..+|....+ ..+ -...+..|..-...+.+.+...- ...||+++--
T Consensus 80 ~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~--~~riv~isS~ 140 (291)
T 3rd5_A 80 FADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL--TDRVVTVSSM 140 (291)
T ss_dssp HHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE--EEEEEEECCG
T ss_pred HHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HhheeEeech
Confidence 2 23669999998864321 111 23457778777777777777652 3467777654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=95.74 E-value=0.058 Score=50.50 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . .++.+ ..| +.+
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dl~d~~~v~~ 95 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCLELG-A--ASAHYIAGTMEDMTFAEQ 95 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHT-C--SEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhC-C--CceEEEeCCCCCHHHHHH
Confidence 46899999999999999999999874 2443 3677777776665554322 1 01111 111 111
Q ss_pred -------ccCCCcEEEEe-CCCCCCCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 -------LFEDAEWALLI-GAKPRGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 -------al~dADiViit-ag~~rk~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.+.|++|.. +|....+- .+. ...+..|.. +.+...+.+.+. .+.||+++-
T Consensus 96 ~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---~g~iv~isS 164 (286)
T 1xu9_A 96 FVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSS 164 (286)
T ss_dssp HHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC---CCEEEEECC
Confidence 12378999998 66543221 121 233555543 344444444442 356666654
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=57.51 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~-~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (398)
|+||+|+||+|.+|..++. .|...+. . .+.++++-.+ +.. . .+.+.. . .++.+. .++.+.++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~-~---~v~i~~~~~~-s~G----~--~v~~~~-g--~~i~~~~~~~~~~~~~~ 66 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDF-D---AIRPVFFSTS-QLG----Q--AAPSFG-G--TTGTLQDAFDLEALKAL 66 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG-G---GSEEEEEESS-STT----S--BCCGGG-T--CCCBCEETTCHHHHHTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCC-C---eEEEEEEEeC-CCC----C--CccccC-C--CceEEEecCChHHhcCC
Confidence 5799999999999999999 4544432 1 1455544333 211 1 111000 0 122222 2234557899
Q ss_pred cEEEEeCC
Q 015897 174 EWALLIGA 181 (398)
Q Consensus 174 DiViitag 181 (398)
|+||.+.|
T Consensus 67 DvVf~a~g 74 (367)
T 1t4b_A 67 DIIVTCQG 74 (367)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999765
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.013 Score=56.49 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
+.++|+||| +|.+|..++..|+.. +. . .|.+ + |++.++++..+.++.. ++....+..+++++|
T Consensus 134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~-~---~V~v--~--dr~~~~~~~l~~~~~~-------~~~~~~~~~e~v~~a 197 (312)
T 2i99_A 134 SSEVLCILG-AGVQAYSHYEIFTEQFSF-K---EVRI--W--NRTKENAEKFADTVQG-------EVRVCSSVQEAVAGA 197 (312)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHCCC-S---EEEE--E--CSSHHHHHHHHHHSSS-------CCEECSSHHHHHTTC
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCC-c---EEEE--E--cCCHHHHHHHHHHhhC-------CeEEeCCHHHHHhcC
Confidence 467999999 599999999988765 43 1 2443 3 6777777766554321 233445667888999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++.
T Consensus 198 DiVi~at 204 (312)
T 2i99_A 198 DVIITVT 204 (312)
T ss_dssp SEEEECC
T ss_pred CEEEEEe
Confidence 9999874
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.035 Score=52.30 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=67.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh-------hHHHHHHHHhhhcCCCcceEEE-e
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-------ALEGVAMELEDSLFPLLREVKI-G 163 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~-------~l~g~a~DL~d~~~~~~~~v~i-~ 163 (398)
|..+.+++.|+||+|.||.+++..|+..|. .|.+ . +++.+ .++..+.++.... . ++.. .
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 71 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-----NVAL--V--AKSAEPHPKLPGTIYTAAKEIEEAG-G---QALPIV 71 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-----EEEE--E--ESCCSCCSSSCCCHHHHHHHHHHHT-S---EEEEEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--ECChhhhhhhhHHHHHHHHHHHhcC-C---cEEEEE
Confidence 333456899999999999999999999875 2443 2 44443 3555555555432 1 1111 1
Q ss_pred cC--cc-----------cccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEC
Q 015897 164 IN--PY-----------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQIFAEQGKALNAVA--SRNVKVIVVG 222 (398)
Q Consensus 164 ~~--~~-----------eal~dADiViitag~~r-k~--g~~r---~dll~~N~~i~~~i~~~i~~~a--~p~a~vIvvt 222 (398)
.| +. +.+...|++|..+|... .+ ..+. ...+..|..-...+.+.+...- ...+.||+++
T Consensus 72 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~is 151 (285)
T 3sc4_A 72 GDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLS 151 (285)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 11 11 22347899999988653 21 1222 2345566554444444443321 2467888887
Q ss_pred CC
Q 015897 223 NP 224 (398)
Q Consensus 223 NP 224 (398)
-.
T Consensus 152 S~ 153 (285)
T 3sc4_A 152 PP 153 (285)
T ss_dssp CC
T ss_pred Ch
Confidence 53
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.033 Score=51.64 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=65.0
Q ss_pred CEEEEEcCC--CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc-------
Q 015897 97 VNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------- 167 (398)
Q Consensus 97 ~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------- 167 (398)
++|.|+||+ |.||.+++..|+..|. .|.+ . +++. .++....++.+.. +...-+..-..+.
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~--~--~r~~-~~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGA-----ELAF--T--YQND-KLKGRVEEFAAQL-GSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTC-----EEEE--E--ESST-TTHHHHHHHHHHT-TCCCEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC-----EEEE--E--cCcH-HHHHHHHHHHHhc-CCcEEEEccCCCHHHHHHHH
Confidence 579999998 8999999999999874 2443 2 4544 2333334443221 1100011000111
Q ss_pred ----cccCCCcEEEEeCCCCCC-----C--C-Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ----ELFEDAEWALLIGAKPRG-----P--G-MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 ----eal~dADiViitag~~rk-----~--g-~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.... + . .+. ...+..|..-...+.+.+.+.-.+++.||+++-
T Consensus 79 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 149 (265)
T 1qsg_A 79 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY 149 (265)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence 122367999999886532 1 0 221 235667776666666666654223477888774
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.068 Score=49.91 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh-------hHHHHHHHHhhhcCCCcceEE-EecC-
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-------ALEGVAMELEDSLFPLLREVK-IGIN- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~-------~l~g~a~DL~d~~~~~~~~v~-i~~~- 165 (398)
+.+++.|+||+|.||.+++..|+..|. .|.+ . +++.+ .++..+.++.... . ++. +..|
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv 71 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-----NVAI--A--AKSAVANPKLPGTIHSAAAAVNAAG-G---QGLALKCDI 71 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCCSCCTTSCCCHHHHHHHHHHHT-S---EEEEEECCT
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--eccchhhhhhHHHHHHHHHHHHhcC-C---eEEEEeCCC
Confidence 346899999999999999999999875 2443 2 44433 2444555544322 1 111 1111
Q ss_pred -cc-----------cccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 -PY-----------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 -~~-----------eal~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+. +.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+ ...+.||+++-
T Consensus 72 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~~~g~iv~isS 149 (274)
T 3e03_A 72 REEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQ--APNPHILTLAP 149 (274)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--SSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHh--cCCceEEEECC
Confidence 11 22347899999998753221 121 123445543 45555555655 35688888876
Q ss_pred Cch
Q 015897 224 PCN 226 (398)
Q Consensus 224 P~d 226 (398)
...
T Consensus 150 ~~~ 152 (274)
T 3e03_A 150 PPS 152 (274)
T ss_dssp CCC
T ss_pred hHh
Confidence 543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0058 Score=58.02 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|+||.|+||+|++|++++..|+..+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSH 29 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCC
Confidence 56899999999999999999998873
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.03 Score=51.23 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--cccc---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYEL--- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~ea--- 169 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ . .+++.+.++....++.... . ++. +..| +.+.
T Consensus 7 ~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~--~-~~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~ 74 (255)
T 3icc_A 7 GKVALVTGASRGIGRAIAKRLANDGA-----LVAI--H-YGNRKEEAEETVYEIQSNG-G---SAFSIGANLESLHGVEA 74 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--E-ESSCSHHHHHHHHHHHHTT-C---EEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE--E-eCCchHHHHHHHHHHHhcC-C---ceEEEecCcCCHHHHHH
Confidence 46899999999999999999999875 2433 1 1455566666666665432 1 111 1111 1111
Q ss_pred -c-------------CCCcEEEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 170 -F-------------EDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 170 -l-------------~dADiViitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+ ...|++|..+|...... .+. ...+..|..-...+.+.+...-.+++.||+++-..
T Consensus 75 ~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~ 150 (255)
T 3icc_A 75 LYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 150 (255)
T ss_dssp HHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred HHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence 1 12899999988642211 121 23455665555555555544322467888887643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.1 Score=52.34 Aligned_cols=138 Identities=11% Similarity=-0.003 Sum_probs=81.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-c-----ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-----YEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-~-----~ea 169 (398)
.++|.|+|+ |.+|..++..|...+. ++.+ +|.++++++... + ... .+..+.. + ...
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~-----~vvv----Id~d~~~v~~~~-~---~g~----~vi~GDat~~~~L~~ag 65 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV-----KMVV----LDHDPDHIETLR-K---FGM----KVFYGDATRMDLLESAG 65 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EECCHHHHHHHH-H---TTC----CCEESCTTCHHHHHHTT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHH-h---CCC----eEEEcCCCCHHHHHhcC
Confidence 458999995 9999999999998875 3544 477777765332 1 111 1222211 1 223
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEecCc
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~gt~ 249 (398)
+.+||+||++.+. -..-..++..+++. +|+..||.-++--+ ....+ +.. |.+ .+| .-+.
T Consensus 66 i~~A~~viv~~~~---------------~~~n~~i~~~ar~~-~p~~~Iiara~~~~-~~~~L-~~~-Gad-~Vi-~~~~ 124 (413)
T 3l9w_A 66 AAKAEVLINAIDD---------------PQTNLQLTEMVKEH-FPHLQIIARARDVD-HYIRL-RQA-GVE-KPE-RETF 124 (413)
T ss_dssp TTTCSEEEECCSS---------------HHHHHHHHHHHHHH-CTTCEEEEEESSHH-HHHHH-HHT-TCS-SCE-ETTH
T ss_pred CCccCEEEECCCC---------------hHHHHHHHHHHHHh-CCCCeEEEEECCHH-HHHHH-HHC-CCC-EEE-CccH
Confidence 7899999998542 12333445555666 68866666554322 22233 334 443 343 2333
Q ss_pred hhHHHHHHHHHHHcCcCcCceee
Q 015897 250 LDENRAKCQLALKAGVFYDKVSN 272 (398)
Q Consensus 250 lDs~Rl~~~lA~~lgv~~~~V~~ 272 (398)
.-+.++-..+-..+|++++.+..
T Consensus 125 ~~a~~la~~~L~~lg~~~~~~~~ 147 (413)
T 3l9w_A 125 EGALKTGRLALESLGLGPYEARE 147 (413)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 33566777777788888877654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.017 Score=54.07 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc-------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++++.++....++.... .+ ...+ .+.+
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~--~~Dv--~d~~~v~~~~~ 74 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGA-----RVVI----CDKDESGGRALEQELPGAV-FI--LCDV--TQEDDVKTLVS 74 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCTTEE-EE--ECCT--TSHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcCCe-EE--EcCC--CCHHHHHHHHH
Confidence 35899999999999999999999874 2443 3677666665554443211 00 0011 1121
Q ss_pred ----ccCCCcEEEEeCCCCCCCC----Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 ----LFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 ----al~dADiViitag~~rk~g----~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|.....+ .+. ...+..|.. +.+...+.+.+. .+.||+++-
T Consensus 75 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS 141 (270)
T 1yde_A 75 ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISS 141 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC---CCEEEEEcC
Confidence 2337899999988643211 121 234555544 344444444442 467777774
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0043 Score=54.91 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
+|||.|+||+|.+|.+++..|+ .|. .+.+ . +++.+. ...|+.+.. .+ ....+.+...|+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~-----~V~~--~--~r~~~~---~~~D~~~~~-----~~---~~~~~~~~~~d~ 61 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKA-----EVIT--A--GRHSGD---VTVDITNID-----SI---KKMYEQVGKVDA 61 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTS-----EEEE--E--ESSSSS---EECCTTCHH-----HH---HHHHHHHCCEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCC-----eEEE--E--ecCccc---eeeecCCHH-----HH---HHHHHHhCCCCE
Confidence 4589999999999999999998 763 2433 2 343220 011111110 00 000111235799
Q ss_pred EEEeCCCCCCCC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~rk~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
||.++|...... .+. .+.+..|..-...+.+.+.+....++.+|+++-.
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~ 116 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGI 116 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCG
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcch
Confidence 999988643211 122 2345566666666666555532124677777643
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.021 Score=54.87 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch----hhHHHHHHHHhhhcCCC-cceEEEecCccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL----QALEGVAMELEDSLFPL-LREVKIGINPYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~----~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal 170 (398)
++||.|+||+|++|++++..|+..+. +|.+ + +++. +++. ...++....... ..++.-.....+++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-----~V~~--l--~R~~~~~~~~~~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-----PTYI--L--ARPGPRSPSKAK-IFKALEDKGAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-----CEEE--E--ECSSCCCHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-----CEEE--E--ECCCCCChhHHH-HHHHHHhCCcEEEEeecCCHHHHHHHH
Confidence 46899999999999999999998873 2433 2 3332 3332 222332211000 00000001123566
Q ss_pred C--CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 171 E--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 171 ~--dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+ ++|+||.+++.. |......+.+.+.+.
T Consensus 80 ~~~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~ 109 (346)
T 3i6i_A 80 KEHEIDIVVSTVGGE-------------SILDQIALVKAMKAV 109 (346)
T ss_dssp HHTTCCEEEECCCGG-------------GGGGHHHHHHHHHHH
T ss_pred hhCCCCEEEECCchh-------------hHHHHHHHHHHHHHc
Confidence 7 999999998752 444456666777764
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0033 Score=59.19 Aligned_cols=108 Identities=19% Similarity=0.064 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc--CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccC-
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFE- 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~--~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~- 171 (398)
+||.|+||+|++|++++..|+.. +. .|.+ + +++....+ +.... .+ ....+. ....++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~--~--~r~~~~~~-----~~~~~-~~-~~~D~~d~~~~~~~~~~ 66 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-----NVIA--S--DIRKLNTD-----VVNSG-PF-EVVNALDFNQIEHLVEV 66 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-----GEEE--E--ESCCCSCH-----HHHSS-CE-EECCTTCHHHHHHHHHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-----EEEE--E--cCCCcccc-----ccCCC-ce-EEecCCCHHHHHHHHhh
Confidence 58999999999999999999886 53 2433 2 33322211 11101 00 000010 01124455
Q ss_pred -CCcEEEEeCCCCCCCC-CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 -DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 -dADiViitag~~rk~g-~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++|+||.+++...... .+..+....|+.-...+.+.+.+. + -..+|.+|
T Consensus 67 ~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~S 117 (312)
T 2yy7_A 67 HKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-K-IKKIFWPS 117 (312)
T ss_dssp TTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-S-CSEEECCE
T ss_pred cCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 8999999987542111 233456788888888888888774 2 23555554
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.056 Score=49.45 Aligned_cols=112 Identities=10% Similarity=0.038 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc-------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------E 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------e 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++... ++.... -+..-..+. +
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~-~~~~~~-----~~~~D~~~~~~~~~~~~ 70 (246)
T 2ag5_A 6 GKVIILTAAAQGIGQAAALAFAREGA-----KVIA----TDINESKLQELE-KYPGIQ-----TRVLDVTKKKQIDQFAN 70 (246)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHGGGG-GSTTEE-----EEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHH-hccCce-----EEEeeCCCHHHHHHHHH
Confidence 35899999999999999999999874 2443 366665554332 221110 000000112 2
Q ss_pred ccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|...... .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 71 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 134 (246)
T 2ag5_A 71 EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSV 134 (246)
T ss_dssp HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEech
Confidence 3567899999988653211 1211 23445543 455555556553 46788887754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0024 Score=59.02 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC--Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--AD 174 (398)
|||.|+||+|++|++++..|+. +. .|.+ .+++.+...+...|+.+ .....+++++ .|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~-----~V~~----~~r~~~~~~~~~~Dl~~-----------~~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH-----EVIK----VYNSSEIQGGYKLDLTD-----------FPRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS-----CEEE----EESSSCCTTCEECCTTS-----------HHHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC-----eEEE----ecCCCcCCCCceeccCC-----------HHHHHHHHHhcCCC
Confidence 4799999999999999999984 42 2443 23433210000000000 0011233444 89
Q ss_pred EEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||.++|..... ..+..+.+..|..-...+.+.+.+. ++.+|++|-
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~iv~~SS 107 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI---DSYIVHIST 107 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEec
Confidence 999998864311 1133456778888888888888774 246666663
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.018 Score=53.59 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------Cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++++.+.....+.. .. . ....++. ..
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~-~~--~-~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGH-----RVII----SYRTEHASVTELRQAG-AV--A-LYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTC-----CEEE----EESSCCHHHHHHHHHT-CE--E-EECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHhcC-Ce--E-EECCCCCHHHHHHHHHHH
Confidence 45799999999999999999999875 2544 2555555432322221 00 0 0001110 01
Q ss_pred ccccCCCcEEEEeCCCCCCC--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPRGP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+...|++|..+|..... ..+.. ..+..|.. +.+...+.+.+ ...+.||+++-.
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~--~~~g~iv~isS~ 158 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTA--SEVADIVHISDD 158 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT--SSSCEEEEECCG
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEECCh
Confidence 12334789999998865322 22222 24555533 45555555555 345788888753
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.029 Score=55.17 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=43.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|+||+|.+|..+...|.... |. .+.+.++....+. |....+. ..+..+..-+.+++.++|+|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~-fp---~~el~~~~s~~~a----G~~~~~~------~~~~~~~~~~~~~~~~~Dvv 67 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERD-FP---ASAVRFFASARSQ----GRKLAFR------GQEIEVEDAETADPSGLDIA 67 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-CC---EEEEEEEECTTTS----SCEEEET------TEEEEEEETTTSCCTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CC---ceEEEEEECcccC----CCceeec------CCceEEEeCCHHHhccCCEE
Confidence 689999999999999999888774 22 1344444222211 1111111 12333433345678999999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
|++.+
T Consensus 68 f~a~~ 72 (344)
T 3tz6_A 68 LFSAG 72 (344)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 99765
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.032 Score=54.89 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=52.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
.+..+|+|||+ |.+|...+..|+.. +. . .|.+ .|++.++++..+.++.... ...+....+..+++++
T Consensus 127 ~~~~~v~iIGa-G~~a~~~a~al~~~~~~-~---~V~V----~~r~~~~a~~la~~~~~~~---g~~~~~~~~~~eav~~ 194 (350)
T 1x7d_A 127 PNARKMALIGN-GAQSEFQALAFHKHLGI-E---EIVA----YDTDPLATAKLIANLKEYS---GLTIRRASSVAEAVKG 194 (350)
T ss_dssp TTCCEEEEECC-STTHHHHHHHHHHHSCC-C---EEEE----ECSSHHHHHHHHHHHTTCT---TCEEEECSSHHHHHTT
T ss_pred ccCCeEEEECC-cHHHHHHHHHHHHhCCC-c---EEEE----EcCCHHHHHHHHHHHHhcc---CceEEEeCCHHHHHhc
Confidence 34679999995 99999998877643 32 2 2443 3788888888877765310 1134455566788999
Q ss_pred CcEEEEeC
Q 015897 173 AEWALLIG 180 (398)
Q Consensus 173 ADiViita 180 (398)
||+||++-
T Consensus 195 aDiVi~aT 202 (350)
T 1x7d_A 195 VDIITTVT 202 (350)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 99999864
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.019 Score=54.21 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+|||+ |.+|..++..|...+. .|.+ .|++.++++..+.++ .+.+..+..+.++++|+
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~g~-----~V~v----~~r~~~~~~~l~~~~---------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKEGA-----KVFL----WNRTKEKAIKLAQKF---------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHHTC-----EEEE----ECSSHHHHHHHTTTS---------CEEECSCGGGTGGGCSE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHc---------CCeeehhHHhhhcCCCE
Confidence 469999995 9999999999998774 2543 367766655433221 13333456678899999
Q ss_pred EEEeCCCC
Q 015897 176 ALLIGAKP 183 (398)
Q Consensus 176 Viitag~~ 183 (398)
||.+...+
T Consensus 190 Vi~atp~~ 197 (275)
T 2hk9_A 190 IVNTTSVG 197 (275)
T ss_dssp EEECSSTT
T ss_pred EEEeCCCC
Confidence 99986543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.018 Score=53.33 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=42.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|.+|..++..|+..+. +|.+ +|.+.+++.++. +.+. . +. .+..+.++++|+|
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g~-----~V~~--~~~~~~~~~~~~----~~~~--g----~~--~~~~~~~~~aDvv 60 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRGV-----EVVT--SLEGRSPSTIER----ARTV--G----VT--ETSEEDVYSCPVV 60 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-----EEEE--CCTTCCHHHHHH----HHHH--T----CE--ECCHHHHHTSSEE
T ss_pred CeEEEEe-chHHHHHHHHHHHHCCC-----eEEE--eCCccCHHHHHH----HHHC--C----Cc--CCHHHHHhcCCEE
Confidence 5899999 59999999999998764 3443 332214444432 2221 1 11 4556778999999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
|++..
T Consensus 61 i~~v~ 65 (264)
T 1i36_A 61 ISAVT 65 (264)
T ss_dssp EECSC
T ss_pred EEECC
Confidence 99853
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.078 Score=48.80 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (398)
++++.|+||+|.+|.+++..|+..|. .+.+ .+ ..+.+.++.....+.... .++.+ ..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~v~~--~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~ 74 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGY-----SVTV--TY-HSDTTAMETMKETYKDVE----ERLQFVQADVTKKEDLHK 74 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--EE-SSCHHHHHHHHHHTGGGG----GGEEEEECCTTSHHHHHH
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCC-----EEEE--Ec-CCChHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 56899999999999999999999875 2443 21 233344443333332211 12221 111 221
Q ss_pred -------ccCCCcEEEEeCCC--C-CCCC--Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 -------LFEDAEWALLIGAK--P-RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 -------al~dADiViitag~--~-rk~g--~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|. . ..+- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 75 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~iss~ 147 (264)
T 3i4f_A 75 IVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ--NFGRIINYGFQ 147 (264)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc--CCCeEEEEeec
Confidence 22378999999883 2 1221 122 233555543 455555555664 46778877643
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0029 Score=61.06 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccch--hhHHHHHHHHhhhcCCCcceEEE-ecC--c----
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKI-GIN--P---- 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~--~~l~g~a~DL~d~~~~~~~~v~i-~~~--~---- 166 (398)
|||.|+||+|+||++++..|+.. +. .|.+ + +++. +.++. ..++.. ...+.. ..| +
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~-----~V~~--~--~r~~~~~~~~~-~~~~~~-----~~~~~~~~~Dl~d~~~~ 65 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD-----TVVN--I--DKLTYAGNLES-LSDISE-----SNRYNFEHADICDSAEI 65 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-----EEEE--E--ECCCTTCCGGG-GTTTTT-----CTTEEEEECCTTCHHHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC-----eEEE--E--ecCCCCCchhh-hhhhhc-----CCCeEEEECCCCCHHHH
Confidence 48999999999999999999986 43 2332 2 3321 11111 111111 011221 111 2
Q ss_pred ccccC--CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHh--cCC-----CeEEEEEC
Q 015897 167 YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV--ASR-----NVKVIVVG 222 (398)
Q Consensus 167 ~eal~--dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~--a~p-----~a~vIvvt 222 (398)
.++++ ++|+||.+++..... ..+..+++..|+.-...+.+.+.+. ..+ ++.+|++|
T Consensus 66 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~S 132 (361)
T 1kew_A 66 TRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIS 132 (361)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEE
T ss_pred HHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeC
Confidence 23455 899999998864310 0122346777877777777777664 111 24676666
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.13 Score=47.15 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC---cccccC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYELFE 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---~~eal~ 171 (398)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++++.++ ++.... .. .++ ..+ -.+.+.
T Consensus 18 ~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~----~~~~~~-~~-~D~--~~~~~~~~~~~~ 80 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGRAVADVLSQEGA-----EVTI----CARNEELLK----RSGHRY-VV-CDL--RKDLDLLFEKVK 80 (249)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH----HTCSEE-EE-CCT--TTCHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHH----hhCCeE-EE-eeH--HHHHHHHHHHhc
Confidence 356899999999999999999999874 2443 356553322 221100 00 111 001 112334
Q ss_pred CCcEEEEeCCCCCCCC---Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 172 DAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 172 dADiViitag~~rk~g---~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.|++|..+|...... .+. ...+..|. .+.+.+.+.+.+. ..+.||+++--
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 141 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSF 141 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcch
Confidence 7899999988653211 111 22344453 3455666667664 45788887753
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.0024 Score=57.79 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
..+||+||| +|.+|..++..|...+. .|.+ .|++.+ .+. +... .+... +..++++++|
T Consensus 18 ~~~~I~iIG-~G~mG~~la~~L~~~G~-----~V~~----~~r~~~-~~~----~~~~------g~~~~-~~~~~~~~aD 75 (201)
T 2yjz_A 18 KQGVVCIFG-TGDFGKSLGLKMLQCGY-----SVVF----GSRNPQ-VSS----LLPR------GAEVL-CYSEAASRSD 75 (201)
Confidence 346899999 59999999999987763 2433 355543 221 1110 12223 5667889999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+||++.... . +.++. .+... .++.+||.++|...
T Consensus 76 vVilav~~~----~------------~~~v~-~l~~~-~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 76 VIVLAVHRE----H------------YDFLA-ELADS-LKGRVLIDVSNNQK 109 (201)
Confidence 999875311 1 11111 12222 35778888998864
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.036 Score=51.33 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc----c
Q 015897 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L 169 (398)
Q Consensus 96 ~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----a 169 (398)
.+++.|+||+ |.+|.+++..|+..|. .|.+ . +++++ ++....++.+.. +...-+..-..+.+ .
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~-~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA-----EVAL--S--YQAER-LRPEAEKLAEAL-GGALLFRADVTQDEELDAL 76 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTC-----EEEE--E--ESCGG-GHHHHHHHHHHT-TCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEE--E--cCCHH-HHHHHHHHHHhc-CCcEEEECCCCCHHHHHHH
Confidence 4589999998 8999999999999874 2443 2 45543 222333443221 11000110011221 1
Q ss_pred -------cCCCcEEEEeCCCCCC-----C--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 -------FEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 -------l~dADiViitag~~rk-----~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+...|++|..+|.... + ..+. ...+..|..-...+.+.+.+....++.||+++-
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 147 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 2367999999886531 1 1122 234666766666666665543212467887774
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.045 Score=50.41 Aligned_cols=120 Identities=11% Similarity=-0.024 Sum_probs=64.3
Q ss_pred cCCCEEEEEcCC--CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc----
Q 015897 94 KKMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY---- 167 (398)
Q Consensus 94 ~~~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~---- 167 (398)
.+.++|.|+||+ |.+|.+++..|+..|. .|.+ . +++.... ....++.... +...-+..-..+.
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~-~~~~~~~~~~-~~~~~~~~Dv~~~~~v~ 80 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-----ELAF--T--YVGDRFK-DRITEFAAEF-GSELVFPCDVADDAQID 80 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-----EEEE--E--ESSGGGH-HHHHHHHHHT-TCCCEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-----CEEE--E--ecchhhH-HHHHHHHHHc-CCcEEEECCCCCHHHHH
Confidence 345799999998 9999999999999875 2443 2 3442222 2223332211 1100011000111
Q ss_pred -------cccCCCcEEEEeCCCCCC-----CC---Cch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -------ELFEDAEWALLIGAKPRG-----PG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -------eal~dADiViitag~~rk-----~g---~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+..-|++|..+|.... +- .+. ...+..|..-...+.+.+.....+++.||+++--
T Consensus 81 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 155 (271)
T 3ek2_A 81 ALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYL 155 (271)
T ss_dssp HHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred HHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecc
Confidence 222367999999886431 11 222 2345666555555666555442246777777643
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.079 Score=48.86 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--ccc----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . ++. +..| +.+
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 71 (260)
T 2qq5_A 5 GQVCVVTGASRGIGRGIALQLCKAGA-----TVYI----TGRHLDTLRVVAQEAQSLG-G---QCVPVVCDSSQESEVRS 71 (260)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHS-S---EEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHcC-C---ceEEEECCCCCHHHHHH
Confidence 35789999999999999999999874 2443 3677777776666665321 1 111 1111 111
Q ss_pred c--------cCCCcEEEEeCC--CC------CCC--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 L--------FEDAEWALLIGA--KP------RGP--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 a--------l~dADiViitag--~~------rk~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
. +..-|++|..+| .. ..+ ..+.. ..+..| ..+.+...+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 149 (260)
T 2qq5_A 72 LFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPA--GQGLIVVISS 149 (260)
T ss_dssp HHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGG--TCCEEEEECC
T ss_pred HHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhc--CCcEEEEEcC
Confidence 1 446799999884 21 122 11211 223333 33445556666553 4578888875
Q ss_pred Cc
Q 015897 224 PC 225 (398)
Q Consensus 224 P~ 225 (398)
..
T Consensus 150 ~~ 151 (260)
T 2qq5_A 150 PG 151 (260)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0068 Score=57.56 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=43.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh-hHHHHHHHHhhhcCCCcceEEEe-----cCccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIG-----INPYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~-~l~g~a~DL~d~~~~~~~~v~i~-----~~~~eal 170 (398)
+||.|+||+|++|++++..|+..|. .|.. + +++.. +.+ ...++.... ..+... ....+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--l--~R~~~~~~~-~~~~l~~~~----v~~v~~Dl~d~~~l~~a~ 77 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH-----PTYV--F--TRPNSSKTT-LLDEFQSLG----AIIVKGELDEHEKLVELM 77 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC-----CEEE--E--ECTTCSCHH-HHHHHHHTT----CEEEECCTTCHHHHHHHH
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC-----cEEE--E--ECCCCchhh-HHHHhhcCC----CEEEEecCCCHHHHHHHH
Confidence 4899999999999999999999873 2433 2 34432 222 112222211 011111 1134678
Q ss_pred CCCcEEEEeCCC
Q 015897 171 EDAEWALLIGAK 182 (398)
Q Consensus 171 ~dADiViitag~ 182 (398)
+++|+||.+++.
T Consensus 78 ~~~d~vi~~a~~ 89 (318)
T 2r6j_A 78 KKVDVVISALAF 89 (318)
T ss_dssp TTCSEEEECCCG
T ss_pred cCCCEEEECCch
Confidence 899999998764
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.038 Score=50.52 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE------EecCcccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK------IGINPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~------i~~~~~ea 169 (398)
.+++.|+||+|.+|.+++..|+. +. .+.+ .+++.+.++..+. +.... ....++. ......+.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~-g~-----~v~~----~~r~~~~~~~~~~-~~~~~-~~~~D~~~~~~~~~~~~~~~~ 72 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR-DH-----IVYA----LGRNPEHLAALAE-IEGVE-PIESDIVKEVLEEGGVDKLKN 72 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT-TS-----EEEE----EESCHHHHHHHHT-STTEE-EEECCHHHHHHTSSSCGGGTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC-CC-----eEEE----EeCCHHHHHHHHh-hcCCc-ceecccchHHHHHHHHHHHHh
Confidence 46899999999999999999876 32 2433 3666666654332 11110 0000000 00112234
Q ss_pred cCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 FEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 l~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ++.||+++--
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~g~iv~isS~ 134 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA---SGCVIYINSG 134 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEC--
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCeEEEEcCc
Confidence 557899999988653211 121 123455543 355666666553 3667776643
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0057 Score=57.70 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCce-EEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i-~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
|+||+|||+ |++|..++..|... . ++ .+ .|+++++++.....+ + . .+.+..+.++++|
T Consensus 2 ~m~I~iIG~-G~mG~~la~~l~~~-~-----~v~~v----~~~~~~~~~~~~~~~-----g----~-~~~~~~~~~~~~D 60 (276)
T 2i76_A 2 SLVLNFVGT-GTLTRFFLECLKDR-Y-----EIGYI----LSRSIDRARNLAEVY-----G----G-KAATLEKHPELNG 60 (276)
T ss_dssp --CCEEESC-CHHHHHHHHTTC----------CCCE----ECSSHHHHHHHHHHT-----C----C-CCCSSCCCCC---
T ss_pred CceEEEEeC-CHHHHHHHHHHHHc-C-----cEEEE----EeCCHHHHHHHHHHc-----C----C-ccCCHHHHHhcCC
Confidence 368999995 99999999987765 2 24 23 367766665443322 1 1 2344556788999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||++..
T Consensus 61 vVilav~ 67 (276)
T 2i76_A 61 VVFVIVP 67 (276)
T ss_dssp CEEECSC
T ss_pred EEEEeCC
Confidence 9999853
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0076 Score=55.19 Aligned_cols=115 Identities=9% Similarity=-0.038 Sum_probs=61.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-------c
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------P 166 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~ 166 (398)
.+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+++ ... .+..++.-..+ -
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~------~~~-~~~~D~~~~~~v~~~~~~~ 68 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-----WVAS----IDVVENEEAS------ASV-IVKMTDSFTEQADQVTAEV 68 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESSCCTTSS------EEE-ECCCCSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE----EeCChhhccC------CcE-EEEcCCCCHHHHHHHHHHH
Confidence 3456899999999999999999998874 2433 2444333221 000 00001100000 1
Q ss_pred cccc--CCCcEEEEeCCCCC-CC---CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELF--EDAEWALLIGAKPR-GP---GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal--~dADiViitag~~r-k~---g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+ ...|++|..+|... .+ ..+. ...+..|..-...+.+.+...-..++.||+++--
T Consensus 69 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~ 135 (241)
T 1dhr_A 69 GKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK 135 (241)
T ss_dssp HHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred HHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCH
Confidence 1122 47899999988643 11 1121 2346667665555555554432235788888753
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.021 Score=55.67 Aligned_cols=103 Identities=24% Similarity=0.122 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC-------cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN-------PY 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~-------~~ 167 (398)
++||.|+||+|++|++++..|+..+. .|.. + +++.+... +.++.+.. .+. +..| ..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~R~~~~~~--~~~l~~~~-----~v~~v~~D~l~d~~~l~ 68 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-----HVRA--Q--VHSLKGLI--AEELQAIP-----NVTLFQGPLLNNVPLMD 68 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-----CEEE--E--ESCSCSHH--HHHHHTST-----TEEEEESCCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--ECCCChhh--HHHHhhcC-----CcEEEECCccCCHHHHH
Confidence 46899999999999999999998763 2433 2 34444332 12332210 111 1112 23
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
++++++|+||..++... . ..|... +.+++.+.+. +.-..+|.+|-..
T Consensus 69 ~~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPD 115 (352)
T ss_dssp HHHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCC
T ss_pred HHHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHc-CCccEEEEeCCcc
Confidence 56889999997664321 1 124333 6666666664 2124566666443
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.061 Score=52.51 Aligned_cols=97 Identities=23% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+|+||+|+||+|.+|..++..|...+. . .+.+..+....+..+ ...+. ..++.+..-+.+.++++|
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p---~~elv~i~s~~~~G~----~~~~~------~~~i~~~~~~~~~~~~vD 67 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREF-P---VDELFLLASERSEGK----TYRFN------GKTVRVQNVEEFDWSQVH 67 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTC-C---EEEEEEEECTTTTTC----EEEET------TEEEEEEEGGGCCGGGCS
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCC-C---CEEEEEEECCCCCCC----ceeec------CceeEEecCChHHhcCCC
Confidence 368999999999999999998887631 1 133332211111110 00010 123333322345678999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+|+++.|. ..-+++++...+ .++++|..+.+
T Consensus 68 vVf~a~g~----------------~~s~~~a~~~~~---~G~~vId~s~~ 98 (336)
T 2r00_A 68 IALFSAGG----------------ELSAKWAPIAAE---AGVVVIDNTSH 98 (336)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHH---TTCEEEECSST
T ss_pred EEEECCCc----------------hHHHHHHHHHHH---cCCEEEEcCCc
Confidence 99998652 234455555554 25677666655
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0064 Score=59.27 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=60.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-----HHHHHHHHhhhcCCCcceEEE-ecC--c--
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-----LEGVAMELEDSLFPLLREVKI-GIN--P-- 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-----l~g~a~DL~d~~~~~~~~v~i-~~~--~-- 166 (398)
++|.|+||+|+||++++..|+..|. .|.+ + +++.+. ++....++.... + ..+.+ ..| +
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~Dl~d~~ 96 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY-----EVHG--L--IRRSSNFNTQRINHIYIDPHNVN-K--ALMKLHYADLTDAS 96 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCCSSCCCTTTTTTC-----------CCEEEEECCTTCHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC-----EEEE--E--ecCCccccchhhhhhhhcccccc-c--cceEEEECCCCCHH
Confidence 5899999999999999999998764 2433 2 333221 111111110000 0 01211 111 2
Q ss_pred --ccccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhc---CCCeEEEEECC
Q 015897 167 --YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVA---SRNVKVIVVGN 223 (398)
Q Consensus 167 --~eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a---~p~a~vIvvtN 223 (398)
.+++++ .|+||.+++..... ..+....+..|+.-...+.+.+.+.. +.++.+|.+|-
T Consensus 97 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS 162 (381)
T 1n7h_A 97 SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS 162 (381)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCc
Confidence 234444 59999998854211 01233456667766677776666541 12357777653
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.12 Score=50.45 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-------HHHHHHHHhhhcCCCcceEE-EecC--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-------LEGVAMELEDSLFPLLREVK-IGIN-- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-------l~g~a~DL~d~~~~~~~~v~-i~~~-- 165 (398)
.++|.|+||+|.||.+++..|+..|. .|.+ . +++.+. ++..+.+++... .++. +..|
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga-----~Vvl--~--~r~~~~~~~l~~~l~~~~~~~~~~g----~~~~~~~~Dv~ 111 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGA-----NIVI--A--AKTAQPHPKLLGTIYTAAEEIEAVG----GKALPCIVDVR 111 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--E--ESCCSCCSSSCCCHHHHHHHHHHTT----CEEEEEECCTT
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCC-----EEEE--E--ECChhhhhhhHHHHHHHHHHHHhcC----CeEEEEEccCC
Confidence 45899999999999999999999875 2444 2 444332 444555554322 1111 1111
Q ss_pred cc-----------cccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 PY-----------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~~-----------eal~dADiViitag~~r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+. +.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+ ...+.||+++-+
T Consensus 112 d~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~~~g~IV~iSS~ 189 (346)
T 3kvo_A 112 DEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK--SKVAHILNISPP 189 (346)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CSSCEEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 11 22348899999988643 21 1222 234555544 44445555555 356888888866
Q ss_pred ch
Q 015897 225 CN 226 (398)
Q Consensus 225 ~d 226 (398)
..
T Consensus 190 ~~ 191 (346)
T 3kvo_A 190 LN 191 (346)
T ss_dssp CC
T ss_pred HH
Confidence 43
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.14 Score=43.51 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhH
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l 142 (398)
.++|.|+|+ |.+|..++..|...|. ++.+ +|++++++
T Consensus 19 ~~~v~IiG~-G~iG~~la~~L~~~g~-----~V~v----id~~~~~~ 55 (155)
T 2g1u_A 19 SKYIVIFGC-GRLGSLIANLASSSGH-----SVVV----VDKNEYAF 55 (155)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCGGGG
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHH
Confidence 469999995 9999999999988774 2443 36666654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.062 Score=50.08 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=65.4
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc------
Q 015897 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------ 167 (398)
Q Consensus 96 ~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------ 167 (398)
.++|.|+||+ |.||.+++..|+..|. .|.+ .+++.+ ++....++.... +...-+..-..+.
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~-----~V~~----~~r~~~-~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~ 74 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAF----TYLNES-LEKRVRPIAQEL-NSPYVYELDVSKEEHFKSL 74 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEE----EESSTT-THHHHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHH-HHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHH
Confidence 4589999998 9999999999999874 2443 245544 232333443221 1000011000111
Q ss_pred -----cccCCCcEEEEeCCCCCC-----C--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 -----ELFEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 -----eal~dADiViitag~~rk-----~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+...|++|..+|.... + ..+. ...+..|..-...+.+.+...-.+++.||+++-
T Consensus 75 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 75 YNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp HHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 123367999999886532 1 1122 235667766666666666554222577887774
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.031 Score=54.04 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--C
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (398)
+++||+|||+ |.+|..++..|...+-+ +++ .+ .|++.++++..+.++. +..+++..+.+. +
T Consensus 3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~a~~~g---------~~~~~~~~~~l~~~~ 65 (344)
T 3euw_A 3 LTLRIALFGA-GRIGHVHAANIAANPDL----ELV-VI--ADPFIEGAQRLAEANG---------AEAVASPDEVFARDD 65 (344)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCTTE----EEE-EE--ECSSHHHHHHHHHTTT---------CEEESSHHHHTTCSC
T ss_pred CceEEEEECC-cHHHHHHHHHHHhCCCc----EEE-EE--ECCCHHHHHHHHHHcC---------CceeCCHHHHhcCCC
Confidence 4689999995 99999999988775321 122 12 3677777765554321 234556666677 8
Q ss_pred CcEEEEeC
Q 015897 173 AEWALLIG 180 (398)
Q Consensus 173 ADiViita 180 (398)
+|+|+++.
T Consensus 66 ~D~V~i~t 73 (344)
T 3euw_A 66 IDGIVIGS 73 (344)
T ss_dssp CCEEEECS
T ss_pred CCEEEEeC
Confidence 99999864
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.14 Score=48.48 Aligned_cols=116 Identities=9% Similarity=0.008 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC--cc----
Q 015897 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G~--vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~---- 167 (398)
.+++.|+||+|. +|.+++..|+..|. .|.+ .+++++..+ .+.++.... +.. ..+..| +.
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~-~~~~~~~~~-~~~--~~~~~Dv~d~~~v~ 97 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGA-----ELAF----TYQGDALKK-RVEPLAEEL-GAF--VAGHCDVADAASID 97 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTC-----EEEE----EECSHHHHH-HHHHHHHHH-TCE--EEEECCTTCHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-----EEEE----EcCCHHHHH-HHHHHHHhc-CCc--eEEECCCCCHHHHH
Confidence 458999999877 99999999999875 2443 245543222 233333221 110 001111 11
Q ss_pred -------cccCCCcEEEEeCCCCC-----CC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -------ELFEDAEWALLIGAKPR-----GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -------eal~dADiViitag~~r-----k~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+ ..+. ...+..|..-...+.+.+..+-...+.||+++-.
T Consensus 98 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~ 171 (293)
T 3grk_A 98 AVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY 171 (293)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred HHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence 22347899999988653 11 1122 2346666655555555555442346788887743
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.016 Score=54.19 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C-------cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------PY 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~~ 167 (398)
+++.|+||+|.||.+++..|+..|. .|.+ .+++.++++....+ ... .....++. + ..
T Consensus 17 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~--~~~---~~~~Dv~d~~~v~~~~~~~~ 82 (266)
T 3p19_A 17 KLVVITGASSGIGEAIARRFSEEGH-----PLLL----LARRVERLKALNLP--NTL---CAQVDVTDKYTFDTAITRAE 82 (266)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHTTCCT--TEE---EEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHhhcC--Cce---EEEecCCCHHHHHHHHHHHH
Confidence 5789999999999999999999885 2544 36665554322110 000 00001110 0 11
Q ss_pred cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 eal~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~IV~isS~ 147 (266)
T 3p19_A 83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR--NCGTIINISSI 147 (266)
T ss_dssp HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 223378999999886532 1 12222 33555543 455566666664 46778877754
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.028 Score=55.81 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.7
Q ss_pred CEEEEEcCCCchHHHHHH-HHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLF-KLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~-~L~~~~~ 121 (398)
+||+|+||+|.+|..|+. .|...+.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~ 26 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDF 26 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC
Confidence 589999999999999998 7776663
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.029 Score=56.12 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcC-CCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC----ccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVL-GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~-~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal 170 (398)
|+||+|+|| |.+|..++..|+..+-+ . .|.+ .|++.++++..+.++.....+....+..-.. ..+.+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~---~V~v----~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l 72 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFS---HITL----ASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALI 72 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCC---EEEE----EESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCce---EEEE----EECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHH
Confidence 569999997 99999999999987632 2 2444 3788888887777765421000011111111 23445
Q ss_pred CC--CcEEEEeCC
Q 015897 171 ED--AEWALLIGA 181 (398)
Q Consensus 171 ~d--ADiViitag 181 (398)
++ +|+||.+++
T Consensus 73 ~~~~~DvVin~ag 85 (405)
T 4ina_A 73 NEVKPQIVLNIAL 85 (405)
T ss_dssp HHHCCSEEEECSC
T ss_pred HhhCCCEEEECCC
Confidence 55 899999876
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.032 Score=52.14 Aligned_cols=114 Identities=9% Similarity=0.044 Sum_probs=66.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (398)
++|.|+||++.||..++..|+..|. .|++ .|++++.++..+.+..+.. .+..+++-. ..-.+.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-----~V~~----~~~~~~~~~~~~~~~~~~~-~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-----KVCF----IDIDEKRSADFAKERPNLF-YFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHTTCTTEE-EEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhcCCEE-EEEecCCCHHHHHHHHHHHHHH
Confidence 3788999999999999999999885 3544 3677777664444332211 010111000 012356
Q ss_pred cCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 FEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 l~dADiViitag~~rk-~--g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+..-|++|..+|.... + .++.. ..+..|+. ..+...+.+.+. +|.||+++-
T Consensus 73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~---~G~IInisS 133 (247)
T 3ged_A 73 LQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN---KGRIINIAS 133 (247)
T ss_dssp HSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCcEEEEee
Confidence 6789999998886532 2 12222 23445533 456666677652 467777764
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.049 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
+++|.|+||+|.+|.+++..|+..|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g 27 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDK 27 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCT
T ss_pred CCEEEEecCCchHHHHHHHHHHhcC
Confidence 4689999999999999999999887
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.12 Score=48.35 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=63.5
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccc-----
Q 015897 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----- 168 (398)
Q Consensus 96 ~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----- 168 (398)
.++|.|+||+ |.||.+++..|+..|. .|.+ . +++.+ ++....++.+.. +...-+..-..+.+
T Consensus 21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~-~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~ 89 (285)
T 2p91_A 21 GKRALITGVANERSIAYGIAKSFHREGA-----QLAF--T--YATPK-LEKRVREIAKGF-GSDLVVKCDVSLDEDIKNL 89 (285)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTC-----EEEE--E--ESSGG-GHHHHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-----EEEE--E--eCCHH-HHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHH
Confidence 3589999998 8999999999999874 2443 2 44443 222333443211 10000111001111
Q ss_pred ------ccCCCcEEEEeCCCCCC-----C--CCch---hhhHHHHHHHHHHHHHHHHHhcC-CCeEEEEECC
Q 015897 169 ------LFEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVAS-RNVKVIVVGN 223 (398)
Q Consensus 169 ------al~dADiViitag~~rk-----~--g~~r---~dll~~N~~i~~~i~~~i~~~a~-p~a~vIvvtN 223 (398)
.+...|++|..+|.... + ..+. ...+..|..-...+.+.+...-. .++.||+++-
T Consensus 90 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS 161 (285)
T 2p91_A 90 KKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY 161 (285)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 22368999999986532 1 1122 23466676555555555544321 3477777764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0078 Score=56.85 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEEEec--CcccccC--
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~-- 171 (398)
|||.|+||+|++|++++..|+..|. .|.+ + ++.. ...+ .+.... .. ....++. ...++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~----~~~~~~-~~-~~~Dl~~~~~~~~~~~~~ 65 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL-----EVAV--L--DNLATGKRE----NVPKGV-PF-FRVDLRDKEGVERAFREF 65 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--E--CCCSSCCGG----GSCTTC-CE-ECCCTTCHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEE--E--ECCCcCchh----hcccCe-EE-EECCCCCHHHHHHHHHhc
Confidence 4899999999999999999998764 2433 2 3321 1110 111000 00 0000110 1123455
Q ss_pred CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+.|+||.+++..... ..+....+..|+.-...+.+.+.+. . -..+|++|
T Consensus 66 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~-~~~iv~~S 116 (311)
T 2p5y_A 66 RPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-G-VEKLVFAS 116 (311)
T ss_dssp CCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-T-CSEEEEEE
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-C-CCEEEEeC
Confidence 799999988754210 0123346777888888888888774 3 24566555
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.14 Score=43.32 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=55.3
Q ss_pred cCCCEEEEEcCC---CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc
Q 015897 94 KKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 94 ~~~~KI~IiGA~---G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
.++.+|+|||++ |.+|..++..|...|. +| ++++. .. .++. ....+.+..+..
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-----~V----~~vnp--~~-----~~i~--------G~~~~~s~~el~ 67 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF-----EV----LPVNP--NY-----DEIE--------GLKCYRSVRELP 67 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTC-----EE----EEECT--TC-----SEET--------TEECBSSGGGSC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCC-----EE----EEeCC--CC-----CeEC--------CeeecCCHHHhC
Confidence 446899999954 9999999999988765 22 33333 22 0110 123344445555
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHH
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~ 232 (398)
.++|+++++.. .+...++.+.+.+. ..+++++..+.-..-+...+
T Consensus 68 ~~vDlvii~vp----------------~~~v~~v~~~~~~~-g~~~i~~~~~~~~~~l~~~a 112 (138)
T 1y81_A 68 KDVDVIVFVVP----------------PKVGLQVAKEAVEA-GFKKLWFQPGAESEEIRRFL 112 (138)
T ss_dssp TTCCEEEECSC----------------HHHHHHHHHHHHHT-TCCEEEECTTSCCHHHHHHH
T ss_pred CCCCEEEEEeC----------------HHHHHHHHHHHHHc-CCCEEEEcCccHHHHHHHHH
Confidence 68999999743 24555555555553 56665544333233333333
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.02 Score=53.92 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-------ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~e 168 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....++......+..+++-..+ -.+
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGA-----RVAV----LDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 3677777765554432111000001000000 112
Q ss_pred ccCCCcEEEEeCCCCCC--C------CCch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 LFEDAEWALLIGAKPRG--P------GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 al~dADiViitag~~rk--~------g~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+..-|++|..+|.... + ..+. ...+..|. .+.+.+.+.+.+. ++.||+++-
T Consensus 76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~---~g~iv~isS 142 (281)
T 3zv4_A 76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS---RGSVVFTIS 142 (281)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECC
T ss_pred hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 23467999999886421 1 1111 12344453 3455566666553 366666664
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.16 Score=48.03 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=65.4
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC--cc----
Q 015897 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY---- 167 (398)
Q Consensus 96 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~---- 167 (398)
.+++.|+||+| .+|.+++..|+..|. .|.+ .+++++..+.. .++.... +.. ..+..| +.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~-~~~~~~~-~~~--~~~~~Dv~d~~~v~ 96 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGA-----EVAL----TYLSETFKKRV-DPLAESL-GVK--LTVPCDVSDAESVD 96 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEE----EESSGGGHHHH-HHHHHHH-TCC--EEEECCTTCHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHH-HHHHHhc-CCe--EEEEcCCCCHHHHH
Confidence 45899999876 999999999999875 2443 24554433322 2222111 110 111111 11
Q ss_pred -------cccCCCcEEEEeCCCCC-----CC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 168 -------ELFEDAEWALLIGAKPR-----GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 168 -------eal~dADiViitag~~r-----k~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.+...|++|..+|... .+ ..+. ...+..|..-...+.+.+..+-..++.||+++--
T Consensus 97 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~ 170 (296)
T 3k31_A 97 NMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY 170 (296)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence 22346799999998753 11 1122 2346667666666666665543346788887743
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.016 Score=56.30 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh-----hHHHHHHHHhhhcCCCcceEEE-ecC--cc-
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-----ALEGVAMELEDSLFPLLREVKI-GIN--PY- 167 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~-----~l~g~a~DL~d~~~~~~~~v~i-~~~--~~- 167 (398)
++|.|+||+|+||++++..|+..|. .|.+ + +++.+ .++....++.... ...+.+ ..| +.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~Dl~d~~ 92 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY-----EVHG--I--VRRSSSFNTGRIEHLYKNPQAHI---EGNMKLHYGDLTDST 92 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCCSSCCCTTTGGGC------------CEEEEECCTTCHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--ECCccccchhhHHHHhhhhcccc---CCCceEEEccCCCHH
Confidence 6899999999999999999998763 2433 2 33321 1111100000000 011221 111 22
Q ss_pred ---cccCC--CcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCC--CeEEEEECC
Q 015897 168 ---ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGN 223 (398)
Q Consensus 168 ---eal~d--ADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtN 223 (398)
+++++ .|+||.+++..... ..+..+.+..|+.-...+.+.+.+. .. .+.+|.+|-
T Consensus 93 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS 156 (375)
T 1t2a_A 93 CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQAST 156 (375)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecc
Confidence 33443 59999998864211 1123345677888888888888775 22 156666653
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.11 Score=47.71 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=66.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHh---cCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC--cccc-
Q 015897 97 VNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL- 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~---~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea- 169 (398)
+++.|+||+|.+|.+++..|+. .|. .|.+ .+++.+.++..+.++.... + ..++.. ..| +.+.
T Consensus 7 k~~lVTGas~gIG~~ia~~l~~~~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~~~~~v 75 (259)
T 1oaa_A 7 AVCVLTGASRGFGRALAPQLARLLSPGS-----VMLV----SARSESMLRQLKEELGAQQ-P-DLKVVLAAADLGTEAGV 75 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC-----EEEE----EESCHHHHHHHHHHHHHHC-T-TSEEEEEECCTTSHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHHHhhcCCC-----eEEE----EeCCHHHHHHHHHHHHhhC-C-CCeEEEEecCCCCHHHH
Confidence 5788999999999999999998 553 2443 3677777776766665421 0 011111 111 1111
Q ss_pred ------------cCCCc--EEEEeCCCCCCC-C-----Cch---hhhHHHHHHHHHHHHHHHHHhc--C--CCeEEEEEC
Q 015897 170 ------------FEDAE--WALLIGAKPRGP-G-----MER---AGLLDINGQIFAEQGKALNAVA--S--RNVKVIVVG 222 (398)
Q Consensus 170 ------------l~dAD--iViitag~~rk~-g-----~~r---~dll~~N~~i~~~i~~~i~~~a--~--p~a~vIvvt 222 (398)
+..-| ++|..+|..... + .+. ...+..|..-...+.+.+.... . ..+.||+++
T Consensus 76 ~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~is 155 (259)
T 1oaa_A 76 QRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS 155 (259)
T ss_dssp HHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEEC
T ss_pred HHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEc
Confidence 12346 888888864321 1 222 2345666655555555444331 2 347788887
Q ss_pred CC
Q 015897 223 NP 224 (398)
Q Consensus 223 NP 224 (398)
--
T Consensus 156 S~ 157 (259)
T 1oaa_A 156 SL 157 (259)
T ss_dssp CG
T ss_pred Cc
Confidence 54
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.06 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
++||+|+||+|.+|..++..|..++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~ 30 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERD 30 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC
Confidence 3699999999999999999888554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.023 Score=53.94 Aligned_cols=118 Identities=11% Similarity=0.039 Sum_probs=69.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|++++.++..+.++......+..+++-. ....+.
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA-----RVFI----TGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567779999999999999999886 3544 47888888888877743221111111100 012345
Q ss_pred cCCCcEEEEeCCCC-CCCC--Cchh---hhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 FEDAEWALLIGAKP-RGPG--MERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 l~dADiViitag~~-rk~g--~~r~---dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+-.-|++|..+|.. ..|- .+.. +.+..|+.=.-.+++..-.+-..++.||+++-
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 56789999988764 3332 2222 34566655444444443333234567777763
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.023 Score=51.22 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+++.|+||+|.+|.+++..|+..|. .+.+ . +++.+ .|+.+.. . + ..-.+.+...|+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~--~--~r~~~------~D~~~~~-~----v---~~~~~~~g~id~ 62 (223)
T 3uce_A 6 KTVYVVLGGTSGIGAELAKQLESEHT-----IVHV--A--SRQTG------LDISDEK-S----V---YHYFETIGAFDH 62 (223)
T ss_dssp CEEEEEETTTSHHHHHHHHHHCSTTE-----EEEE--E--SGGGT------CCTTCHH-H----H---HHHHHHHCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--e--cCCcc------cCCCCHH-H----H---HHHHHHhCCCCE
Confidence 45788999999999999999988764 2433 2 44332 2332211 0 0 001123356799
Q ss_pred EEEeCCCCC--CC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKPR--GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~r--k~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+|..+|... .+ ..+. ...+..|..-...+.+.+.++-.+++.||+++--
T Consensus 63 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 63 LIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp EEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred EEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 999888642 22 1222 2346677666666666665543346788888743
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.084 Score=50.54 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc----------hhhHHHHHHHHhhhcCCCcceEEE-ec
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----------LQALEGVAMELEDSLFPLLREVKI-GI 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~----------~~~l~g~a~DL~d~~~~~~~~v~i-~~ 164 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ . |++ .+.++..+.++.+.. . ++.. ..
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~-----~Vv~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ 93 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGA-----RVVV--N--DIGVGLDGSPASGGSAAQSVVDEITAAG-G---EAVADGS 93 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--CCCBCTTSSBTCTTSHHHHHHHHHHHTT-C---EEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCcccccccccccHHHHHHHHHHHHhcC-C---cEEEEEC
Confidence 35788999999999999999999875 2443 2 443 556666666665432 1 1221 11
Q ss_pred C--ccc-----------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhc----CCCeE
Q 015897 165 N--PYE-----------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVA----SRNVK 217 (398)
Q Consensus 165 ~--~~e-----------al~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a----~p~a~ 217 (398)
| +.+ .+...|++|..+|...... .+. ...+..|+. +++...+.+.+.. ..++.
T Consensus 94 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 173 (322)
T 3qlj_A 94 NVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGR 173 (322)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcE
Confidence 1 221 2237899999988753211 122 234555654 3444444444321 11378
Q ss_pred EEEECC
Q 015897 218 VIVVGN 223 (398)
Q Consensus 218 vIvvtN 223 (398)
||+++-
T Consensus 174 IV~isS 179 (322)
T 3qlj_A 174 IINTSS 179 (322)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 888874
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=62.54 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-e---cCc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G---INP--- 166 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~---~~~--- 166 (398)
++++|.|+||+|++|++++..|+.. +. .|.+ + +++.+.+. ++... ..+.+ . ++.
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-----~V~~--~--~r~~~~~~----~~~~~-----~~v~~v~~Dl~d~~~~ 375 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHY-----EVYG--L--DIGSDAIS----RFLNH-----PHFHFVEGDISIHSEW 375 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSE-----EEEE--E--ESCCTTTG----GGTTC-----TTEEEEECCTTTCHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCC-----EEEE--E--EcCchhhh----hhccC-----CceEEEECCCCCcHHH
Confidence 4679999999999999999999986 43 2332 2 44433321 11110 01111 1 111
Q ss_pred -ccccCCCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 -~eal~dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.++++++|+||.+++....+. .+..+.+..|+.-...+.+.+.+. . ..+|.+|-
T Consensus 376 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~--~r~V~~SS 432 (660)
T 1z7e_A 376 IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 432 (660)
T ss_dssp HHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred HHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C--CEEEEEec
Confidence 235668999999988643211 123456777888888888888874 3 67777764
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.057 Score=49.70 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHH--HHHHhhhcCCCcceEE-EecCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV--AMELEDSLFPLLREVK-IGINPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~--a~DL~d~~~~~~~~v~-i~~~~~eal~dA 173 (398)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.+... ..|+.+.. .+. ......+.+...
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~d~~d~~-----~v~~~~~~~~~~~g~i 88 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSW-----NTIS--I--DFRENPNADHSFTIKDSGEE-----EIKSVIEKINSKSIKV 88 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCCTTSSEEEECSCSSHH-----HHHHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCcccccccceEEEeCCHH-----HHHHHHHHHHHHcCCC
Confidence 4799999999999999999999874 2433 2 4443332100 00000000 000 000112234467
Q ss_pred cEEEEeCCCCCCC----CCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 174 EWALLIGAKPRGP----GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 174 DiViitag~~rk~----g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|++|..+|..... ..+ -...+..|+.-...+.+.+......++.||+++--.
T Consensus 89 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 147 (251)
T 3orf_A 89 DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA 147 (251)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence 9999998864211 111 123466676666666666555433457888887543
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0087 Score=57.61 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecC------cccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~------~~ea 169 (398)
+||.|+||+|++|++++..|+..+-......|.. + +++..... +.+ ..+.+ ..| ..++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~--~--~r~~~~~~-----~~~------~~~~~~~~Dl~d~~~~~~~ 66 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYG--V--ARRTRPAW-----HED------NPINYVQCDISDPDDSQAK 66 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEE--E--ESSCCCSC-----CCS------SCCEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEE--E--eCCCCccc-----ccc------CceEEEEeecCCHHHHHHH
Confidence 5899999999999999999987661000002332 2 34322211 110 01111 111 1245
Q ss_pred cCC---CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 170 FED---AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 170 l~d---ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+++ +|+||.+++... .+..+....|+.-...+.+.+.+.
T Consensus 67 ~~~~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~ 108 (364)
T 2v6g_A 67 LSPLTDVTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPN 108 (364)
T ss_dssp HTTCTTCCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHh
Confidence 666 999999988652 345567888999999999888875
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.031 Score=52.88 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC-cceEEEec--CcccccCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFED 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~eal~d 172 (398)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... .. .....++. +..+.+++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~-----~V~i----~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHh
Confidence 46899999889999999999999874 2443 3677777777777665321 11 11112211 12456788
Q ss_pred CcEEEEeCCCC
Q 015897 173 AEWALLIGAKP 183 (398)
Q Consensus 173 ADiViitag~~ 183 (398)
+|+||.+++..
T Consensus 189 ~DvlVn~ag~g 199 (287)
T 1lu9_A 189 AHFVFTAGAIG 199 (287)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEECCCcc
Confidence 99999998653
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0087 Score=58.82 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=42.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC----cccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYEL 169 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~ea 169 (398)
-+.|||.|+|| |+||+.++..|.... .+.+ .|++.++++.. .+ ....+.+-.. ..+.
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~~~------~v~~----~~~~~~~~~~~----~~----~~~~~~~d~~d~~~l~~~ 74 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKDEF------DVYI----GDVNNENLEKV----KE----FATPLKVDASNFDKLVEV 74 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTTTS------EEEE----EESCHHHHHHH----TT----TSEEEECCTTCHHHHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHhcCC------CeEE----EEcCHHHHHHH----hc----cCCcEEEecCCHHHHHHH
Confidence 45679999996 999999998885431 3543 36666666532 11 1112222112 2456
Q ss_pred cCCCcEEEEeCC
Q 015897 170 FEDAEWALLIGA 181 (398)
Q Consensus 170 l~dADiViitag 181 (398)
++++|+||.+.+
T Consensus 75 ~~~~DvVi~~~p 86 (365)
T 3abi_A 75 MKEFELVIGALP 86 (365)
T ss_dssp HTTCSEEEECCC
T ss_pred HhCCCEEEEecC
Confidence 799999999864
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.07 Score=48.55 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-C-------ccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N-------PYE 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~-------~~e 168 (398)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+ ..++. .. .. ...++. + ..+
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~-----~V~~----~~r~~~~~---~~~~~-~~-~~--~~D~~~~~~~~~~~~~~~ 66 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGY-----RVAI----ASRNPEEA---AQSLG-AV-PL--PTDLEKDDPKGLVKRALE 66 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCHHH---HHHHT-CE-EE--ECCTTTSCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHH---HHhhC-cE-EE--ecCCchHHHHHHHHHHHH
Confidence 4799999999999999999999874 2443 25554442 22221 10 00 011111 1 112
Q ss_pred ccCCCcEEEEeCCCCC-CC--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~r-k~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|... .+ ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 130 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA--GWGRVLFIGSV 130 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 3457899999988643 22 1222 233444543 455555555653 46788887743
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.097 Score=50.34 Aligned_cols=117 Identities=9% Similarity=0.065 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc-------ccchhhHHHHHHHHhhhcCCCcceEEEecC---
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-------ERSLQALEGVAMELEDSLFPLLREVKIGIN--- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~-------D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--- 165 (398)
.+++.|+||+|.||.+++..|+..|. .|.+ .|. .++.++++..+.++.... .. ....+..-
T Consensus 9 gk~~lVTGas~GIG~~~a~~La~~Ga-----~Vv~--~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~~-~~~D~~~~~~~ 79 (319)
T 1gz6_A 9 GRVVLVTGAGGGLGRAYALAFAERGA-----LVVV--NDLGGDFKGVGKGSSAADKVVEEIRRRG-GK-AVANYDSVEAG 79 (319)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--ECCCBCTTSCBCCSHHHHHHHHHHHHTT-CE-EEEECCCGGGH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--EcCCcccccccCCHHHHHHHHHHHHhhC-Ce-EEEeCCCHHHH
Confidence 46899999999999999999999874 2443 222 234566666666665422 10 00111110
Q ss_pred ------cccccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 ------PYELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ------~~eal~dADiViitag~~rk~g---~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..+.+...|++|..+|..+... ++.. ..+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~grIV~vsS 151 (319)
T 1gz6_A 80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTAS 151 (319)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 1122457899999998754321 2221 23455543 355555566663 4578888774
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.057 Score=49.78 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-------cccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~ea 169 (398)
+++.|+||+|.+|.+++..|+..|. +. .|.+ .+++++.++....++......+..+++-..+ -.+.
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~-~~--~v~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDK-DT--VVYG----VARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCS-SC--EEEE----EESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCC-Ce--EEEE----ecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999998752 10 1322 4677777766655543211000001100000 1122
Q ss_pred cCCCcEEEEeCCCCC--CC--CCchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 FEDAEWALLIGAKPR--GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 l~dADiViitag~~r--k~--g~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+...|++|..+|... .+ ..+.. ..+..|. .+.+...+.+.+. ++.||+++--
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~---~g~iv~isS~ 138 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT---NGNVVFVSSD 138 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCS
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc---CCeEEEEcCc
Confidence 347899999998632 22 12222 2345553 3455556666663 2777777754
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.034 Score=53.62 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=44.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (398)
++++||+|||+ |.+|..++..|...+-+ +++ .+ .|++.++++..+..+.- + ..+++..+.+.
T Consensus 3 m~~~~igiiG~-G~~g~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~~~~~~~---~-----~~~~~~~~ll~~~ 66 (330)
T 3e9m_A 3 LDKIRYGIMST-AQIVPRFVAGLRESAQA----EVR-GI--ASRRLENAQKMAKELAI---P-----VAYGSYEELCKDE 66 (330)
T ss_dssp CCCEEEEECSC-CTTHHHHHHHHHHSSSE----EEE-EE--BCSSSHHHHHHHHHTTC---C-----CCBSSHHHHHHCT
T ss_pred CCeEEEEEECc-hHHHHHHHHHHHhCCCc----EEE-EE--EeCCHHHHHHHHHHcCC---C-----ceeCCHHHHhcCC
Confidence 45689999995 99999999988774321 122 12 36777777655544211 1 12344455555
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
++|+|+++.
T Consensus 67 ~~D~V~i~t 75 (330)
T 3e9m_A 67 TIDIIYIPT 75 (330)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEcC
Confidence 799999864
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.035 Score=55.20 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLF-KLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~-~L~~~~~ 121 (398)
.+||+|+||+|.+|..|+. .|...+.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~ 30 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDF 30 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCC
Confidence 4799999999999999999 7776663
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.071 Score=56.17 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc---------chhhHHHHHHHHhhhcCCCcceEEEec--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---------SLQALEGVAMELEDSLFPLLREVKIGI-- 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~---------~~~~l~g~a~DL~d~~~~~~~~v~i~~-- 164 (398)
.+.+.|+||+|.||.+++..|+..|. .|.+ . |+ +.+.++..+.++.........++.-..
T Consensus 19 gk~~lVTGas~GIG~aiA~~La~~Ga-----~Vv~--~--~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~ 89 (613)
T 3oml_A 19 GRVAVVTGAGAGLGREYALLFAERGA-----KVVV--N--DLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDG 89 (613)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--C----------------CHHHHHHHHHHTTCCEEECCCCGGGH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHH
Confidence 45788889999999999999999875 2443 2 44 556677666666543211101110000
Q ss_pred -----CcccccCCCcEEEEeCCCCCCC---CCchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 165 -----NPYELFEDAEWALLIGAKPRGP---GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 165 -----~~~eal~dADiViitag~~rk~---g~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.-.+.+...|++|..+|..+.. .++.. ..+..|+. +.+...+.|.+. ..+.||+++-
T Consensus 90 ~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~--~~g~IV~isS 161 (613)
T 3oml_A 90 AKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ--NYGRIIMTSS 161 (613)
T ss_dssp HHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEECC
T ss_pred HHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 1122334679999998875322 22222 23445543 455566666663 4688888764
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.06 Score=52.12 Aligned_cols=73 Identities=15% Similarity=-0.014 Sum_probs=50.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+..+|+||| +|.+|...+..|....-+. .+.+ .|++.++++..+.++.... ..+. ..+..+++ ++
T Consensus 123 ~~~~~v~iIG-aG~~a~~~~~al~~~~~~~---~V~v----~~r~~~~a~~la~~~~~~~----~~~~-~~~~~e~v-~a 188 (322)
T 1omo_A 123 KNSSVFGFIG-CGTQAYFQLEALRRVFDIG---EVKA----YDVREKAAKKFVSYCEDRG----ISAS-VQPAEEAS-RC 188 (322)
T ss_dssp TTCCEEEEEC-CSHHHHHHHHHHHHHSCCC---EEEE----ECSSHHHHHHHHHHHHHTT----CCEE-ECCHHHHT-SS
T ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHhCCcc---EEEE----ECCCHHHHHHHHHHHHhcC----ceEE-ECCHHHHh-CC
Confidence 3467999999 4999999998887632122 2544 3788888888887765321 1234 45566788 99
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++-
T Consensus 189 DvVi~aT 195 (322)
T 1omo_A 189 DVLVTTT 195 (322)
T ss_dssp SEEEECC
T ss_pred CEEEEee
Confidence 9999864
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.02 Score=56.41 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+...|+||+|+||+|.+|..++..|...+.
T Consensus 9 ~~~~~~~V~IvGAtG~vG~ellrlL~~hP~ 38 (351)
T 1vkn_A 9 HHHHMIRAGIIGATGYTGLELVRLLKNHPE 38 (351)
T ss_dssp ---CCEEEEEESTTSHHHHHHHHHHHHCTT
T ss_pred cccceeEEEEECCCCHHHHHHHHHHHcCCC
Confidence 345689999999999999999999998754
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=53.51 Aligned_cols=113 Identities=8% Similarity=-0.008 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-------Cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~e 168 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++++.+++ ... ....++.-.. ...+
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~------~~~-~~~~D~~~~~~~~~~~~~~~~ 66 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-----TVLN--I--DLSANDQAD------SNI-LVDGNKNWTEQEQSILEQTAS 66 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-----EEEE--E--ESSCCTTSS------EEE-ECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--ecCcccccc------ccE-EEeCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999874 2433 2 444333211 000 0000100000 0111
Q ss_pred cc--CCCcEEEEeCCCCC-CC---CCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LF--EDAEWALLIGAKPR-GP---GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al--~dADiViitag~~r-k~---g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+ .+.|++|..+|... .+ ..+ -...+..|..-...+.+.+.+....++.||+++--
T Consensus 67 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 131 (236)
T 1ooe_A 67 SLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA 131 (236)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred HhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence 22 47899999988643 11 111 12346667666666666655542235788888754
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.1 Score=50.31 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCcCCCCCceEEEecccccchhh-HHHHHHHHhhhcCCCcceEEEecCccccc--
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIGINPYELF-- 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~i~L~L~d~D~~~~~-l~g~a~DL~d~~~~~~~~v~i~~~~~eal-- 170 (398)
+++||+||| +|.+|..++..|.. ..-+ ++.. + .|++.++ .+..+.++. . . ...++.+++
T Consensus 3 ~~irVaIIG-~G~iG~~~~~~l~~~~~~~----elva-v--~d~~~~~~~~~~a~~~g-----~--~--~~~~~~e~ll~ 65 (312)
T 1nvm_B 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYL----EMGA-M--VGIDAASDGLARAQRMG-----V--T--TTYAGVEGLIK 65 (312)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSSE----EEEE-E--ECSCTTCHHHHHHHHTT-----C--C--EESSHHHHHHH
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHhhCcCe----EEEE-E--EeCChhhhHHHHHHHcC-----C--C--cccCCHHHHHh
Confidence 468999999 59999999888865 3211 1222 2 3566555 443443321 1 1 122344443
Q ss_pred ----CCCcEEEEeCC
Q 015897 171 ----EDAEWALLIGA 181 (398)
Q Consensus 171 ----~dADiViitag 181 (398)
.+.|+|+++.+
T Consensus 66 ~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 66 LPEFADIDFVFDATS 80 (312)
T ss_dssp SGGGGGEEEEEECSC
T ss_pred ccCCCCCcEEEECCC
Confidence 57899999865
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.2 Score=46.01 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=64.2
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-HHHHHHHHhhhcCCCcceEEEe-c--Cc--
Q 015897 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG-I--NP-- 166 (398)
Q Consensus 95 ~~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-l~g~a~DL~d~~~~~~~~v~i~-~--~~-- 166 (398)
+.+++.|+||+ |.+|.+++..|+..|. .+.+ . +++.+. ++....++.... + .++.+. . .+
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-----~v~~--~--~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~ 86 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-----AVAI--T--YASRAQGAEENVKELEKTY-G--IKAKAYKCQVDSYE 86 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHHTSC-----EEEE--C--BSSSSSHHHHHHHHHHHHH-C--CCEECCBCCTTCHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHCCC-----eEEE--E--eCCcchhHHHHHHHHHHhc-C--CceeEEecCCCCHH
Confidence 45689999998 7999999999999875 2433 2 333222 244455554321 1 011111 0 11
Q ss_pred ---------ccccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 ---------YELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ---------~eal~dADiViitag~~rk~g---~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+..-|++|..+|...... .+. ...+..|. .+.+.+.+.+.+. ..+.||+++-.
T Consensus 87 ~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 161 (267)
T 3gdg_A 87 SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKER--GTGSLVITASM 161 (267)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHc--CCceEEEEccc
Confidence 122346799999988653221 122 23345553 3455555666664 45677776643
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=56.75 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| .|.+|..++..+...|. .|.. + |++.+... . +....+..+.+++||+
T Consensus 164 g~~vgIIG-~G~iG~~vA~~l~~~G~-----~V~~--~--dr~~~~~~-----------g----~~~~~~l~ell~~aDv 218 (333)
T 3ba1_A 164 GKRVGIIG-LGRIGLAVAERAEAFDC-----PISY--F--SRSKKPNT-----------N----YTYYGSVVELASNSDI 218 (333)
T ss_dssp TCCEEEEC-CSHHHHHHHHHHHTTTC-----CEEE--E--CSSCCTTC-----------C----SEEESCHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--CCCchhcc-----------C----ceecCCHHHHHhcCCE
Confidence 35899999 59999999999987664 2443 3 55433211 1 1223456678899999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
|+++.
T Consensus 219 Vil~v 223 (333)
T 3ba1_A 219 LVVAC 223 (333)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99975
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.091 Score=49.76 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=43.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCcccccCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFED 172 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~d 172 (398)
.+++||+|+||+|.+|..++..+....-+ +++- . +|.+.+.+. ..|+.+.. ... ..+.++.+..+.+++
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~----elva-~--~d~~~~~~~--g~d~~~~~-g~~~~~v~~~~dl~~~l~~ 72 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGV----QLGA-A--LEREGSSLL--GSDAGELA-GAGKTGVTVQSSLDAVKDD 72 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTE----ECCC-E--ECCTTCTTC--SCCTTCSS-SSSCCSCCEESCSTTTTTS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCC----EEEE-E--EecCchhhh--hhhHHHHc-CCCcCCceecCCHHHHhcC
Confidence 45689999998899999999987754311 1211 1 244432221 12222211 111 134455666677889
Q ss_pred CcEEE-Ee
Q 015897 173 AEWAL-LI 179 (398)
Q Consensus 173 ADiVi-it 179 (398)
+|+|| ++
T Consensus 73 ~DvVIDft 80 (273)
T 1dih_A 73 FDVFIDFT 80 (273)
T ss_dssp CSEEEECS
T ss_pred CCEEEEcC
Confidence 99999 44
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.011 Score=55.85 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=60.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhc--CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CC
Q 015897 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~--~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (398)
||.|+||+|++|++++..|+.. +. .|.. + +++....+ ... ....++.-.....++++ +.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~--~--~r~~~~~~-------~~~-~~~~D~~d~~~~~~~~~~~~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK-----NVIA--S--DIVQRDTG-------GIK-FITLDVSNRDEIDRAVEKYSI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG-----GEEE--E--ESSCCCCT-------TCC-EEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC-----EEEE--e--cCCCcccc-------Cce-EEEecCCCHHHHHHHHhhcCC
Confidence 5899999999999999999886 43 2432 2 33222111 000 00000000001123444 89
Q ss_pred cEEEEeCCCCCCCC-CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 174 EWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 174 DiViitag~~rk~g-~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+||.+++...... .+..+.+..|+.-...+.+.+.+. + -..+|.+|
T Consensus 64 d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~~v~~S 111 (317)
T 3ajr_A 64 DAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-R-VEKVVIPS 111 (317)
T ss_dssp CEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEEE
T ss_pred cEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-C-CCEEEEec
Confidence 99999987532111 123456778888888888888874 2 23555554
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.35 Score=44.66 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=68.5
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc--eEEEec-------
Q 015897 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIGI------- 164 (398)
Q Consensus 96 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~--~v~i~~------- 164 (398)
-+.+.|+||+| .||..++..|+..|- .|++ .+++++.++..+..+++...+... ...++.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga-----~Vvi----~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 76 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGA-----KLVF----TYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVING 76 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTC-----EEEE----EESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHH
Confidence 45788889876 699999999999885 3554 367777777666666543211100 111111
Q ss_pred --CcccccCCCcEEEEeCCCCCC-----C--CCchhhh---HHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 165 --NPYELFEDAEWALLIGAKPRG-----P--GMERAGL---LDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 165 --~~~eal~dADiViitag~~rk-----~--g~~r~dl---l~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
...+.+...|++|..+|.... + ..++.++ +..|..-....++....+...+|.||+++-
T Consensus 77 ~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 77 FEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 012456689999998875421 1 1123322 344544444444444444345688888874
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.069 Score=49.72 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=49.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-----------------hhhHHHHHHHHhhhcCCCcce
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLRE 159 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-----------------~~~l~g~a~DL~d~~~~~~~~ 159 (398)
.||.|+|+ |.+|+.++..|+..|+ + .|. ++|.|.- ..+++..+..|.+.. |.. +
T Consensus 32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~---~i~--lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~-~ 102 (249)
T 1jw9_B 32 SRVLIVGL-GGLGCAASQYLASAGV-G---NLT--LLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN-PHI-A 102 (249)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-S---EEE--EECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TTS-E
T ss_pred CeEEEEee-CHHHHHHHHHHHHcCC-C---eEE--EEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC-CCc-E
Confidence 58999995 9999999999999886 2 244 4554431 156776777776543 221 2
Q ss_pred EEEec------CcccccCCCcEEEEeCC
Q 015897 160 VKIGI------NPYELFEDAEWALLIGA 181 (398)
Q Consensus 160 v~i~~------~~~eal~dADiViitag 181 (398)
+.... +..+.++++|+||.+.+
T Consensus 103 v~~~~~~~~~~~~~~~~~~~DvVi~~~d 130 (249)
T 1jw9_B 103 ITPVNALLDDAELAALIAEHDLVLDCTD 130 (249)
T ss_dssp EEEECSCCCHHHHHHHHHTSSEEEECCS
T ss_pred EEEEeccCCHhHHHHHHhCCCEEEEeCC
Confidence 22211 12345789999998754
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.023 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++|.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlVtGasggiG~~la~~l~~~G~ 27 (242)
T 1uay_A 3 RSALVTGGASGLGRAAALALKARGY 27 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999998874
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.044 Score=52.48 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.++|.|+|| |.+|..++..|+..|.. .|.+ .+++.++++..+.++.... . .+....+..+.+.++|+
T Consensus 141 ~~~vlVlGa-Gg~g~aia~~L~~~G~~----~V~v----~nR~~~ka~~la~~~~~~~-~---~~~~~~~~~~~~~~aDi 207 (297)
T 2egg_A 141 GKRILVIGA-GGGARGIYFSLLSTAAE----RIDM----ANRTVEKAERLVREGDERR-S---AYFSLAEAETRLAEYDI 207 (297)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCS----EEEE----ECSSHHHHHHHHHHSCSSS-C---CEECHHHHHHTGGGCSE
T ss_pred CCEEEEECc-HHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHhhhcc-C---ceeeHHHHHhhhccCCE
Confidence 569999995 99999999999987741 2544 3778788877776553210 0 11111234567889999
Q ss_pred EEEeCCCCC
Q 015897 176 ALLIGAKPR 184 (398)
Q Consensus 176 Viitag~~r 184 (398)
||.+.+.+.
T Consensus 208 vIn~t~~~~ 216 (297)
T 2egg_A 208 IINTTSVGM 216 (297)
T ss_dssp EEECSCTTC
T ss_pred EEECCCCCC
Confidence 999876554
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.46 E-value=0.024 Score=52.83 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=62.1
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhcCcCCCCCceEEEecccccchhh-HHHHHHHHhhhcCCCcceEEEecCccc----
Q 015897 96 MVNIAVSGA--AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIGINPYE---- 168 (398)
Q Consensus 96 ~~KI~IiGA--~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~-l~g~a~DL~d~~~~~~~~v~i~~~~~e---- 168 (398)
.+++.|+|| +|.+|.+++..|+..|. .|.+ .+++.+. ++....++.. .. .-+..-..+.+
T Consensus 7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~---~~-~~~~~Dv~~~~~v~~ 73 (269)
T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQGA-----QLVL----TGFDRLRLIQRITDRLPA---KA-PLLELDVQNEEHLAS 73 (269)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTC-----EEEE----EECSCHHHHHHHHTTSSS---CC-CEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHHCCC-----EEEE----EecChHHHHHHHHHhcCC---Cc-eEEEccCCCHHHHHH
Confidence 357999998 89999999999999874 2443 2555443 2333222211 00 00110001111
Q ss_pred c-------cC---CCcEEEEeCCCCC------CC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 169 L-------FE---DAEWALLIGAKPR------GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 169 a-------l~---dADiViitag~~r------k~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
. +. ..|++|..+|... .+ ..+. ...+..|+.-...+.+.+..+-..++.||+++
T Consensus 74 ~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 74 LAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 1 22 7899999988653 11 1122 23456676655566666554422346777775
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.032 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGM--IANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~--vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|+ +|.+++..|+..|.
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~ 53 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGA 53 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCC
Confidence 468999999866 99999999999875
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.035 Score=53.72 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=43.9
Q ss_pred hccCCCEEEEEcCCCchHH-HHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc
Q 015897 92 SWKKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~-~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
..++|+||+||| +|.+|. +.+..+...+-+. -+.+ .|++.++++..+.++.- + ..+++..+.+
T Consensus 19 ~~~~mirigiIG-~G~ig~~~~~~~~~~~~~~~---lvav----~d~~~~~a~~~a~~~g~---~-----~~y~d~~ell 82 (350)
T 4had_A 19 YFQSMLRFGIIS-TAKIGRDNVVPAIQDAENCV---VTAI----ASRDLTRAREMADRFSV---P-----HAFGSYEEML 82 (350)
T ss_dssp ---CCEEEEEES-CCHHHHHTHHHHHHHCSSEE---EEEE----ECSSHHHHHHHHHHHTC---S-----EEESSHHHHH
T ss_pred cccCccEEEEEc-ChHHHHHHHHHHHHhCCCeE---EEEE----ECCCHHHHHHHHHHcCC---C-----eeeCCHHHHh
Confidence 456789999999 599996 4667666543211 1222 37788888777765421 1 2344444444
Q ss_pred --CCCcEEEEeC
Q 015897 171 --EDAEWALLIG 180 (398)
Q Consensus 171 --~dADiViita 180 (398)
.+.|+|+++.
T Consensus 83 ~~~~iDaV~I~t 94 (350)
T 4had_A 83 ASDVIDAVYIPL 94 (350)
T ss_dssp HCSSCSEEEECS
T ss_pred cCCCCCEEEEeC
Confidence 4689999864
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.15 Score=47.38 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.||.+++..|+..|.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~ 33 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGS 33 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 45899999999999999999999874
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.072 Score=51.74 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (398)
+++||+|||+ |.+|...+..|... +-+ +++ .+ .|+++++++..+..+. +..+++..+.++
T Consensus 12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~----~lv-av--~d~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~ 74 (354)
T 3q2i_A 12 RKIRFALVGC-GRIANNHFGALEKHADRA----ELI-DV--CDIDPAALKAAVERTG---------ARGHASLTDMLAQT 74 (354)
T ss_dssp SCEEEEEECC-STTHHHHHHHHHHTTTTE----EEE-EE--ECSSHHHHHHHHHHHC---------CEEESCHHHHHHHC
T ss_pred CcceEEEEcC-cHHHHHHHHHHHhCCCCe----EEE-EE--EcCCHHHHHHHHHHcC---------CceeCCHHHHhcCC
Confidence 5689999995 99999999888875 211 122 12 3677777765554321 234555555565
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
++|+|+++.
T Consensus 75 ~~D~V~i~t 83 (354)
T 3q2i_A 75 DADIVILTT 83 (354)
T ss_dssp CCSEEEECS
T ss_pred CCCEEEECC
Confidence 899999864
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.054 Score=50.30 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+|||+||| +|.+|.+++..|...|.
T Consensus 5 ~~mkI~IIG-~G~~G~sLA~~L~~~G~ 30 (232)
T 3dfu_A 5 PRLRVGIFD-DGSSTVNMAEKLDSVGH 30 (232)
T ss_dssp CCCEEEEEC-CSCCCSCHHHHHHHTTC
T ss_pred CCcEEEEEe-eCHHHHHHHHHHHHCCC
Confidence 357999999 59999999999998875
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.049 Score=53.38 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=52.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
++|+||| .|.||..++..+...|. .|.. + |++.+. + . . .....+..+.+++||+|
T Consensus 172 ktiGIIG-lG~IG~~vA~~l~~~G~-----~V~~--~--dr~~~~------~----~-~----~~~~~sl~ell~~aDvV 226 (340)
T 4dgs_A 172 KRIGVLG-LGQIGRALASRAEAFGM-----SVRY--W--NRSTLS------G----V-D----WIAHQSPVDLARDSDVL 226 (340)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE--E--CSSCCT------T----S-C----CEECSSHHHHHHTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--cCCccc------c----c-C----ceecCCHHHHHhcCCEE
Confidence 6999999 59999999999987664 2432 3 554332 0 0 1 12234677889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+++.... .+ +..++. .+.+... .|++++|+++--
T Consensus 227 il~vP~t----~~-------t~~li~--~~~l~~m-k~gailIN~aRG 260 (340)
T 4dgs_A 227 AVCVAAS----AA-------TQNIVD--ASLLQAL-GPEGIVVNVARG 260 (340)
T ss_dssp EECC---------------------C--HHHHHHT-TTTCEEEECSCC
T ss_pred EEeCCCC----HH-------HHHHhh--HHHHhcC-CCCCEEEECCCC
Confidence 9974211 00 111220 1223333 689999998743
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.091 Score=50.03 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--CcccccCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFED 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~d 172 (398)
+..++.|+|| |.+|.+++..|+..|.- .|.+ .+++.++++..+.++.... +. ..+.... +..+.+.+
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~----~v~i----~~R~~~~a~~la~~~~~~~-~~-~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GR-EAVVGVDARGIEDVIAA 194 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSSHHHHHHHHHHHHHHH-TS-CCEEEECSTTHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EECCHHHHHHHHHHHHhhc-CC-ceEEEcCHHHHHHHHhc
Confidence 3469999996 99999999999987751 2544 3788888888888776432 11 1233322 34566789
Q ss_pred CcEEEEeCC
Q 015897 173 AEWALLIGA 181 (398)
Q Consensus 173 ADiViitag 181 (398)
+|+||.+-.
T Consensus 195 ~DiVInaTp 203 (283)
T 3jyo_A 195 ADGVVNATP 203 (283)
T ss_dssp SSEEEECSS
T ss_pred CCEEEECCC
Confidence 999998743
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.095 Score=48.80 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=45.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||+|||+ |.+|..++..|...+. + +.+ .|++.++++..+.++.. . ..+..+. +++|+||
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~--~---v~v----~~r~~~~~~~l~~~~~~-------~---~~~~~~~-~~~Divi 176 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGL--E---VWV----WNRTPQRALALAEEFGL-------R---AVPLEKA-REARLLV 176 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTC--C---EEE----ECSSHHHHHHHHHHHTC-------E---ECCGGGG-GGCSEEE
T ss_pred eEEEECC-cHHHHHHHHHHHHCCC--E---EEE----EECCHHHHHHHHHHhcc-------c---hhhHhhc-cCCCEEE
Confidence 8999995 9999999999998774 2 554 36777776655544321 1 2344555 8999999
Q ss_pred EeCCCC
Q 015897 178 LIGAKP 183 (398)
Q Consensus 178 itag~~ 183 (398)
++...+
T Consensus 177 ~~tp~~ 182 (263)
T 2d5c_A 177 NATRVG 182 (263)
T ss_dssp ECSSTT
T ss_pred EccCCC
Confidence 986544
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.077 Score=48.92 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.++|.|||| |.+|...+..|+..|- .|.+ ++.+..+ .++ +|.+.. .. .+....-..+++.++|+
T Consensus 31 gk~VLVVGg-G~va~~ka~~Ll~~GA-----~VtV--vap~~~~-~l~----~l~~~~-~i--~~i~~~~~~~dL~~adL 94 (223)
T 3dfz_A 31 GRSVLVVGG-GTIATRRIKGFLQEGA-----AITV--VAPTVSA-EIN----EWEAKG-QL--RVKRKKVGEEDLLNVFF 94 (223)
T ss_dssp TCCEEEECC-SHHHHHHHHHHGGGCC-----CEEE--ECSSCCH-HHH----HHHHTT-SC--EEECSCCCGGGSSSCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--ECCCCCH-HHH----HHHHcC-Cc--EEEECCCCHhHhCCCCE
Confidence 468999995 9999999999998874 2544 3333322 222 222211 10 11122235678999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC--chhHHHHHHHHCCCCCCceEEecCchhH-
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNALICLKNAPSIPAKNFHALTRLDE- 252 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP--~d~~t~~~~k~~~~~~~kvig~gt~lDs- 252 (398)
||.+-+.+ ..|..+.. .|..+..|-++.|| ||...+.+.+.. .+ +|+..|.=-+
T Consensus 95 VIaAT~d~-----------~~N~~I~~--------~ak~gi~VNvvD~p~~~~f~~Paiv~rg-~l---~iaIST~G~sP 151 (223)
T 3dfz_A 95 IVVATNDQ-----------AVNKFVKQ--------HIKNDQLVNMASSFSDGNIQIPAQFSRG-RL---SLAISTDGASP 151 (223)
T ss_dssp EEECCCCT-----------HHHHHHHH--------HSCTTCEEEC-----CCSEECCEEEEET-TE---EEEEECTTSCH
T ss_pred EEECCCCH-----------HHHHHHHH--------HHhCCCEEEEeCCcccCeEEEeeEEEeC-CE---EEEEECCCCCc
Confidence 99875543 12333222 22234557777887 665554443332 12 4544432222
Q ss_pred ---HHHHHHHHHHc
Q 015897 253 ---NRAKCQLALKA 263 (398)
Q Consensus 253 ---~Rl~~~lA~~l 263 (398)
.+++..|.+.+
T Consensus 152 ~la~~iR~~ie~~l 165 (223)
T 3dfz_A 152 LLTKRIKEDLSSNY 165 (223)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc
Confidence 44555555554
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.1 Score=49.57 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.++|+||| +|.+|..++..+...|. .|.. .|++.++++. +.++ .. ...-..+..+.++++|+
T Consensus 155 g~~v~IiG-~G~iG~~~a~~l~~~G~-----~V~~----~dr~~~~~~~-~~~~-----g~--~~~~~~~l~~~l~~aDv 216 (293)
T 3d4o_A 155 GANVAVLG-LGRVGMSVARKFAALGA-----KVKV----GARESDLLAR-IAEM-----GM--EPFHISKAAQELRDVDV 216 (293)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHH-HHHT-----TS--EEEEGGGHHHHTTTCSE
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHH-HHHC-----CC--eecChhhHHHHhcCCCE
Confidence 46999999 59999999999987764 2433 3666554432 1121 11 11111234567899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~ 227 (398)
|+++... ++ + |. ..+... .|++++|+++ +|.++
T Consensus 217 Vi~~~p~----~~-----i--~~-------~~l~~m-k~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 217 CINTIPA----LV-----V--TA-------NVLAEM-PSHTFVIDLASKPGGT 250 (293)
T ss_dssp EEECCSS----CC-----B--CH-------HHHHHS-CTTCEEEECSSTTCSB
T ss_pred EEECCCh----HH-----h--CH-------HHHHhc-CCCCEEEEecCCCCCC
Confidence 9998632 11 1 11 123333 5899999998 66543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.072 Score=54.73 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=43.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc------CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAG------EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP 166 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~------~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~ 166 (398)
.+.++||+||| .|++|.+++..|... |+ .+.+. .+.+ .+....+.+. ....... ...+.
T Consensus 51 L~GiKkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~-----~ViVg---~r~~-sks~e~A~e~--G~~v~d~---ta~s~ 115 (525)
T 3fr7_A 51 FKGIKQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKIG---LRKG-SKSFDEARAA--GFTEESG---TLGDI 115 (525)
T ss_dssp TTTCSEEEEEC-CTTHHHHHHHHHHHHHHHTTCCC-----EEEEE---ECTT-CSCHHHHHHT--TCCTTTT---CEEEH
T ss_pred hcCCCEEEEEe-EhHHHHHHHHHHHhcccccCCCC-----EEEEE---eCCc-hhhHHHHHHC--CCEEecC---CCCCH
Confidence 34337999999 599999999999987 65 24332 1222 2222233221 1100000 01246
Q ss_pred ccccCCCcEEEEeC
Q 015897 167 YELFEDAEWALLIG 180 (398)
Q Consensus 167 ~eal~dADiViita 180 (398)
.+++++||+||++.
T Consensus 116 aEAa~~ADVVILaV 129 (525)
T 3fr7_A 116 WETVSGSDLVLLLI 129 (525)
T ss_dssp HHHHHHCSEEEECS
T ss_pred HHHHhcCCEEEECC
Confidence 78999999999985
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.028 Score=52.28 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHH-----HHHHhhhcCCCcceEE-EecCccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-----AMELEDSLFPLLREVK-IGINPYE 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~-----a~DL~d~~~~~~~~v~-i~~~~~e 168 (398)
+.++|.|+||+|.||.+++..|+..|. .|.+ . +++.+.+... ..|+.+.. .+. ......+
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~Dv~d~~-----~v~~~~~~~~~ 92 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY-----RVVA--T--SRSIKPSADPDIHTVAGDISKPE-----TADRIVREGIE 92 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--E--ESSCCCCSSTTEEEEESCTTSHH-----HHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCChhhcccCceEEEEccCCCHH-----HHHHHHHHHHH
Confidence 346899999999999999999999875 2433 2 4433221100 00100000 000 0000112
Q ss_pred ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 al~dADiViitag~~rk~g---~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 93 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS 155 (260)
T 3un1_A 93 RFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ--GSGHIVSITT 155 (260)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEEec
Confidence 3347899999988753211 121 233455543 445555556663 4677777764
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.23 Score=46.99 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+|+||+|+||+|.+|+.++..+...+- +.|.-. +|++..... ..|+.+.. .....+.++.+..+.++++|
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~------~eLv~~-~d~~~~~~~--G~d~gel~-g~~~gv~v~~dl~~ll~~~D 75 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPD------ATLVGA-LDRTGSPQL--GQDAGAFL-GKQTGVALTDDIERVCAEAD 75 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTT------EEEEEE-BCCTTCTTT--TSBTTTTT-TCCCSCBCBCCHHHHHHHCS
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EEecCcccc--cccHHHHh-CCCCCceecCCHHHHhcCCC
Confidence 478999999889999999998887542 222111 355432211 12222211 11123445556667788999
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+||-..
T Consensus 76 VVIDfT 81 (272)
T 4f3y_A 76 YLIDFT 81 (272)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 988753
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.23 Score=46.22 Aligned_cols=115 Identities=11% Similarity=0.042 Sum_probs=61.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHH----HHHhhhcCCCcceEE-EecCccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA----MELEDSLFPLLREVK-IGINPYE 168 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a----~DL~d~~~~~~~~v~-i~~~~~e 168 (398)
.+.++|.|+||+|.||.+++..|+..|. .|.+ . +++++.+.+.+ .|+.+.. .+. ......+
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~Dv~~~~-----~v~~~~~~~~~ 77 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGA-----KVVS--V--SLDEKSDVNVSDHFKIDVTNEE-----EVKEAVEKTTK 77 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCC--CTTSSEEEECCTTCHH-----HHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCchhccCceeEEEecCCCHH-----HHHHHHHHHHH
Confidence 3456899999999999999999999875 2433 2 44433321100 0100000 000 0001122
Q ss_pred ccCCCcEEEEeCCCCCC-CC--Cch---hhhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRG-PG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk-~g--~~r---~dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+...|++|..+|.... +- .+. ...+..|. .+.+.+.+.+.+. ..+.||+++--
T Consensus 78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 141 (269)
T 3vtz_A 78 KYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI--GHGSIINIASV 141 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 33478999999886532 21 121 12344553 3455566666654 46778887754
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.15 Score=51.47 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+|+| .|.||..++..|...|. .|.. + |++..++....++ .+ .. .+..+++++||+
T Consensus 211 GktVgIiG-~G~IG~~vA~~Lka~Ga-----~Viv--~--D~~p~~a~~A~~~------G~----~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 211 GKTACVCG-YGDVGKGCAAALRGFGA-----RVVV--T--EVDPINALQAAME------GY----QV-LLVEDVVEEAHI 269 (436)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHT------TC----EE-CCHHHHTTTCSE
T ss_pred CCEEEEEe-eCHHHHHHHHHHHHCCC-----EEEE--E--CCChhhhHHHHHh------CC----ee-cCHHHHHhhCCE
Confidence 46999999 59999999999987764 2433 3 5555443311111 11 11 357889999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch-hHHHHHHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN-TNALICLKN 235 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d-~~t~~~~k~ 235 (398)
|+.+.+...- .++ ..+... .++++|++++++.. +-...+.+.
T Consensus 270 Vilt~gt~~i--I~~---------------e~l~~M-K~gAIVINvgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 270 FVTTTGNDDI--ITS---------------EHFPRM-RDDAIVCNIGHFDTEIQVAWLKAN 312 (436)
T ss_dssp EEECSSCSCS--BCT---------------TTGGGC-CTTEEEEECSSSGGGBCHHHHHHH
T ss_pred EEECCCCcCc--cCH---------------HHHhhc-CCCcEEEEeCCCCCccCHHHHHhh
Confidence 9986543211 010 123333 68999999998843 333334333
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.85 Score=38.57 Aligned_cols=111 Identities=13% Similarity=-0.032 Sum_probs=61.9
Q ss_pred hhhccCCCEEEEEcCC---CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc
Q 015897 90 TKSWKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP 166 (398)
Q Consensus 90 ~~~~~~~~KI~IiGA~---G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~ 166 (398)
.+.+.++.+|+||||+ |.+|+.++..|...|. .| + ++|.+. .++. .+.++.+.
T Consensus 16 ~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~-----~v----~--~Vnp~~-----~~i~--------G~~~y~sl 71 (144)
T 2d59_A 16 REILTRYKKIALVGASPKPERDANIVMKYLLEHGY-----DV----Y--PVNPKY-----EEVL--------GRKCYPSV 71 (144)
T ss_dssp HHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC-----EE----E--EECTTC-----SEET--------TEECBSSG
T ss_pred HHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCC-----EE----E--EECCCC-----CeEC--------CeeccCCH
Confidence 3445447899999976 7899999999888765 12 3 344332 1111 22333334
Q ss_pred ccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEE
Q 015897 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (398)
Q Consensus 167 ~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig 245 (398)
.+.-...|+++++.. .+...++++.+.+. ..+++++..+-...-+...+.+ . ++ +++|
T Consensus 72 ~~l~~~vDlvvi~vp----------------~~~~~~vv~~~~~~-gi~~i~~~~g~~~~~l~~~a~~-~-Gi--~vvG 129 (144)
T 2d59_A 72 LDIPDKIEVVDLFVK----------------PKLTMEYVEQAIKK-GAKVVWFQYNTYNREASKKADE-A-GL--IIVA 129 (144)
T ss_dssp GGCSSCCSEEEECSC----------------HHHHHHHHHHHHHH-TCSEEEECTTCCCHHHHHHHHH-T-TC--EEEE
T ss_pred HHcCCCCCEEEEEeC----------------HHHHHHHHHHHHHc-CCCEEEECCCchHHHHHHHHHH-c-CC--EEEc
Confidence 444457999999742 34555556555554 4555543333233334444433 2 44 5665
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.032 Score=53.78 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (398)
.+++||+|||+ |.+|..++..|...+-+ +++ .+ .|++.++++..+..+ +. ...+++..+.+.
T Consensus 3 m~~~rigiiG~-G~ig~~~~~~l~~~~~~----~~~-av--~d~~~~~~~~~a~~~-----~~---~~~~~~~~~ll~~~ 66 (329)
T 3evn_A 3 LSKVRYGVVST-AKVAPRFIEGVRLAGNG----EVV-AV--SSRTLESAQAFANKY-----HL---PKAYDKLEDMLADE 66 (329)
T ss_dssp --CEEEEEEBC-CTTHHHHHHHHHHHCSE----EEE-EE--ECSCSSTTCC---CC-----CC---SCEESCHHHHHTCT
T ss_pred CCceEEEEEec-hHHHHHHHHHHHhCCCc----EEE-EE--EcCCHHHHHHHHHHc-----CC---CcccCCHHHHhcCC
Confidence 45789999995 99999998888765321 122 12 366666654333221 11 113445556666
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
+.|+|+++.
T Consensus 67 ~~D~V~i~t 75 (329)
T 3evn_A 67 SIDVIYVAT 75 (329)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEECC
Confidence 799999874
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.11 Score=49.68 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=41.1
Q ss_pred ccCCCEEEEEcCCCchHHH-HHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-
Q 015897 93 WKKMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF- 170 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~-la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal- 170 (398)
.++++||+|||+ |.+|.. ++..|....-+ +++ .+ .|++.++++..+..+. . . . .++++++
T Consensus 2 ~m~~~~vgiiG~-G~~g~~~~~~~l~~~~~~----~lv-av--~d~~~~~~~~~~~~~g-----~--~--~-~~~~~~l~ 63 (319)
T 1tlt_A 2 SLKKLRIGVVGL-GGIAQKAWLPVLAAASDW----TLQ-GA--WSPTRAKALPICESWR-----I--P--Y-ADSLSSLA 63 (319)
T ss_dssp ---CEEEEEECC-STHHHHTHHHHHHSCSSE----EEE-EE--ECSSCTTHHHHHHHHT-----C--C--B-CSSHHHHH
T ss_pred CCCcceEEEECC-CHHHHHHHHHHHHhCCCe----EEE-EE--ECCCHHHHHHHHHHcC-----C--C--c-cCcHHHhh
Confidence 345689999995 999986 77777653211 122 12 3667677765544321 1 1 2 2344555
Q ss_pred CCCcEEEEeC
Q 015897 171 EDAEWALLIG 180 (398)
Q Consensus 171 ~dADiViita 180 (398)
.++|+|+++.
T Consensus 64 ~~~D~V~i~t 73 (319)
T 1tlt_A 64 ASCDAVFVHS 73 (319)
T ss_dssp TTCSEEEECS
T ss_pred cCCCEEEEeC
Confidence 6899999874
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.062 Score=51.08 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~-la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
++||+|||+ |.+|.. ++..|...+-+ +++- + .|++.++++..+.++. . . .+++..+.++++|
T Consensus 6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~----~l~a-v--~d~~~~~~~~~a~~~~-----~--~--~~~~~~~ll~~~D 68 (308)
T 3uuw_A 6 NIKMGMIGL-GSIAQKAYLPILTKSERF----EFVG-A--FTPNKVKREKICSDYR-----I--M--PFDSIESLAKKCD 68 (308)
T ss_dssp CCEEEEECC-SHHHHHHTHHHHTSCSSS----EEEE-E--ECSCHHHHHHHHHHHT-----C--C--BCSCHHHHHTTCS
T ss_pred cCcEEEEec-CHHHHHHHHHHHHhCCCe----EEEE-E--ECCCHHHHHHHHHHcC-----C--C--CcCCHHHHHhcCC
Confidence 579999995 999995 77777553221 2321 2 3777787776665432 1 1 1345566677999
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+|+++.
T Consensus 69 ~V~i~t 74 (308)
T 3uuw_A 69 CIFLHS 74 (308)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999874
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.12 Score=50.27 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=44.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (398)
.+++||+|||+ |.+|..++..|...+-+ +++ .+ .|++.++++..+..+. .......+.+..+.++
T Consensus 4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~----~lv-~v--~d~~~~~~~~~a~~~~-----~~~~~~~~~~~~~ll~~~ 70 (362)
T 1ydw_A 4 ETQIRIGVMGC-ADIARKVSRAIHLAPNA----TIS-GV--ASRSLEKAKAFATANN-----YPESTKIHGSYESLLEDP 70 (362)
T ss_dssp --CEEEEEESC-CTTHHHHHHHHHHCTTE----EEE-EE--ECSSHHHHHHHHHHTT-----CCTTCEEESSHHHHHHCT
T ss_pred CCceEEEEECc-hHHHHHHHHHHhhCCCc----EEE-EE--EcCCHHHHHHHHHHhC-----CCCCCeeeCCHHHHhcCC
Confidence 34689999995 99999988887764321 122 12 3677777665554322 1112334444455554
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
++|+|+++.
T Consensus 71 ~~D~V~i~t 79 (362)
T 1ydw_A 71 EIDALYVPL 79 (362)
T ss_dssp TCCEEEECC
T ss_pred CCCEEEEcC
Confidence 599999874
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.049 Score=49.99 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHH---HHHHhhhcCCCcceEE-EecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVK-IGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~---a~DL~d~~~~~~~~v~-i~~~~~eal~ 171 (398)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++.. ..|+.+.. .+. ......+.+.
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~D~~~~~-----~~~~~~~~~~~~~g 80 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGH-----KVAV--T--HRGSGAPKGLFGVEVDVTDSD-----AVDRAFTAVEEHQG 80 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSSCCCTTSEEEECCTTCHH-----HHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCChHHHHHhcCeeccCCCHH-----HHHHHHHHHHHHcC
Confidence 45899999999999999999999874 2433 2 4443332210 01111100 000 0000112234
Q ss_pred CCcEEEEeCCCCCC-C--CCch---hhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 172 DAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 172 dADiViitag~~rk-~--g~~r---~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
..|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.||+++--.
T Consensus 81 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 142 (247)
T 1uzm_A 81 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN--KFGRMIFIGSVS 142 (247)
T ss_dssp SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEECCHh
Confidence 67999999886532 1 1221 234555543 445555555553 457888887553
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.3 Score=45.62 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc------c
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------F 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------l 170 (398)
+.+.|+||++.||..++..|+..|- .|++ . |++.+ +..+.++++.. .....+..-..++++ .
T Consensus 10 KvalVTGas~GIG~aiA~~la~~Ga-----~Vvi--~--~r~~~--~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~ 77 (247)
T 4hp8_A 10 RKALVTGANTGLGQAIAVGLAAAGA-----EVVC--A--ARRAP--DETLDIIAKDG-GNASALLIDFADPLAAKDSFTD 77 (247)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCC--HHHHHHHHHTT-CCEEEEECCTTSTTTTTTSSTT
T ss_pred CEEEEeCcCCHHHHHHHHHHHHcCC-----EEEE--E--eCCcH--HHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHh
Confidence 4677779999999999999999885 2544 3 44322 11222233221 100001000012222 2
Q ss_pred CCCcEEEEeCCCCC-CCC--Cchh---hhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~r-k~g--~~r~---dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..-|++|..+|..+ .+- ++.. ..+..|+. ..+..++.+.+. ...|.||+++-
T Consensus 78 g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~-g~~G~IVnisS 139 (247)
T 4hp8_A 78 AGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAK-GRSGKVVNIAS 139 (247)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred CCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 34699999888753 332 2222 23555533 466777777765 46788888874
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.16 Score=48.02 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC-CCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~-~~~~~v~i~~~~~eal~dAD 174 (398)
.+++.|+|| |.+|.+++..|+..| . |.+ .+++.++++..+.++..... .....+.+. +..+.+.++|
T Consensus 128 ~k~vlV~Ga-GgiG~aia~~L~~~G--~----V~v----~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D 195 (287)
T 1nvt_A 128 DKNIVIYGA-GGAARAVAFELAKDN--N----III----ANRTVEKAEALAKEIAEKLNKKFGEEVKFS-GLDVDLDGVD 195 (287)
T ss_dssp SCEEEEECC-SHHHHHHHHHHTSSS--E----EEE----ECSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CTTCCCTTCC
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCC--C----EEE----EECCHHHHHHHHHHHhhhcccccceeEEEe-eHHHhhCCCC
Confidence 468999996 899999999998876 2 554 37777888777776653210 000122232 2367789999
Q ss_pred EEEEeCCCCCC
Q 015897 175 WALLIGAKPRG 185 (398)
Q Consensus 175 iViitag~~rk 185 (398)
+||.+++....
T Consensus 196 ilVn~ag~~~~ 206 (287)
T 1nvt_A 196 IIINATPIGMY 206 (287)
T ss_dssp EEEECSCTTCT
T ss_pred EEEECCCCCCC
Confidence 99999876543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.063 Score=51.90 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...+|+||| +|.+|...+..|....-+. .|.+ + |++ +++..+.++.+.. + .++... +..+++++||
T Consensus 120 ~~~~v~iIG-aG~~a~~~~~al~~~~~~~---~V~v--~--~r~--~a~~la~~l~~~~-g--~~~~~~-~~~eav~~aD 185 (313)
T 3hdj_A 120 RSSVLGLFG-AGTQGAEHAAQLSARFALE---AILV--H--DPY--ASPEILERIGRRC-G--VPARMA-APADIAAQAD 185 (313)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCCC---EEEE--E--CTT--CCHHHHHHHHHHH-T--SCEEEC-CHHHHHHHCS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHHhCCCc---EEEE--E--CCc--HHHHHHHHHHHhc-C--CeEEEe-CHHHHHhhCC
Confidence 457999999 5999999998887632222 2443 4 555 5555666665422 1 234455 7788999999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||.+-.
T Consensus 186 IVi~aT~ 192 (313)
T 3hdj_A 186 IVVTATR 192 (313)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998643
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.058 Score=49.67 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.+++.|+||+|.||.+++..|+..|.
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G~ 34 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAGA 34 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 446899999999999999999999875
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.58 Score=39.50 Aligned_cols=112 Identities=13% Similarity=-0.019 Sum_probs=63.1
Q ss_pred hhccCCCEEEEEcCC---CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc
Q 015897 91 KSWKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY 167 (398)
Q Consensus 91 ~~~~~~~KI~IiGA~---G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ 167 (398)
+.+.++.+|+||||+ |.+|+.++..|...|. .+ + ++|..+.. .++. .+.++.+..
T Consensus 8 ~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~-----~v----~--~vnp~~~~---~~i~--------G~~~~~sl~ 65 (140)
T 1iuk_A 8 AYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY-----RV----L--PVNPRFQG---EELF--------GEEAVASLL 65 (140)
T ss_dssp HHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC-----EE----E--EECGGGTT---SEET--------TEECBSSGG
T ss_pred HHHcCCCEEEEECCCCCCCChHHHHHHHHHHCCC-----EE----E--EeCCCccc---CcCC--------CEEecCCHH
Confidence 345457899999976 7899999999988775 22 3 34444211 1111 123333334
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEE
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig 245 (398)
+.-...|+++++.. .+...++.+++.+. ..+++++..+-...-+..++.+. ++ +++|
T Consensus 66 el~~~vDlavi~vp----------------~~~~~~v~~~~~~~-gi~~i~~~~g~~~~~~~~~a~~~--Gi--r~vg 122 (140)
T 1iuk_A 66 DLKEPVDILDVFRP----------------PSALMDHLPEVLAL-RPGLVWLQSGIRHPEFEKALKEA--GI--PVVA 122 (140)
T ss_dssp GCCSCCSEEEECSC----------------HHHHTTTHHHHHHH-CCSCEEECTTCCCHHHHHHHHHT--TC--CEEE
T ss_pred HCCCCCCEEEEEeC----------------HHHHHHHHHHHHHc-CCCEEEEcCCcCHHHHHHHHHHc--CC--EEEc
Confidence 44457999998742 23444455555554 45665554444444444544432 45 6776
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.23 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
+||+|+||+|.+|..++..|...+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p 32 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHP 32 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCS
T ss_pred ceEEEECcCCHHHHHHHHHHhcCC
Confidence 699999999999999999887654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.05 Score=52.99 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| .|.+|..++..+...|. .|.. + |++.+. + .+.++ . +.. .+..+.+++||+
T Consensus 150 g~~vgIIG-~G~iG~~iA~~l~~~G~-----~V~~--~--d~~~~~-~-~~~~~-----g----~~~-~~l~~~l~~aDv 207 (334)
T 2dbq_A 150 GKTIGIIG-LGRIGQAIAKRAKGFNM-----RILY--Y--SRTRKE-E-VEREL-----N----AEF-KPLEDLLRESDF 207 (334)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSSCCH-H-HHHHH-----C----CEE-CCHHHHHHHCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhCCC-----EEEE--E--CCCcch-h-hHhhc-----C----ccc-CCHHHHHhhCCE
Confidence 46999999 59999999999987664 2432 4 555443 2 22221 1 122 345677899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+++..
T Consensus 208 Vil~vp 213 (334)
T 2dbq_A 208 VVLAVP 213 (334)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999754
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.086 Score=50.96 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (398)
|+||+|||+ |.+|..++..|...+-+ .++ .+ .|++.++++..+..+.. ...+++..+.++ ++
T Consensus 2 ~~rvgiIG~-G~~g~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~~~ 65 (344)
T 3ezy_A 2 SLRIGVIGL-GRIGTIHAENLKMIDDA----ILY-AI--SDVREDRLREMKEKLGV--------EKAYKDPHELIEDPNV 65 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHGGGSTTE----EEE-EE--ECSCHHHHHHHHHHHTC--------SEEESSHHHHHHCTTC
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhCCCc----EEE-EE--ECCCHHHHHHHHHHhCC--------CceeCCHHHHhcCCCC
Confidence 469999995 99999988887663211 122 12 36777777655544321 123455556666 79
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++.
T Consensus 66 D~V~i~t 72 (344)
T 3ezy_A 66 DAVLVCS 72 (344)
T ss_dssp CEEEECS
T ss_pred CEEEEcC
Confidence 9999864
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.09 Score=51.04 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=44.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc--C
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--E 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~ 171 (398)
.+++||+|||+ |.+|...+..|...+-+ +++ .+ .|++.++++..+.++. +..+++..+.+ .
T Consensus 3 ~~~~~vgiiG~-G~~g~~~~~~l~~~~~~----~lv-av--~d~~~~~~~~~~~~~g---------~~~~~~~~~~l~~~ 65 (354)
T 3db2_A 3 YNPVGVAAIGL-GRWAYVMADAYTKSEKL----KLV-TC--YSRTEDKREKFGKRYN---------CAGDATMEALLARE 65 (354)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHTTCSSE----EEE-EE--ECSSHHHHHHHHHHHT---------CCCCSSHHHHHHCS
T ss_pred CCcceEEEEcc-CHHHHHHHHHHHhCCCc----EEE-EE--ECCCHHHHHHHHHHcC---------CCCcCCHHHHhcCC
Confidence 34679999995 99999988887654211 222 12 3677777776554431 11234455566 5
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
+.|+|+++.
T Consensus 66 ~~D~V~i~t 74 (354)
T 3db2_A 66 DVEMVIITV 74 (354)
T ss_dssp SCCEEEECS
T ss_pred CCCEEEEeC
Confidence 799999874
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.13 Score=48.60 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..|+.|+|| |.+|.+++..|+..| . .|.+ .+++.++++..+ ++. +... .++++.++|+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~----~v~V----~nRt~~ka~~la-~~~---------~~~~--~~~~l~~~Di 175 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-L----QVSV----LNRSSRGLDFFQ-RLG---------CDCF--MEPPKSAFDL 175 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-C----EEEE----ECSSCTTHHHHH-HHT---------CEEE--SSCCSSCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-C----EEEE----EeCCHHHHHHHH-HCC---------CeEe--cHHHhccCCE
Confidence 469999995 999999999999887 2 2554 378888887777 553 1111 2444569999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
||.+-.
T Consensus 176 VInaTp 181 (269)
T 3phh_A 176 IINATS 181 (269)
T ss_dssp EEECCT
T ss_pred EEEccc
Confidence 998743
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=93.50 E-value=0.097 Score=51.27 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
.++|+||| .|.||..++..+. ..|. .|.. + |++.+..+. +.++ . +....+..+.+++||
T Consensus 163 g~~vgIIG-~G~IG~~vA~~l~~~~G~-----~V~~--~--d~~~~~~~~-~~~~-----g----~~~~~~l~ell~~aD 222 (348)
T 2w2k_A 163 GHVLGAVG-LGAIQKEIARKAVHGLGM-----KLVY--Y--DVAPADAET-EKAL-----G----AERVDSLEELARRSD 222 (348)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCC-----EEEE--E--CSSCCCHHH-HHHH-----T----CEECSSHHHHHHHCS
T ss_pred CCEEEEEE-ECHHHHHHHHHHHHhcCC-----EEEE--E--CCCCcchhh-Hhhc-----C----cEEeCCHHHHhccCC
Confidence 46999999 5999999999988 6554 2432 3 555444331 1111 1 122234567789999
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+|+++.
T Consensus 223 vVil~v 228 (348)
T 2w2k_A 223 CVSVSV 228 (348)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999975
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.23 Score=46.56 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc--CCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~dA 173 (398)
.+++.|+|| |.+|..++..|+..|. .|.+ .+++.++++..+.++... . .+.. . +.+++ .++
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~G~-----~V~v----~~R~~~~~~~la~~~~~~--~---~~~~-~-~~~~~~~~~~ 181 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSLDC-----AVTI----TNRTVSRAEELAKLFAHT--G---SIQA-L-SMDELEGHEF 181 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHTGGG--S---SEEE-C-CSGGGTTCCC
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHhhcc--C---CeeE-e-cHHHhccCCC
Confidence 468999996 9999999999998872 2554 377878887777665431 1 1222 1 22334 489
Q ss_pred cEEEEeCCCC
Q 015897 174 EWALLIGAKP 183 (398)
Q Consensus 174 DiViitag~~ 183 (398)
|+||.+.+.+
T Consensus 182 DivVn~t~~~ 191 (271)
T 1nyt_A 182 DLIINATSSG 191 (271)
T ss_dssp SEEEECCSCG
T ss_pred CEEEECCCCC
Confidence 9999987754
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.042 Score=53.41 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+||| .|.+|..++..+...|. .|.. + |++.++.+. + ... .+... +..+.+++||+
T Consensus 155 g~~vgIIG-~G~iG~~iA~~l~~~G~-----~V~~--~--d~~~~~~~~-~---~~~------g~~~~-~l~e~l~~aDv 213 (330)
T 2gcg_A 155 QSTVGIIG-LGRIGQAIARRLKPFGV-----QRFL--Y--TGRQPRPEE-A---AEF------QAEFV-STPELAAQSDF 213 (330)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-----CEEE--E--ESSSCCHHH-H---HTT------TCEEC-CHHHHHHHCSE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE--E--CCCCcchhH-H---Hhc------CceeC-CHHHHHhhCCE
Confidence 36999999 59999999999887664 2443 3 555443331 1 111 12222 45677899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+++..
T Consensus 214 Vi~~vp 219 (330)
T 2gcg_A 214 IVVACS 219 (330)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999754
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.16 Score=51.35 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-.+|+|+|+ |.||..++..+...|. .|.. + |+++.++....++ .+ .. .+..+++++||+
T Consensus 220 GktV~ViG~-G~IGk~vA~~Lra~Ga-----~Viv--~--D~dp~ra~~A~~~------G~----~v-~~Leeal~~ADI 278 (435)
T 3gvp_A 220 GKQVVVCGY-GEVGKGCCAALKAMGS-----IVYV--T--EIDPICALQACMD------GF----RL-VKLNEVIRQVDI 278 (435)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHT------TC----EE-CCHHHHTTTCSE
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCC-----EEEE--E--eCChhhhHHHHHc------CC----Ee-ccHHHHHhcCCE
Confidence 469999995 9999999999887664 2332 3 5555443311111 11 11 246789999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|+.+.|.+. ++. .+.+... .+++++++++.+-
T Consensus 279 Vi~atgt~~---------------lI~--~e~l~~M-K~gailINvgrg~ 310 (435)
T 3gvp_A 279 VITCTGNKN---------------VVT--REHLDRM-KNSCIVCNMGHSN 310 (435)
T ss_dssp EEECSSCSC---------------SBC--HHHHHHS-CTTEEEEECSSTT
T ss_pred EEECCCCcc---------------cCC--HHHHHhc-CCCcEEEEecCCC
Confidence 999744221 111 0122232 5899999999874
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.024 Score=57.55 Aligned_cols=72 Identities=10% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC----cccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal~ 171 (398)
+++|.|+| +|.+|.+++..|+..+. .|.+ .|++.++++..+.++.. ...+..... ..+.++
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~-----~V~v----~~R~~~~a~~la~~~~~-----~~~~~~Dv~d~~~l~~~l~ 67 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGI-----KVTV----ACRTLESAKKLSAGVQH-----STPISLDVNDDAALDAEVA 67 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTC-----EEEE----EESSHHHHHHTTTTCTT-----EEEEECCTTCHHHHHHHHT
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcC-----EEEE----EECCHHHHHHHHHhcCC-----ceEEEeecCCHHHHHHHHc
Confidence 56899999 59999999999997663 2543 36666655433322210 001111111 225678
Q ss_pred CCcEEEEeCCC
Q 015897 172 DAEWALLIGAK 182 (398)
Q Consensus 172 dADiViitag~ 182 (398)
++|+||.+++.
T Consensus 68 ~~DvVIn~a~~ 78 (450)
T 1ff9_A 68 KHDLVISLIPY 78 (450)
T ss_dssp TSSEEEECCC-
T ss_pred CCcEEEECCcc
Confidence 99999998764
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.48 Score=43.24 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~ 32 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGA 32 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.023 Score=57.86 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----ccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYE 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~e 168 (398)
+.|||.|+|| |.+|+++|..|...+. .+++ +|.++++++....++ +. .+..+. + ...
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~-----~v~v----Id~d~~~~~~~~~~~-~~------~~i~Gd~~~~~~L~~A 64 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENN-----DITI----VDKDGDRLRELQDKY-DL------RVVNGHASHPDVLHEA 64 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTE-----EEEE----EESCHHHHHHHHHHS-SC------EEEESCTTCHHHHHHH
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHhc-Cc------EEEEEcCCCHHHHHhc
Confidence 3589999995 9999999999877654 4554 588888876444332 11 111111 1 234
Q ss_pred ccCCCcEEEEe
Q 015897 169 LFEDAEWALLI 179 (398)
Q Consensus 169 al~dADiViit 179 (398)
.+++||.+|.+
T Consensus 65 gi~~ad~~ia~ 75 (461)
T 4g65_A 65 GAQDADMLVAV 75 (461)
T ss_dssp TTTTCSEEEEC
T ss_pred CCCcCCEEEEE
Confidence 57899998864
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.1 Score=50.23 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=44.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHH-hcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~- 171 (398)
.+++||+|||+ |.+|...+..|. ...-+ +++. + .|+++++++..+.++ +. . ..+.+..+.++
T Consensus 6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~----~~va-v--~d~~~~~~~~~a~~~-----g~--~-~~~~~~~~~l~~ 69 (346)
T 3cea_A 6 RKPLRAAIIGL-GRLGERHARHLVNKIQGV----KLVA-A--CALDSNQLEWAKNEL-----GV--E-TTYTNYKDMIDT 69 (346)
T ss_dssp CCCEEEEEECC-STTHHHHHHHHHHTCSSE----EEEE-E--ECSCHHHHHHHHHTT-----CC--S-EEESCHHHHHTT
T ss_pred CCcceEEEEcC-CHHHHHHHHHHHhcCCCc----EEEE-E--ecCCHHHHHHHHHHh-----CC--C-cccCCHHHHhcC
Confidence 34689999995 999999888877 43211 1221 2 367777766544322 11 1 23444455565
Q ss_pred -CCcEEEEeCC
Q 015897 172 -DAEWALLIGA 181 (398)
Q Consensus 172 -dADiViitag 181 (398)
++|+|+++..
T Consensus 70 ~~~D~V~i~tp 80 (346)
T 3cea_A 70 ENIDAIFIVAP 80 (346)
T ss_dssp SCCSEEEECSC
T ss_pred CCCCEEEEeCC
Confidence 6999999753
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.14 Score=49.78 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=43.2
Q ss_pred cCCCEEEEEcCCCchHH-HHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-
Q 015897 94 KKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~-~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~- 171 (398)
++++||+||| +|.+|. .++..|...+-+ +++ .+ .|++.++++..+..+. +...++..+.++
T Consensus 25 m~~~rigiIG-~G~~g~~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~a~~~g---------~~~~~~~~~ll~~ 87 (350)
T 3rc1_A 25 ANPIRVGVIG-CADIAWRRALPALEAEPLT----EVT-AI--ASRRWDRAKRFTERFG---------GEPVEGYPALLER 87 (350)
T ss_dssp -CCEEEEEES-CCHHHHHTHHHHHHHCTTE----EEE-EE--EESSHHHHHHHHHHHC---------SEEEESHHHHHTC
T ss_pred CCceEEEEEc-CcHHHHHHHHHHHHhCCCe----EEE-EE--EcCCHHHHHHHHHHcC---------CCCcCCHHHHhcC
Confidence 4468999999 599998 688887765321 122 12 3677777765554421 122344455554
Q ss_pred -CCcEEEEeC
Q 015897 172 -DAEWALLIG 180 (398)
Q Consensus 172 -dADiViita 180 (398)
+.|+|+++.
T Consensus 88 ~~~D~V~i~t 97 (350)
T 3rc1_A 88 DDVDAVYVPL 97 (350)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEECC
Confidence 589999874
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.12 Score=49.38 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=42.6
Q ss_pred CCEEEEEcCCCchHH-HHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-CCC
Q 015897 96 MVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~-~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (398)
++||+|||+ |++|. .++..|...+- +.+.+ .|++.++++..+.++. . + ....+..+.+ .++
T Consensus 2 ~~~igiIG~-G~ig~~~~~~~l~~~~~------~~l~v--~d~~~~~~~~~a~~~g--~-~-----~~~~~~~~~l~~~~ 64 (323)
T 1xea_A 2 SLKIAMIGL-GDIAQKAYLPVLAQWPD------IELVL--CTRNPKVLGTLATRYR--V-S-----ATCTDYRDVLQYGV 64 (323)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTT------EEEEE--ECSCHHHHHHHHHHTT--C-C-----CCCSSTTGGGGGCC
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCC------ceEEE--EeCCHHHHHHHHHHcC--C-C-----ccccCHHHHhhcCC
Confidence 469999995 99998 48887765321 22323 4777777765554321 1 1 0123455666 789
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++.
T Consensus 65 D~V~i~t 71 (323)
T 1xea_A 65 DAVMIHA 71 (323)
T ss_dssp SEEEECS
T ss_pred CEEEEEC
Confidence 9999975
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.32 Score=49.67 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=68.0
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchh---hHHHHHHHHhhhcCCCcceEEEe-cC--
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLFPLLREVKIG-IN-- 165 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~---~l~g~a~DL~d~~~~~~~~v~i~-~~-- 165 (398)
.|++..+|.|+||+|.+|.+++..|+..|.- .+.+ + +++.. .++....+|+... .++.+. .|
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~----~vvl--~--~R~~~~~~~~~~l~~~l~~~g----~~v~~~~~Dv~ 289 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAP----HLLL--V--SRSGPDADGAGELVAELEALG----ARTTVAACDVT 289 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCS----EEEE--E--ESSGGGSTTHHHHHHHHHHTT----CEEEEEECCTT
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCCC----EEEE--E--cCCCCCcHHHHHHHHHHHhcC----CEEEEEEeCCC
Confidence 3556689999999999999999999988751 1333 3 44432 3444555554321 122221 11
Q ss_pred cc----cccCC------CcEEEEeCCCCCCC---CCchh---hhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 PY----ELFED------AEWALLIGAKPRGP---GMERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ~~----eal~d------ADiViitag~~rk~---g~~r~---dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+. +.++. .|.||.++|..... .++.. ..+..|+.-...+.+.+.+. +.+.+|++|
T Consensus 290 d~~~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~--~~~~~V~~S 360 (486)
T 2fr1_A 290 DRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFS 360 (486)
T ss_dssp CHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC--CCCEEEEEc
Confidence 11 22333 49999999875421 11222 34556776677777777663 445666665
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.18 Score=47.31 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc-C-C
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-E-D 172 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~-d 172 (398)
+.++|.|+|| |.+|..++..|+..| . .|.+ .+++.++++..+.++... . .+... +.+++ + +
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G-~----~v~v----~~R~~~~a~~l~~~~~~~--~---~~~~~--~~~~~~~~~ 180 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQ-Q----NIVL----ANRTFSKTKELAERFQPY--G---NIQAV--SMDSIPLQT 180 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT-C----EEEE----EESSHHHHHHHHHHHGGG--S---CEEEE--EGGGCCCSC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-C----EEEE----EECCHHHHHHHHHHcccc--C---CeEEe--eHHHhccCC
Confidence 3469999996 999999999999887 2 2554 378888887777666431 1 12221 23445 3 8
Q ss_pred CcEEEEeCCCCC
Q 015897 173 AEWALLIGAKPR 184 (398)
Q Consensus 173 ADiViitag~~r 184 (398)
+|+||.+.+.+.
T Consensus 181 ~DivIn~t~~~~ 192 (272)
T 1p77_A 181 YDLVINATSAGL 192 (272)
T ss_dssp CSEEEECCCC--
T ss_pred CCEEEECCCCCC
Confidence 999999876543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.15 Score=49.76 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (398)
+++||+|||+ |.+|...+..|. ..+-+ +++ .+ .|++.++++..+..+. . ....+++..+.+.
T Consensus 22 ~~~rvgiIG~-G~~g~~~~~~l~~~~~~~----~lv-av--~d~~~~~~~~~a~~~g-----~--~~~~~~~~~~ll~~~ 86 (357)
T 3ec7_A 22 MTLKAGIVGI-GMIGSDHLRRLANTVSGV----EVV-AV--CDIVAGRAQAALDKYA-----I--EAKDYNDYHDLINDK 86 (357)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHTCTTE----EEE-EE--ECSSTTHHHHHHHHHT-----C--CCEEESSHHHHHHCT
T ss_pred CeeeEEEECC-cHHHHHHHHHHHhhCCCc----EEE-EE--EeCCHHHHHHHHHHhC-----C--CCeeeCCHHHHhcCC
Confidence 3579999995 999999988887 33211 122 12 3677777776665432 0 1234455555555
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
+.|+|+++.
T Consensus 87 ~~D~V~i~t 95 (357)
T 3ec7_A 87 DVEVVIITA 95 (357)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEEcC
Confidence 589999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 398 | ||||
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 6e-68 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 5e-43 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 2e-41 | |
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 1e-39 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 4e-32 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 3e-29 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 1e-21 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 4e-20 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 1e-18 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 3e-18 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 1e-17 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 3e-17 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 5e-17 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 2e-16 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 2e-16 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 2e-16 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 6e-16 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 2e-15 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 2e-15 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 2e-14 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 7e-14 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 2e-13 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 2e-13 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 2e-13 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 3e-13 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 3e-13 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 3e-12 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 6e-12 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 2e-11 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 7e-11 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 8e-11 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 2e-10 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 2e-10 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 4e-10 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 4e-10 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 2e-09 | |
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 8e-08 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 9e-08 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 9e-08 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 6e-06 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 3e-04 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 8e-04 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 0.004 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 210 bits (536), Expect = 6e-68
Identities = 154/175 (88%), Positives = 167/175 (95%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 60
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 61 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 120
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHAL
Sbjct: 121 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 145 bits (367), Expect = 5e-43
Identities = 87/153 (56%), Positives = 113/153 (73%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
++VKV+VVGNP NTNALI KNAP + +NF A
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 141 bits (356), Expect = 2e-41
Identities = 73/151 (48%), Positives = 94/151 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
KVIVVGNP NTN L K+APSIP +NF L
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCL 154
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 137 bits (347), Expect = 1e-39
Identities = 118/135 (87%), Positives = 126/135 (93%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
TRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWL
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
EE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNPYG
Sbjct: 61 EEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYG 120
Query: 368 IAEDIVFSMPCRSKK 382
IAEDIVFSMPCRSK
Sbjct: 121 IAEDIVFSMPCRSKG 135
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 117 bits (294), Expect = 4e-32
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV----KEIIKD 303
TRLD NRAK Q+ALK GV D V N+ IWGNHS+TQ PD +A++ E +KD
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60
Query: 304 HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 363
WL+ F T+Q+RG +IK SSA S A +I D ++ + TPEG++ S G+ ++G
Sbjct: 61 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120
Query: 364 NPYGIAEDIVFSMPCRSKK 382
N YG+ +D+++S P K
Sbjct: 121 NSYGVPDDLLYSFPVTIKD 139
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 109 bits (273), Expect = 3e-29
Identities = 59/133 (44%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
+TRLD NRAK QLA K G D++ MT+WGNHS+T PD +A ++G P E++ W
Sbjct: 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME-W 59
Query: 307 LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
E+ F T+ +RG +I+ G SSAAS A + ++ ++ TPEGDW S V + G Y
Sbjct: 60 YEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EY 118
Query: 367 GIAEDIVFSMPCR 379
GI E IV+S P
Sbjct: 119 GIPEGIVYSFPVT 131
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 88.1 bits (218), Expect = 1e-21
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 16/156 (10%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GAAG I L L G + L L GVA++L +
Sbjct: 3 VAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIA---PVTPGVAVDLSHIPTAVKI 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
+ G + E A+ L+ R PGM+R+ L ++N I + + A +
Sbjct: 56 KGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQV-AKTCPKACI 114
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
++ NP NT I A+ D+N+
Sbjct: 115 GIITNPVNTTVAIA--------AEVLKKAGVYDKNK 142
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 84.5 bits (208), Expect = 4e-20
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE 308
RLD NRA Q+A K G + + +WGNHS T D+ A+I+G VK++I D W
Sbjct: 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNR 61
Query: 309 EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGI 368
+ F T+ KRG +I G SSAAS A + +D + V T YGI
Sbjct: 62 DTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD--GSYGI 119
Query: 369 AEDIVFSMPCRSKK 382
E ++F P ++
Sbjct: 120 PEGVIFGFPVTTEN 133
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 80.3 bits (197), Expect = 1e-18
Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 3/135 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + + + GV + G H + + + + + + +K
Sbjct: 3 CNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDK 61
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
++ + + V + YG
Sbjct: 62 QDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE-TIMKNLCRVHPVSTMVKD-FYG 119
Query: 368 IAEDIVFSMPCRSKK 382
I +++ S+PC
Sbjct: 120 IKDNVFLSLPCVLND 134
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 78.5 bits (193), Expect = 3e-18
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 19/157 (12%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA+G I L L ++ L L + GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYD----IAHTPGVAADLSHIETRATV 53
Query: 159 EVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ +G + + + ++ PR PGM R L + N I A A A +
Sbjct: 54 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCPDAM 112
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
+ ++ NP N+ I A+ F + N+
Sbjct: 113 ICIISNPVNSTIPIT--------AEVFKKHGVYNPNK 141
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 77.8 bits (191), Expect = 1e-17
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 8/132 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD RA +A G+ +VS I G+ T +P ++ +
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLST---- 57
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
T IQ+ G ++K + +A+ +++ A +
Sbjct: 58 ---LTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 114
Query: 368 IAEDIVFSMPCR 379
+ FS P
Sbjct: 115 T-DCPYFSTPLL 125
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 75.6 bits (185), Expect = 3e-17
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ + GA+G + + LA + L L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTRS 57
Query: 159 EVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ I + ++++ ++ PR GM R L N +I + K + + +
Sbjct: 58 DANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--D 115
Query: 216 VKVIVVGNPCNTNALICLK 234
K+ V+ NP + L
Sbjct: 116 TKIFVITNPVDVMTYKALV 134
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.1 bits (186), Expect = 5e-17
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 4/137 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HK 305
LD R + + K GV + G H + VP + + G+ +K +
Sbjct: 3 CNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61
Query: 306 WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
++ + ++ + S A+ + + G
Sbjct: 62 KNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKG-F 120
Query: 366 YGIAEDIVFSMPCRSKK 382
+GI E++ S+PC +
Sbjct: 121 HGIKEEVFLSIPCVLGE 137
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 74.4 bits (182), Expect = 2e-16
Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 9/135 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R+ +A G +V I G+ T +P +E+
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVAD----- 56
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
T+ IQ G +++ +A+ ++ A L G
Sbjct: 57 ---LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG 113
Query: 368 IAEDIVFSMPCRSKK 382
FS P K
Sbjct: 114 Q-YARFFSQPLLLGK 127
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 74.3 bits (182), Expect = 2e-16
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++ GV ++ + G H VP + G+P+ +++ +
Sbjct: 4 LDAARFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTVAGIPISDLLPAETI--D 60
Query: 310 GFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
E + G +++ + S A A + V G YGI
Sbjct: 61 KLVERTRNGGAEIVEHLKQGS-AFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQ-YGI- 117
Query: 370 EDIVFSMPCR 379
+ +P +
Sbjct: 118 DKTFVGVPVK 127
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 74.1 bits (181), Expect = 2e-16
Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-- 305
T LD R + +A + GV V I G H ++VP + +A I G+P+ +
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59
Query: 306 ---WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 362
+ K I ++ + +S VD +++++ V +
Sbjct: 60 PLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLH----DTNRILPVSSM 115
Query: 363 GNPYGIAEDIVFSMPCRSKK 382
+ DI S+P +
Sbjct: 116 LKDFHGISDICMSVPTLLNR 135
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 72.0 bits (176), Expect = 6e-16
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I V GA G + F+LA + +A +L+ + +G A+++ +S L
Sbjct: 3 ITVIGA-GNVGATTAFRLAE-------KQLARELVLLDVVEGIPQGKALDMYESGPVGLF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ K+ G N Y +++ ++ PR PGM R LL N I E + S+N
Sbjct: 55 DTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNI-MKHSKNPI 113
Query: 218 VIVVGNPCNTNALICLKNA 236
+IVV NP + + +
Sbjct: 114 IIVVSNPLDIMTHVAWVRS 132
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 71.8 bits (175), Expect = 2e-15
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 4/137 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + +A K G+ I G H + V + + G+ ++E+ +
Sbjct: 3 CNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61
Query: 308 E--EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
E + E + + + A+ + A G
Sbjct: 62 NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG-M 120
Query: 366 YGIAEDIVFSMPCRSKK 382
YGI ++ S+PC
Sbjct: 121 YGIENEVFLSLPCILNA 137
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 70.8 bits (173), Expect = 2e-15
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
++V GAAG + + +A ++ + + G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGI-AYDS 56
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ YE ++ ++ PR PG R L N I + +L+ +
Sbjct: 57 NTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYIS 115
Query: 219 IVVGNPCNTNALICLK 234
+ NP + +
Sbjct: 116 LTTSNPVDLLNRHLYE 131
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 68.2 bits (166), Expect = 2e-14
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++AGV V M + G H VP + I+G+PV E I + +
Sbjct: 4 LDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQ- 61
Query: 310 GFTETIQKRGGLLIK-KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGI 368
E +K GG ++ S+ + A + +++++ + Y G YG+
Sbjct: 62 -IVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVL--KDKKRVMPVAAYLTGQ-YGL 117
Query: 369 AEDIVFSMPCR 379
DI F +P
Sbjct: 118 -NDIYFGVPVI 127
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 66.8 bits (162), Expect = 7e-14
Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 3/133 (2%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD +R K ++ K V V+ I G H V + G+P++E I + +
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61
Query: 310 GFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
+ ++ ++ A + + G
Sbjct: 62 ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEG--QYGH 119
Query: 370 EDIVFSMPCRSKK 382
DI P
Sbjct: 120 SDIFGGTPVVLGA 132
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 66.0 bits (160), Expect = 2e-13
Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 3/135 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD +R + L + V V I G H ++ + A I PV+++ K+
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVS 59
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
++ + A + S E G Y +G YG
Sbjct: 60 DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDG-QYG 118
Query: 368 IAEDIVFSMPCRSKK 382
+ DI P
Sbjct: 119 L-NDIYIGTPAIIGG 132
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 65.6 bits (159), Expect = 2e-13
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R K +A GV D+V I G H + VP I G+P+++ + +
Sbjct: 3 THLDSLRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
+ E ++ +G +I+ G S A + E + Y +G G
Sbjct: 62 IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRC---IVNNEKRLLTLSAYVDGEFDG 118
Query: 368 IAEDIVFSMPCRSKK 382
I D+ +P + +
Sbjct: 119 I-RDVCIGVPVKIGR 132
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 65.7 bits (159), Expect = 2e-13
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A G V + G H ++VP + A I G+P++ + + +
Sbjct: 2 TVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60
Query: 308 EEGFTETI---QKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
+ E KR I + ++ + A+++ D ++S+ E + VY
Sbjct: 61 DSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIF--FDEKRVLTLSVYLED- 117
Query: 365 PYGIAEDIVFSMPCRSKK 382
Y +D+ S+P K
Sbjct: 118 -YLGVKDLCISVPVTLGK 134
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 65.3 bits (158), Expect = 3e-13
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 2/135 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + L V V I G H T++P + A I +P++++++
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
+ E I + +T I + + + V +
Sbjct: 60 AQKDLERIFVNVRDAAYQI-IEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLY 118
Query: 368 IAEDIVFSMPCRSKK 382
D+ +P +
Sbjct: 119 GERDVYIGVPAVINR 133
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 65.2 bits (158), Expect = 3e-13
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-- 305
T LD R + L+ K GV V I G H +Q+P + I G + E I D K
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCN 59
Query: 306 --WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 363
++ K G I K ++ AVSI +++ + + G NG
Sbjct: 60 FTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVET--LLKNQNTIRTVGTVING 117
Query: 364 NPYGIAEDIVFSMPCRSKK 382
YGI ED+ S+P
Sbjct: 118 M-YGI-EDVAISLPSIVNS 134
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 62.2 bits (150), Expect = 3e-12
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 10/135 (7%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + + + VS G H +Q + R+ G P+ +
Sbjct: 2 TLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID 60
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
E +K GG + ++ A S + K+ + +
Sbjct: 61 LAAIEEEARK-GGFTVLNGKGYTSYGVATSAIRIAKA--------VMADAHAELVVSNRR 111
Query: 368 IAEDIVFSMPCRSKK 382
+ S P +
Sbjct: 112 DDMGMYLSYPAIIGR 126
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 61.4 bits (148), Expect = 6e-12
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A V V I G H T+ P + +A I G+ + E +K H +
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59
Query: 308 EEGFTETIQKRG---GLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
+E + + I K ++ A ++ K+++ E VY +G
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAIL--NDENAVLPLSVYMDG- 116
Query: 365 PYGIAEDIVFSMPCR 379
YGI D+ P
Sbjct: 117 QYGI-NDLYIGTPAV 130
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 60.3 bits (145), Expect = 2e-11
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 7/136 (5%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A V V + G H VP +NG P+++ IKD E+
Sbjct: 4 LDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62
Query: 310 GFTETIQK---RGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
E + GG +++ G+ SA + AM + + S Y
Sbjct: 63 QLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCN--GEY 120
Query: 367 GIAEDIVFSMPCRSKK 382
G+ +D+ +P
Sbjct: 121 GL-KDMFIGLPAVIGG 135
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 57.8 bits (139), Expect = 7e-11
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ GA G + + F ++ + + G AM+L + + +
Sbjct: 3 LGFVGA-GRVGSTSAFTCLL-------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDK 54
Query: 159 EVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
K +G Y L + +E ++ R PGM R L N I + K + + K
Sbjct: 55 YPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPESK 113
Query: 218 VIVVGNPCNTNALICLK 234
++VV NP + I K
Sbjct: 114 ILVVTNPMDVMTYIMWK 130
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 57.4 bits (138), Expect = 8e-11
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 13/140 (9%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + L A Q +A + + + ++ ++ +D++ L
Sbjct: 4 IGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLEA 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASR 214
I IN + DA+ + + P +R L + G +
Sbjct: 56 HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTN-LKESGF 114
Query: 215 NVKVIVVGNPCNTNALICLK 234
+ ++V+ NP + +
Sbjct: 115 HGVLVVISNPVDVITALFQH 134
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 56.6 bits (136), Expect = 2e-10
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + F L + A +++ + + EG A++L P R
Sbjct: 3 IGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PFTR 53
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
I Y + ++ ++ P+ PG R LL N ++ E + ++ A + V
Sbjct: 54 RANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIV 112
Query: 219 IVVGNPCNTNALICLKNA 236
IVV NP + LK +
Sbjct: 113 IVVTNPVDVLTYFFLKES 130
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 56.1 bits (135), Expect = 2e-10
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F A + IA +++ + + + +E ++++
Sbjct: 4 LAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPT 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
G + E+ DA+ ++ + PG R L+ I L VA N
Sbjct: 56 VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP-NAIY 114
Query: 219 IVVGNPCNTNALICLK 234
+++ NP + + K
Sbjct: 115 MLITNPVDIATHVAQK 130
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 55.8 bits (134), Expect = 4e-10
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V GA G + +F L Q IA +++ + + G AM+ +
Sbjct: 9 VVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFNHGKVFAPK 60
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I Y+ DA+ ++ + PG R L+D N IF +++ +
Sbjct: 61 PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESV-MASGFQGLF 119
Query: 219 IVVGNPCNTNALICLK 234
+V NP + K
Sbjct: 120 LVATNPVDILTYATWK 135
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 56.0 bits (134), Expect = 4e-10
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
RLD R + L+ + V I G H QVP F ++G + + + L
Sbjct: 3 GRLDSARFRYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSVDGTDPEFSGDEKEQL 61
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
E+ + + ++ A + +++++ T E
Sbjct: 62 LGDLQESAMD-----VIERKGATEWGPARGVAHMVEAILHDTGEVLP----ASVKLEGEF 112
Query: 368 IAEDIVFSMPCRSKK 382
ED F +P
Sbjct: 113 GHEDTAFGVPVSLGS 127
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 53.5 bits (128), Expect = 2e-09
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
EE T K I V G G + + + +A +L + L+G
Sbjct: 14 EEATVPNNK---ITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEM 62
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
M+L+ L + Y + +++ ++ + G R L+ N +F
Sbjct: 63 MDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIP 122
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + +IVV NP + + K
Sbjct: 123 QI-VKYSPDCIIIVVSNPVDILTYVTWK 149
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.2 bits (117), Expect = 8e-08
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 12/149 (8%)
Query: 86 AEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145
E+ S K I V G G + + G +AL + L G
Sbjct: 12 VPEDKLSRCK---ITVVGV-GDVGMACAISILLK---GLADELALV----DADTDKLRGE 60
Query: 146 AMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
A++L+ L + Y + +++ ++ G R LL N I
Sbjct: 61 ALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIV 120
Query: 206 KALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + K+IVV NP + + K
Sbjct: 121 PGV-IQNSPDCKIIVVTNPVDILTYVVWK 148
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 48.9 bits (116), Expect = 9e-08
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
S + + G G + + F +A Q IA + + + +G A++LED
Sbjct: 1 SMPNHQKVVLVGD-GAVGSSYAFAMAQ-------QGIAEEFVIVDVVKDRTKGDALDLED 52
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ KI Y +DA+ ++ P+ PG R L++ N I + K +
Sbjct: 53 AQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS 111
Query: 212 ASRNVKVIVVGNPCNTNALICLK 234
+ +V NP + K
Sbjct: 112 GF-DGIFLVAANPVDILTYATWK 133
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 48.5 bits (115), Expect = 9e-08
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I++ GA G + + LAA + + ++ + +G A++L ++
Sbjct: 4 ISIIGA-GFVGSTTAHWLAA-------KELG-DIVLLDIVEGVPQGKALDLYEASPIEGF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V++ G N Y +++ ++ PR PGM R L+ +N I A S N
Sbjct: 55 DVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQA-APLSPNAV 113
Query: 218 VIVVGNPCNTNALICLK 234
+I+V NP + + +
Sbjct: 114 IIMVNNPLDAMTYLAAE 130
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 43.5 bits (102), Expect = 6e-06
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+A+ GA G + F +A + A +L+ + + G AM++ L P +
Sbjct: 4 VAIIGA-GFVGASAAFTMAL-------RQTANELVLIDVFKEKAIGEAMDINHGL-PFMG 54
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ + Y +D + ++ R PG R L N I E + + +
Sbjct: 55 QMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQN-IMKYYNHGVI 113
Query: 219 IVVGNPCNTNALICLK 234
+VV NP + + K
Sbjct: 114 LVVSNPVDIITYMIQK 129
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 38.9 bits (90), Expect = 3e-04
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
++ +A+ G+ GMI + + A E+ + L + + + + + S+
Sbjct: 5 QRRKKVAMIGS-GMIGGTMGYLCALREL------ADVVLYDVVKGMPEGKALDLSHVTSV 57
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKAL 208
V+ + A+ ++ + PG R LL N +I E G+ +
Sbjct: 58 VDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 117
Query: 209 NAVASRNVKVIVVGNPCNTNALICLK 234
+IVV NP + + +
Sbjct: 118 KKY-CPKTFIIVVTNPLDCMVKVMCE 142
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 37.7 bits (87), Expect = 8e-04
Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 25/167 (14%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK +I ++G ++ L P + + L ER + +A + +
Sbjct: 1 KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER----QDRIAGACDVFI 56
Query: 154 --FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
E +P E F D ++ + + + + + ++ +
Sbjct: 57 REKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116
Query: 212 ASR-------------------NVKVIVVGNPCNTNALICLKNAPSI 239
A + ++ NP A + P+
Sbjct: 117 AYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 35.4 bits (81), Expect = 0.004
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 23/159 (14%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
IAV G L+ L + + E+ + + ++ L
Sbjct: 3 IAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-----QKIVVDFVKRLVKDRF 57
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN----GQIFAEQGKALNAVASR 214
+V I DA++ + G E + + GQ G A+ +
Sbjct: 58 KVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAF 117
Query: 215 NV--------------KVIVVGNPCNTNALICLKNAPSI 239
+ ++ NP
Sbjct: 118 PIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 100.0 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 100.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 100.0 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.98 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.98 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.98 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 99.98 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.97 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.97 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.97 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 99.96 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.96 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.96 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.96 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.96 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 99.96 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.96 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 99.96 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.96 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.96 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.95 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.95 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.95 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.95 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.95 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.95 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.94 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.93 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.91 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.91 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.89 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.89 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.89 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.85 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.41 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.17 | |
| d1s6ya2 | 270 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.97 | |
| d1u8xx2 | 276 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.87 | |
| d1obba2 | 308 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.82 | |
| d1vjta2 | 278 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.72 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.7 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.56 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.36 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.21 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.06 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.05 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.0 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.87 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.78 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.77 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.58 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.58 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.56 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.45 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.35 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.3 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 97.23 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 97.22 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 97.15 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.07 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 97.01 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.94 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.82 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.82 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.8 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.78 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.76 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 96.75 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.73 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.72 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.62 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.58 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.57 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 96.57 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 96.55 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 96.5 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.5 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.49 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.49 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.47 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 96.47 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.46 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 96.44 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.44 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 96.41 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 96.4 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 96.39 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.36 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.35 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.29 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 96.28 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 96.27 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.22 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 96.22 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 96.21 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.19 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.13 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.07 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.03 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.99 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.98 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.91 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 95.85 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.84 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 95.82 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.82 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.8 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 95.8 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.76 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.76 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.69 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.65 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.58 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.55 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.54 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.52 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.44 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 95.43 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.39 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 95.39 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 95.39 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.31 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.26 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.23 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.19 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.12 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 95.11 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.08 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.97 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.93 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 94.9 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 94.85 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 94.76 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 94.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.72 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 94.65 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.56 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 94.5 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.47 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.1 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 93.95 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 93.94 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.94 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 93.85 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.82 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.77 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 93.75 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.7 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 93.63 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 93.61 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 93.54 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 93.52 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.48 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.44 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.38 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.37 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 93.36 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 93.18 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 93.16 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.87 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.85 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.84 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.84 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 92.62 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.55 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 92.47 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 92.32 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.3 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.02 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 91.92 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 91.88 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 91.82 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 91.8 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 91.79 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 91.77 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 91.6 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.59 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 91.57 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 91.41 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 91.4 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 90.84 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.83 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.82 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.81 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 90.79 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 90.75 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 90.7 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 90.63 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.6 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.5 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 90.3 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 90.24 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 89.8 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.77 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.76 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 89.61 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 89.42 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.02 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 88.97 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.53 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 88.48 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 88.46 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 88.28 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.96 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 87.81 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 87.64 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 87.6 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 87.59 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.29 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 87.18 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.0 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 86.96 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 86.9 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 86.77 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 86.52 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 85.91 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 85.85 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 85.75 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 85.7 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 85.51 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.29 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 84.73 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.49 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 84.4 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.34 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 84.32 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 84.28 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 84.21 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 83.9 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 83.42 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 83.39 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 83.18 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 82.85 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 82.82 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 82.58 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.2 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 81.84 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 81.62 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 81.38 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 80.67 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 80.64 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.35 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 80.07 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=1.3e-41 Score=305.65 Aligned_cols=174 Identities=88% Similarity=1.391 Sum_probs=153.5
Q ss_pred CcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh
Q 015897 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (398)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~ 152 (398)
|||+|||.+|++..|++.++++++.||+|+||+|+||+++++.|++++++++++++.|+|+|++.+.+.++|.++|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~ 80 (175)
T d7mdha1 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 80 (175)
T ss_dssp CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred CceEeeecccccccchhhhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc
Confidence 79999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCcceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHH
Q 015897 153 LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (398)
Q Consensus 153 ~~~~~~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~ 232 (398)
.++....+.++++++++++|||+||+++|.||+|||+|.|++.+|++|+++++++|+++|.++++|+++|||+|++|+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia 160 (175)
T d7mdha1 81 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC 160 (175)
T ss_dssp TCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH
T ss_pred ccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH
Confidence 97777788889999999999999999999999999999999999999999999999999756999999999999999999
Q ss_pred HHHCCCCCCceEEe
Q 015897 233 LKNAPSIPAKNFHA 246 (398)
Q Consensus 233 ~k~~~~~~~kvig~ 246 (398)
+++++++|+++|.+
T Consensus 161 ~k~a~~ip~~~i~~ 174 (175)
T d7mdha1 161 LKNAPDIPAKNFHA 174 (175)
T ss_dssp HHTCTTSCGGGEEE
T ss_pred HHHCCCCCHHHEeC
Confidence 99989999966543
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=7.9e-35 Score=263.94 Aligned_cols=148 Identities=80% Similarity=1.241 Sum_probs=139.0
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcC
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWG 327 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G 327 (398)
|+||++||+++||+++||++++|++++||||||++|||+||+++|+|+|+.++++++.|..+++.+.++++++++++.+|
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~kg 80 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 80 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhhc
Confidence 78999999999999999999999987899999999999999999999999999988888889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEee-ccCCCC
Q 015897 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMV-IMNLSR 397 (398)
Q Consensus 328 ~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~-~l~L~~ 397 (398)
+++++++|.++++++++|+.++++..++|++++++|++||+|+|+|||+||++|++|+ .+++ +++|++
T Consensus 81 ~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~--~~iv~~l~L~~ 149 (188)
T d7mdha2 81 RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGD--YELATDVSNDD 149 (188)
T ss_dssp SCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSC--CEECCCCCCCH
T ss_pred ccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCcc--EEEeCCCCCCH
Confidence 9999999999999999999777788999999999996699999999999999999998 6775 589875
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-33 Score=248.46 Aligned_cols=152 Identities=57% Similarity=0.903 Sum_probs=141.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
|++++||+||||+|+||+++++.|++++++++++.+.++|++.+.+.+++++.++|+.|+.++....+.++.++|++++|
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 46788999999889999999999999999998888999999999999999999999999987667788888999999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceE
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvi 244 (398)
||+||+++|.||+||++|.|++.+|+++++++++.|.++|+|+++++++|||+|++|++++|+++++|+++|
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rv 152 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNF 152 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhc
Confidence 999999999999999999999999999999999999999656899999999999999999999889998544
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=2e-33 Score=243.67 Aligned_cols=141 Identities=15% Similarity=0.235 Sum_probs=128.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
.||+||||+|+||+++++.|+.+++++| + +|+|++.+++.++|+++||.|+. ++..+.++++++|++++|||+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~e---l--~L~Di~~~~~~~~g~a~Dl~~~~-~~~~~~~i~~~~~~~~~~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADE---V--VFVDIPDKEDDTVGQAADTNHGI-AYDSNTRVRQGGYEDTAGSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSE---E--EEECCGGGHHHHHHHHHHHHHHH-TTTCCCEEEECCGGGGTTCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCE---E--EEEecCCcccccceeecchhhcc-cccCCceEeeCCHHHhhhcCEE
Confidence 3999999779999999999999999874 4 45777777888999999999977 5666667778899999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
|+++|.||+|||+|+|++..|++|++++++.|.++ +|++++|++|||+|+|+++++|.+ ++|+ |+||
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNPvDvmt~~~~k~s-g~~~~rViG 142 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLYEAG-DRSREQVIG 142 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHHHHHHHHHHHS-SSCGGGEEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecChHHHHHHHHHHHH-CcCcccccC
Confidence 99999999999999999999999999999999999 699999999999999999999998 7887 7776
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=5.1e-33 Score=241.45 Aligned_cols=141 Identities=20% Similarity=0.299 Sum_probs=126.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc-eEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR-EVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~-~v~i~~~~~eal~dAD 174 (398)
+.||+|||| |+||+++++.|+.+++++| +.| +|+++++++|+++||+|+. ++.. .....+++|++++|||
T Consensus 1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~E---lvL----~D~~~~~~~g~a~Dl~~a~-~~~~~~~i~~~~~~~~~~daD 71 (143)
T d1llda1 1 PTKLAVIGA-GAVGSTLAFAAAQRGIARE---IVL----EDIAKERVEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD 71 (143)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSSHHHHHHHHHHHHHTG-GGSTTCEEEEESCGGGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcE---EEE----EEeccccchhHHHHHHhcc-ccCCCceeecCCCHHHhhCCc
Confidence 469999995 9999999999999999874 655 4788899999999999986 3443 2334567899999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEec
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~g 247 (398)
+||+++|.||+||++|+|++..|++|++++++.|.++ +|++++|++|||||+||+++++.+ ++|+ |+||+|
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvDvmt~~~~~~s-g~p~~rViG~G 143 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLT-GLPENQIFGSG 143 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-TCCTTSEEECT
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCchHHHHHHHHHHH-CCChhhccCCC
Confidence 9999999999999999999999999999999999999 699999999999999999999998 7887 889986
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=3.8e-33 Score=245.02 Aligned_cols=150 Identities=48% Similarity=0.727 Sum_probs=138.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+++||+||||+|+||+++++.|+++++++.++++.|+|+|++.+++++++..+|+.|+.++....+.++.+++++++|||
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 57899999988999999999999999998777899999999888999999999999988766677888889999999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceE
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvi 244 (398)
+||+++|.||+||++|.|++.+|+++++++++.|.++|.+++++|++|||+|+||++++|+++++|+++|
T Consensus 82 vVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v 151 (154)
T d5mdha1 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENF 151 (154)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred EEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHE
Confidence 9999999999999999999999999999999999999645678999999999999999999989998544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=5.3e-33 Score=242.71 Aligned_cols=143 Identities=21% Similarity=0.270 Sum_probs=129.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...||+|||| |+||+++++.|++.++++| +.| + |+++++++|+++||+|+.......+.+++++|++++|||
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~e---l~L--~--Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daD 76 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADE---IVL--I--DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDAD 76 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCce---EEE--E--eeccccccchhccHhhCccccCCCeEEEECCHHHhccce
Confidence 3579999996 9999999999999999774 654 4 778899999999999987333456777889999999999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEec
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~g 247 (398)
+||+++|.||+||++|+|++.+|+++++++++.|.++ +|++++|++|||+|++|+++++++ ++|+ |+||+|
T Consensus 77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNPvd~~t~~~~k~s-g~p~~rViG~G 148 (148)
T d1ldna1 77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFS-GLPHERVIGSG 148 (148)
T ss_dssp EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHHH-TCCGGGEEECT
T ss_pred eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCccHHHHHHHHHHH-CcChhheecCC
Confidence 9999999999999999999999999999999999999 699999999999999999999998 7887 889986
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.8e-33 Score=239.47 Aligned_cols=139 Identities=23% Similarity=0.389 Sum_probs=126.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|||| |+||+++++.|+.+++++| +.| + |+++++++|+++|+.|+. ++.....+.+++|++++|||+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L--~--Di~~~~~~g~~~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFARE---MVL--I--DVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE--E--ecccccccchhccccccc-cccccccccCCcHHHhcCCCEE
Confidence 69999995 9999999999999999774 554 4 677899999999999987 5666666778899999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEe
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~ 246 (398)
|+++|.||+||++|.|++.+|++|++++++.|.++ +|++++|++|||+|+||++++|.+ ++|+ |+||+
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPvd~~t~~~~k~s-g~p~~rViGt 140 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKES-GMDPRKVFGS 140 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-TCCTTTEEEC
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcHHHHHHHHHHHH-CcCccceeCc
Confidence 99999999999999999999999999999999999 699999999999999999999998 7887 78885
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.98 E-value=9.7e-33 Score=239.45 Aligned_cols=140 Identities=21% Similarity=0.324 Sum_probs=117.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
.||+|||| |+||+++++.|+.+++++| +.| + |+++++++|+++||+|+. ++.....+++++|++++|||+|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L--~--D~~~~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 72 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANE---LVL--I--DVFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVI 72 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSE---EEE--E--CCC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eccCCccceeeeeeccCc-ccCCCeeEeeCcHHHhCCCceE
Confidence 59999996 9999999999999999874 554 4 677788999999999987 6666677778899999999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEec
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~g 247 (398)
|+++|.+|+||++|.+++.+|++++++++++|.++ +|+|++|++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvdv~t~~~~k~s-g~p~~rViG~G 142 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWS-GLPVGKVIGSG 142 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECT
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecChHHHHHHHHHHHH-CCCccceecCC
Confidence 99999999999999999999999999999999999 699999999999999999999998 6887 899986
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.98 E-value=1.1e-32 Score=240.06 Aligned_cols=144 Identities=19% Similarity=0.277 Sum_probs=118.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
|.+.+||+|||| |+||+++++.|+++++.+| +.| + |+++++++|+++||+|+.. +.....+.+++|++++|
T Consensus 2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~e---lvL--~--D~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~~~~~ 72 (146)
T d1ez4a1 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---FVI--V--DVVKDRTKGDALDLEDAQA-FTAPKKIYSGEYSDCKD 72 (146)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHGGGG-GSCCCEEEECCGGGGTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcE---EEE--e--ecccchhHHHHHHHhcccc-ccCCceEeeccHHHhcc
Confidence 556789999995 9999999999999999764 554 4 7788999999999999873 44444556778999999
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEec
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~g 247 (398)
||+||+++|.|++||++|.+++.+|+++++++++.|.++ +|++++|++|||+|++++++++.+ ++|+ |+||+|
T Consensus 73 adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvdv~t~~~~k~s-g~p~~rViG~G 146 (146)
T d1ez4a1 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFS-GFPKERVIGSG 146 (146)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECT
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccHHHHHHHHHHH-CcCccceecCC
Confidence 999999999999999999999999999999999999998 699999999999999999999998 7887 789986
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.98 E-value=3.6e-32 Score=240.06 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=128.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
+..+..||+|||| |+||+++++.|+.+++++| ++| +|+++++++|+++||+|+.........+..++|++++
T Consensus 16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~E---lvL----iD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~ 87 (160)
T d1i0za1 16 ATVPNNKITVVGV-GQVGMACAISILGKSLADE---LAL----VDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA 87 (160)
T ss_dssp CCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcE---EEE----EEeccchhHHHHHHHhccccccCCCeEEeccchhhcc
Confidence 4455679999995 9999999999999999885 665 4788899999999999987333344556788999999
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
|||+||+++|.+|+||++|++++.+|+++++++++.|.++ +|++++|++|||+|+||+++++.+ ++|+ |+||
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvDv~t~~~~k~s-glp~~rViG 160 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVDILTYVTWKLS-GLPKHRVIG 160 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 9999999999999999999999999999999999999998 799999999999999999999998 7887 7786
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.98 E-value=4.9e-32 Score=234.98 Aligned_cols=140 Identities=24% Similarity=0.333 Sum_probs=123.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceE-EEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v-~i~~~~~eal~dADi 175 (398)
|||+|||| |+||+++++.|+.+++++| +.| + |+++++++|+++||+|+...+.... ...+++|++++|||+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~e---lvL--~--Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adi 72 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IAL--V--DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEE--E--CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCce---EEE--E--ecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccE
Confidence 79999995 9999999999999999874 554 4 7788999999999999873332222 234567999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEe
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~ 246 (398)
||+++|.||+||++|.+++.+|++|++++++.|.++ +|+++++++|||+|++|+++++.+ ++|+ |+||+
T Consensus 73 Vvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD~~t~~~~k~s-g~p~~rViG~ 142 (142)
T d1ojua1 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKES-GKPRNEVFGM 142 (142)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHHS-CCCTTSEEEC
T ss_pred EEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChHHHHHHHHHHH-CCChhcEecC
Confidence 999999999999999999999999999999999999 699999999999999999999998 7887 78884
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=2.1e-32 Score=238.35 Aligned_cols=140 Identities=17% Similarity=0.257 Sum_probs=119.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||+|||| |+||+++++.|+.+++.+| +.| + |+++++++|+++||+|+......+..+.+++|++++|||+|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~e---lvL--~--Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADD---YVF--I--DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVV 73 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCce---EEE--E--ecccchhhhHHHhhhccccccCCccceeccCHHHhccccEE
Confidence 69999995 9999999999999998774 654 3 77889999999999998743334556677899999999999
Q ss_pred EEeCCCCC----CCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEe
Q 015897 177 LLIGAKPR----GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (398)
Q Consensus 177 iitag~~r----k~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~ 246 (398)
|+++|.+| +||++|+|++.+|++|++++++.|+++ +|++++|++|||+|+||++++|.+ ++|+ |+||+
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD~~t~~~~k~s-g~p~~rViGt 146 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVT-GFPAHKVIGT 146 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEEC
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHHHHHHHHHHHh-CCCccceeCc
Confidence 99999887 789999999999999999999999998 699999999999999999999998 7987 78874
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=2.2e-31 Score=231.52 Aligned_cols=141 Identities=20% Similarity=0.377 Sum_probs=122.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc--eEEEe-cCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIG-INPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~--~v~i~-~~~~eal~dA 173 (398)
|||+||||+|+||+++++.|+.+++++| +. |+|++.+.++++|+++||+|+...... ++.+. +++|++++||
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~e---l~--L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKD---LV--LIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCE---EE--EEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccc---cc--cccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence 6999999779999999999999999874 54 577666667899999999998643333 44433 5689999999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
|+||+|+|.||+||++|.|++.+|++|++++++.|.++ +|++++ ++|||+|+|++++++.+ ++|+ |+||
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~ii-vVtNPvD~mt~~~~k~s-g~p~~rViG 145 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIF-VITNPVDVMTYKALVDS-KFERNQVFG 145 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEE-ECSSSHHHHHHHHHHHH-CCCTTSEEE
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeEE-EEcCchHHHHHHHHHHH-CcCcccccC
Confidence 99999999999999999999999999999999999999 698864 68999999999999998 7888 7776
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=6.5e-32 Score=242.70 Aligned_cols=148 Identities=40% Similarity=0.637 Sum_probs=133.0
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccc----ccccHHHHHHHHHhhhHHHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLI 323 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~----~~~~~~el~~~v~~~~~~ii 323 (398)
|+||++|||++||+++||+|++|++.+||||||+++||+||+++|+|+|+.+++.+ +.+..+++.+.+++++++|+
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 80 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVI 80 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhhh
Confidence 78999999999999999999999987788999999999999999999998765433 33556788999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 324 ~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+.+|++++.++|.++++++++|+...++..+++++|+++|.+||+|+|+|||+||+++++|+ +++.+++|++
T Consensus 81 ~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv--~~v~~l~L~~ 152 (179)
T d5mdha2 81 KARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTW--KIVEGLPIND 152 (179)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEE--EECCCCCCCH
T ss_pred hccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcE--EEEeCCCCCH
Confidence 98888887778999999999988767888999999999986899999999999999999999 9999999985
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=2.3e-31 Score=230.52 Aligned_cols=140 Identities=26% Similarity=0.377 Sum_probs=123.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~eal~dADi 175 (398)
|||+|||| |+||+++++.|+.++++++ +.| + |++++++++.++|++|.......+.++ .++++++++|||+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~e---l~L--~--Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadv 72 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARE---LVL--L--DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCce---EEE--e--ccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeE
Confidence 69999995 9999999999999999774 554 4 677889999999999876322233333 3678999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEe
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~ 246 (398)
||+++|.||+||++|.+++.+|+++++++++.|.++ +|+||++++|||+|++|+++++.+ ++|+ |+||+
T Consensus 73 vvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvd~~~~~~~~~s-g~p~~rviG~ 142 (142)
T d1guza1 73 VIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGM 142 (142)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEE
T ss_pred EEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCChHHHHHHHHHHh-CCChHhEeeC
Confidence 999999999999999999999999999999999999 699999999999999999999998 7887 78884
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.4e-31 Score=234.61 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=126.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
+.||+|||| |+||+++++.|+..++++| +.| +|+++++++|+++||+|+.+.......++.++|++++|||+
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~e---lvL----~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adi 90 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGLADE---LAL----VDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKL 90 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTSCSE---EEE----ECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccE
Confidence 469999995 9999999999999999874 655 37788999999999999874333455567789999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
||+++|.||+||++|.|++..|+++++++++.|.++ +|++++|++|||+|+||+++++.+ ++|+ |+||
T Consensus 91 vvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvDv~t~~~~k~s-g~p~~rV~G 159 (159)
T d2ldxa1 91 VIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVDILTYVVWKIS-GFPVGRVIG 159 (159)
T ss_dssp EEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHHHHHHHHHHHH-CSCTTTEEE
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999998 799999999999999999999998 7887 7786
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-30 Score=226.66 Aligned_cols=140 Identities=24% Similarity=0.305 Sum_probs=118.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|||+||||+|+||+++++.|+.+ ++.++ +. |+| ++ +.++|.++||+|+.+........++++|++++|||+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~e---l~--L~D--~~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE---LS--LYD--IA-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCE---EE--EEC--SS-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcE---EE--Eec--cc-ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence 69999997799999999998765 56553 44 555 44 467899999999875443444456788999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHH---HCCCCCC-ceEE
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK---NAPSIPA-KNFH 245 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k---~~~~~~~-kvig 245 (398)
||+++|.||+||++|.|++..|.+|+++++++|.++ +|++++|++|||+|+|++++++ ..+++|+ |+||
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 999999999999999999999999999999999999 6999999999999999998764 4557887 7776
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.97 E-value=2.1e-30 Score=230.65 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=129.3
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc-----ccHHHHHHHHHhhhH
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGG 320 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~-----~~~~el~~~v~~~~~ 320 (398)
+||.||++|++++||+++|+++++|+. +||||||++|||+||+++|+|.|+.+++.+.. +..+++.+++++++.
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCHG-WILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBC-CEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHceE-EEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceE
Confidence 589999999999999999999999975 89999999999999999999999988775532 234678889999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 321 LLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 321 ~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++++.+|.+.++ +|.++++.+..++ .+++.++|++++++| +||+++++|||+||++|++|+ +++.+++|++
T Consensus 80 ~~~~~~~~s~~a-~a~~~~~~~~~~~--~~~~~v~~~~~~~~g-~YGi~~~i~~s~Pv~lg~~Gv--~~v~~l~L~~ 150 (172)
T d1i0za2 80 EVIKLKGYTNWA-IGLSVADLIESML--KNLSRIHPVSTMVKG-MYGIENEVFLSLPCILNARGL--TSVINQKLKD 150 (172)
T ss_dssp HHHHHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEE--EEECCCCCCH
T ss_pred EeeecccccchH-HHHHHHHHHHHHh--cCCCcccccceeccC-cCCCcCCEEEEEEEEecCCcE--EEEeCCCCCH
Confidence 999999988774 6677777777777 789999999999999 799998999999999999999 8999999975
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=99.96 E-value=4.5e-30 Score=228.40 Aligned_cols=142 Identities=22% Similarity=0.283 Sum_probs=126.1
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccc------cccHHHHHHHHHhhhHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH------KWLEEGFTETIQKRGGL 321 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~------~~~~~el~~~v~~~~~~ 321 (398)
|.||++|++++||+++|+++++|+. +||||||++|||+||+++|+|.|+.+++... .+..+++.+++++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~ 79 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK 79 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence 6899999999999999999999985 8999999999999999999999998876532 24457899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 322 LIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 322 ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|++.+|.++++ +|..+++.+.+++ .+++.+++++++++| .||+ +++|||+||+++++|+ +++++|+|++
T Consensus 80 i~~~kg~t~~~-~a~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~i~~s~P~~lg~~Gv--~~i~~l~L~~ 148 (170)
T d1llda2 80 IINGKGATNYA-IGMSGVDIIEAVL--HDTNRILPVSSMLKD-FHGI-SDICMSVPTLLNRQGV--NNTINTPVSD 148 (170)
T ss_dssp HHTSCCSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECSS-BTTB-CSSEEEEEEEEETTEE--ECCSCCCCCH
T ss_pred HHhhhccchhh-hHHHHHHHHHHHH--cCCCceeeeeccccC-ccCC-CCeeEeeccEEcCCee--EEEecCCCCH
Confidence 99999998774 5666667777767 789999999999999 7998 7999999999999999 8899999975
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.96 E-value=3e-30 Score=223.66 Aligned_cols=138 Identities=25% Similarity=0.357 Sum_probs=111.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~eal~dADi 175 (398)
+||+|||| |+||+++|+.|+.+++.+ +. |+ |++++++++.++||+|+........++ .+++|++++|||+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~d----l~--l~--D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGD----IV--LL--DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSE----EE--EE--CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcce----EE--EE--eeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCE
Confidence 59999995 999999999999988731 44 34 677889999999999986322223333 3678999999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEE
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig 245 (398)
||+++|.||+||++|.|++..|++++++++++|.++ +|+|+++++|||+|+|++++++.+ ++|+ |+||
T Consensus 73 vvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPvDv~t~~~~~~s-glp~~rViG 141 (142)
T d1uxja1 73 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIG 141 (142)
T ss_dssp EEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred EEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999998 799999999999999999999998 7887 7787
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=6.6e-30 Score=223.38 Aligned_cols=141 Identities=21% Similarity=0.340 Sum_probs=121.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceE-EEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v-~i~~~~~eal~dAD 174 (398)
..||+|||| |+||+++++.|+++++ . ++.| + |+++++++|+++||+|+......+. ...+++|++++|||
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~---el~L--~--Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~ad 73 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNL-G---DVVL--F--DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD 73 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C---EEEE--E--CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC-C---eEEE--E--eccCCcceeeecchhhhccccCCCcEEEecccccccCCCc
Confidence 469999995 9999999999999886 3 2554 4 6778899999999999852222232 33468999999999
Q ss_pred EEEEeCCCCCCCCCc-----hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ceEEec
Q 015897 175 WALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (398)
Q Consensus 175 iViitag~~rk~g~~-----r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kvig~g 247 (398)
+||+++|.+|+||++ |++++.+|+++++++++.|.++ +|+++++++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD~~t~~~~~~s-g~p~~rViG~G 150 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLG 150 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECC
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchHHHHHHHHHHH-CCCchheeccC
Confidence 999999999999875 9999999999999999999999 799999999999999999999998 7887 889976
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=1.8e-29 Score=219.14 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=116.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ecCcccccCCCcEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWA 176 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~eal~dADiV 176 (398)
||+||||+|+||+++++.|+.++++++ +.| + |++ +.+++++||+|..........+ ..+.+++++|||+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~e---lvL--i--Di~--~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSR---LTL--Y--DIA--HTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSE---EEE--E--ESS--SHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccce---EEE--E--ecc--ccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 899999779999999999999999884 554 5 444 3578999999987322223333 34568899999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHH---HHCCCCCC-ceEE
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL---KNAPSIPA-KNFH 245 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~---k~~~~~~~-kvig 245 (398)
|+|+|.||+|||+|.+++..|+++++++++.|.++ +|+++++++|||+|+++++++ +..+++|+ |+||
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 99999999999999999999999999999999999 799999999999999888764 45668988 7776
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=9.2e-30 Score=226.90 Aligned_cols=147 Identities=40% Similarity=0.673 Sum_probs=123.5
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~ 326 (398)
.|.||++|||++||+++|+++++|++++||||||+++||+||+++++|.|+.++..+..+.. +..++..+++++++..+
T Consensus 1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (173)
T d1y7ta2 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEK-VFIPTVAQRGAAIIQAR 79 (173)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhcccccccc-hhhhhhhhhHHHHHHHh
Confidence 48899999999999999999999998778999999999999999999999999887655433 44444555555655555
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 327 G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+++++.++|.+++..+++++.++++++++|++++++| +||+|++++||+||+++++|+ +.+.+++|++
T Consensus 80 ~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g-~YGi~~~~~~s~Pvi~~~gg~--~~v~~l~L~~ 147 (173)
T d1y7ta2 80 GASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAKDGAY--RVVEGLEINE 147 (173)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSS-GGGCCTTSEEEEEEEEETTEE--EECCCCCCCH
T ss_pred ccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEecc-ccCCccceeEeeeEEEeCCeE--EEecCCCCCH
Confidence 5555566888899999888876789999999999999 899999999999999888777 6677799875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.96 E-value=1.2e-29 Score=222.72 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=123.8
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCC--cceEEEecCcccc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYEL 169 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~ea 169 (398)
|++|++||+|||| |+||+++++.|++.++. ++.| + |+++++++|+++||+|..... ...+..+++.+++
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~----el~L--~--D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA----DVVL--Y--DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 73 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEEE--E--CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCc----eEEE--E--EeccccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence 5677899999996 99999999999998872 2544 4 678889999999999975322 2334445556789
Q ss_pred cCCCcEEEEeCCCCCCCCC-----chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCC-ce
Q 015897 170 FEDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KN 243 (398)
Q Consensus 170 l~dADiViitag~~rk~g~-----~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~-kv 243 (398)
++|||+||+++|.+|+||+ +|.+++.+|+++++++++.|.++ +|++++|++|||+|++|+++++.+ ++|+ |+
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPvd~lt~~~~~~s-g~p~~rV 151 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLDCMVKVMCEAS-GVPTNMI 151 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcHHHHHHHHHHHh-CcChhcE
Confidence 9999999999999999985 89999999999999999999999 799999999999999999999998 7887 78
Q ss_pred EEe
Q 015897 244 FHA 246 (398)
Q Consensus 244 ig~ 246 (398)
||+
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 884
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=4e-30 Score=228.12 Aligned_cols=145 Identities=23% Similarity=0.393 Sum_probs=122.0
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~ 325 (398)
+||.||++||+++||++||+++++|+. +||||||++|||+||+++++|+|+.++.....+..+++.++++++++.+++.
T Consensus 1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T d1hyea2 1 LGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL 79 (168)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC-
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHh
Confidence 589999999999999999999999986 9999999999999999999999999887766677788999999988888888
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++++ +|...++.+..++ ++.+.++++++++.| +||.++|+|||+||++|++|+ +++++++|++
T Consensus 80 k~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~v~~s~Pv~lg~~Gv--~~i~~l~Ls~ 145 (168)
T d1hyea2 80 KGGSEFG-PAAAILNVVRCIV--NNEKRLLTLSAYVDG-EFDGIRDVCIGVPVKIGRDGI--EEVVSIELDK 145 (168)
T ss_dssp -----CC-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-SSSSCEEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred ccCcccc-chhhhhHHHHhhh--ccCCCeEEEEEEEec-ccCCcCCEEEeeceEEcCCcE--EEEecCCCCH
Confidence 8877663 3445555555556 788999999999998 676669999999999999999 9999999985
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.96 E-value=6.8e-30 Score=227.13 Aligned_cols=142 Identities=30% Similarity=0.411 Sum_probs=122.1
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc-----ccHHHHHHHHHhhhHHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGGLL 322 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~-----~~~~el~~~v~~~~~~i 322 (398)
|.||++|++++||+++|+++++|+. +||||||++|||+||+++|+|.|+.+++.+.. +..+++.+++++.++++
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI 79 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceE-EEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 7899999999999999999999986 89999999999999999999999998876542 33467888999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 323 i~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++.+|.+.|+ +|..+++.+.+++ .+++.++|++++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 80 ~~~~~s~~~a-~a~~~~~~~~~i~--~~~~~~~~~~~~~~g-~yg~-~~i~~s~Pv~lg~~Gv--~~i~~l~Ls~ 147 (169)
T d1y6ja2 80 IKNKGATYYG-IAVSINTIVETLL--KNQNTIRTVGTVING-MYGI-EDVAISLPSIVNSEGV--QEVLQFNLTP 147 (169)
T ss_dssp HHHTSCCCHH-HHHHHHHHHHHHH--HTCCCEECCEEEECS-BTTB-CSEEEECCEEEETTEE--EECCCCCCCH
T ss_pred hhhhhhhhhH-HHHHHHHHHHHhc--cCCCCceeeeeeecc-ccCC-cccceeeeeEEcCCcE--EEEecCCCCH
Confidence 9999988874 5555666666556 689999999999999 7999 5999999999999999 9999999985
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=99.96 E-value=1.1e-29 Score=225.77 Aligned_cols=145 Identities=34% Similarity=0.622 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhcCC
Q 015897 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (398)
Q Consensus 249 ~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (398)
+||++||+++||+++|++|++|++++||||||+++||+||+++++|.++.++..+..+..+++.+.+++++.++...+|.
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGV 81 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHHhh
Confidence 59999999999999999999999888999999999999999999999999988877777778888888888888888888
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+++.+++.+++..+..|+. .+++++++++++++| +||+|+++|||+||+++++|+ +.+.+|+|++
T Consensus 82 ~~~~~~~~a~~~~~~~~i~-~~~~~~~~~s~~~~g-~yg~~~gi~fS~Pv~ig~~gv--e~v~~l~L~~ 146 (171)
T d1b8pa2 82 SSAASAANAAIDHIHDWVL-GTAGKWTTMGIPSDG-SYGIPEGVIFGFPVTTENGEY--KIVQGLSIDA 146 (171)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CCTTCCEEEEEECCS-GGGCCTTCEEEEEEEEETTEE--EECCCCCCCH
T ss_pred hhhhhhhHHHHHHHHHHHh-CCCccceeEEEEecc-ccccccceEEEEEEEEeCCeE--EEEeCCCCCH
Confidence 8776666666666666664 478899999999999 899999999999999999999 8899999975
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.96 E-value=2.5e-29 Score=222.48 Aligned_cols=139 Identities=20% Similarity=0.396 Sum_probs=121.5
Q ss_pred chhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh--c
Q 015897 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--W 326 (398)
Q Consensus 249 ~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~--~ 326 (398)
+||++||+++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.++ ..+++.++++++|++|++. +
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~s~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~~~~k 79 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLPAE--TIDKLVERTRNGGAEIVEHLKQ 79 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSCHH--HHHHHHHHHHTHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccCHhhcccCCccccccCCHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999986 9999999999999999999999999887543 3568999999999999874 4
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 327 G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.+.+ +++..+.+.+..++ .+++.+++++++++| +||+ +|+|||+||++|++|+ .++++++|++
T Consensus 80 gsa~~-a~~~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~~~~s~P~~lg~~Gv--~~i~~l~Ls~ 143 (163)
T d1guza2 80 GSAFY-APASSVVEMVESIV--LDRKRVLPCAVGLEG-QYGI-DKTFVGVPVKLGRNGV--EQIYEINLDQ 143 (163)
T ss_dssp SCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred CCcch-hHHHHHHHHHHhee--ccCCCEEEEeeeecc-ccCC-CCcEEEEeeEEcCCee--EEEecCCCCH
Confidence 55554 35556666666556 789999999999999 7999 7999999999999999 8999999975
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=2.5e-29 Score=219.73 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=111.9
Q ss_pred cCchhHHHHHHHHHHHcCcCcCce-eeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKV-SNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V-~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~ 325 (398)
||.|||+|||+.|++..+. ++ ++ |||||||++|||+||.++++|.+. .+++.+++++++++|+++
T Consensus 1 Gt~LDsaR~r~~l~~~~~~---~v~~a-~ViGeHGds~vp~~S~~~i~g~~~----------~~~i~~~v~~~g~eIi~~ 66 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAGAR---NIRRA-WIIGEHGDSMFVAKSLADFDGEVD----------WEAVENDVRFVAAEVIKR 66 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCB---SCCCC-CEEBCSSTTCEECGGGCCCBSCCC----------HHHHHHHHHTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCCC---Cccee-EEEecCCCccccccccccccCccc----------hhHhHHHHHHHHHHhhhh
Confidence 6899999999999887654 45 55 999999999999999999999653 357889999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
||+|.|+ +|.++++.+++++ .|++.++|+|++++| +||+ +|+|+|+||++|++|+ + +++++|++
T Consensus 67 kG~t~~g-ia~a~~~iv~aIl--~d~~~v~pvs~~l~g-eyG~-~dv~lsvP~vig~~Gv--e-i~~l~L~~ 130 (152)
T d1ojua2 67 KGATIFG-PAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGI-ENVAVGVPAKLGKNGA--E-VADIKLSD 130 (152)
T ss_dssp HSSCCHH-HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--E-ECCCCCCH
T ss_pred ccceecc-HHHHHHHHHHHHH--hcCCCceeeeEEecc-ccCC-CCEEEEeEEEECCCce--E-EEcCCCCH
Confidence 9999874 6666666666666 799999999999999 7999 7999999999999997 5 88999975
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.96 E-value=4.6e-29 Score=221.11 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=123.4
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc--ccHHHHHHHHHhhhHHHH
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQKRGGLLI 323 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~--~~~~el~~~v~~~~~~ii 323 (398)
+||.||++|++++||++||+++++|+. +||||||++|+|+||+++++|.|+.++..... +...++.+..++++.+++
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHG-WVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVI 79 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBC-CBCBCSSTTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEe
Confidence 589999999999999999999999996 89999999999999999999999988764432 223355666777777888
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 324 ~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
..+|.+.++ +|..+++.+.+++ .+++.+++++++++| +||+++++|||+||++|++|+ +++++++|++
T Consensus 80 ~~~~s~~~a-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~~~i~~s~Pv~lg~~Gv--~~v~~l~L~~ 147 (169)
T d1ldma2 80 KLKGYTSWA-IGLSVADLAETIM--KNLCRVHPVSTMVKD-FYGIKDNVFLSLPCVLNDHGI--SNIVKMKLKP 147 (169)
T ss_dssp HHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEE--EEECCCCCCH
T ss_pred ccccchhhH-HHHHHhhhhheec--CCCCceeeeeeeccc-ccCCcCCceEEeeEEEcCCcE--EEEecCCCCH
Confidence 888877653 5666666666666 789999999999999 899999999999999999999 8899999975
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=7.7e-29 Score=220.55 Aligned_cols=143 Identities=24% Similarity=0.369 Sum_probs=126.2
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc----ccHHHHHHHHHhhhHHH
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK----WLEEGFTETIQKRGGLL 322 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~----~~~~el~~~v~~~~~~i 322 (398)
||.||++||+++||+++|++|.+|+. +||||||++|||+||+++++|.|+.+++.+.. ...+++.+.++++++++
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEI 79 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeEE-EEEecCCCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeE
Confidence 78999999999999999999999985 99999999999999999999999998765432 22457788888999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 323 i~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++.+|.+.++ +|.++++.+..++ .+++.+++++++.+| +||. +++|||+||++|++|+ +++++|+|++
T Consensus 80 ~~~~~~~~~~-~a~a~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~-~~v~~s~P~~lg~~Gv--~~v~~l~Ls~ 147 (172)
T d1a5za2 80 IERKGATHYA-IALAVADIVESIF--FDEKRVLTLSVYLED-YLGV-KDLCISVPVTLGKHGV--ERILELNLNE 147 (172)
T ss_dssp HHHHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEESS-BTTB-CSEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred eeccccchhh-HHHHHHHHHHHHH--hhcccceeeeccccc-cccc-CCeeEeeeEEEcCCce--EEEeCCCCCH
Confidence 9999888774 6667777777777 689999999999999 7988 7999999999999999 8999999975
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=6.2e-29 Score=220.58 Aligned_cols=145 Identities=19% Similarity=0.271 Sum_probs=126.4
Q ss_pred ecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccc-----ccHHHHHHHHHhhhH
Q 015897 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGG 320 (398)
Q Consensus 246 ~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~-----~~~~el~~~v~~~~~ 320 (398)
+||.||++|++++||+++|+++++|+. +||||||++|+|+||+++|+|.|+.+++.+.. +..+++.+..+.++.
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~~-~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCHG-WVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSCC-CEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcEE-EEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhcccee
Confidence 589999999999999999999999985 89999999999999999999999987665432 223567778888888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 321 LLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 321 ~ii~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
++++.+|.+.++ +|.++.+.+.+++ .+++.+++++++++| +||+++++|||+||++|++|+ +++++++|++
T Consensus 80 ~~~~~k~~s~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~~~i~~s~Pv~ig~~Gv--~~v~~l~L~~ 150 (172)
T d2ldxa2 80 EVLDMKGYTSWA-IGLSVTDLARSIL--KNLKRVHPVTTLVKG-FHGIKEEVFLSIPCVLGESGI--TDFVKVNMTA 150 (172)
T ss_dssp HHHHHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSSCEEEEEEEEETTEE--EEEECCCCCH
T ss_pred ehhhcccchhHH-HHHHHhHHHHhhc--CCCccceeeeeeccc-ccCCcCCeEEEEEEEEcCCCE--EEEecCCCCH
Confidence 888888888764 6666777777777 689999999999999 899999999999999999999 8999999975
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.95 E-value=1.1e-28 Score=217.70 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=119.6
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~ 326 (398)
||.||++||+++||+++|+++++|+. +||||||++|||+||+++++|+|+.+++.+++|..+++.+.+++++++|++.+
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k 79 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK 79 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH
Confidence 78999999999999999999999986 89999999999999999999999999988888888999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 327 G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.++|+ ++..+.+.+.++. .++..+++++.|..+ +++|||+||++|++|+ +++++|+|++
T Consensus 80 g~~~~~-~a~~~~~~~~~~~--~~~~~~~~~s~~~~~------~~~~~s~Pv~ig~~Gv--~~v~~l~Ls~ 139 (163)
T d1hyha2 80 GYTSYG-VATSAIRIAKAVM--ADAHAELVVSNRRDD------MGMYLSYPAIIGRDGV--LAETTLDLTT 139 (163)
T ss_dssp SSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT------TCSEEEEEEEEETTEE--EEECCCCCCH
T ss_pred HhHHHh-HHHHhhHHHHHhc--CCccceeeeceecCC------cceEEEeEEEEcCCeE--EEEecCCCCH
Confidence 999885 4555555566555 688999999887553 4689999999999999 8999999985
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.95 E-value=1.2e-28 Score=219.95 Aligned_cols=143 Identities=27% Similarity=0.380 Sum_probs=118.6
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccH---HHHHHHHHhhhHHHH
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE---EGFTETIQKRGGLLI 323 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~---~el~~~v~~~~~~ii 323 (398)
|++||++|++++||+++|++|++|+. +||||||++|||+||+++|+|.|+.+++.+..+.. .++....+.++.+++
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQA-TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIV 79 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcEE-EEEccCCCccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEe
Confidence 56899999999999999999999985 99999999999999999999999998876654433 344445556666655
Q ss_pred H--hcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 324 K--KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 324 ~--~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
. .+|.+.++ ++.++++.+.+++ .+++.+++++++.+| +||++ ++|||+||++|++|+ +++++|+|++
T Consensus 80 ~~~~~gst~~~-~a~a~~~~~~~i~--~~~~~~~~~s~~~~~-~yGi~-~v~~s~Pv~ig~~Gi--~~v~~l~l~~ 148 (174)
T d1pzga2 80 RFLGQGSAYYA-PAASAVAMATSFL--NDEKRVIPCSVYCNG-EYGLK-DMFIGLPAVIGGAGI--ERVIELELNE 148 (174)
T ss_dssp HHHSSSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred eeecccchhhh-hHHHHHHHHHhhc--ccCCceEEeeecccc-ccCCC-CceeeeeeEEcCCcE--EEEeCCCCCH
Confidence 4 56666553 6666666666666 789999999999999 89994 799999999999999 8899999975
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.95 E-value=9.9e-29 Score=218.69 Aligned_cols=139 Identities=24% Similarity=0.391 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHH--hc
Q 015897 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--KW 326 (398)
Q Consensus 249 ~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~--~~ 326 (398)
+||++||+++||+++|+++.+|+. +||||||++|||+||+++++|.|+.+++.+. ..+++.+.+++++++|++ ++
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~~~~k 79 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQA-MLMGGHGDEMVPLPRFSTISGIPVSEFIAPD--RLAQIVERTRKGGGEIVNLLKT 79 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSCHH--HHHHHHHHHHTHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCceeeeeeeeecCCCchhhccchh--hHHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999986 8999999999999999999999999877543 457899999999999975 45
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 327 G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.+.| ++|.++.+.+.+++ .+++.++|++++++| +||+ ++++||+||++|++|+ +++++++|++
T Consensus 80 gs~~~-a~a~a~~~i~~~i~--~~~~~~~~~~~~~~g-~ygi-~~~~~s~P~~ig~~Gv--~~v~~l~L~~ 143 (164)
T d1uxja2 80 GSAYY-APAAATAQMVEAVL--KDKKRVMPVAAYLTG-QYGL-NDIYFGVPVILGAGGV--EKILELPLNE 143 (164)
T ss_dssp SCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred Ccccc-hHHHHHHHHHHHHh--CCCCceeeeeeeecc-ccCC-CCceEEECeEEeCCee--EEEeCCCCCH
Confidence 55555 36666666666666 789999999999999 8999 6899999999999999 8899999985
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.95 E-value=1.3e-28 Score=218.78 Aligned_cols=142 Identities=20% Similarity=0.346 Sum_probs=124.9
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccH---HHHHHHHHhhhHHHHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE---EGFTETIQKRGGLLIK 324 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~---~el~~~v~~~~~~ii~ 324 (398)
|.||++|++++||+++|++|.+|+. +||||||++|||+||+++|+|.|+.+++.+..+.. +++.+.++++++++++
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDA-YIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN 79 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEccCCCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence 6899999999999999999999985 99999999999999999999999988776654433 4566788888999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 325 ~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
.+|.+.++ +|..+.+.+..++ ++++.+++++++++| +||+ +++|||+||++|++|+ +++++++|++
T Consensus 80 ~k~s~~~a-~a~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~~~~S~Pv~lg~~Gv--~~v~~l~Ls~ 145 (171)
T d1ez4a2 80 LKGATFYG-IGTALMRISKAIL--RDENAVLPVGAYMDG-QYGL-NDIYIGTPAIIGGTGL--KQIIESPLSA 145 (171)
T ss_dssp HHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred hhhhHhHH-HHHHHHHHHHHHh--ccCCceEEEEEeecc-ccCc-cceeeeEEEEEcCCcE--EEEeCCCCCH
Confidence 99988774 5666666666666 789999999999999 8999 8999999999999999 8999999975
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.95 E-value=1.4e-28 Score=217.76 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccH---HHHHHHHHhhhHHHHHh
Q 015897 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE---EGFTETIQKRGGLLIKK 325 (398)
Q Consensus 249 ~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~---~el~~~v~~~~~~ii~~ 325 (398)
+||++|++++||+++|++|++|+. +||||||++|+|+||+++++|.|+.+...+..|.. +++.+.++++++++++.
T Consensus 2 ~LD~~R~~~~la~~lgv~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 80 (165)
T d1t2da2 2 VLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL 80 (165)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence 599999999999999999999986 89999999999999999999999988766544433 45677888899999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 326 ~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+|.++|+ ++.++++.+..++ .+.+++++++++++| +||+ +|+|||+||++|++|+ +++++++|++
T Consensus 81 ~~~~~~a-~a~a~~~~~~~i~--~~~~~~~~~~v~~~g-~yg~-~~v~~s~Pv~lg~~Gv--~~i~~l~L~~ 145 (165)
T d1t2da2 81 HASPYVA-PAAAIIEMAESYL--KDLKKVLICSTLLEG-QYGH-SDIFGGTPVVLGANGV--EQVIELQLNS 145 (165)
T ss_dssp TSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred ccceeec-hhHHHHHHHHHHh--hccccceeeeecccc-cccc-CCeeEeeeEEEcCCce--EEEeCCCCCH
Confidence 9988774 6666677766667 789999999999999 7998 7999999999999999 9999999975
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=1.7e-27 Score=210.61 Aligned_cols=142 Identities=21% Similarity=0.329 Sum_probs=120.8
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhccccccc----HHHHHHHHHhhhHHHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLI 323 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~----~~el~~~v~~~~~~ii 323 (398)
|.||++||+.+||+++|+++++|+. +||||||++|||+||+++++|.++.+++.+..+. .+++.+.++..+++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 79 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII 79 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence 6899999999999999999999985 9999999999999999999999998877654332 3456777777888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 324 ~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
..+|.+.++ ++....+.+..++ .+.+.+++++++++| +||. +|+|||+||++|++|+ +++++|+|++
T Consensus 80 ~~~~~s~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~yg~-~~v~~s~Pv~lg~~Gv--~~v~~l~Ls~ 146 (168)
T d1ldna2 80 EKKGATYYG-IAMGLARVTRAIL--HNENAILTVSAYLDG-LYGE-RDVYIGVPAVINRNGI--REVIEIELND 146 (168)
T ss_dssp HHHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-TTSC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred Hhhccccch-HHHHHhhHHHhhh--cccceeeeeeeeecc-ccCC-CCeeecceEEEcCCeE--EEEeCCCCCH
Confidence 888887764 4445555555555 689999999999999 8996 8999999999999999 8899999985
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.94 E-value=6.6e-29 Score=221.11 Aligned_cols=142 Identities=24% Similarity=0.335 Sum_probs=121.7
Q ss_pred CchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccc----cHHHHHHHHHhhhHHHH
Q 015897 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW----LEEGFTETIQKRGGLLI 323 (398)
Q Consensus 248 t~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~----~~~el~~~v~~~~~~ii 323 (398)
|.||++|++++||+++|+++++|+. +||||||++|||+||+++++|.|+.+++.+..+ ..+++.+.+++++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 79 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII 79 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCEE-EEEBSSSSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred CchHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence 6899999999999999999999985 899999999999999999999999887765432 22456777888899999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 324 ~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
+.+|.+.++ +|..+++.+..++ .+++.+++++++++| +||+ +++|||+||++|++|+ +++++|+|++
T Consensus 80 ~~kg~~~~a-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi-~~~~~s~P~~lg~~Gv--~~i~~l~L~~ 146 (172)
T d1llca2 80 KLKGATFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGI-NDLYIGTPAVINRNGI--QNILEIPLTD 146 (172)
T ss_dssp SSSSCTTHH-HHHHHHHHHHHHH--HTCCCCEECCCCCSS-SSSC-CSSCCBCEEEEETTEE--EEECCCCCTT
T ss_pred Hhhhhhhhh-hHHHHHHHHHHHh--cCCCCccceeeeecC-ccCc-ccceEEEEEEEcCCce--EEEecCCCCH
Confidence 999988774 5555555555555 688899999999999 8999 5799999999999999 8999999986
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.93 E-value=2.2e-26 Score=201.63 Aligned_cols=139 Identities=22% Similarity=0.304 Sum_probs=120.0
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHhc
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~~ 326 (398)
||.||++|++++||+++|+++++|++ +||||||++++|+||+++++|.+.... .+..+++.+.++++++++++.+
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~ 76 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEG-TILGEHGDAQVPVFSKVSVDGTDPEFS----GDEKEQLLGDLQESAMDVIERK 76 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTBCCCCC----HHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEE-EEEeCCCCceeeehhhhcccccccccc----hHHHHHHHHHhhhhHHHHHHhh
Confidence 58999999999999999999999997 899999999999999999999886432 1234577888999999999988
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccCCCC
Q 015897 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMNLSR 397 (398)
Q Consensus 327 G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~L~~ 397 (398)
|.+.++ +|.++++.+..++ .+.+.+++++++++| +||. +|++||+||++|++|+ +++++|+|++
T Consensus 77 ~~s~~~-~a~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~-~~i~~S~Pv~ig~~Gv--~~v~~l~l~~ 140 (161)
T d1o6za2 77 GATEWG-PARGVAHMVEAIL--HDTGEVLPASVKLEG-EFGH-EDTAFGVPVSLGSNGV--EEIVEWDLDD 140 (161)
T ss_dssp SSCCHH-HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE--EEECCCCCCH
T ss_pred hhhhhH-HHHhhHhhhHhhh--hccccceeecccccc-cccc-cCceeeeeeEEcCCCE--EEEeCCCCCH
Confidence 887764 6666667776666 688999999999999 7877 7999999999999999 8899999985
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=1.7e-24 Score=192.35 Aligned_cols=143 Identities=10% Similarity=-0.047 Sum_probs=111.0
Q ss_pred CCEEEEEcCCCchHHHH--HHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc----CCCcceEEEecCcccc
Q 015897 96 MVNIAVSGAAGMIANHL--LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~l--a~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~ea 169 (398)
++||+|||| |++|.+. +..+.....+. .-.|.|+ |+++++.++.++|+.+.. .....++..++|++++
T Consensus 1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~---~~eI~L~--Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a 74 (169)
T d1s6ya1 1 RLKIATIGG-GSSYTPELVEGLIKRYHELP---VGELWLV--DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA 74 (169)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCC---EEEEEEE--CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CcEEEEECC-ChhhHHHHHHHHHHhccccC---CCEEEEE--cCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhh
Confidence 379999996 9888654 33444433322 1244455 566677778888887643 1233466678899999
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhh--------------------HHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHH
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (398)
++|||+||++++.+|++|++|.++ +.+|++++++++++|+++ +|+||+|++|||+|++|
T Consensus 75 l~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t 153 (169)
T d1s6ya1 75 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVT 153 (169)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHH
T ss_pred cCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHH
Confidence 999999999999998888777665 579999999999999999 69999999999999999
Q ss_pred HHHHHHCCCCCCceEEec
Q 015897 230 LICLKNAPSIPAKNFHAL 247 (398)
Q Consensus 230 ~~~~k~~~~~~~kvig~g 247 (398)
++++|++| +.|+||+|
T Consensus 154 ~~~~k~~p--~~kviGlC 169 (169)
T d1s6ya1 154 EAVLRYTK--QEKVVGLC 169 (169)
T ss_dssp HHHHHHCC--CCCEEECC
T ss_pred HHHHHHCC--CCCEEeeC
Confidence 99999974 23899986
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.6e-24 Score=192.08 Aligned_cols=144 Identities=15% Similarity=0.055 Sum_probs=111.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC--CCcceEEEecCcccccC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~ 171 (398)
+|..||+|||| |++|.+.+...+......- ..-.|.|+ |++++++++.++|+.+... .....+..+++.+++++
T Consensus 1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l-~~~eivL~--Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~ 76 (167)
T d1u8xx1 1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEEF-PIRKLKLY--DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT 76 (167)
T ss_dssp CCCEEEEEECT-TSSSHHHHHHHHHHTTTTS-CEEEEEEE--CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS
T ss_pred CCCceEEEECC-ChhhhHHHHHHHHhhhhhc-CCCEEEEE--cCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC
Confidence 45689999996 9999886543333222110 00134445 6778899988888887642 22346777889999999
Q ss_pred CCcEEEEeCCCCCCCCCchhhhH--------------------HHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHH
Q 015897 172 DAEWALLIGAKPRGPGMERAGLL--------------------DINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll--------------------~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (398)
|||+||+++|.+|++|++|.+++ .+|+++++++++.|+++ ||+||+|++|||+|++|++
T Consensus 77 ~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~ 155 (167)
T d1u8xx1 77 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEA 155 (167)
T ss_dssp SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHH
T ss_pred CCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHH
Confidence 99999999999999999998875 46799999999999999 6999999999999999999
Q ss_pred HHHHCCCCCCceE
Q 015897 232 CLKNAPSIPAKNF 244 (398)
Q Consensus 232 ~~k~~~~~~~kvi 244 (398)
++|++|. .|+|
T Consensus 156 ~~k~~P~--~rVI 166 (167)
T d1u8xx1 156 TRRLRPN--SKIL 166 (167)
T ss_dssp HHHHSTT--CCEE
T ss_pred HHHHCCc--cccc
Confidence 9999632 2666
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.9e-24 Score=189.48 Aligned_cols=142 Identities=14% Similarity=-0.003 Sum_probs=109.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|||| |++|.+.++..+....... ..-.|.|+ |+++++++ .+.|+.+.......++.++++++++++|||+|
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~-~~~el~L~--Did~~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvV 75 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDV-RIDEVIFY--DIDEEKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKYV 75 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTS-CCCEEEEE--CSCHHHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHhccccc-CccEEEEE--ecCcHHHH-HHHHHHHhhhccCceEEEecCcccccCCCCEE
Confidence 69999996 9999999876554433211 00134455 56677776 56787776644556788889999999999999
Q ss_pred EEeCCCCCCCCCchhhhH--------------------HHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHC
Q 015897 177 LLIGAKPRGPGMERAGLL--------------------DINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (398)
Q Consensus 177 iitag~~rk~g~~r~dll--------------------~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~ 236 (398)
|+++|.+|++|++|.+++ .|+++++.++.+ +.++ +|+||+|++|||+|++|++++|.+
T Consensus 76 Vita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~-~p~a~~i~vtNPvdiit~~~~~~~ 153 (162)
T d1up7a1 76 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRK-TSNATIVNFTNPSGHITEFVRNYL 153 (162)
T ss_dssp EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHH-TTCCEEEECSSSHHHHHHHHHHTT
T ss_pred EEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhcc-CCCeEEEEeCCHHHHHHHHHHHhC
Confidence 999999998888776554 556777877766 6677 699999999999999999999987
Q ss_pred CCCCCceEEec
Q 015897 237 PSIPAKNFHAL 247 (398)
Q Consensus 237 ~~~~~kvig~g 247 (398)
|. .|+||+|
T Consensus 154 p~--~rviGlC 162 (162)
T d1up7a1 154 EY--EKFIGLC 162 (162)
T ss_dssp CC--SSEEECC
T ss_pred CC--CCEEeeC
Confidence 42 3899986
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.89 E-value=3.8e-24 Score=189.60 Aligned_cols=137 Identities=20% Similarity=0.109 Sum_probs=102.8
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEecc-CCCccccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~H-g~s~vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~ 325 (398)
.|.||++||+++||+++|++|++|++ +|+|+| |++++|+||++.+++.+..+ ..+++.+.+++++++|++.
T Consensus 1 ~T~LDs~R~~~~la~~l~v~~~~V~~-~ViGeHg~~t~vp~~s~~~~~~~~~~~-------~~~~l~~~v~~~~~eii~~ 72 (169)
T d1mlda2 1 VTTLDIVRANAFVAELKGLDPARVSV-PVIGGHAGKTIIPLISQCTPKVDFPQD-------QLSTLTGRIQEAGTEVVKA 72 (169)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGGCBC-CEEECSSGGGEEECGGGCBSCCCCCHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeeE-EEEEcCCCcceeehhhhhccCCCCcHH-------HHHHHHHHHHHhHHHHHHh
Confidence 37899999999999999999999997 889988 67788888888766644322 2467899999999999998
Q ss_pred cCCCcH--HHHHHHHHHHHHHhhcC-CCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeecc-CCCC
Q 015897 326 WGRSSA--ASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIM-NLSR 397 (398)
Q Consensus 326 ~G~t~~--~s~A~~I~~aI~~~~~~-~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l-~L~~ 397 (398)
+|.+++ ++++.++++++..++.. .+...+.++ ..+ .||..++++||+||++|++|+ ++++++ +|++
T Consensus 73 k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~---~~~-~~~~~~~v~~s~P~~ig~~Gi--~~v~~l~~L~~ 142 (169)
T d1mlda2 73 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC---SFV-KSQETDCPYFSTPLLLGKKGI--EKNLGIGKISP 142 (169)
T ss_dssp HTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEE---EEE-ECCSSSSSEEEEEEEEETTEE--EEECCCCSCCH
T ss_pred hcCcChHhHHHHHHHHHHHHHhccccCCceEEEEE---eec-cccccCCEeEeeeEEEcCCcc--EEEecCCCCCH
Confidence 876543 45566665555554421 123333333 334 466667899999999999999 999998 5875
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=8.3e-23 Score=181.64 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCchHHHHHH--HHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC--CCcceEEEecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLF--KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~--~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~ 171 (398)
.+||+|||| |++|++++. .|+....+.. .+|+ |+ |++++++++.++|+.|... ....++..++|.+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~-~eiv--L~--Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG-STVT--LM--DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT-CEEE--EE--CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCC-CEEE--EE--eCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc
Confidence 579999995 999998643 3444332221 1354 44 6778999999999998652 22246777789999999
Q ss_pred CCcEEEEeCC------------------CCCCCCCchhhh--------HHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 172 DAEWALLIGA------------------KPRGPGMERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 172 dADiViitag------------------~~rk~g~~r~dl--------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|||+|+++.+ .+++++++|.++ +.+|+++++++++.|+++ ||+||+|++|||+
T Consensus 76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~-~p~a~~i~~TNPv 154 (171)
T d1obba1 76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAANPI 154 (171)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECSSCH
T ss_pred CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHH-CcCeEEEEECChH
Confidence 9999998754 445667777665 578999999999999999 6999999999999
Q ss_pred hhHHHHHHHHCCCCCCceEE
Q 015897 226 NTNALICLKNAPSIPAKNFH 245 (398)
Q Consensus 226 d~~t~~~~k~~~~~~~kvig 245 (398)
|++|++++|+++ + |+||
T Consensus 155 dv~t~~~~k~~~-~--k~iG 171 (171)
T d1obba1 155 FEGTTLVTRTVP-I--KAVG 171 (171)
T ss_dssp HHHHHHHHHHSC-S--EEEE
T ss_pred HHHHHHHHHhcC-C--CccC
Confidence 999999999984 5 8886
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.7e-22 Score=175.39 Aligned_cols=136 Identities=19% Similarity=0.056 Sum_probs=98.0
Q ss_pred cCchhHHHHHHHHHHHcCcCcCceeeEEEEeccCCCc-cccccceEEcCccchhhcccccccHHHHHHHHHhhhHHHHHh
Q 015897 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQ-VPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (398)
Q Consensus 247 gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg~s~-vp~~S~a~I~G~p~~~~i~~~~~~~~el~~~v~~~~~~ii~~ 325 (398)
.|.||++||+++||+++|++|++|++ +|+|+||+++ +|++|++...+. ..+..+++.+.++++++++++.
T Consensus 1 ~T~LDs~R~~~~iA~~l~v~~~~V~~-~ViGghg~~~~~p~~s~~~~~~~--------~~~~~~~l~~~v~~~g~~ii~~ 71 (167)
T d2cmda2 1 VTTLDIIRSNTFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQVPGVSF--------TEQEVADLTKRIQNAGTEVVEA 71 (167)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGCCC-CEEECSSTTTEEECGGGCTTCCC--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeEE-EEEEcCCCceEeeecccccCCCC--------cHHHHHHHHHHHHhhhhhhhhh
Confidence 37899999999999999999999997 8899887654 555565542221 1234578999999999999975
Q ss_pred cCC---CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC-CCC
Q 015897 326 WGR---SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN-LSR 397 (398)
Q Consensus 326 ~G~---t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~-L~~ 397 (398)
++. +.+ +.|.++++.+..++ .+.+...++++...+ .||.++++|||+||++|++|+ +++++++ |++
T Consensus 72 ~~~~~~~~~-~~a~a~~~~~~~i~--~~~~~~~~~~~~~~~-~~~~~~~i~~s~P~~ig~~Gv--~~v~~l~~L~~ 141 (167)
T d2cmda2 72 KAGGGSATL-SMGQAAARFGLSLV--RALQGEQGVVECAYV-EGDGQYARFFSQPLLLGKNGV--EERKSIGTLSA 141 (167)
T ss_dssp HTTSCSCCH-HHHHHHHHHHHHHH--HHHTTCSSCEEEEEE-ECCCSSCSEEEEEEEEETTEE--EEECCCCCCCH
T ss_pred hccCcchHH-HHHHHHHHHHHHHh--ccCCCceEEEEEccc-ccccCCCccccccEEEeCCce--EEEeeCCCCCH
Confidence 532 223 34444434444333 334455556666666 688878999999999999999 8899985 875
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=1.6e-10 Score=107.51 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchhhccc-----------ccc--------------
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD-----------HKW-------------- 306 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~~-----------~~~-------------- 306 (398)
.-+..+||+.+|++.++|+. -+.| || +.|+.+++++|+.+...+.+ ..|
T Consensus 4 i~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 78 (253)
T d1up7a2 4 INFIREIAEMFSARLEDVFL-KYYGLNH----LSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNP 78 (253)
T ss_dssp HHHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECG
T ss_pred HHHHHHHHHHhCCCHHHcEE-EEEEECC----hhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEcc
Confidence 45788999999999999995 7799 99 78999999999866532211 000
Q ss_pred ------cHHHHHHHHHh---hhHHH--------------------HHhcCCCcHHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 015897 307 ------LEEGFTETIQK---RGGLL--------------------IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 357 (398)
Q Consensus 307 ------~~~el~~~v~~---~~~~i--------------------i~~~G~t~~~s~A~~I~~aI~~~~~~~~~~~i~~~ 357 (398)
..++..++... |+.++ +.+++...++..|..++++|. +|++.++.+
T Consensus 79 Yl~Yy~~~~~~~~~~~~~~tra~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~ai~-----~~~~~~~~v 153 (253)
T d1up7a2 79 YLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLE-----TDEGKIHIV 153 (253)
T ss_dssp GGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHHHHHHHHHHHHH-----SSSCEEEEE
T ss_pred cchhhcCcHHHHHHhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchHHHHHHHHHHHH-----cCCCcEEEE
Confidence 02222222221 11111 134566667788888888886 899999999
Q ss_pred EEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 358 GVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 358 sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
+|.++|..-|+|+|+++++||+|+++|++|..+.++|
T Consensus 154 Nv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~g~lP 190 (253)
T d1up7a2 154 NTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGD 190 (253)
T ss_dssp EEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCCCCC
T ss_pred eCCCcCcCCCCChhhheEEEEEecCCcccccccCCCc
Confidence 9999998899999999999999999999888887776
|
| >d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.97 E-value=1.8e-09 Score=101.11 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCcCcCceeeEEEEe-ccCCCccccccceEEcCccchhhccc----c-------------ccc-------
Q 015897 253 NRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----H-------------KWL------- 307 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~~~V~~v~V~G-~Hg~s~vp~~S~a~I~G~p~~~~i~~----~-------------~~~------- 307 (398)
.-+...||+.||+++++|+. -+.| || +.|+...+.+|+.+...+.+ . .|.
T Consensus 4 i~~~~~la~~Lg~~~~~i~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (270)
T d1s6ya2 4 IGMRMGVAKLLGVDADRVHI-DFAGLNH----MVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGL 78 (270)
T ss_dssp HHHHHHHHHHHTSCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHSCC------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHcEE-EEEeeCC----HhHeeeeEECCccccHHHHHHHhcccccccccccccccCcCHHHHHhc
Confidence 34678899999999999995 7799 99 78999999999765532211 0 011
Q ss_pred -------------HHHHHHH--------------HHhhhHHH---------------HHhcCCCcHHHHHHHHHHHHHHh
Q 015897 308 -------------EEGFTET--------------IQKRGGLL---------------IKKWGRSSAASTAVSIVDAMKSL 345 (398)
Q Consensus 308 -------------~~el~~~--------------v~~~~~~i---------------i~~~G~t~~~s~A~~I~~aI~~~ 345 (398)
.++...+ +.++..++ ....+...++..|+.|+++|.
T Consensus 79 ~~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~ai~-- 156 (270)
T d1s6ya2 79 KVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACSLISSIY-- 156 (270)
T ss_dssp CSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCCHHHHHHHHHHHHH--
T ss_pred ccEeccccccccccHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHhHHhccCcchhhhccCcchHHHHHHHHHHHh--
Confidence 1111111 11111111 122444456778999998886
Q ss_pred hcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 346 VTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 346 ~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
+|++.++.++|.++|..-++|+|+++++||+++++|++|..+.++|
T Consensus 157 ---~~~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~g~lP 202 (270)
T d1s6ya2 157 ---NDKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVGDLP 202 (270)
T ss_dssp ---HTCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCC
T ss_pred ---cCCCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEeeecCCCc
Confidence 7899999999999998899999999999999999999988887776
|
| >d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=2.3e-09 Score=100.67 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCcCc-CceeeEEEEe-ccCCCccccccceE-EcCccchhhccc-----------------cccc-----
Q 015897 253 NRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNAR-INGLPVKEIIKD-----------------HKWL----- 307 (398)
Q Consensus 253 ~Rl~~~lA~~lgv~~-~~V~~v~V~G-~Hg~s~vp~~S~a~-I~G~p~~~~i~~-----------------~~~~----- 307 (398)
.-++..+|+.||+++ ++|+. -+.| || +.+|.+.+ .+|+.+...+.+ ..|.
T Consensus 6 ~~~~~~ia~~Lgv~~~~ev~~-~~~GLNH----~~w~~~v~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (276)
T d1u8xx2 6 VGIEDRMAQILGLSSRKEMKV-RYYGLNH----FGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAK 80 (276)
T ss_dssp HHHHHHHHHHHTCSCGGGEEE-EEEEETT----EEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC-------CTTSHHHH
T ss_pred HHHHHHHHHHcCCCchhceEE-EEEeecc----HHHHhheeccCCEECHHHHHHHHHhcCCCCcccccccccccHHHHHH
Confidence 557889999999987 57985 7799 99 78889988 588765532211 0011
Q ss_pred ----------------------HHHHHHHHH---hhhHHHHH----------------------hcCCCcHHHHHHHHHH
Q 015897 308 ----------------------EEGFTETIQ---KRGGLLIK----------------------KWGRSSAASTAVSIVD 340 (398)
Q Consensus 308 ----------------------~~el~~~v~---~~~~~ii~----------------------~~G~t~~~s~A~~I~~ 340 (398)
.++..+..+ .|+.++++ ..+...++..|+.+++
T Consensus 81 ~~~~~~~~~~~~p~~Yl~Yy~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~av~ii~ 160 (276)
T d1u8xx2 81 ARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLAR 160 (276)
T ss_dssp HHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCCTTTHHHHHHHH
T ss_pred HhCCcccCCcccchhHHHhccchHHHHHHhccCCCcHHHHHHHHHHHHHHhHHhhcccccchhhcccCCchHHHHHHHHH
Confidence 111111100 02222221 1222234567777777
Q ss_pred HHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 341 AMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 341 aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
+|. +|++.++.++|.++|..-|+|+|+++++||+|+++|++|..+.++|
T Consensus 161 ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~g~lP 209 (276)
T d1u8xx2 161 AIA-----YNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIP 209 (276)
T ss_dssp HHH-----HTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCC
T ss_pred HHh-----cCCCcEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeecCCCc
Confidence 775 7899999999999999899999999999999999999998887776
|
| >d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=1.2e-08 Score=97.18 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEe-eccC
Q 015897 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREM-VIMN 394 (398)
Q Consensus 335 A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i-~~l~ 394 (398)
|+.|+++|. +|++.++.++|.++|.+-++|+|.+++|||+|+++|++|..+ ..+|
T Consensus 184 a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP 239 (308)
T d1obba2 184 HIPFIDALL-----NDNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLP 239 (308)
T ss_dssp HHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCC
T ss_pred HHHHHHHHH-----cCCCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCC
Confidence 777777776 799999999999999999999999999999999999988776 3455
|
| >d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Probab=98.72 E-value=1.6e-08 Score=94.85 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEeCCccCCCCCceEEEEeEEEcCCCceeeEeeccC
Q 015897 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKKVTSVCREMVIMN 394 (398)
Q Consensus 329 t~~~s~A~~I~~aI~~~~~~~~~~~i~~~sv~~~G~~ygip~dv~~svP~~ig~~Gv~~~~i~~l~ 394 (398)
..++..|+.|+++|. +|++.++.++|.++|.+-++|+|.+++|||+|+++|++|..+.++|
T Consensus 149 ~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~vg~~~ 209 (278)
T d1vjta2 149 KLSGEQHIPFINAIA-----NNKRVRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKVEPDL 209 (278)
T ss_dssp CCCCCSHHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCCCSCC
T ss_pred cchHHHHHHHHHHHh-----CCCCeEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeecCCCC
Confidence 334567888888886 7999999999999998899999999999999999999887776543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.3e-08 Score=90.46 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=74.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh-------cC------------CCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-------LF------------PLL 157 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~-------~~------------~~~ 157 (398)
.||+|||| |.+|+.+|..++..|. ++.+ + |++++.++.....++.. .. ..+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~-----~V~l--~--D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 74 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGH-----TVVL--V--DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 74 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCC-----cEEE--E--ECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHH
Confidence 49999995 9999999999999886 4554 4 56655554222222211 00 011
Q ss_pred ceEEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 158 ~~v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
.++..+++..++++|||+|+-+. .+|.++-+++.+.+.+++.+++++ +||...+
T Consensus 75 ~~i~~~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l 128 (192)
T d1f0ya2 75 STIATSTDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSL 128 (192)
T ss_dssp HTEEEESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred hhccccchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCccc
Confidence 34667777788999999999985 246789999999999997777776 8887654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.56 E-value=4.5e-08 Score=86.27 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=76.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHh----hhcC-C-C--------cce
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE----DSLF-P-L--------LRE 159 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~----d~~~-~-~--------~~~ 159 (398)
++..||+|||| |.+|..+|..++..|. ++.+ + |++++.++.....+. +... . . ...
T Consensus 2 ~~I~~vaViGa-G~mG~~iA~~~a~~G~-----~V~l--~--D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (186)
T d1wdka3 2 KDVKQAAVLGA-GIMGGGIAYQSASKGT-----PILM--K--DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNG 71 (186)
T ss_dssp CCCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhce
Confidence 45679999995 9999999999999886 4654 4 556555542222211 1110 0 0 123
Q ss_pred EEEecCcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHH
Q 015897 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (398)
Q Consensus 160 v~i~~~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~ 232 (398)
+.. +.+++++.+||+||.+.. +|..+-+++.++|.+++.+++++ +||.......-+
T Consensus 72 i~~-~~~~~~~~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~i~~l 127 (186)
T d1wdka3 72 IRP-TLSYGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTISISLL 127 (186)
T ss_dssp EEE-ESSSTTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHHHH
T ss_pred eec-ccccccccccceeeeeec--------------chHHHHHHHHHHHHhhcCCCeeE--EeccccccHHHH
Confidence 444 456789999999999743 35788999999999998778876 888766544333
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.36 E-value=2.7e-06 Score=72.43 Aligned_cols=93 Identities=23% Similarity=0.164 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|.+|+++|..|...|. +|.. + |++++.++ .+.++. . +....++.+++++||+|
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~-----~V~~--~--d~~~~~~~-~a~~~~-----~---~~~~~~~~~~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGH-----YLIG--V--SRQQSTCE-KAVERQ-----L---VDEAGQDLSLLQTAKII 61 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHH-HHHHTT-----S---CSEEESCGGGGTTCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--ECCchHHH-HHHHhh-----c---cceeeeecccccccccc
Confidence 6899999 59999999999988875 3543 3 67766655 333211 1 11224567899999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++.- ...+.++.+.+.....++.+|+.+++-
T Consensus 62 ilavp----------------~~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 62 FLCTP----------------IQLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp EECSC----------------HHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred cccCc----------------Hhhhhhhhhhhhhhcccccceeecccc
Confidence 98742 234556666666655677887777654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.21 E-value=2.3e-06 Score=73.38 Aligned_cols=102 Identities=15% Similarity=0.024 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc-CCCc----ceEEEecCcccccC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLL----REVKIGINPYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~-~~~~----~~v~i~~~~~eal~ 171 (398)
+||+|||| |.+|..++..|...|. ++.+ + |+++++++.....-.... .+.. .....+++..++++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 71 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQ-----SVLA--W--DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK 71 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc
Confidence 59999995 9999999999999985 3554 3 677676654332211111 0111 12345567889999
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+||+||++... .-..++.++++.+-.++.+|+...|.
T Consensus 72 ~aD~iii~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 72 DADVILIVVPA----------------IHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp TCSEEEECSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred CCCEEEEEEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 99999998532 23456666777776677877665554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.06 E-value=3.6e-06 Score=73.13 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=63.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC--Cc-ceEEEecCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LL-REVKIGINPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~--~~-~~v~i~~~~~eal~dA 173 (398)
|||+|||| |..|+++|..|+..+. +|.| +..+.+++..+.....-.+..++ .. ..+..+++..+++++|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~-----~V~l--~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRI--WGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEE--ECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--EEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 79999995 9999999999998864 3654 43344444443322211111111 11 2345566778899999
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+||++.. .+.++++.+++..+- ++..+|+.+
T Consensus 73 d~Ii~avp----------------s~~~~~~~~~l~~~l-~~~~ii~~t 104 (180)
T d1txga2 73 EVVLLGVS----------------TDGVLPVMSRILPYL-KDQYIVLIS 104 (180)
T ss_dssp SEEEECSC----------------GGGHHHHHHHHTTTC-CSCEEEECC
T ss_pred chhhcccc----------------hhhhHHHHHhhcccc-ccceecccc
Confidence 99999743 245667777777773 455555554
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.05 E-value=3.2e-06 Score=74.36 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=53.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcC----CCcceEEEecCcccc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~ea 169 (398)
..|.||+|||| |..|+++|..|+..+. +|.| + +++++.++..-..=++..+ .+..++.++++..++
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~-----~V~l--~--~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a 74 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCR-----EVCV--W--HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKA 74 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEE-----EEEE--E--CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHH
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCC-----eEEE--E--EecHHHHHHHhhcccccccccccccccccccchhhhhc
Confidence 44779999995 9999999999998764 3655 3 4666655533322111111 122468888888999
Q ss_pred cCCCcEEEEeC
Q 015897 170 FEDAEWALLIG 180 (398)
Q Consensus 170 l~dADiViita 180 (398)
+++||+||++.
T Consensus 75 ~~~ad~iiiav 85 (189)
T d1n1ea2 75 YNGAEIILFVI 85 (189)
T ss_dssp HTTCSCEEECS
T ss_pred cCCCCEEEEcC
Confidence 99999999974
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.00 E-value=1.3e-05 Score=70.58 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=69.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH------------HhhhcCCCcceEEEec
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME------------LEDSLFPLLREVKIGI 164 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D------------L~d~~~~~~~~v~i~~ 164 (398)
|||+||| +|.||..+|..|+..|. .|. . +|.|+++.+..-.. |.... .......++
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-----~V~--g--~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~--~~~~~~~~~ 68 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVI--G--VDVSSTKIDLINQGKSPIVEPGLEALLQQGR--QTGRLSGTT 68 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEE--E--ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH--HTTCEEEES
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-----cEE--E--EeCCHHHHHHhcccCCcccchhhhhhhhhhh--cccccccCC
Confidence 7999999 59999999999999875 243 2 46666665533211 00000 112456777
Q ss_pred CcccccCCCcEEEEeCCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEE-ECCCchh
Q 015897 165 NPYELFEDAEWALLIGAKPRG-PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNT 227 (398)
Q Consensus 165 ~~~eal~dADiViitag~~rk-~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d~ 227 (398)
+..+++++||+++++.+.|-. .|......+. .+...+.+.++.. .++..||+ -|-|...
T Consensus 69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~---~~~~~i~~~~~~~-~~~~liii~STv~pGt 129 (202)
T d1mv8a2 69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREK-SERHTVVVRSTVLPGT 129 (202)
T ss_dssp CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTC-CSCCEEEECSCCCTTH
T ss_pred CHHHHHhhCCEEEEecCccccccccccchhhh---hhhhhhhheeecc-cCCcceeeccccCCcc
Confidence 888999999999999888742 3332222232 3444454445544 46666554 3444443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.87 E-value=9.9e-05 Score=62.43 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|.||+||| .|.+|+++|..|...+... .+ +++|++++.++ .+.++.- .+...+........++|+
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~-----~I--~~~D~~~~~~~-~a~~~~~------~~~~~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKG-----KI--YGYDINPESIS-KAVDLGI------IDEGTTSIAKVEDFSPDF 65 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCS-----EE--EEECSCHHHHH-HHHHTTS------CSEEESCGGGGGGTCCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCe-----EE--EEEECChHHHH-HHHHhhc------chhhhhhhhhhhcccccc
Confidence 55899999 5999999999999887522 22 23577766655 3333211 111123334556679999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
||++.- .+.+.++.+.+..+.+++.+|+-++.-
T Consensus 66 Iila~p----------------~~~~~~vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 66 VMLSSP----------------VRTFREIAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred ccccCC----------------chhhhhhhhhhhccccccccccccccc
Confidence 999853 234555556666655678888777765
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.78 E-value=2.6e-05 Score=66.08 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=47.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| .|.+|+.+|..|+..|. ++.. + |++.++++.... .. .....+..+.++++|+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~-----~V~~--~--d~~~~~~~~~~~----~~------~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--S--DRNPEAIADVIA----AG------AETASTAKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHH----TT------CEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC-----eEEE--E--eCCcchhHHHHH----hh------hhhcccHHHHHhCCCeE
Confidence 6899999 69999999999999875 3433 4 677666653332 11 22345678899999999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
|++-.
T Consensus 61 i~~v~ 65 (161)
T d1vpda2 61 ITMLP 65 (161)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 99753
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=3.5e-06 Score=70.99 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=65.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC-CcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~-~~~~v~i~~~~~eal~dADi 175 (398)
|||+|||| |.+|+.++..|+..|. ++.+ + +++++..+. +...... ......+..+..+++.++|+
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-----~V~~--~--~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 66 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQG--W--LRVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDL 66 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----ceEE--E--EcCHHHhhh----hccccCCccccccccccchhhhhcccce
Confidence 79999995 9999999999999875 3654 3 444332211 1111101 11123345678899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
||++.... -..+..+.+..+..++..|+.+.|=++.
T Consensus 67 iii~vka~----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~ 102 (167)
T d1ks9a2 67 LLVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (167)
T ss_dssp EEECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEEeeccc----------------chHHHHHhhccccCcccEEeeccCcccH
Confidence 99986421 2345556666654678999999996654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2.5e-05 Score=68.36 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-----cCcccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYEL 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-----~~~~ea 169 (398)
.|+||+|+||+|++|++++..|+..|. ++.+ +.++.+++. ... +...++... .+..++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-----~V~~----~~R~~~~~~-------~~~-~~~~~~~~gD~~d~~~l~~a 64 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY-----EVTV----LVRDSSRLP-------SEG-PRPAHVVVGDVLQAADVDKT 64 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCGGGSC-------SSS-CCCSEEEESCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EEcChhhcc-------ccc-ccccccccccccchhhHHHH
Confidence 467999999999999999999998874 3443 245555432 111 111122221 123578
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
++++|+||.+.|.......... +....+.+.+.+++. + --.+|.++
T Consensus 65 l~~~d~vi~~~g~~~~~~~~~~-----~~~~~~~l~~aa~~~-~-v~r~i~~s 110 (205)
T d1hdoa_ 65 VAGQDAVIVLLGTRNDLSPTTV-----MSEGARNIVAAMKAH-G-VDKVVACT 110 (205)
T ss_dssp HTTCSEEEECCCCTTCCSCCCH-----HHHHHHHHHHHHHHH-T-CCEEEEEC
T ss_pred hcCCCEEEEEeccCCchhhhhh-----hHHHHHHHHHHHHhc-C-CCeEEEEe
Confidence 9999999998765321111111 233455566666664 2 23455554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.58 E-value=4.5e-05 Score=63.93 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=46.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||++||+ |++|++++..|+..+- +.+.+ .|+++++++..+.++ .+... ++.++++++|+|
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~----~~i~v----~~r~~~~~~~l~~~~---------~~~~~-~~~~~v~~~Div 61 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGG----YRIYI----ANRGAEKRERLEKEL---------GVETS-ATLPELHSDDVL 61 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS----CEEEE----ECSSHHHHHHHHHHT---------CCEEE-SSCCCCCTTSEE
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC----CcEEE----EeCChhHHHHhhhhc---------ccccc-cccccccccceE
Confidence 69999995 9999999999887762 13443 478888776555432 12333 456778999999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 62 ~lav 65 (152)
T d1yqga2 62 ILAV 65 (152)
T ss_dssp EECS
T ss_pred EEec
Confidence 9985
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=8.2e-05 Score=62.50 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+|+||+|.||+.++..|+...-+.. ..++++....+.. .. +.... . ........+.++++++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~---~~l~~~~ss~s~g----~~--~~~~~-~--~~~~~~~~~~~~~~~~Di 68 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDA---IRPVFFSTSQLGQ----AA--PSFGG-T--TGTLQDAFDLEALKALDI 68 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGG---SEEEEEESSSTTS----BC--CGGGT-C--CCBCEETTCHHHHHTCSE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCe---eEEEEeecccccc----cc--ccccC-C--ceeeecccchhhhhcCcE
Confidence 56999999999999999987776643332 3444442222111 00 00000 0 011122346678999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+|++.+ ..+-+++++.+.+. +.+++| ++|-.+
T Consensus 69 vF~a~~----------------~~~s~~~~~~~~~~-g~~~~V--ID~Ss~ 100 (146)
T d1t4ba1 69 IVTCQG----------------GDYTNEIYPKLRES-GWQGYW--IDAASS 100 (146)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHT-TCCCEE--EECSST
T ss_pred EEEecC----------------chHHHHhhHHHHhc-CCCeec--ccCCcc
Confidence 999875 45677777777764 344455 555443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.45 E-value=0.00023 Score=60.16 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|+||+||| .|.+|+.+|..|+..+. ++.. + |++.++.+... ... .....+..+.++++|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~-----~v~~--~--d~~~~~~~~~~----~~~------~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY-----LLNV--F--DLVQSAVDGLV----AAG------ASAARSARDAVQGADV 60 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHH----HTT------CEECSSHHHHHTSCSE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC-----eEEE--E--ECchhhhhhhh----hhh------ccccchhhhhccccCe
Confidence 67999999 69999999999999875 3443 4 67666554222 111 1233567899999999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+++-.
T Consensus 61 ii~~v~ 66 (162)
T d3cuma2 61 VISMLP 66 (162)
T ss_dssp EEECCS
T ss_pred eeeccc
Confidence 988753
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.35 E-value=9.1e-05 Score=62.18 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=46.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| +|++|++++..|+..+. .+.+ + +++.++++..+..+. +.+..+..+.+++||+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~-----~i~v--~--~r~~~~~~~l~~~~g---------~~~~~~~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH-----ELII--S--GSSLERSKEIAEQLA---------LPYAMSHQDLIDQVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC-----EEEE--E--CSSHHHHHHHHHHHT---------CCBCSSHHHHHHTCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC-----eEEE--E--cChHHhHHhhccccc---------eeeechhhhhhhcccee
Confidence 6999999 59999999999987642 3543 3 677777665544332 12345677889999999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9885
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.30 E-value=0.00036 Score=58.51 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=57.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+|+||+|.+|+.++..|+...-+.. +.+.++-...... ...+ +...........+.+.++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~---~~i~~~ss~~~~g----k~~~-----~~~~~~~~~~~~~~~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDL---IEPVFFSTSQIGV----PAPN-----FGKDAGMLHDAFDIESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGG---SEEEEEESSCCSS----BCCC-----SSSCCCBCEETTCHHHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCc---eEEEEeccccccc----cccc-----cCCcceeeecccchhhhccccEE
Confidence 6999999999999999987776432221 3443332221111 1100 00001122234567889999999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+++.. -.+-.++++.+.+. +.+++| +.|-.|
T Consensus 69 F~alp----------------~~~s~~~~~~l~~~-g~~~~V--IDlSsd 99 (147)
T d1mb4a1 69 ITCQG----------------GSYTEKVYPALRQA-GWKGYW--IDAAST 99 (147)
T ss_dssp EECSC----------------HHHHHHHHHHHHHT-TCCSEE--EESSST
T ss_pred EEecC----------------chHHHHHhHHHHHc-CCceEE--EeCCcc
Confidence 99864 35667788887775 455656 444443
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00012 Score=65.16 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHH-HHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a-~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
+||.|+||+|++|++++..|+..+.+.+ |.+ + .++........ ..+.... .++.-..+..++++++|+
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~---v~~--~--~R~~~~~~~~~~~~i~~~~----~D~~~~~~~~~~~~~~d~ 83 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSK---VTL--I--GRRKLTFDEEAYKNVNQEV----VDFEKLDDYASAFQGHDV 83 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSE---EEE--E--ESSCCCCCSGGGGGCEEEE----CCGGGGGGGGGGGSSCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCE---EEE--E--ecChhhhcccccceeeeee----eccccccccccccccccc
Confidence 4999999999999999999999886542 432 2 33322111000 0000000 001001235678899999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
|+.++|... ......++...|......+++...+.
T Consensus 84 vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~ 118 (232)
T d2bkaa1 84 GFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAG 118 (232)
T ss_dssp EEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred ccccccccc-cccchhhhhhhcccccceeeeccccc
Confidence 999887431 12234455667888888888887774
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00052 Score=63.42 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=67.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
+||.|+||+|++|++++..|+..+. +|.. + |. +.... ..+.+.......++.-.......+.++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~-----~V~~--~--d~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~d~ 68 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH-----EVTV--V--DNFFTGRK----RNVEHWIGHENFELINHDVVEPLYIEVDQ 68 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCSSCCG----GGTGGGTTCTTEEEEECCTTSCCCCCCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEE--E--eCCCcCCH----HHHHHhcCCCceEEEehHHHHHHHcCCCE
Confidence 5999999999999999999998874 2322 2 22 11111 11111110111122222334567789999
Q ss_pred EEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
||.+|+....+ ..+..+.+..|+.-...+.+.+++. . .++|.+|
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~--~k~I~~S 114 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-G--ARLLLAS 114 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEE
Confidence 99988754311 1244567888999999999988885 2 4555553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00043 Score=64.50 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc-ccc-hhhHHHHHHHHhhhcCCCcceEEEecCcc----ccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERS-LQALEGVAMELEDSLFPLLREVKIGINPY----ELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~-D~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----eal 170 (398)
|||.|+||+|+||++++..|+..+. +|.+ +|. ... ...+. .+++.......-+..-..++ +.+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-----~V~~--~d~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~l~~~~ 69 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVII--LDNLCNSKRSVLP----VIERLGGKHPTFVEGDIRNEALMTEIL 69 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTTHHH----HHHHHHTSCCEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EECCCCcchhhHH----HHHhhcCCCCEEEEeecCCHHHHHHHH
Confidence 6899999999999999999999874 2432 221 111 11111 11111101110011101122 344
Q ss_pred C--CCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q 015897 171 E--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (398)
Q Consensus 171 ~--dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~v 218 (398)
+ ++|+||.+|+....+- .+..+.+..|+.-...+.+.+++. +..-+|
T Consensus 70 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i 120 (338)
T d1udca_ 70 HDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFI 120 (338)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEE
T ss_pred hccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEE
Confidence 5 6899999987542111 134577888999999999999886 444443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.07 E-value=0.00055 Score=59.19 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=46.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHH--------HHhhhcCCCcceEEEecCccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLFPLLREVKIGINPYE 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~--------DL~d~~~~~~~~v~i~~~~~e 168 (398)
|||+||| .|.||..+|..++ .+. ++.. +|.|+++++..-. .+++.........+..++..+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~a-~g~-----~V~g----~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLLS-LQN-----EVTI----VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTS-----EEEE----ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEEC-CChhHHHHHHHHH-CCC-----cEEE----EECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhh
Confidence 7999999 6999999987554 443 2432 4677666543321 011110001123455667788
Q ss_pred ccCCCcEEEEeCCCC
Q 015897 169 LFEDAEWALLIGAKP 183 (398)
Q Consensus 169 al~dADiViitag~~ 183 (398)
+..++|+++++...|
T Consensus 70 ~~~~~~ii~v~vpt~ 84 (196)
T d1dlja2 70 AYKEAELVIIATPTN 84 (196)
T ss_dssp HHHHCSEEEECCCCC
T ss_pred hhhccccccccCCcc
Confidence 899999999886655
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=97.01 E-value=0.0057 Score=56.71 Aligned_cols=105 Identities=17% Similarity=0.057 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec------Ccccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYEL 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~------~~~ea 169 (398)
-.||.|+||+|+||++++..|++.|. .|.. + .++.++...... +.+..........+.. ...++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~-----~V~~-~---vR~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGY-----KVRG-T---ARSASKLANLQK-RWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE-E---ESSHHHHHHHHH-HHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE-E---eCCchhHHHHHH-hhhccccccccEEEeccccchhhhhhh
Confidence 46999999999999999999999875 2321 2 234444332221 1121111111111111 23478
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
++++|.|+..++... ...+.......|+.-...+.+.+.+.
T Consensus 81 ~~~~~~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~ 121 (342)
T d1y1pa1 81 IKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAAT 121 (342)
T ss_dssp TTTCSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchhhhhhccccc-ccccccccccchhhhHHHHHHhhhcc
Confidence 899999998876532 23344455666877788888888775
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.94 E-value=0.0014 Score=54.37 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=41.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
|||+||| .|++|+.++..|...+. ++.. ++.+ ........+.. . . +.....+++++||+|
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-----~v~~--~~~~-~~~~~~~~~~~----~-~------~~~~~~e~~~~~diI 60 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-----EVVT--SLEG-RSPSTIERART----V-G------VTETSEEDVYSCPVV 60 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-----EEEE--CCTT-CCHHHHHHHHH----H-T------CEECCHHHHHTSSEE
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-----eEEE--EcCc-hhHHHHHhhhc----c-c------ccccHHHHHhhcCeE
Confidence 6999999 69999999999999875 2432 3322 22222212211 1 1 122467889999999
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
|++.
T Consensus 61 i~~v 64 (152)
T d1i36a2 61 ISAV 64 (152)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9884
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.83 E-value=0.0012 Score=56.89 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEe--cCcccccC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIG--INPYELFE 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~--~~~~eal~ 171 (398)
+-++|.|+||+|.||..++..|+..|. .+.+ .+++.++++..+.++.... ... ....+. ....+.+.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-----chhh----cccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhc
Confidence 457999999999999999999999885 2544 4788888887777766432 111 122222 23457789
Q ss_pred CCcEEEEeCCCC
Q 015897 172 DAEWALLIGAKP 183 (398)
Q Consensus 172 dADiViitag~~ 183 (398)
++|+||.++|.+
T Consensus 92 ~iDilin~Ag~g 103 (191)
T d1luaa1 92 GAHFVFTAGAIG 103 (191)
T ss_dssp TCSEEEECCCTT
T ss_pred CcCeeeecCccc
Confidence 999999988753
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.0022 Score=52.85 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
-+|+||+|||+.|.+|..++..|...|.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~ 34 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGY 34 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCC
Confidence 3477999999669999999999998876
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.82 E-value=0.00065 Score=56.74 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=39.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~ 153 (398)
|||+||||+|.+|.++|..|+..|. +|.+ .++++++++..+.++....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-----~V~l----~~R~~e~~~~l~~~i~~~~ 48 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVV----GSRREEKAEAKAAEYRRIA 48 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC
Confidence 7999996679999999999999886 4654 3788899988888877654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.80 E-value=0.0016 Score=55.29 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
.+|+||| .|.+|+.|+..|+..|. .+.. + |++.++++....+-.... .. .......+..+.+.++|.+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l~~~~~~~~-~~-~~a~~~~~~~~~~~~~~~i 70 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCA--F--NRTVSKVDDFLANEAKGT-KV-LGAHSLEEMVSKLKKPRRI 70 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHHHHTTTTTS-SC-EECSSHHHHHHHBCSSCEE
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHHhccccc-cc-cchhhhhhhhhhhcccceE
Confidence 4799999 69999999999999886 3543 3 777777764443211100 00 0011122456788899999
Q ss_pred EEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 177 iitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+++... .+.+.++...+.....++.++|..|+
T Consensus 71 i~~~~~---------------~~~v~~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 71 ILLVKA---------------GQAVDNFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp EECSCT---------------THHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred EEecCc---------------hHHHHHHHHHHHhccccCcEEEecCc
Confidence 987432 23444555555555567777776664
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.78 E-value=0.0012 Score=53.49 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (398)
|||.|+|+ |.+|..++..|...|. ++.+ +|.|+++++....++. ..+..+. + ....+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~-----~v~v----id~d~~~~~~~~~~~~-------~~vi~Gd~~~~~~l~~~~i 63 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGH-----DIVL----IDIDKDICKKASAEID-------ALVINGDCTKIKTLEDAGI 63 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCS-------SEEEESCTTSHHHHHHTTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----Ccce----ecCChhhhhhhhhhhh-------hhhccCcccchhhhhhcCh
Confidence 79999995 9999999999988775 3443 4778787765443321 1121111 1 23457
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
++||.++.+... -..|+ +...++ +++ +++-++..+.||..
T Consensus 64 ~~a~~vv~~t~~-----------d~~N~-~~~~~~---k~~-~~~~iI~~~~~~~~ 103 (132)
T d1lssa_ 64 EDADMYIAVTGK-----------EEVNL-MSSLLA---KSY-GINKTIARISEIEY 103 (132)
T ss_dssp TTCSEEEECCSC-----------HHHHH-HHHHHH---HHT-TCCCEEEECSSTTH
T ss_pred hhhhhhcccCCc-----------HHHHH-HHHHHH---HHc-CCceEEEEecCHHH
Confidence 899998886432 13343 222333 344 46666666666643
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.77 E-value=0.0011 Score=61.87 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-----cCcccc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYEL 169 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-----~~~~ea 169 (398)
+.|||.|+||+|+||++++..|+.++. .|.. + |+.... ....++. ..++... ....+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-----~V~~--~--d~~~~~--~~~~~~~------~~~~~~~D~~~~~~~~~~ 76 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH-----YVIA--S--DWKKNE--HMTEDMF------CDEFHLVDLRVMENCLKV 76 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCCS--SSCGGGT------CSEEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--E--eCCCcc--chhhhcc------cCcEEEeechhHHHHHHH
Confidence 468999999999999999999999875 2332 2 322111 0000000 0112211 123456
Q ss_pred cCCCcEEEEeCCCCCCC---CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 170 FEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 170 l~dADiViitag~~rk~---g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+++.|.||.+++..... ...-......|......+.....+. + --.+|..|
T Consensus 77 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~-vk~~i~~S 130 (363)
T d2c5aa1 77 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-G-IKRFFYAS 130 (363)
T ss_dssp HTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-T-CSEEEEEE
T ss_pred hhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhh-C-cccccccc
Confidence 78999999987643211 1233445677888888888888775 2 23455444
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.76 E-value=0.0054 Score=55.04 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=74.4
Q ss_pred CEE-EEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------C
Q 015897 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (398)
Q Consensus 97 ~KI-~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (398)
+|| .|+||++.+|..++..|+..|. .|.+ .|+++++++..+.+|++...... ....++. .
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~ 71 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 71 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 366 5679999999999999999886 3554 47888999988888875421100 0111111 1
Q ss_pred cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ~~eal~dADiViitag~~r-k~g--~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+..-|++|..+|... .+- ++.. ..+..|+ -+.+...+.+.+. +..+.|++++--
T Consensus 72 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 139 (255)
T d1gega_ 72 ARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACSQ 139 (255)
T ss_dssp HHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhh-ccccccccccch
Confidence 2345678999999888653 221 2222 2344553 3456667777775 567888887744
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.75 E-value=0.00045 Score=63.84 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=98.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-ec------Ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~ea 169 (398)
|||.|+||+|+||++++..|+..+.--.. ...+..+|.-..... ...+.... ....+.+ .. .....
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~-~~~i~~~d~~~~~~~----~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~ 73 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVP-ADEVIVLDSLTYAGN----RANLAPVD--ADPRLRFVHGDIRDAGLLARE 73 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSC-CSEEEEEECCCTTCC----GGGGGGGT--TCTTEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccC-CceEEEEeCCCcccc----HhHhhhhh--cCCCeEEEEeccccchhhhcc
Confidence 69999999999999999999998752110 011111211100000 01111111 0011221 11 13456
Q ss_pred cCCCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH---HHHHHCCCCCCceE
Q 015897 170 FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL---ICLKNAPSIPAKNF 244 (398)
Q Consensus 170 l~dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~---~~~k~~~~~~~kvi 244 (398)
..+.|+|+..++.+.... ....+.+..|+.....+.+.+.++ .. ..+|..|.-.-.-.. -+-+.++ ..+...
T Consensus 74 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~-~~~I~~Ss~~~yg~~~~~~~~E~~~-~~p~~~ 150 (322)
T d1r6da_ 74 LRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GV-GRVVHVSTNQVYGSIDSGSWTESSP-LEPNSP 150 (322)
T ss_dssp TTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TC-CEEEEEEEGGGGCCCSSSCBCTTSC-CCCCSH
T ss_pred ccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CC-ceEEEeecceeecCCCCCCCCCCCC-CCCCCH
Confidence 789999999887653221 233456788999999999999886 33 345544422100000 0001111 111110
Q ss_pred EecCchhHHHHHHHHHHHcCcCcCceeeEEEEec--cCCCccccccceEEcCccch
Q 015897 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN--HSTTQVPDFLNARINGLPVK 298 (398)
Q Consensus 245 g~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~--Hg~s~vp~~S~a~I~G~p~~ 298 (398)
=+.+-+-.-.+-..++++.|++...++...|.|. +++..+|.|-..-+.|.++.
T Consensus 151 Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~ 206 (322)
T d1r6da_ 151 YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLP 206 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcE
Confidence 0111122233444456677888888877778894 34556777655444555543
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.73 E-value=0.004 Score=53.07 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceE-EEecccccc-hhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIA-LKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~-L~L~d~D~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
|+||+|+||+|.+|..++..|...+-+. |. |...-.+.+ .+.+...--.+.. .....+....+......++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~e----i~~l~~~s~~~~aGk~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 73 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMT----ITALTVSAQSNDAGKLISDLHPQLKG---IVDLPLQPMSDVRDFSADV 73 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEE----EEEEEEETTCTTTTCBHHHHCGGGTT---TCCCBEEEESCGGGTCTTC
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCc----eEeeEeeccccccccccccccccccc---ccccccccchhhhhhhccc
Confidence 7899999999999999999998876432 32 211100111 1122211111110 0111233334555667899
Q ss_pred cEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 174 DiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+|+++.+ -..-.++.+.+.+ .+.+||-.+
T Consensus 74 dvvf~alp----------------~~~s~~~~~~~~~---~~~~vIDlS 103 (179)
T d2g17a1 74 DVVFLATA----------------HEVSHDLAPQFLQ---AGCVVFDLS 103 (179)
T ss_dssp CEEEECSC----------------HHHHHHHHHHHHH---TTCEEEECS
T ss_pred ceeecccc----------------chhHHHHhhhhhh---cCceeeccc
Confidence 99999854 2344455555554 366665444
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.72 E-value=0.00024 Score=61.30 Aligned_cols=165 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+|.+|.|+||+|++|++++..|+..+. .+.+ .+..++++.+. ++.....-...+..-.....++++++|
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~-----~v~v--~~~~R~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~d 70 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSD-----KFVA--KGLVRSAQGKE----KIGGEADVFIGDITDADSINPAFQGID 70 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTT-----TCEE--EEEESCHHHHH----HTTCCTTEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----cEEE--EEEcCCHHHHH----hccCCcEEEEeeeccccccccccccce
Confidence 478999999999999999999998874 2322 12345554432 222111000001100112457789999
Q ss_pred EEEEeCCCCC--CC-------C------CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCC
Q 015897 175 WALLIGAKPR--GP-------G------MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239 (398)
Q Consensus 175 iViitag~~r--k~-------g------~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~ 239 (398)
.||.+++... .+ . .........|..-.+.+....... ...-.. ..+.. .. ..+..
T Consensus 71 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~s~~-~~-------~~~~~ 140 (252)
T d2q46a1 71 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIV-VVGSM-GG-------TNPDH 140 (252)
T ss_dssp EEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEE-EEEET-TT-------TCTTC
T ss_pred eeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-cccccc-ccccc-cc-------CCCCc
Confidence 9998875431 10 0 012223444444455555555554 233222 22211 10 00111
Q ss_pred CCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccC
Q 015897 240 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280 (398)
Q Consensus 240 ~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg 280 (398)
+..............+...+.+..|++..-++.-.++|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~ 181 (252)
T d2q46a1 141 PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG 181 (252)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT
T ss_pred ccccccccchhhhhhhhhhhhhcccccceeecceEEECCCc
Confidence 11111122223345556666677777766666556677653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0082 Score=53.69 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=76.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc--eEEEec---------C
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIGI---------N 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~--~v~i~~---------~ 165 (398)
+.+.|+||++.+|..++..|+..|. .|.+ .|+++++++..+.++.... +... ...++. .
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~-----~V~l----~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKS-----KLVL----WDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHH
Confidence 4677779999999999999999986 3544 4788999998888887532 1110 011110 0
Q ss_pred cccccCCCcEEEEeCCCCCCCC-C-chh----hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCchh
Q 015897 166 PYELFEDAEWALLIGAKPRGPG-M-ERA----GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (398)
Q Consensus 166 ~~eal~dADiViitag~~rk~g-~-~r~----dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (398)
-.+.+..-|++|..+|...... . ... +++..| .-..+.+.+.+.+. ..+.||+++-....
T Consensus 78 i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~G~Iv~isS~~~~ 147 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAAGH 147 (244)
T ss_dssp HHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC-C
T ss_pred HHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc--CCceEEEeecchhc
Confidence 1246778999999888753222 1 121 233333 44677788888874 57888888766543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.013 Score=52.62 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=76.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-Eec---C-------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI---N------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~---~------- 165 (398)
+.+.|+||++.||.+++..|+..|. .|++ .++++++++..+.++.....+ .++. +.. +
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~ 79 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILSM 79 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC--ceEEEEEccCCCHHHHHHH
Confidence 5788999999999999999999886 2544 378888999888888764321 1111 111 1
Q ss_pred ---cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 ---PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ---~~eal~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+..-|++|..+|... .+- .+.. ..+..| .-+.+.+.+.+.+....++.||+++-.
T Consensus 80 v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~ 151 (257)
T d1xg5a_ 80 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM 151 (257)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred HHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEech
Confidence 2344677899999887653 221 2221 223444 446677788877753346888888643
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.62 E-value=0.0033 Score=52.01 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+|+||+|.+|..++..|...+.-. .++. ++....+..+ . +. ....+..+..-+.+.+.++|+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~--~~l~--~~~s~~~~Gk----~--i~----~~~~~~~~~~~~~~~~~~~d~ 67 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPL--HRLH--LLASAESAGQ----R--MG----FAESSLRVGDVDSFDFSSVGL 67 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCC--SCEE--EEECTTTTTC----E--EE----ETTEEEECEEGGGCCGGGCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCc--eEEE--EEeecccCCc----c--ee----eccccchhccchhhhhccceE
Confidence 5899999999999999999887543211 1243 3322222111 0 11 011234444456788899999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
++++.+
T Consensus 68 vf~a~p 73 (144)
T d2hjsa1 68 AFFAAA 73 (144)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 999764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.58 E-value=0.003 Score=56.75 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=75.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++.+....+..+++-. ..-.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGA-----KVVF----GDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999886 3554 47888899888888765431111111100 012344
Q ss_pred cCCCcEEEEeCCCCC-CC--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 170 FEDAEWALLIGAKPR-GP--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 170 l~dADiViitag~~r-k~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
+..-|++|..+|... .+ .++.. +.+..| .-+.+...+.+.+. .++.||+++-...
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~~ 142 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSIEG 142 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGG
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc--CcceEEecccccc
Confidence 567899999888653 22 12222 234444 33566677777774 5788888876543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.57 E-value=0.018 Score=48.37 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=33.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHH
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~D 148 (398)
|||+||| .|.+|+.++..|+..+. +|.. + |+++++++....+
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~-----~V~~--~--dr~~~~~~~l~~~ 43 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAV--F--NRTYSKSEEFMKA 43 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHHHHc
Confidence 6899999 69999999999999885 3543 3 7787877766554
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.57 E-value=0.0028 Score=57.15 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-------Cccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~e 168 (398)
-+++.|+||++.||.+++..|+..|. .|++ .|++++.++..+.++......+..+++-.. .-.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGA-----RVAI----ADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTE-----EEEE----EESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 35788889999999999999999885 3554 378888888888877532211111111000 1224
Q ss_pred ccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 al~dADiViitag~~r-k~g--~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+..-|++|..+|... .+- ++.. ..+..|+ -+.+..++.+.+. ...+.||+++--.
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~-~~~g~Iv~isS~~ 141 (256)
T d1k2wa_ 76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAG-GRGGKIINMASQA 141 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCGG
T ss_pred HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHh-ccCCccccccchh
Confidence 4567899999888653 221 2222 2355553 4556677776664 4578888887443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.0056 Score=57.24 Aligned_cols=112 Identities=8% Similarity=0.017 Sum_probs=61.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-----hhhHHHHHHHHhhhcCCCcceEEEecC---c---
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----LQALEGVAMELEDSLFPLLREVKIGIN---P--- 166 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-----~~~l~g~a~DL~d~~~~~~~~v~i~~~---~--- 166 (398)
+|.|+||+|+||++++..|+..|. +|.. +|+. .++++....+.. ....++.+... +
T Consensus 3 ~vLITGatGfiGs~lv~~Ll~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~ 69 (357)
T d1db3a_ 3 VALITGVTGQDGSYLAEFLLEKGY-----EVHG----IKRRASSFNTERVDHIYQDPH----TCNPKFHLHYGDLSDTSN 69 (357)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECC-------------------------CCEEECCCCSSCHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----EEEE----EECCCcccchhhHHHHHhhhh----hcCCCeEEEEeecCCHHH
Confidence 344999999999999999999874 2321 2432 233322222111 11123333222 2
Q ss_pred -ccccCCC--cEEEEeCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHhcCC-CeEEEEEC
Q 015897 167 -YELFEDA--EWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVG 222 (398)
Q Consensus 167 -~eal~dA--DiViitag~~r--k~g~~r~dll~~N~~i~~~i~~~i~~~a~p-~a~vIvvt 222 (398)
.+.+++. |+|+.+++... ....+.......|+.-...+.+.+++.+.. ...+|.+|
T Consensus 70 ~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S 131 (357)
T d1db3a_ 70 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131 (357)
T ss_dssp HHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 2344444 99999987653 233445567788988888888888876322 34566544
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=96.50 E-value=0.00038 Score=65.02 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEEEecC-------cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGIN-------PY 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~ 167 (398)
||||.|+||+|+||++++..|+..+. .+.+.. +|. +...-. ..+.... ..++..... ..
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~-----~v~v~~--~d~~~~~~~~---~~~~~~~---~~~i~~~~~Di~d~~~~~ 68 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHP-----DVHVTV--LDKLTYAGNK---ANLEAIL---GDRVELVVGDIADAELVD 68 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCT-----TCEEEE--EECCCTTCCG---GGTGGGC---SSSEEEEECCTTCHHHHH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCC-----CeEEEE--EeCCCccccH---HHHHHhh---cCCeEEEEccCCCHHHHH
Confidence 78999999999999999999998874 122211 231 100000 0111111 112222211 24
Q ss_pred cccCCCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHh
Q 015897 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 168 eal~dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
+++++.|.|+..++...... .+..+.+..|+.-...+.....+.
T Consensus 69 ~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~ 114 (346)
T d1oc2a_ 69 KLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY 114 (346)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc
Confidence 56788999888876543222 123467788999999998888886
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.004 Score=55.67 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe---cCcccccCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFED 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~eal~d 172 (398)
-+++.|+||++.+|.+++..|+..|. .|.+ .|++++.++..+.++.... .+..++.-. ..-.+.+..
T Consensus 7 GK~~lITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVA----VSRTQADLDSLVRECPGIE-PVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHhCC
Confidence 46899999999999999999999885 3544 4788888887777765422 111111000 012356778
Q ss_pred CcEEEEeCCCCC-CCC--Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 173 AEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 173 ADiViitag~~r-k~g--~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-|++|..+|... ++- .+.. ..+..|+ .+.+.+.+.+.+. ...+.||+++--
T Consensus 77 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~Ii~isS~ 137 (244)
T d1pr9a_ 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQ 137 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred ceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHh-CCcceEeecccc
Confidence 999999888653 221 2222 2344443 3566677765554 456888887743
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.49 E-value=0.0094 Score=53.37 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=73.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~~ 166 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|++++.++..+.++++...... ....++. .-
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4566779999999999999998885 2544 37888999988888875421100 0011110 01
Q ss_pred ccccCCCcEEEEeCCCCCC-CC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPRG-PG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~rk-~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+..-|++|..+|.... +- .+.. ..+..| ..+.+...+.+.+. ..|.||+++--
T Consensus 82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~ 147 (251)
T d2c07a1 82 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSI 147 (251)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC--CCeEEEEECCH
Confidence 3455789999998876532 21 2222 234444 34567777788874 57888888744
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.49 E-value=0.0056 Score=57.54 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc-c------cchhhHHHHHHHHhhhcCC----CcceEEEecC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-E------RSLQALEGVAMELEDSLFP----LLREVKIGIN 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~-D------~~~~~l~g~a~DL~d~~~~----~~~~v~i~~~ 165 (398)
|||.|+||+|+||++++..|+..+-. .|.. +|. . ...+..+.....+...... ....+.+...
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~----~V~~--~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNH----SVVI--VDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVG 76 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC----EEEE--EECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCC----EEEE--EecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEEC
Confidence 59999999999999999999864311 2322 220 0 0112223333333332211 1122332222
Q ss_pred c----------ccccCCCcEEEEeCCCCCCCCC--chhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q 015897 166 P----------YELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (398)
Q Consensus 166 ~----------~eal~dADiViitag~~rk~g~--~r~dll~~N~~i~~~i~~~i~~~a~p~a~v 218 (398)
| .+..+.+|+|+.+|+....+.. ........|......+.....+. +....+
T Consensus 77 Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~ 140 (383)
T d1gy8a_ 77 DVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKII 140 (383)
T ss_dssp CTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred cccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCcccc
Confidence 1 1234578999999875432111 23345677899999998888886 444443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.47 E-value=0.014 Score=52.88 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=73.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC----------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~---------- 165 (398)
+++.|+||++.||.+++..|+..|. .|++ .|+++++++..+.++...... ..++. +..|
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~i~~~~~~-~~~~~~~~~Dv~~~~~v~~~ 74 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGA-----QVTI----TGRNEDRLEETKQQILKAGVP-AEKINAVVADVTEASGQDDI 74 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcCCC-CcceEEEEeeCCCHHHHHHH
Confidence 5788999999999999999999885 3554 378888999888888764311 11221 1111
Q ss_pred ---cccccCCCcEEEEeCCCCCCCC-----Cchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ---PYELFEDAEWALLIGAKPRGPG-----MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ---~~eal~dADiViitag~~rk~g-----~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..+.+..-|++|..+|.....+ ++..+ .+..| ..+.+...+.+.+ ..++.|++.+
T Consensus 75 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~g~ii~~s 144 (274)
T d1xhla_ 75 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK--TKGEIVNVSS 144 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEECC
T ss_pred HHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc--cccccccchh
Confidence 1234557899999887643221 12221 23344 3356777777776 3677777765
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=96.47 E-value=0.003 Score=57.50 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=64.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCc----ccccCC
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----YELFED 172 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~----~eal~d 172 (398)
||.|+||+|+||++++..|+..|. .|.. +| +.+..........+.... .+ ++... ..+ .+++++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~-----~V~~--id-~~~~~~~~~~~~~~~~~~-~~--~~i~~Di~~~~~l~~~~~~ 70 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI-----DLIV--FD-NLSRKGATDNLHWLSSLG-NF--EFVHGDIRNKNDVTRLITK 70 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EE-CCCSTTHHHHHHHHHTTC-CC--EEEECCTTCHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-----EEEE--EE-CCCcccchhHHHHhhccC-Cc--EEEEcccCCHHHHHHHHHh
Confidence 899999999999999999999875 2322 22 121111111112222111 11 11111 112 344444
Q ss_pred C--cEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 173 A--EWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 173 A--DiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
. |+||.+++....+. .+..+....|+.-...+.+.+.+. +..-.++..|
T Consensus 71 ~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS 123 (338)
T d1orra_ 71 YMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSS 123 (338)
T ss_dssp HCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred cCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccc
Confidence 3 99999887543221 234567788999999999988886 4444554444
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0037 Score=55.90 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=72.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (398)
+.+.|+||++.+|.+++..|+..|. .|.+ .|++++.++..+.++......+..+++-. ..-.+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~-----~Vv~----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGA-----KVIG----TATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 4667779999999999999999885 2544 47888888888877753221111111100 012245
Q ss_pred cCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 170 FEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 170 l~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+..-|++|..+|... ++- .+.. ..+..| ..+.+...+.+.+. .+|.||+++-
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~II~isS 137 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK--RHGRIITIGS 137 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc--CCCEeeeecc
Confidence 568999999887653 221 1222 224444 44677777888774 5788888874
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.44 E-value=0.00096 Score=57.73 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||.|+||+|++|++++..|+..+...+ |. . .-++... +........ .+ +.........+.|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~---v~--~--~~r~~~~------~~~~~~~~~-~d--~~~~~~~~~~~~d~ 65 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAK---VI--A--PARKALA------EHPRLDNPV-GP--LAELLPQLDGSIDT 65 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCE---EE--C--CBSSCCC------CCTTEECCB-SC--HHHHGGGCCSCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEE---EE--E--EeCCchh------hcccccccc-cc--hhhhhhccccchhe
Confidence 46999999999999999999998875321 21 1 1221100 000000000 00 00012233456799
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
|+.+.|..........++...|......+++..++. .--.++.+|
T Consensus 66 vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~v~~~i~~S 110 (212)
T d2a35a1 66 AFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM--GARHYLVVS 110 (212)
T ss_dssp EEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eeeeeeeeccccccccccccchhhhhhhcccccccc--ccccccccc
Confidence 999877653222334456667777777788777764 333455555
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.44 E-value=0.002 Score=54.31 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..||.|||| |.+|..++..|...+.- .+.+ ..++.++++..+.++.... ....+..+.+.++|
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~----~i~v----~nRt~~ka~~l~~~~~~~~-------~~~~~~~~~l~~~D 86 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGVR----AVLV----ANRTYERAVELARDLGGEA-------VRFDELVDHLARSD 86 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCS----EEEE----ECSSHHHHHHHHHHHTCEE-------CCGGGHHHHHHTCS
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCCc----EEEE----EcCcHHHHHHHHHhhhccc-------ccchhHHHHhccCC
Confidence 4579999995 99999999999988751 2444 3788888877777654211 12245678899999
Q ss_pred EEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhc-CCCeEEEEECCCchh
Q 015897 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNT 227 (398)
Q Consensus 175 iViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a-~p~a~vIvvtNP~d~ 227 (398)
+||.+.+.+. |-.++ ..++ ..+++.. ...-++|=.+.|-|+
T Consensus 87 ivi~atss~~-~ii~~--------~~i~---~~~~~r~~~~~~~iiDlavPr~v 128 (159)
T d1gpja2 87 VVVSATAAPH-PVIHV--------DDVR---EALRKRDRRSPILIIDIANPRDV 128 (159)
T ss_dssp EEEECCSSSS-CCBCH--------HHHH---HHHHHCSSCCCEEEEECCSSCSB
T ss_pred EEEEecCCCC-ccccH--------hhhH---HHHHhcccCCCeEEEeecCCCCc
Confidence 9999765442 11111 1222 2223220 123578888999654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.01 Score=53.19 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (398)
-+.+.|+||++.||.+++..|+..|. .|.+ .|+++++++..+.+|.+.. +. ++. +..|
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-g~--~~~~~~~Dv~~~~~v~~ 72 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVV----ASRNLEEASEAAQKLTEKY-GV--ETMAFRCDVSNYEEVKK 72 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-CC--CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHHh-CC--cEEEEEccCCCHHHHHH
Confidence 35788999999999999999999985 3554 3778888887777776532 11 111 1111
Q ss_pred ----cccccCCCcEEEEeCCCCC-CCC--Cchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ----PYELFEDAEWALLIGAKPR-GPG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ----~~eal~dADiViitag~~r-k~g--~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
-.+.+..-|++|..+|..+ .+- ++..+ .+..| ..+.+...+.|.+. ..+.+|+++
T Consensus 73 ~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~i~ 141 (251)
T d1vl8a_ 73 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIG 141 (251)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--ccccccccc
Confidence 1244567899999988653 331 22222 24444 44677777788774 566666664
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.40 E-value=0.0053 Score=54.85 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe---cCcccccCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFED 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~eal~d 172 (398)
-+++.|+||++.+|..++..|+..|. .|.+ .|++++.++..+.++.... .+..+++-. ..-.+.+..
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGA-----KVVA----VTRTNSDLVSLAKECPGIE-PVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHcCC
Confidence 46888999999999999999999885 3554 3778888877777665332 111111000 012345678
Q ss_pred CcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 173 AEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 173 ADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-|++|..+|... ++- ++.. ..+..| ..+.+...+.+.+. ..++.+|+++--
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~ii~isS~ 135 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSSM 135 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhh-cccCcccccchh
Confidence 999999988653 221 2222 234444 33555666665554 456788877754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00044 Score=64.22 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE--EecC---cccccC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK--IGIN---PYELFE 171 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~--i~~~---~~eal~ 171 (398)
|||.|+||+|+||++++..|+..+.. +|. . +|....... ++.+. +...-+. ++.. ....++
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~----~V~--~--ld~~~~~~~----~~~~~--~~~~~i~~Di~~~~~~~~~~~~ 66 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHY----EVY--G--LDIGSDAIS----RFLNH--PHFHFVEGDISIHSEWIEYHVK 66 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC----EEE--E--EESCCGGGG----GGTTC--TTEEEEECCTTTCSHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC----EEE--E--EeCCCcchh----hhccC--CCeEEEECccCChHHHHHHHHh
Confidence 69999999999999999999887732 132 2 243322111 11111 1100011 1111 123677
Q ss_pred CCcEEEEeCCCCCCCCC--chhhhHHHHHHHHHHHHHHHHHh
Q 015897 172 DAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 172 dADiViitag~~rk~g~--~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
++|+||.+++....++. .-......|+.....+.+.+.+.
T Consensus 67 ~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 108 (342)
T d2blla1 67 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 108 (342)
T ss_dssp HCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred CCCccccccccccccccccCCccccccccccccccccccccc
Confidence 89999998876432221 22456788999999999998885
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.36 E-value=0.027 Score=50.44 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=74.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~~ 166 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|++++.++..+.++++...... ....++. ..
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGT-----AIAL----LDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5788889999999999999999885 3554 47888899888888775321100 0011110 12
Q ss_pred ccccCCCcEEEEeCCCCC--CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKPR--GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~r--k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+..-|++|..+|... .+- ++.. ..+..| .-+.+...+.+.+. ..|.||+++-.
T Consensus 77 ~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~II~isS~ 143 (260)
T d1zema1 77 VRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASM 143 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh--cCCCCCeeech
Confidence 355678999999888643 221 2222 234444 33566777777764 67888888743
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.35 E-value=0.00065 Score=56.67 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=46.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||.|+|| |.+|.++|..|...|. .|.+ +|++.++++..+..+..... ............+.+...|++
T Consensus 3 K~IliiGa-G~~G~~~a~~L~~~g~-----~V~v----~dr~~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 71 (182)
T d1e5qa1 3 KSVLMLGS-GFVTRPTLDVLTDSGI-----KVTV----ACRTLESAKKLSAGVQHSTP-ISLDVNDDAALDAEVAKHDLV 71 (182)
T ss_dssp CEEEEECC-STTHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHTTCTTEEE-EECCTTCHHHHHHHHTTSSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECChHHHHHHHhccccccc-ccccccchhhhHhhhhcccee
Confidence 58999995 9999999999998875 3654 58888887765544332110 000000001234567888888
Q ss_pred EEeC
Q 015897 177 LLIG 180 (398)
Q Consensus 177 iita 180 (398)
+.+.
T Consensus 72 i~~~ 75 (182)
T d1e5qa1 72 ISLI 75 (182)
T ss_dssp EECS
T ss_pred Eeec
Confidence 8754
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.29 E-value=0.03 Score=50.16 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=73.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC----------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~---------- 165 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|+++++++....++...... .++. +..|
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~~~~~~~--~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGA-----KLSL----VDVSSEGLEASKAAVLETAPD--AEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHCTT--CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhCCC--CeEEEEeccCCCHHHHHHH
Confidence 4788889999999999999999985 3554 478888888777777654311 1111 1111
Q ss_pred ---cccccCCCcEEEEeCCCCC--CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 166 ---PYELFEDAEWALLIGAKPR--GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 166 ---~~eal~dADiViitag~~r--k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
-.+.+..-|++|..+|... .+- ++.. ..+..| .-+.+...+.+.+. ..+.||+++--.
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 145 (258)
T d1iy8a_ 74 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASVG 145 (258)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCGG
T ss_pred HHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh--cCCCCcccccHh
Confidence 1244568999999988542 221 2222 234444 34566667777764 567777777443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=96.28 E-value=0.0056 Score=55.17 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (398)
-+++.|+||++.||.+++..|+..|. .|.+ .|+++++++..+.++......+..+++-. ..-.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVL----ADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 35889999999999999999999885 3554 37888888877777653321111111000 01224
Q ss_pred ccCCCcEEEEeCCCCC-CCC--Cch---hhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 al~dADiViitag~~r-k~g--~~r---~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+..-|++|..+|... .+- ++. ...+..| .-+.+.+.+.+.+. ..+.||+++--.
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--~~G~II~isS~~ 140 (254)
T d1hdca_ 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSAA 140 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc--CCCeecccccch
Confidence 4568999999888653 221 121 2334544 34567777777774 578888888443
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.27 E-value=0.0075 Score=56.75 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhH----------------HHHHHHHhhhcCCCcceE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL----------------EGVAMELEDSLFPLLREV 160 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l----------------~g~a~DL~d~~~~~~~~v 160 (398)
|||.|+||+|+||++++..|+..|. .|.. + |--..+. ......+.... . .++
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~-----~V~~--i--Dnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~i 69 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY-----EVCI--V--DNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-G--KSI 69 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-C--CCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEE--E--ecCCcccccccccccccccccchHHHHHHHHhhc-C--CCc
Confidence 6999999999999999999999885 2432 2 3100000 00001111100 0 122
Q ss_pred EEec-C--c----ccccC--CCcEEEEeCCCCCCC--CCc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 161 KIGI-N--P----YELFE--DAEWALLIGAKPRGP--GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 161 ~i~~-~--~----~eal~--dADiViitag~~rk~--g~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+.. | + .++++ +.|+|+..|+....+ -.+ -.+....|+.-...+.+.+.++ +.+..++..+.
T Consensus 70 ~~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~~i~~ss 145 (393)
T d1i24a_ 70 ELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGT 145 (393)
T ss_dssp EEEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECC
T ss_pred EEEEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHh-ccccceeeccc
Confidence 2211 1 1 23344 349999988754211 122 2356778899899999999987 57777766664
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.027 Score=50.42 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC---------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--------- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--------- 165 (398)
+-+++.|+||++.+|.+++..|+..|. .|.+ .|+++++++..+.++++.. ... ..+..|
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~l~~~g-~~~--~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLG-GQA--FACRCDITSEQELSA 77 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHTT-CCE--EEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcC-CcE--EEEEccCCCHHHHHH
Confidence 346888889999999999999999885 3554 3788888888888887532 110 111111
Q ss_pred ----cccccCCCcEEEEeCCCCC-CC-CCchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 ----PYELFEDAEWALLIGAKPR-GP-GMERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ----~~eal~dADiViitag~~r-k~-g~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
..+.+..-|++|..+|... ++ .++..+ .+..| .-+.+...+.+.+. .++.||+++-
T Consensus 78 ~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Ii~isS 146 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITS 146 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc--cccccccccc
Confidence 1344678999999888653 22 223322 24444 34567778888885 5677777764
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=96.22 E-value=0.00045 Score=61.99 Aligned_cols=100 Identities=18% Similarity=0.095 Sum_probs=58.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--CCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (398)
|||.|+||+|+||++++..|...+. .+.+ +....... .||.+.. ...+.++ +.|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-----~v~~-----~~~~~~~~---~Dl~~~~-----------~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-----LIAL-----DVHSKEFC---GDFSNPK-----------GVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-----EEEE-----CTTCSSSC---CCTTCHH-----------HHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE-----ECCCcccc---CcCCCHH-----------HHHHHHHHcCCC
Confidence 7899999999999999998877653 2332 22211100 1111100 0112232 359
Q ss_pred EEEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 175 WALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 175 iViitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+||.+|+.... ...........|......+....++. +.+++.++.
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~~ss 104 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET---GAWVVHYST 104 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT---TCEEEEEEE
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcc---ccccccccc
Confidence 99999875421 12344456677877778887777764 455665553
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.21 E-value=0.024 Score=51.09 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=72.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC----------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~---------- 165 (398)
+++.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++.+.... ..++. +..|
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga-----~V~l----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvs~~~~v~~~ 75 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGA-----NVTI----TGRSSERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQDQI 75 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-CCceEEEEccCCCHHHHHHH
Confidence 4788889999999999999999885 3554 478889999888888764311 11221 1111
Q ss_pred ---cccccCCCcEEEEeCCCCCC-C-CC-----chh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ---PYELFEDAEWALLIGAKPRG-P-GM-----ERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ---~~eal~dADiViitag~~rk-~-g~-----~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
-.+.+..-|++|..+|.... + .. +.. ..+..|. .+.+...+.+.+. .+++|++.|
T Consensus 76 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (272)
T d1xkqa_ 76 INSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGEIVNVSS 147 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCccccccc
Confidence 22445678999998886532 1 11 111 1234443 3567777777763 567776665
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.19 E-value=0.0025 Score=54.80 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=44.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
.+++||+|+||+|.+|.-++..|.....+ .|..+..+.+..+.- .+....... ...........+.++++
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~------ei~~l~S~~~aG~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~ 72 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQF------RIKVMTADRKAGEQF---GSVFPHLIT-QDLPNLVAVKDADFSNV 72 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSE------EEEEEECSTTTTSCH---HHHCGGGTT-SCCCCCBCGGGCCGGGC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCc------eEEEEeccccCCCcc---ccccccccc-cccccchhhhhhhhccc
Confidence 34689999999999999999999886543 332232333322211 111111101 11111222345667899
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++.
T Consensus 73 Dvvf~al 79 (183)
T d2cvoa1 73 DAVFCCL 79 (183)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 9999874
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.13 E-value=0.014 Score=48.14 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=39.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEE
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVi 177 (398)
||++|| .|.+|..++..|+..+. ... + +++.++......+ .. . .....+.+.++|++|
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~------~~~--~--~~~~~~~~~~~~~---~~-~-------~~~~~~~~~~~~~~i 59 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP------TLV--W--NRTFEKALRHQEE---FG-S-------EAVPLERVAEARVIF 59 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC------EEE--E--CSSTHHHHHHHHH---HC-C-------EECCGGGGGGCSEEE
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC------EEE--E--eCCHHHHHHHHHH---cC-C-------cccccccccceeEEE
Confidence 799999 69999999999987653 222 2 3333433322222 11 0 124567888999988
Q ss_pred EeC
Q 015897 178 LIG 180 (398)
Q Consensus 178 ita 180 (398)
++.
T Consensus 60 ~~~ 62 (156)
T d2cvza2 60 TCL 62 (156)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.07 E-value=0.0071 Score=54.20 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=74.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~~ 166 (398)
+++.|+||++.||..++..|+..|. .|.+ .|++++.++..+.++.... ... ....++. .-
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGA-----KVMI----TGRHSDVGEKAAKSVGTPD-QIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCC-cEEEEEccCCCHHHHHHHHHHH
Confidence 5777889999999999999999885 3554 3778888887777765321 100 0011110 12
Q ss_pred ccccCCCcEEEEeCCCC-CCC--CCchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 167 YELFEDAEWALLIGAKP-RGP--GMERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 167 ~eal~dADiViitag~~-rk~--g~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+.+..-|++|..+|.. +++ .++..+ .++.| ....+...+.|.+. +.++.||+++--.
T Consensus 77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~-~~gg~Ii~isS~~ 144 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSIE 144 (251)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCGG
T ss_pred HHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhc-CCCCceEeeeccc
Confidence 34556789999988764 332 123332 34444 34567777788775 4567888887543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0087 Score=53.68 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-------ecCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-------~~~~~e 168 (398)
-+.+.|+||++.||.+++..|+..|. .|.+ .|++++.++..+.++.+.. .+..+++- .....+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~~~~~~-~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGA-----RVVI----CDKDESGGRALEQELPGAV-FILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEccCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999885 3554 4788888887777765432 11111100 011234
Q ss_pred ccCCCcEEEEeCCCCCCCC----Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPRGPG----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~rk~g----~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+..-|++|..+|....++ .+.. ..++.| ..+.+...+.|++. ++.||+++-.
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~Ii~isS~ 139 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSL 139 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCH
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC---CCCCcccccc
Confidence 5567899999888543222 2222 224444 44577777788763 4677777743
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.99 E-value=0.035 Score=49.66 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN-------- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~-------- 165 (398)
+-+++.|+||++.||.+++..|+..|. .|.+ .|+++++++..+.++.... . ++. +..|
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dv~~~~~v~ 73 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-----SVYT----CSRNQKELNDCLTQWRSKG-F---KVEASVCDLSSRSERQ 73 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---CceEEEeeCCCHHHHH
Confidence 345788999999999999999999885 3554 4788889988888876532 1 111 1111
Q ss_pred -----cccccC-CCcEEEEeCCCCC-CCC--Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 -----PYELFE-DAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 -----~~eal~-dADiViitag~~r-k~g--~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+. .-|++|..+|... .+- ++.. ..+..|+ .+.+...+.+.+ ..++.||+++--
T Consensus 74 ~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~Ii~isS~ 146 (259)
T d2ae2a_ 74 ELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA--SERGNVVFISSV 146 (259)
T ss_dssp HHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TSSEEEEEECCG
T ss_pred HHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh--hccccccccccc
Confidence 123344 4799999888653 221 2222 2345553 345666677776 367888888743
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0019 Score=53.14 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=38.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEEEE
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVii 178 (398)
|++|| +|++|++++..|..++.. ..+ .+++.++++..+..+.. ...+..++++.+|+||+
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~-----~~v----~~R~~~~~~~l~~~~~~----------~~~~~~~~~~~~DiVil 61 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEI-----GYI----LSRSIDRARNLAEVYGG----------KAATLEKHPELNGVVFV 61 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----C-----CCE----ECSSHHHHHHHHHHTCC----------CCCSSCCCCC---CEEE
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCE-----EEE----EeCChhhhcchhhcccc----------cccchhhhhccCcEEEE
Confidence 68999 599999999877543321 122 37888887766544321 12356788999999999
Q ss_pred eC
Q 015897 179 IG 180 (398)
Q Consensus 179 ta 180 (398)
+.
T Consensus 62 ~v 63 (153)
T d2i76a2 62 IV 63 (153)
T ss_dssp CS
T ss_pred ec
Confidence 85
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.91 E-value=0.0063 Score=54.68 Aligned_cols=117 Identities=15% Similarity=0.016 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCcccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (398)
+++.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++......+..+++-. ..-.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGA-----KVAF----SDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999885 3554 47888888888887754321111111100 012355
Q ss_pred cCCCcEEEEeCCCCCC-C--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 170 FEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 170 l~dADiViitag~~rk-~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
+..-|++|..+|.... + ..+.. ..+..| .-+.+...+.|++ .++.||+++-..
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~---~~G~Iv~isS~~ 140 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE---TGGSIINMASVS 140 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---TCEEEEEECCGG
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCCceecccchh
Confidence 6788999999886532 2 12222 234444 3456777777754 358888887544
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.01 Score=52.52 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-+++.|+||++.||..++..|+..|. .|.+ .|++++.++....++..+ .+...+ ....+.+..-|+
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~--Dv~~~~---~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGA-----EVTI----CARNEELLKRSGHRYVVC--DLRKDL---DLLFEKVKEVDI 69 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHTCSEEEEC--CTTTCH---HHHHHHSCCCSE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHhcCCcEEEc--chHHHH---HHHHHHhCCCcE
Confidence 36899999999999999999999885 3554 377776655321111000 000000 113467788999
Q ss_pred EEEeCCCCCC-CC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKPRG-PG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~rk-~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+|..+|.+.. +- ++.. ..+..| ..+.+.+.+.+++. ..+.+|+++.-
T Consensus 70 lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--~~G~ii~i~S~ 126 (234)
T d1o5ia_ 70 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSF 126 (234)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred EEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc--ccccccccccc
Confidence 9999887642 21 2222 223444 33577777788774 56777777643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.0044 Score=49.67 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=42.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (398)
+|+.|+|+ |.+|..++..|...|. ++.+ +|.++++++. +.+.. ..+.++. + ....+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~-----~vvv----id~d~~~~~~----~~~~~----~~~~~gd~~~~~~l~~a~i 62 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH-----EVLA----VDINEEKVNA----YASYA----THAVIANATEENELLSLGI 62 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-----CCEE----EESCHHHHHH----TTTTC----SEEEECCTTCTTHHHHHTG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----ecCcHHHHHH----HHHhC----CcceeeecccchhhhccCC
Confidence 37899995 9999999999999876 3544 4777777653 22211 1222221 1 12347
Q ss_pred CCCcEEEEeCC
Q 015897 171 EDAEWALLIGA 181 (398)
Q Consensus 171 ~dADiViitag 181 (398)
.+||.||++.+
T Consensus 63 ~~a~~vi~~~~ 73 (134)
T d2hmva1 63 RNFEYVIVAIG 73 (134)
T ss_dssp GGCSEEEECCC
T ss_pred ccccEEEEEcC
Confidence 88998887643
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.82 E-value=0.05 Score=48.65 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--------- 164 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--------- 164 (398)
+-+++.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++........ ....++.
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT----CARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQ 77 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHH
Confidence 346888999999999999999999885 2544 47888888888888765331100 0011110
Q ss_pred CcccccC-CCcEEEEeCCCCC-CC--CCchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 165 NPYELFE-DAEWALLIGAKPR-GP--GMERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 165 ~~~eal~-dADiViitag~~r-k~--g~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.-.+.+. .-|++|..+|... .+ .++..+ .+..| .-+.+...+.+++. ..+.||+++--
T Consensus 78 ~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS~ 146 (259)
T d1xq1a_ 78 TVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSSI 146 (259)
T ss_dssp HHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC--
T ss_pred HHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc--ccccccccccc
Confidence 0123333 4799999888643 22 223222 34444 34567777777774 46777777643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.82 E-value=0.016 Score=52.21 Aligned_cols=116 Identities=8% Similarity=0.039 Sum_probs=72.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------Cc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------NP 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~~ 166 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++.... ... ....++. .-
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGA-----KVVI----ADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHH
Confidence 5788889999999999999999885 3554 4788889988888876422 100 0011111 11
Q ss_pred ccccCCCcEEEEeCCCC-CCC----CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 167 YELFEDAEWALLIGAKP-RGP----GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 167 ~eal~dADiViitag~~-rk~----g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.+..-|++|..+|.. ..+ .++.. ..+..| .-+.+...+.+.+. .++.+|+++.-
T Consensus 77 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~ii~iss~ 144 (268)
T d2bgka1 77 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASI 144 (268)
T ss_dssp HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCG
T ss_pred HHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc--CCCCccccccc
Confidence 24456789999988754 222 12222 234444 34566777777774 56777777644
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.80 E-value=0.06 Score=48.06 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc-eEEEecC--------
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR-EVKIGIN-------- 165 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~-~v~i~~~-------- 165 (398)
+-+++.|+||++.+|..++..|+..|. .|.+ .++++++++..+.++.+....... ...++..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-----~V~i----~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-----RVYT----CSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHH
Confidence 346899999999999999999999986 3554 478888888777777654311100 0111100
Q ss_pred -ccccc-CCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 166 -PYELF-EDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 166 -~~eal-~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
-.+.+ ..-|++|..+|... .+- .+.. ..+..| ....+.+.+.+.+. ..+.+|+++-...
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--~~g~ii~isS~~~ 146 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIAG 146 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGGG
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc--ccccccccccccc
Confidence 11233 24788888877653 221 2222 223333 34566677777774 6788888775544
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=95.80 E-value=0.0042 Score=57.34 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cCcc----ccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPY----ELF 170 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~----eal 170 (398)
.+||.|+||+|+||++++..|+..|. .|.. .|++............ .. +.. +.... ..++ +++
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~-----~V~~----~~r~~~~~~~~~~~~~-~~-~~i-~~~~~Dl~d~~~l~~~~ 75 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKG----YSLTAPTVPSLFETAR-VA-DGM-QSEIGDIRDQNKLLESI 75 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCSSSSCHHHHTT-TT-TTS-EEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCCCccHHHHhhhh-cc-cCC-eEEEeeccChHhhhhhh
Confidence 47999999999999999999999885 2432 2444332221211111 01 110 11111 1122 333
Q ss_pred C--CCcEEEEeCCCCCCC-C-CchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 E--DAEWALLIGAKPRGP-G-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 ~--dADiViitag~~rk~-g-~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+ +.|+|+..++.+... . ..-......|+.-...+.+.+.+. +....++..+
T Consensus 76 ~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~-~~~~~~~~~s 130 (356)
T d1rkxa_ 76 REFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNIT 130 (356)
T ss_dssp HHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEEC
T ss_pred hhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhcc-cccccccccc
Confidence 3 447888877643211 0 122345677888888888888886 3444444433
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.011 Score=54.64 Aligned_cols=113 Identities=11% Similarity=0.028 Sum_probs=62.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH--HHHHHHhhhcCCCcceEEEecCccc----ccC
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE--GVAMELEDSLFPLLREVKIGINPYE----LFE 171 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~--g~a~DL~d~~~~~~~~v~i~~~~~e----al~ 171 (398)
.|.|+||+|+||++++..|+..+. .|.. +|. ....... .....+.+.. ..-+..-..+.+ .++
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll~~g~-----~V~~--~d~-~~~~~~~~~~~~~~~~~~~---v~~~~~Dl~d~~~l~~~~~ 71 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELIENGY-----DCVV--ADN-LSNSTYDSVARLEVLTKHH---IPFYEVDLCDRKGLEKVFK 71 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EEC-CSSCCTHHHHHHHHHHTSC---CCEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----eEEE--EEC-CCCcchhHHHhHHhhcccC---CeEEEeecCCHHHHHHHHh
Confidence 488999999999999999999874 2432 221 1111111 1111111111 011111011222 223
Q ss_pred --CCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 172 --DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 172 --dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+.|+||.+|+....+ ..........|......+.+...+. ....++..-|
T Consensus 72 ~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS 125 (347)
T d1z45a2 72 EYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSS 125 (347)
T ss_dssp HSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEE
T ss_pred ccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecc
Confidence 689999998765311 2234556778888888998888886 4444444333
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.76 E-value=0.011 Score=52.73 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-------ecCcc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPY 167 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-------~~~~~ 167 (398)
+-+++.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++...... .+++- ...-.
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~l~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~ 72 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-----RLVA----CDIEEGPLREAAEAVGAHPVV--MDVADPASVERGFAEAL 72 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTTCEEEE--CCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCeEEE--EecCCHHHHHHHHHHHH
Confidence 346888999999999999999999885 3544 478888887666554321111 11100 00123
Q ss_pred cccCCCcEEEEeCCCCCC-C--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 168 ELFEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 168 eal~dADiViitag~~rk-~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
+.+..-|++|..+|..+. + ..+.. ..+..| .-+.+...+.+.+. ..+.+++.+-
T Consensus 73 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~~~i~~~ss 136 (242)
T d1ulsa_ 73 AHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTAS 136 (242)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECC
T ss_pred HhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc--ccceeeeecc
Confidence 455678999999887532 2 12222 234444 34566777777763 5666666653
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.064 Score=47.60 Aligned_cols=115 Identities=15% Similarity=0.039 Sum_probs=72.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC--c-------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------- 166 (398)
+.+.|+||++.+|.+++..|+..|. .|.+ .|++.++++..+.++.+.. + ..++. +..| +
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA-----KVAL----VDWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-C-CCcEEEEEeecCCHHHHHHH
Confidence 5677889999999999999999885 3554 4788888888888776532 1 11111 1111 1
Q ss_pred ----ccccCCCcEEEEeCCCCCCCCCchhhhHHHH----HHHHHHHHHHHHHhc-CCCeEEEEECCC
Q 015897 167 ----YELFEDAEWALLIGAKPRGPGMERAGLLDIN----GQIFAEQGKALNAVA-SRNVKVIVVGNP 224 (398)
Q Consensus 167 ----~eal~dADiViitag~~rk~g~~r~dll~~N----~~i~~~i~~~i~~~a-~p~a~vIvvtNP 224 (398)
.+.+..-|++|..+|...... -.+.+..| ....+...+.+.+.. ...+.||+++-.
T Consensus 73 ~~~~~~~~G~iDilVnnAg~~~~~~--~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~ 137 (254)
T d2gdza1 73 FRKVVDHFGRLDILVNNAGVNNEKN--WEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 137 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSSS--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred HHHHHHHcCCcCeeccccccccccc--chheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence 234567899999988753222 22233334 345666666665541 235778888744
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.65 E-value=0.04 Score=49.24 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=69.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC----------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~---------- 165 (398)
+.+.|+||++.||..++..|+..|. .|.+ .|+++++++..+.+|...... ..++. +..|
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvt~~~~v~~~ 75 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGA-----KVTI----TGRHAERLEETRQQILAAGVS-EQNVNSVVADVTTDAGQDEI 75 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-cCceEEEEccCCCHHHHHHH
Confidence 3566779999999999999999885 3554 478889999888888764311 11121 1111
Q ss_pred ---cccccCCCcEEEEeCCCCC-----CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 166 ---PYELFEDAEWALLIGAKPR-----GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 166 ---~~eal~dADiViitag~~r-----k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
..+.+..-|++|..+|... .+. ++.. ..+..| ..+.+...+.+++. .+++|++.+
T Consensus 76 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (264)
T d1spxa_ 76 LSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNISS 147 (264)
T ss_dssp HHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cCcceeeee
Confidence 2244567899999887532 111 1222 224444 34567777777764 566666655
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.014 Score=53.60 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=55.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc--------ccchhhHHHHHHHHhhhcCCCcceEEEecCc---
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--------ERSLQALEGVAMELEDSLFPLLREVKIGINP--- 166 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~--------D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~--- 166 (398)
||.|+||+|+||++++..|+..|. +|.. +|. ....+.++ ....+.. ....-+..-..+
T Consensus 4 KILITG~tGfIGs~lv~~Ll~~g~-----~V~~--ld~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~Dl~d~~~ 72 (346)
T d1ek6a_ 4 KVLVTGGAGYIGSHTVLELLEAGY-----LPVV--IDNFHNAFRGGGSLPESLR-RVQELTG---RSVEFEEMDILDQGA 72 (346)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----CEEE--EECSSSSCBCSSSSBHHHH-HHHHHHT---CCCEEEECCTTCHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHCcC-----EEEE--EECCCccccccccchHHHH-HHHHhcC---CCcEEEEeecccccc
Confidence 899999999999999999998875 2332 110 00012222 1112211 111111110012
Q ss_pred -ccccCCCc--EEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 167 -YELFEDAE--WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 167 -~eal~dAD--iViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
.+.+.+.| +|+.+|+.+... .....+....|+.-...+...+.++
T Consensus 73 l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~ 122 (346)
T d1ek6a_ 73 LQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122 (346)
T ss_dssp HHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc
Confidence 23344455 455567654211 1134566788888888888888876
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.55 E-value=0.0038 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|+||+|+||+|.+|.-++..|.....
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~ 26 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE 26 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC
Confidence 78999999999999999998887654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.54 E-value=0.016 Score=51.49 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=86.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-------cCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (398)
-+++.|+||++.+|..++..|+..|. .|.+ .++++++++....++......+..+++-. ..-.+
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGA-----SLVA----VDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 35788889999999999999999986 3554 37888888767666543211110111000 01234
Q ss_pred ccCCCcEEEEeCCCC-CCC--CCch---hhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCc
Q 015897 169 LFEDAEWALLIGAKP-RGP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242 (398)
Q Consensus 169 al~dADiViitag~~-rk~--g~~r---~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~k 242 (398)
.+..-|++|..+|.. +.+ ..+. .+.+..|..-...+.+....+......+++.+.-...-..-..-|.
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~~~Y~------ 149 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYA------ 149 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHHHHHH------
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCccccc------
Confidence 557799999987754 333 1222 2346677776666677666664455666666654322111111111
Q ss_pred eEEecCchhHHHHHHHHHHHcCc
Q 015897 243 NFHALTRLDENRAKCQLALKAGV 265 (398)
Q Consensus 243 vig~gt~lDs~Rl~~~lA~~lgv 265 (398)
.+----..+-+.+|+.++-
T Consensus 150 ----~sK~al~~lt~~lA~el~~ 168 (241)
T d2a4ka1 150 ----AGKLGVVGLARTLALELAR 168 (241)
T ss_dssp ----HCSSHHHHHHHHHHHHHTT
T ss_pred ----hhhHHHHHHHHHHHHHHhH
Confidence 0111134677778888773
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.52 E-value=0.017 Score=52.36 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-------ecCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-------~~~~~e 168 (398)
-+++.|+||++.||.+++..|+..|. .|.+ .|+++++++....++......+..+++- .....+
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGA-----KVAV----LDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHH
Confidence 45788999999999999999999985 3554 4788888887777665432111111110 011235
Q ss_pred ccCCCcEEEEeCCCCCCC-------CCc-h---hhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 169 LFEDAEWALLIGAKPRGP-------GME-R---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 169 al~dADiViitag~~rk~-------g~~-r---~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+..-|++|..+|..... ... . ...+..| ..+.+...+.+.+. .+.+|++.|
T Consensus 76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S 142 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTIS 142 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeee
Confidence 567889999988753211 111 1 1223344 44577777888764 455555554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.026 Score=47.28 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+.++|.|+|| |.++.++++.|...+. .|.+ .+++.++++..+..+.+.. .+.....+.....++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~-----~i~I----~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (170)
T d1nyta1 17 PGLRILLIGA-GGASRGVLLPLLSLDC-----AVTI----TNRTVSRAEELAKLFAHTG-----SIQALSMDELEGHEFD 81 (170)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHTGGGS-----SEEECCSGGGTTCCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHhcccce-----EEEe----ccchHHHHHHHHHHHhhcc-----cccccccccccccccc
Confidence 3569999995 9999999999998764 2443 3788888887776655432 2333333444557899
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+||.+-
T Consensus 82 liIN~T 87 (170)
T d1nyta1 82 LIINAT 87 (170)
T ss_dssp EEEECC
T ss_pred eeeccc
Confidence 999863
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=95.43 E-value=0.032 Score=50.05 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=71.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcCCCcceEE-EecC---------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (398)
+.+.|+||++.||.+++..|+..|. .|++ .+++ ++.++..+.+++... . ++. +..|
T Consensus 8 K~alITGas~GIG~aia~~la~~G~-----~Vv~----~~r~~~~~~~~~~~~~~~~g-~---~~~~~~~Dvt~~~~v~~ 74 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKA-----KVVV----NYRSKEDEANSVLEEIKKVG-G---EAIAVKGDVTVESDVIN 74 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT-C---EEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCcHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHH
Confidence 5777889999999999999999885 3554 2444 456776777766432 1 111 1111
Q ss_pred ----cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 ----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ----~~eal~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+..-|++|..+|... .+- .+.. ..+..| .-+.+...+.+.+. ..++.|++++-.
T Consensus 75 ~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~~Iv~isS~ 146 (261)
T d1geea_ 75 LVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSSV 146 (261)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECCG
T ss_pred HHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccc-cccccccccccc
Confidence 1234567899999988753 221 2222 234445 44577778888775 456667777644
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.39 E-value=0.1 Score=46.81 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=69.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-----------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----------- 165 (398)
+++.|+||+|.||.+++..|+..|. .|.+ .|++.++++..+.+|.... +.. ...+..|
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga-----~Vii----~~r~~~~l~~~~~~l~~~~-g~~-~~~~~~D~~~~~~v~~~~ 94 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA-----QCVI----ASRKMDVLKATAEQISSQT-GNK-VHAIQCDVRDPDMVQNTV 94 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-SSC-EEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHHhc-CCc-eEEEEecccChHHHHHHh
Confidence 5788889999999999999999885 3554 4788888888888776432 111 0111111
Q ss_pred --cccccCCCcEEEEeCCCCCCCCC---c---hhhhHHHHHH----HHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 166 --PYELFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 166 --~~eal~dADiViitag~~rk~g~---~---r~dll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
..+.+...|++|..+|....... + -.+.+..|.. .....+..+... ...+.+++.+...
T Consensus 95 ~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~i~~~ss~~ 165 (294)
T d1w6ua_ 95 SELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA-QKGAAFLSITTIY 165 (294)
T ss_dssp HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECCTH
T ss_pred hhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccc-cccccccccccch
Confidence 22445678999998876532211 1 1222333322 234444444543 4566666666543
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0075 Score=53.74 Aligned_cols=100 Identities=21% Similarity=0.127 Sum_probs=56.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-Ee-----cCcccccCC
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG-----INPYELFED 172 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~-----~~~~eal~d 172 (398)
|.|+||+|+||++++..|+..|.. +|.. +| +.+..... ..+.+.. . .+.. .. ......+.+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~----~V~~--~d-~~~~~~~~---~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT----DILV--VD-NLKDGTKF---VNLVDLN--I-ADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC----CEEE--EE-CCSSGGGG---HHHHTSC--C-SEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCC----eEEE--EE-CCCCcchh---hcccccc--h-hhhccchHHHHHHhhhhcccc
Confidence 789999999999999999998752 2322 22 11111100 0111111 0 0110 00 113456788
Q ss_pred CcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHh
Q 015897 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (398)
Q Consensus 173 ADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~ 211 (398)
.++|+..++....+..........|......+.....+.
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER 107 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccc
Confidence 899888887665555555555666666666666666654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.043 Score=49.11 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC----------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---------- 165 (398)
-+++.|+||++.+|.++|..|+..|. .|.+ .++++++++..+.++..........+..-..
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~-----~Vil----~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHH
Confidence 46899999999999999999999885 2544 4788899988877765443111001110011
Q ss_pred -cccccCCCcEEEEeCCCC-CCCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 -PYELFEDAEWALLIGAKP-RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 -~~eal~dADiViitag~~-rk~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
..+.+...|+++..+|.. ..+- .+.. ..+..| ..+.+.+.+.+++. +|.+|+++--
T Consensus 85 ~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS~ 151 (269)
T d1xu9a_ 85 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSL 151 (269)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEG
T ss_pred HHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEeccc
Confidence 123345678888877653 2221 1221 234444 34566666677652 4666666533
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.31 E-value=0.11 Score=45.68 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=74.7
Q ss_pred E-EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc--eEEEec---------C
Q 015897 98 N-IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIGI---------N 165 (398)
Q Consensus 98 K-I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~--~v~i~~---------~ 165 (398)
+ |.|+||++.||.+++..|+..|.---.....+.+ .+++++.++..+.+++... .... ...++. .
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~--~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dvt~~~~v~~~~~~ 78 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL--SSRTAADLEKISLECRAEG-ALTDTITADISDMADVRRLTTH 78 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE--EESCHHHHHHHHHHHHTTT-CEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEE--EeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHH
Confidence 5 4577999999999999999887521000112222 4788888988888887532 1100 011110 1
Q ss_pred cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 166 PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 166 ~~eal~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
-.+.+..-|++|..+|... .+- .+.. ..+..| .-+.+...+.|++. .+|.+|+++.-.
T Consensus 79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 146 (240)
T d2bd0a1 79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVA 146 (240)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc--CCCceEEEechh
Confidence 2355668999999888653 221 1211 234444 44678888888874 578888887543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.26 E-value=0.058 Score=44.46 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=42.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
-||+|+||+|.+|..+...|...+. . .+.+.++....+ .| ..+.+ ............+++.++|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p---~~~l~~~~s~~s----~G--~~~~~----~~~~~~~~~~~~~~~~~~d~~ 67 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARS----AG--KSLKF----KDQDITIEETTETAFEGVDIA 67 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-C---EEEEEEEECGGG----TT--CEEEE----TTEEEEEEECCTTTTTTCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-C---ceEEEEeccccc----cc--ccccc----cCCcccccccchhhhhhhhhh
Confidence 3899999999999999998877642 1 133433322211 11 11111 112233334567788999999
Q ss_pred EEeCC
Q 015897 177 LLIGA 181 (398)
Q Consensus 177 iitag 181 (398)
+++.+
T Consensus 68 f~~~~ 72 (154)
T d2gz1a1 68 LFSAG 72 (154)
T ss_dssp EECSC
T ss_pred hhccC
Confidence 99865
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.092 Score=47.84 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCC-CcceEE-EecC--------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVK-IGIN-------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~-~~~~v~-i~~~-------- 165 (398)
-+++.|+||++.||.+++..|+..|. .|++ .|+++++++..+.+|...... ...++. +..|
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga-----~Vvi----~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence 35788999999999999999999885 3554 478889999888888753211 111222 1111
Q ss_pred -----cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 -----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 -----~~eal~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+..-|++|..+|... .+- .+.. ..+..| .-+.+...+.+.+. ..+.||+++..
T Consensus 83 ~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~Ii~~ss~ 154 (297)
T d1yxma1 83 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE--HGGSIVNIIVP 154 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECCC
T ss_pred HHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc--ccccccccccc
Confidence 1234567899999887653 221 1222 234555 34566777777775 46666666643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.19 E-value=0.031 Score=49.82 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=68.1
Q ss_pred EE-EEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------Cc
Q 015897 98 NI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------NP 166 (398)
Q Consensus 98 KI-~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~~ 166 (398)
|| .|+||++.||.+++..|+..|. .|.+ .|++++.++..+.+|.+...... ....++. ..
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-----RVFV----CARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 45 5779999999999999999985 3554 37888999988888875421100 0011110 12
Q ss_pred ccccCCCcEEEEeCCCCCC-C--CCchh---hhHHHHHHH----HHHHHHH--HHHhcCCCeEEEEECC
Q 015897 167 YELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQI----FAEQGKA--LNAVASRNVKVIVVGN 223 (398)
Q Consensus 167 ~eal~dADiViitag~~rk-~--g~~r~---dll~~N~~i----~~~i~~~--i~~~a~p~a~vIvvtN 223 (398)
.+.+..-|++|..+|.... + ..+.. +.+..|+.- .+.+.+. +.+ ...+.||+++-
T Consensus 74 ~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~--~~~g~Ii~i~S 140 (257)
T d2rhca1 74 VERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLE--RGTGRIVNIAS 140 (257)
T ss_dssp HHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHH--HTEEEEEEECC
T ss_pred HHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHh--cCCcccccccc
Confidence 3456689999999887532 2 11222 335555443 3344432 223 24567777654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.12 E-value=0.024 Score=47.68 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..+|.|+|| |.++.++++.|..++ . .|.+ .+++.++++..+..+.... ++.....+...+.++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~aL~~~~--~---~i~I----~nR~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (171)
T d1p77a1 17 PNQHVLILGA-GGATKGVLLPLLQAQ--Q---NIVL----ANRTFSKTKELAERFQPYG-----NIQAVSMDSIPLQTYD 81 (171)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT--C---EEEE----EESSHHHHHHHHHHHGGGS-----CEEEEEGGGCCCSCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccC--c---eeee----ccchHHHHHHHHHHHhhcc-----ccchhhhccccccccc
Confidence 4569999995 999999999998743 2 2544 4788888888888776322 2333333455678999
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||.+..
T Consensus 82 iiIN~tp 88 (171)
T d1p77a1 82 LVINATS 88 (171)
T ss_dssp EEEECCC
T ss_pred eeeeccc
Confidence 9999843
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=95.11 E-value=0.056 Score=48.16 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=70.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-hhhHHHHHHHHhhhcC-CCc-ceEEEec---------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLF-PLL-REVKIGI--------- 164 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-~~~l~g~a~DL~d~~~-~~~-~~v~i~~--------- 164 (398)
+.+.|+||++.||.+++..|+..|. .|.+ .+++ .+.++....++....- ... ....++.
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 75 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGA-----DIVL----NGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVD 75 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----ECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 4677889999999999999999885 3554 2554 4566666666543220 000 0011111
Q ss_pred CcccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 165 NPYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 165 ~~~eal~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
...+.+..-|++|..+|... .+- .+.. +.+..| ....+...+.+.+. ..|.||+++-..
T Consensus 76 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS~~ 144 (260)
T d1x1ta1 76 NAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASAH 144 (260)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc--CCceEeeccccc
Confidence 12344567899999988753 221 1222 234444 44677788888875 568888877543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.08 E-value=0.091 Score=46.67 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (398)
-+++.|+||++.||.+++..|+..|. .|.+ .|++++.++..+.++.... +. ++. +..|
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~~~~~~-g~--~~~~~~~Dv~~~~~v~~ 76 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGA-----NVAV----IYRSAADAVEVTEKVGKEF-GV--KTKAYQCDVSNTDIVTK 76 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE-----EEEE----EESSCTTHHHHHHHHHHHH-TC--CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHHh-CC--ceEEEEccCCCHHHHHH
Confidence 46788889999999999999999886 3544 3677677776666664432 11 111 1111
Q ss_pred ----cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHH----HHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 166 ----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 166 ----~~eal~dADiViitag~~r-k~g--~~r~---dll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
-.+.+..-|++|..+|... ++- .+.. ..+..|+ .+.+.+.+.+.+. ...+.+++.+.
T Consensus 77 ~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~~g~i~~~~s 147 (260)
T d1h5qa_ 77 TIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQK-QQKGSIVVTSS 147 (260)
T ss_dssp HHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred HHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhccccccc-ccceEEEEeec
Confidence 2245668999999887652 221 2222 2344453 3566777777665 46677766554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.97 E-value=0.039 Score=46.57 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=50.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe--cCcccccC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFE 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~ 171 (398)
.++-||.|+|| |.+|..-+.....-|- .+.+ + |.+.++++.....+.... +.... ....+.++
T Consensus 30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA-----~V~~--~--D~~~~~l~~l~~~~~~~~-----~~~~~~~~~l~~~~~ 94 (168)
T d1pjca1 30 VKPGKVVILGG-GVVGTEAAKMAVGLGA-----QVQI--F--DINVERLSYLETLFGSRV-----ELLYSNSAEIETAVA 94 (168)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHGGGS-----EEEECCHHHHHHHHH
T ss_pred CCCcEEEEECC-ChHHHHHHHHHhhCCC-----EEEE--E--eCcHHHHHHHHHhhcccc-----eeehhhhhhHHHhhc
Confidence 45789999995 9999999888877664 2443 3 677777764443322111 11111 12468899
Q ss_pred CCcEEEEeCCCC
Q 015897 172 DAEWALLIGAKP 183 (398)
Q Consensus 172 dADiViitag~~ 183 (398)
+||+||-++-.|
T Consensus 95 ~aDivI~aalip 106 (168)
T d1pjca1 95 EADLLIGAVLVP 106 (168)
T ss_dssp TCSEEEECCCCT
T ss_pred cCcEEEEeeecC
Confidence 999999998776
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.93 E-value=0.017 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++||.|+||+|++|++++..|+..|.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~ 28 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGH 28 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999998874
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=94.90 E-value=0.1 Score=45.97 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC------------
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN------------ 165 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~------------ 165 (398)
|.|+||++.+|..++..|+..|. .|.+. + .++++.++....+++... . ++. +..|
T Consensus 4 ~lITGas~GIG~a~a~~la~~Ga-----~V~i~--~-~~~~~~~~~~~~~~~~~g-~---~~~~~~~Dv~~~~~v~~~~~ 71 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAGC-----KVLVN--Y-ARSAKAAEEVSKQIEAYG-G---QAITFGGDVSKEADVEAMMK 71 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-----EEEEE--E-SSCHHHHHHHHHHHHHHT-C---EEEEEECCTTSHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCC-----EEEEE--e-CCCHHHHHHHHHHHHHcC-C---cEEEEeCCCCCHHHHHHHHH
Confidence 56779999999999999999885 35442 1 345667776766665432 1 111 1111
Q ss_pred -cccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 -PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 -~~eal~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.+.+..-|++|..+|... .+- ++.. ..++.| .-..+...+.|.+. .+|.||+++--
T Consensus 72 ~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~ 139 (244)
T d1edoa_ 72 TAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASV 139 (244)
T ss_dssp HHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc--CCcEEEEEcCh
Confidence 2344568899999887653 221 1221 234444 44677778888774 57888888754
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.85 E-value=0.021 Score=51.67 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-C--ccccc---
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PYELF--- 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~eal--- 170 (398)
+||.|+||+|+||++++..|+..|. +|.- +|........ ....++. ...++.+.. | +.+.+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-----~V~~--~~r~~~~~~~-~~l~~~~-----~~~~~~~~~~Dl~d~~~~~~~ 67 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-----RVHG--LVARRSSDTR-WRLRELG-----IEGDIQYEDGDMADACSVQRA 67 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCCSSCCC-HHHHHTT-----CGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EECCCCcccH-HHHHHhc-----ccCCcEEEEccccChHHhhhh
Confidence 4899999999999999999998875 2321 1111111111 1111111 111222221 1 22222
Q ss_pred ---CCCcEEEEeCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 171 ---EDAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 171 ---~dADiViitag~~rk--~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.+.++++.++..... ...........|+.-...+.+.+.+. +...+++..|
T Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~-~~~~~~i~~S 123 (321)
T d1rpna_ 68 VIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAS 123 (321)
T ss_dssp HHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred hccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHh-CCCccccccc
Confidence 135566666544321 11234566788888888888888887 5666666554
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.76 E-value=0.046 Score=49.96 Aligned_cols=173 Identities=13% Similarity=0.019 Sum_probs=88.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc--ccchhhHHHHHHHHhhhcCCCcceEEEec-C-----
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGI-N----- 165 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~--D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~----- 165 (398)
.+++||.|+||+|++|++++..|...|. +|.. +|. ..+.+.+... ..+.... ...++.+.. |
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~-----~V~~--~d~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~d~~d~~ 83 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVG--LDNFATGHQRNLDEV-RSLVSEK--QWSNFKFIQGDIRNLD 83 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCHHHHHHH-HHHSCHH--HHTTEEEEECCTTSHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-----EEEE--EECCCCcchhhHHHH-HHhhhhc--ccCCeeEEeecccccc
Confidence 3456999999999999999999999875 2322 111 1112222211 1111100 001222211 1
Q ss_pred -cccccCCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH----HHHHHCCC
Q 015897 166 -PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAPS 238 (398)
Q Consensus 166 -~~eal~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~----~~~k~~~~ 238 (398)
......+.|.|+..+....-+ ..+.......|+.-...+.+.+.+. +...+|..-|.-+ ... -.-+.++.
T Consensus 84 ~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~v--yg~~~~~~~~E~~~~ 160 (341)
T d1sb8a_ 84 DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSST--YGDHPGLPKVEDTIG 160 (341)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGG--GTTCCCSSBCTTCCC
T ss_pred ccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEccccee--eCCCCCCCccCCCCC
Confidence 234567788888876543211 2234567788999999999999885 4444444433211 000 00001111
Q ss_pred CCCceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccC
Q 015897 239 IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280 (398)
Q Consensus 239 ~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg 280 (398)
. +...=+-+-+..-++-..+++..+++..-++...|.|.++
T Consensus 161 ~-p~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~ 201 (341)
T d1sb8a_ 161 K-PLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 201 (341)
T ss_dssp C-CCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred C-CCCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence 1 1111011222334455556677778777777545788653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.74 E-value=0.093 Score=47.97 Aligned_cols=118 Identities=10% Similarity=0.066 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc-------cchhhHHHHHHHHhhhcCCCcceEEEec----
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-------RSLQALEGVAMELEDSLFPLLREVKIGI---- 164 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D-------~~~~~l~g~a~DL~d~~~~~~~~v~i~~---- 164 (398)
-+.+.|+||++.||..++..|+..|. .|++ .|++ ++++.++..+.++....... ...+..
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga-----~Vvi--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~ 77 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGA-----LVVV--NDLGGDFKGVGKGSSAADKVVEEIRRRGGKA--VANYDSVEAG 77 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--ECCCBCTTSCBCCSHHHHHHHHHHHHTTCEE--EEECCCGGGH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE--EeCCchhhhhhhhHHHHHHHHHHHhhccccc--ccccchHHHH
Confidence 45677889999999999999999985 2544 3332 23455666666665432111 111111
Q ss_pred -----CcccccCCCcEEEEeCCCCCC-C--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 165 -----NPYELFEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 165 -----~~~eal~dADiViitag~~rk-~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.-.+.+..-|++|..+|..+. + .++.. ..+..| ..+.+...+.|.+. ..|.||+++-.
T Consensus 78 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IV~isS~ 150 (302)
T d1gz6a_ 78 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTASA 150 (302)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC--CCcEEEEeCCh
Confidence 122456689999999887542 2 11222 234444 44678888888875 47888888743
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.72 E-value=0.052 Score=45.26 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
+..||.|+|| |.++.++++.|...+. . .|.+ .+++.++++..+..+... .+ + .....++|
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~---~I~I----~nR~~~ka~~L~~~~~~~--------~~--~-~~~~~~~D 75 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-E---KLKI----YARNVKTGQYLAALYGYA--------YI--N-SLENQQAD 75 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTC-C---CEEE----ECSCHHHHHHHHHHHTCE--------EE--S-CCTTCCCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC-C---EEEE----ecccHHHHHHHHHhhhhh--------hh--h-cccccchh
Confidence 3568999995 9999999999998875 2 2554 378888877666544321 11 1 12235789
Q ss_pred EEEEeCC
Q 015897 175 WALLIGA 181 (398)
Q Consensus 175 iViitag 181 (398)
+||.+-.
T Consensus 76 liINaTp 82 (167)
T d1npya1 76 ILVNVTS 82 (167)
T ss_dssp EEEECSS
T ss_pred hheeccc
Confidence 9998643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.015 Score=51.76 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=67.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE---ecCcccccCCC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELFEDA 173 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i---~~~~~eal~dA 173 (398)
+++.|+||++.+|.+++..|+..|. .|++ .|+++++++.....+.... ...++.. .....+.+..-
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vi~----~~r~~~~l~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~i 75 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGA-----KVIA----TDINESKLQELEKYPGIQT--RVLDVTKKKQIDQFANEVERL 75 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHGGGGGSTTEEE--EECCTTCHHHHHHHHHHCSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHhccCCce--eeeeccccccccccccccccc
Confidence 4677889999999999999999885 3554 3677776653322111000 0000000 00123455688
Q ss_pred cEEEEeCCCCCC-CC--Cchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 174 EWALLIGAKPRG-PG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 174 DiViitag~~rk-~g--~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
|++|..+|.... +- ++..+ .+..| ..+.+.+.+.+.+. +++.+|+++-..
T Consensus 76 d~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--~~g~Ii~isS~~ 135 (245)
T d2ag5a1 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSVA 135 (245)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCSB
T ss_pred eeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC--CCceeeeeechh
Confidence 999998887532 21 22222 23333 44566777777774 677788887543
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.56 E-value=0.099 Score=41.16 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=31.5
Q ss_pred eeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 77 VFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
||++...-+.+...+..++..+|+|||| |.+|..+|..|...+.
T Consensus 11 v~~lrtl~Da~~l~~~~~~~~~vvIIGg-G~iG~E~A~~l~~~g~ 54 (121)
T d1d7ya2 11 VHTLRTLEDARRIQAGLRPQSRLLIVGG-GVIGLELAATARTAGV 54 (121)
T ss_dssp EEECCSHHHHHHHHHHCCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhhhcCCeEEEECc-chhHHHHHHHhhcccc
Confidence 7766432233333344556689999995 9999999999998875
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=94.50 E-value=0.037 Score=49.23 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEE-------ecCccc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYE 168 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i-------~~~~~e 168 (398)
-+++.|+||++.+|.+++..|+..|. .|.+ .|++++.++ .+.++....++. +++- .....+
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~-----~V~~----~~~~~~~~~-~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~ 72 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGA-----LVAL----CDLRPEGKE-VAEAIGGAFFQV--DLEDERERVRFVEEAAY 72 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSTTHHH-HHHHHTCEEEEC--CTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHcCCeEEEE--eCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999985 2544 356655543 333333211111 1100 011345
Q ss_pred ccCCCcEEEEeCCCCC-CCC--Cchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 169 LFEDAEWALLIGAKPR-GPG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 169 al~dADiViitag~~r-k~g--~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.+..-|++|..+|... .+- ++..+ .+..| ..+.+...+.|.+. ..+.||+++-..
T Consensus 73 ~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~Ii~isS~~ 137 (248)
T d2d1ya1 73 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASVQ 137 (248)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred hcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc--cccccccccccc
Confidence 5678999999888653 221 22222 34444 34677777788774 578888887543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.47 E-value=0.049 Score=45.69 Aligned_cols=76 Identities=25% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEecCcccccCCC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (398)
+-++|.|+|| |.++.++++.|...+ .|.+ ..++.++++..+.++........ ..+.. .+....+.++
T Consensus 17 ~~k~vlIlGa-GG~arai~~aL~~~~------~i~I----~nR~~~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (177)
T d1nvta1 17 KDKNIVIYGA-GGAARAVAFELAKDN------NIII----ANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGV 84 (177)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHTSSS------EEEE----ECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccc------ceee----ehhhhhHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchh
Confidence 4569999995 999999999885432 2544 37888999988888876542211 12333 3456677899
Q ss_pred cEEEEeCCC
Q 015897 174 EWALLIGAK 182 (398)
Q Consensus 174 DiViitag~ 182 (398)
|++|.+-..
T Consensus 85 dliIn~tp~ 93 (177)
T d1nvta1 85 DIIINATPI 93 (177)
T ss_dssp CEEEECSCT
T ss_pred hhhccCCcc
Confidence 999987543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.10 E-value=0.066 Score=47.38 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=65.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccch-hhHHHHHHHHhhhcCCCcceEEEec-------Cccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGI-------NPYE 168 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~-~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~e 168 (398)
+.+.|+||++.||..++..|+..|. .|.+ . |+++ +.++....++......+..+++-.. .-.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga-----~V~~--~--~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGA-----DIAI--A--DLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--ECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4778889999999999999999885 2544 3 4443 2233233222111100001110000 1224
Q ss_pred ccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 169 al~dADiViitag~~r-k~g--~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+..-|++|..+|... .+- .+.. ..+..| .-+.+.+.+.+.+. ..|.||+++--
T Consensus 77 ~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Iv~isS~ 140 (247)
T d2ew8a1 77 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTST 140 (247)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc--CCCCccccccc
Confidence 4568999999888643 221 2222 234444 44677778888875 46888888743
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.34 Score=43.47 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=61.9
Q ss_pred CEEEEE-cCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc-chhhHHHHHHHHhhhcCCCcceEE-EecC--ccc---
Q 015897 97 VNIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVK-IGIN--PYE--- 168 (398)
Q Consensus 97 ~KI~Ii-GA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~-~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e--- 168 (398)
+||++| ||++.||.+++..|+..|-- .+.+.+-..|. ..++++..+.++... ..++. +..| +.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~----v~~v~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~ 73 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQ----SFKVYATLRDLKTQGRLWEAARALACP----PGSLETLQLDVRDSKSVA 73 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC----CEEEEEEESCGGGTHHHHHHHHHTTCC----TTSEEEEECCTTCHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCC----eEEEEEecCChhhhHHHHHHHHHHhcc----CCceEEEeccccchHhhh
Confidence 477765 99999999999999998741 12221111121 122333333333221 11221 1111 111
Q ss_pred ------ccCCCcEEEEeCCCCCCCC---Cch---hhhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 169 ------LFEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 169 ------al~dADiViitag~~rk~g---~~r---~dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.-..-|+++..+|...... .+. ...++.| ..+.+.+.+.|.+. ..|.||+++-
T Consensus 74 ~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~--~~G~Iv~isS 142 (285)
T d1jtva_ 74 AARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR--GSGRVLVTGS 142 (285)
T ss_dssp HHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred hhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHc--CCCceEEEec
Confidence 1146899999887653221 111 1234445 44677788888875 4677777763
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.022 Score=52.02 Aligned_cols=114 Identities=13% Similarity=0.030 Sum_probs=58.2
Q ss_pred CEE-EEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-----hhhHHHHHHHHhhhcCCCcceEEEecC---cc
Q 015897 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----LQALEGVAMELEDSLFPLLREVKIGIN---PY 167 (398)
Q Consensus 97 ~KI-~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-----~~~l~g~a~DL~d~~~~~~~~v~i~~~---~~ 167 (398)
+|| .|+||+|+||++++..|+..|. +|.- +|+. ..+++....+... ....++++... +.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-----~V~~----i~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~ 68 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY-----EVHG----IVRRSSSFNTGRIEHLYKNPQA---HIEGNMKLHYGDLTDS 68 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCCSSCCCTTTGGGC------------CEEEEECCTTCH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC-----EEEE----EECCCcccchhhHHHHhhchhh---hccCCcEEEEeecCCc
Confidence 489 6999999999999999999875 2321 2332 1222211111110 11112332211 11
Q ss_pred ----ccc--CCCcEEEEeCCCCCCC--CCchhhhHHHHHHHHHHHHHHHHHhcCC-CeEEEEEC
Q 015897 168 ----ELF--EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVG 222 (398)
Q Consensus 168 ----eal--~dADiViitag~~rk~--g~~r~dll~~N~~i~~~i~~~i~~~a~p-~a~vIvvt 222 (398)
+++ .+.|+|+..++..... .....+....|+.-...+...+++.... ..++|.+|
T Consensus 69 ~~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S 132 (347)
T d1t2aa_ 69 TCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 132 (347)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred hhhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence 222 2445677666543211 1234455677877777888888775222 24566554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.94 E-value=0.37 Score=42.63 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC----------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---------- 165 (398)
-+++.|+||++.||..++..|+..|. .|.+ .+. .+++.++..+.++....... ..+..|
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga-----~Vvi--~~~-~~~~~~~~~~~~~~~~g~~~---~~~~~D~~~~~~v~~~ 86 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGC-----KVIV--NYA-NSTESAEEVVAAIKKNGSDA---ACVKANVGVVEDIVRM 86 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--EES-SCHHHHHHHHHHHHHTTCCE---EEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE--EeC-CchHHHHHHHHHHHhhCCce---eeEeCCCCCHHHHHHH
Confidence 46889999999999999999999885 3544 222 23556666666665432110 011111
Q ss_pred ---cccccCCCcEEEEeCCCCCCCC---Cc---hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 166 ---PYELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 166 ---~~eal~dADiViitag~~rk~g---~~---r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
..+.+..-|++|..+|...... .+ -.+.+..|+.-.-.+.+.+..+-..++.+++++.-
T Consensus 87 ~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~ 154 (272)
T d1g0oa_ 87 FEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI 154 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred HHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence 2355667899999887653221 11 12345555544444444444443345666666543
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.12 Score=46.23 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=55.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcEE
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (398)
+||.|+||+|+||++++..|+..+. .++. ++ +.+ + .|+.+.. .+. ..-...+.|.|
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~------~vi~-~~-~~~-~------~~~~~~~-----~~~----~~~~~~~~d~v 58 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGD------VELV-LR-TRD-E------LNLLDSR-----AVH----DFFASERIDQV 58 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTT------EEEE-CC-CTT-T------CCTTCHH-----HHH----HHHHHHCCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcC------EEEE-ec-Cch-h------ccccCHH-----HHH----HHHhhcCCCEE
Confidence 4999999999999999999998774 2221 21 121 1 0111100 000 00001245778
Q ss_pred EEeCCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 177 LLIGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 177 iitag~~rk---~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
+..++.... ......+....|+.....+...+.+. +-. .+|.+|
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~-~~i~~S 105 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVN-KLLFLG 105 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEC
Confidence 877643211 01234456778998888888888875 222 355444
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.82 E-value=0.39 Score=36.76 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||.|+|+ |.+|..-+..|+..|- .+.+ ++.+..++ +. .+.+.. . -...-..-..+++.++++
T Consensus 12 ~k~vlVvG~-G~va~~ka~~ll~~ga-----~v~v--~~~~~~~~-~~----~~~~~~-~--i~~~~~~~~~~dl~~~~l 75 (113)
T d1pjqa1 12 DRDCLIVGG-GDVAERKARLLLEAGA-----RLTV--NALTFIPQ-FT----VWANEG-M--LTLVEGPFDETLLDSCWL 75 (113)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTB-----EEEE--EESSCCHH-HH----HHHTTT-S--CEEEESSCCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--EeccCChH-HH----HHHhcC-C--ceeeccCCCHHHhCCCcE
Confidence 469999995 9999999999998875 2443 33333322 11 122111 1 112222345678999999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+.+.+
T Consensus 76 v~~at~ 81 (113)
T d1pjqa1 76 AIAATD 81 (113)
T ss_dssp EEECCS
T ss_pred EeecCC
Confidence 998754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.77 E-value=0.26 Score=43.34 Aligned_cols=49 Identities=27% Similarity=0.210 Sum_probs=35.5
Q ss_pred EEEEE-cCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhh
Q 015897 98 NIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (398)
Q Consensus 98 KI~Ii-GA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~ 152 (398)
||+|| ||++.||..++..|+...--+. .|++ .++++++++..+.+|...
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~----~~r~~~~l~~~~~~l~~~ 56 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLV----SARSESMLRQLKEELGAQ 56 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEE----EESCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEE----EECCHHHHHHHHHHHHhh
Confidence 66666 9999999999999986321111 2444 478889999888888754
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.75 E-value=0.068 Score=45.42 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=45.8
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHhcCcCCCCCceEEEecccc---cchhhHHHHHHHHhhhcCCCcceEEEecCcccccC
Q 015897 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE---RSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiG-A~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D---~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
..||+++| +..+|..+++..+..-|. .+.+ ..-+ ..++ ....+.++.... ...++++.+..++++
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~-----~l~l--~~P~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~d~~eai~ 73 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGM-----DVRI--AAPKALWPHDE-FVAQCKKFAEES---GAKLTLTEDPKEAVK 73 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTC-----EEEE--ECCGGGSCCHH-HHHHHHHHHHHH---TCEEEEESCHHHHTT
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCC-----EEEE--EccHHHHhhhH-HHHHHHHHhhcc---CCeEEEEeChhhccc
Confidence 46999999 323688888888777653 2433 3211 1122 222333332222 236778889999999
Q ss_pred CCcEEEEeCCC
Q 015897 172 DAEWALLIGAK 182 (398)
Q Consensus 172 dADiViitag~ 182 (398)
++|+|...--.
T Consensus 74 ~aDvVyt~~w~ 84 (185)
T d1dxha2 74 GVDFVHTDVWV 84 (185)
T ss_dssp TCSEEEECCCS
T ss_pred cccEEEeehhh
Confidence 99998876443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.70 E-value=0.019 Score=51.06 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++.||.|+||+|++|++++..|+..|.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~ 28 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH 28 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999999874
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=93.63 E-value=0.069 Score=44.09 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-CC
Q 015897 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~-la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dA 173 (398)
.+||+|||+ |++|.. .+..+...+- +.+.+ .|.++++++..+.++.... .+++..+.++ +.
T Consensus 1 tirvgiiG~-G~~~~~~~~~~l~~~~~------~~~~~--~d~~~~~~~~~~~~~~~~~--------~~~~~~~ll~~~i 63 (167)
T d1xeaa1 1 SLKIAMIGL-GDIAQKAYLPVLAQWPD------IELVL--CTRNPKVLGTLATRYRVSA--------TCTDYRDVLQYGV 63 (167)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTT------EEEEE--ECSCHHHHHHHHHHTTCCC--------CCSSTTGGGGGCC
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHhCCC------cEEEE--EECCHHHHHHHHHhccccc--------ccccHHHhccccc
Confidence 369999995 999976 4555544332 33333 3677777776666543211 2233333333 67
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|+++.
T Consensus 64 D~V~I~t 70 (167)
T d1xeaa1 64 DAVMIHA 70 (167)
T ss_dssp SEEEECS
T ss_pred ceecccc
Confidence 9988874
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=93.61 E-value=0.078 Score=49.62 Aligned_cols=75 Identities=9% Similarity=0.060 Sum_probs=52.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
+....++||| +|..+..-+..+..---+. .|.+ + +++.++.+..+.++.+.. ..++....+.++++++|
T Consensus 126 ~da~~l~iiG-~G~QA~~~~~a~~~v~~i~---~V~v--~--~r~~~~~~~~~~~l~~~~---g~~v~~~~s~~eav~~A 194 (340)
T d1x7da_ 126 PNARKMALIG-NGAQSEFQALAFHKHLGIE---EIVA--Y--DTDPLATAKLIANLKEYS---GLTIRRASSVAEAVKGV 194 (340)
T ss_dssp TTCCEEEEEC-CSTTHHHHHHHHHHHSCCC---EEEE--E--CSSHHHHHHHHHHHTTCT---TCEEEECSSHHHHHTTC
T ss_pred cCCceEEEEc-ccHHHHHHHHHHhhhccee---eeEE--E--ecChHHHHHHHHhhhhcc---CCCceecCCHHHHHhcC
Confidence 3457999999 5998887766554322122 3443 4 677788888888876421 23677777889999999
Q ss_pred cEEEEe
Q 015897 174 EWALLI 179 (398)
Q Consensus 174 DiViit 179 (398)
|+|+.+
T Consensus 195 DIi~t~ 200 (340)
T d1x7da_ 195 DIITTV 200 (340)
T ss_dssp SEEEEC
T ss_pred Cceeec
Confidence 999874
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.54 E-value=0.0063 Score=53.87 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.++|.|+||+|.+|..++..|+..|.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~ 27 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW 27 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.52 E-value=0.36 Score=42.38 Aligned_cols=113 Identities=5% Similarity=0.017 Sum_probs=66.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-------Cccccc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYELF 170 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~eal 170 (398)
...|+||++.+|..+|..|+..|. .|.+ .|++.+.++.... +...... .++.-.. .-.+.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-----~V~i----~~r~~~~~~~~~~-~~~~~~~--~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-----TVAC----HDESFKQKDELEA-FAETYPQ--LKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHH-HHHHCTT--SEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHh-hhCcEEE--eccCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999885 3554 3666666553322 2221111 1221111 123555
Q ss_pred CCCcEEEEeCCCC--CCCC--Cchhh---hHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 171 EDAEWALLIGAKP--RGPG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 171 ~dADiViitag~~--rk~g--~~r~d---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
-.-|++|..+|.. .+|- .+..+ .+..| ..+.+.+.+.|.+. ..+.||+++--
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~IV~isS~ 132 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITSA 132 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCS
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccc--ccceeeccccc
Confidence 6889999877653 2331 22222 23333 45677888888875 46777777744
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.48 E-value=0.06 Score=45.16 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc--CCCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDAE 174 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~dAD 174 (398)
+||+||| +|.+|...+..|...+-+ +++- + .|+++++++..+.... .....+++.+..+.+ .+.|
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~----~i~a-i--~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll~~~~iD 68 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNA----TISG-V--ASRSLEKAKAFATANN-----YPESTKIHGSYESLLEDPEID 68 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTE----EEEE-E--ECSSHHHHHHHHHHTT-----CCTTCEEESSHHHHHHCTTCC
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCC----EEEE-E--EeCCccccccchhccc-----cccceeecCcHHHhhhccccc
Confidence 6999999 599999998888664321 1321 2 3677777765554321 222334555444433 5688
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+|+++.
T Consensus 69 ~v~I~t 74 (184)
T d1ydwa1 69 ALYVPL 74 (184)
T ss_dssp EEEECC
T ss_pred eeeecc
Confidence 998864
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.037 Score=46.32 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
..+||+|+||+|.+|+.++..+...+- +.|. -.+|+.... -.-.|+.+........+.+..+..+.++++|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~------~~lv-~~~~~~~~~--~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEG------VQLG-AALEREGSS--LLGSDAGELAGAGKTGVTVQSSLDAVKDDFD 73 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT------EECC-CEECCTTCT--TCSCCTTCSSSSSCCSCCEESCSTTTTTSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC------CEEE-EEEecccch--hccchhhhhhccccCCceeeccHHHHhcccc
Confidence 368999999999999999998887642 2211 112321110 0112222211001124556667788899999
Q ss_pred EEEE
Q 015897 175 WALL 178 (398)
Q Consensus 175 iVii 178 (398)
+||=
T Consensus 74 ViID 77 (162)
T d1diha1 74 VFID 77 (162)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8864
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.38 E-value=0.04 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=17.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHh
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAA 118 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~ 118 (398)
.+++||+||| +|.+|..+...++.
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~ 25 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLR 25 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHH
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHh
Confidence 4568999999 69999875544443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.16 Score=45.22 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=71.2
Q ss_pred CEEE-EEcCCCchHHHHHHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec---------
Q 015897 97 VNIA-VSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--------- 164 (398)
Q Consensus 97 ~KI~-IiGA~G~vG~~la~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--------- 164 (398)
++|+ |+||++.||..++..|+.. +. .|.+ .++++++++..+.+|+....... ....++.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~-----~Vi~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~ 73 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVL----TARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRD 73 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEE----EESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHH
Confidence 4675 6699999999999999875 43 2444 37888999988888875431110 0011110
Q ss_pred CcccccCCCcEEEEeCCCCC-CCC--Cchh---hhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 165 NPYELFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 165 ~~~eal~dADiViitag~~r-k~g--~~r~---dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.-.+.+..-|++|..+|... .+. .+.. ..+..|.--...+.+.+-..-.+.+.||+++.-.
T Consensus 74 ~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~ 140 (275)
T d1wmaa1 74 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM 140 (275)
T ss_dssp HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred HHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 12244567899999988642 222 2222 2355554444444444444333568888888543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=93.36 E-value=0.41 Score=42.16 Aligned_cols=114 Identities=10% Similarity=0.018 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC---------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (398)
-+.|.|+||++.||..+|..|+..|. .+.+. .++.+.++.. .++.... +.. ++. +..|
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~-----~vii~----~r~~~~~~~~-~~~~~~~-~~~-~~~~~~~d~~~~~~~~~ 72 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNL-----KNFVI----LDRVENPTAL-AELKAIN-PKV-NITFHTYDVTVPVAESK 72 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCC-----SEEEE----EESSCCHHHH-HHHHHHC-TTS-EEEEEECCTTSCHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-----EEEEE----ECCcccHHHH-HHHHhhC-CCC-CEEEEEeecCCCHHHHH
Confidence 46899999999999999999999885 24441 2222333322 2222211 111 111 1111
Q ss_pred -----cccccCCCcEEEEeCCCCCCCCCchhhhHHHHH----HHHHHHHHHHHHhc-CCCeEEEEECC
Q 015897 166 -----PYELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGN 223 (398)
Q Consensus 166 -----~~eal~dADiViitag~~rk~g~~r~dll~~N~----~i~~~i~~~i~~~a-~p~a~vIvvtN 223 (398)
-.+.+..-|++|..+|.......+ ..++.|. -..+.+.+.+.+.. .+.+.||+++-
T Consensus 73 ~~~~~~~~~~g~iDilvnnAG~~~~~~~~--~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS 138 (254)
T d1sbya1 73 KLLKKIFDQLKTVDILINGAGILDDHQIE--RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCTTCHH--HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEeCCCCCCHHHHH--HHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence 123356889999998865433322 2344443 36677777775531 35688888863
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.18 E-value=0.16 Score=44.51 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHH---HHHHHhhhcCCCcceEE-EecCcccccC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVK-IGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g---~a~DL~d~~~~~~~~v~-i~~~~~eal~ 171 (398)
.+++.|+||++.||..++..|+..|. .|.+ .|++++.++. ...|+.+.. .+. ....-.+.+.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~Dv~~~~-----~v~~~~~~~~~~~g 72 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGH-----KVAV----THRGSGAPKGLFGVEVDVTDSD-----AVDRAFTAVEEHQG 72 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSSCCCTTSEEEECCTTCHH-----HHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCcchhcCceEEEEecCCHH-----HHHHHHHHHHHhcC
Confidence 45888999999999999999999885 2443 2444333221 011111100 000 0012345566
Q ss_pred CCcEEEEeCCCCC-CC--CCchh---hhHHHH----HHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 172 DAEWALLIGAKPR-GP--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 172 dADiViitag~~r-k~--g~~r~---dll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.-|++|..+|... ++ ..+.. ..++.| ..+.+...+.+.+. ..+.||+++--.
T Consensus 73 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Iv~isS~~ 134 (237)
T d1uzma1 73 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN--KFGRMIFIGSVS 134 (237)
T ss_dssp SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred CceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--CCCceEEEcchh
Confidence 7899999888653 22 12222 234444 34567777888874 677888887443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.075 Score=43.72 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~-la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
++||+||| +|++|.. .+..+...+-+ ++. .++ |.+.++++..+.++. .+ ..++..+.+++.|
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~----~i~-~v~--d~~~~~~~~~~~~~~---~~------~~~~~~~l~~~~D 63 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDW----TLQ-GAW--SPTRAKALPICESWR---IP------YADSLSSLAASCD 63 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSE----EEE-EEE--CSSCTTHHHHHHHHT---CC------BCSSHHHHHTTCS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCc----EEE-EEE--echhHhhhhhhhccc---cc------ccccchhhhhhcc
Confidence 36999999 5999975 45555543321 122 223 677777765555432 11 2334445568999
Q ss_pred EEEEeC
Q 015897 175 WALLIG 180 (398)
Q Consensus 175 iViita 180 (398)
+|+++.
T Consensus 64 ~V~I~t 69 (164)
T d1tlta1 64 AVFVHS 69 (164)
T ss_dssp EEEECS
T ss_pred cccccc
Confidence 998874
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.055 Score=40.54 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.+||+|+|+ |..|.+++..|...+. .+.+ +|...+.+.. .++.+ ...+.......+.+.+.|+
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~-----~v~~--~D~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~d~ 67 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGV-----TPRV--MDTRMTPPGL----DKLPE-----AVERHTGSLNDEWLMAADL 67 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTC-----CCEE--EESSSSCTTG----GGSCT-----TSCEEESBCCHHHHHHCSE
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCC-----EEEE--eeCCcCchhH----HHHhh-----ccceeecccchhhhccCCE
Confidence 458999995 9999999999999875 2443 3322121111 11111 1234444456777899999
Q ss_pred EEEeCCCCC
Q 015897 176 ALLIGAKPR 184 (398)
Q Consensus 176 Viitag~~r 184 (398)
||+.-|.|.
T Consensus 68 vi~SPGi~~ 76 (93)
T d2jfga1 68 IVASPGIAL 76 (93)
T ss_dssp EEECTTSCT
T ss_pred EEECCCCCC
Confidence 999988763
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.51 Score=37.84 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--C----ccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (398)
-.|.|+|. |.+|..++..|...+. ++.+ +|.+++.......++.... ..+..+. + ....+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~-----~v~v----Id~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i 69 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQ-----NVTV----ISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-----CEEE----EeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhcc
Confidence 36999995 9999999999998765 3544 3555555444444433211 1222221 1 23557
Q ss_pred CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 171 ~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
.+||.||++.+.. ..|+.+ +..+++. +|+..++.-.|
T Consensus 70 ~~a~~vi~~~~~d-----------~~n~~~----~~~~r~~-~~~~~iia~~~ 106 (153)
T d1id1a_ 70 DRCRAILALSDND-----------ADNAFV----VLSAKDM-SSDVKTVLAVS 106 (153)
T ss_dssp TTCSEEEECSSCH-----------HHHHHH----HHHHHHH-TSSSCEEEECS
T ss_pred ccCCEEEEccccH-----------HHHHHH----HHHHHHh-CCCCceEEEEc
Confidence 7899999875421 234333 3344555 57766555543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.22 Score=40.91 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc-ccc---
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-ELF--- 170 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-eal--- 170 (398)
+.-+|.|+|+ |.+|...+..+...|.- .|.+ +|.++++++ .+.++... .-+.....+. +..
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~----~Vi~----~d~~~~rl~-~a~~~Ga~-----~~~~~~~~~~~~~~~~~ 90 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAA----QVVV----TDLSATRLS-KAKEIGAD-----LVLQISKESPQEIARKV 90 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----EESCHHHHH-HHHHTTCS-----EEEECSSCCHHHHHHHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCc----eEEe----ccCCHHHHH-HHHHhCCc-----ccccccccccccccccc
Confidence 3468999995 99999999888877641 2433 478888877 56554210 0111111111 111
Q ss_pred -----CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 171 -----EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 171 -----~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
.++|+||-+.|.+ ..+.... +- ..+++.+++++.|.+
T Consensus 91 ~~~~g~g~Dvvid~~G~~---------------~~~~~a~---~~-~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 91 EGQLGCKPEVTIECTGAE---------------ASIQAGI---YA-TRSGGTLVLVGLGSE 132 (171)
T ss_dssp HHHHTSCCSEEEECSCCH---------------HHHHHHH---HH-SCTTCEEEECSCCCS
T ss_pred cccCCCCceEEEeccCCc---------------hhHHHHH---HH-hcCCCEEEEEecCCC
Confidence 3789999987743 2222222 22 258899999988754
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.84 E-value=0.032 Score=43.91 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++.||+|||| |.+|.-+|..|...|.
T Consensus 20 ~~p~~v~IiGg-G~iG~E~A~~l~~~g~ 46 (117)
T d1onfa2 20 KESKKIGIVGS-GYIAVELINVIKRLGI 46 (117)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECC-chHHHHHHHHHHhccc
Confidence 44679999995 9999999999987664
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.62 E-value=0.25 Score=42.77 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.||.|+||+|.+|..++..|+..|.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~ 27 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY 27 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999885
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.55 E-value=0.21 Score=44.07 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=49.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEE-EecC----------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~---------- 165 (398)
+.+.|+||++.||.+++..|+..|. .|++. .+.+++.++....++++.. . ++. +..|
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vvi~---~~~~~~~~~~~~~~~~~~g-~---~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGA-----SVVVN---YGSSSKAAEEVVAELKKLG-A---QGVAIQADISKPSEVVAL 74 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEE---cCCChHHHHHHHHHHHHcC-C---CceEecCCCCCHHHHHHH
Confidence 4778889999999999999999886 35442 2456666777777776533 1 111 1111
Q ss_pred ---cccccCCCcEEEEeCCCC
Q 015897 166 ---PYELFEDAEWALLIGAKP 183 (398)
Q Consensus 166 ---~~eal~dADiViitag~~ 183 (398)
..+.+..-|++|..+|..
T Consensus 75 ~~~~~~~~g~idilinnag~~ 95 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGME 95 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCCC
T ss_pred HHHHHHHcCCCcEEEeccccc
Confidence 234555789999988764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.47 E-value=0.024 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|||.|+||+|++|++++..|...|.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~ 26 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV 26 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999988775
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.32 E-value=0.11 Score=48.05 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (398)
...+++||| +|..+..-+..+....-+. .|.+ + +++.++.+..+.++++.. +....+..+++.+||
T Consensus 124 ~~~~l~iiG-aG~QA~~~~~al~~~~~i~---~i~v--~--~r~~e~~~~~~~~~~~~~------~~~~~~~~~a~~~aD 189 (320)
T d1omoa_ 124 NSSVFGFIG-CGTQAYFQLEALRRVFDIG---EVKA--Y--DVREKAAKKFVSYCEDRG------ISASVQPAEEASRCD 189 (320)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCCC---EEEE--E--CSSHHHHHHHHHHHHHTT------CCEEECCHHHHTSSS
T ss_pred CccEEEEec-CcccHHHHHHHHHHHhhhh---hccc--c--cCCHHHHHHHHHHHHhcC------Cccccchhhhhcccc
Confidence 457999999 5999988877766533222 3543 4 688889988888877542 122346788899999
Q ss_pred EEEEe
Q 015897 175 WALLI 179 (398)
Q Consensus 175 iViit 179 (398)
+|+.+
T Consensus 190 iV~ta 194 (320)
T d1omoa_ 190 VLVTT 194 (320)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.30 E-value=0.36 Score=39.29 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec--Cccc----
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYE---- 168 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~e---- 168 (398)
...+|.|+| +|.||...+..+...|. .+.. +|.++++++ .+.++.... .+.... .+.+
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga-----~vi~----v~~~~~r~~-~a~~~ga~~-----~~~~~~~~~~~~~~~~ 89 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGA-----FVVC----TARSPRRLE-VAKNCGADV-----TLVVDPAKEEESSIIE 89 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH-HHHHTTCSE-----EEECCTTTSCHHHHHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcc-----cccc----cchHHHHHH-HHHHcCCcE-----EEeccccccccchhhh
Confidence 346899999 59999999988877774 2332 478888876 565543111 111111 1111
Q ss_pred c-----cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCch
Q 015897 169 L-----FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (398)
Q Consensus 169 a-----l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (398)
. =.++|+||-+.|.+ ..+... ++- ..|+|.+++++.|..
T Consensus 90 ~~~~~~g~g~D~vid~~g~~---------------~~~~~a---~~~-~~~~G~iv~~G~~~~ 133 (170)
T d1e3ja2 90 RIRSAIGDLPNVTIDCSGNE---------------KCITIG---INI-TRTGGTLMLVGMGSQ 133 (170)
T ss_dssp HHHHHSSSCCSEEEECSCCH---------------HHHHHH---HHH-SCTTCEEEECSCCSS
T ss_pred hhhcccccCCceeeecCCCh---------------HHHHHH---HHH-HhcCCceEEEecCCC
Confidence 1 14689999987642 122222 233 268999999998743
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.02 E-value=0.058 Score=46.16 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
||+..+||+|||| |-+|.+.|+.|...|.
T Consensus 2 ~~~~~~kVvVIGa-GiaGl~~A~~L~~~G~ 30 (268)
T d1c0pa1 2 MMHSQKRVVVLGS-GVIGLSSALILARKGY 30 (268)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEECc-cHHHHHHHHHHHHCCC
Confidence 5566779999995 9999999999999875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=91.92 E-value=0.3 Score=36.83 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=49.1
Q ss_pred hccCCCEEEEEcCCCchH-HHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCccccc
Q 015897 92 SWKKMVNIAVSGAAGMIA-NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG-~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (398)
++++.+||-+|| -|.+| +++|..|...|. .|. +.|..... ...+|.+.. -.+... ...+.+
T Consensus 4 ~~~~~~~ihfiG-igG~GMs~LA~~L~~~G~-----~Vs----GSD~~~~~---~~~~L~~~G----i~v~~g-~~~~~i 65 (96)
T d1p3da1 4 EMRRVQQIHFIG-IGGAGMSGIAEILLNEGY-----QIS----GSDIADGV---VTQRLAQAG----AKIYIG-HAEEHI 65 (96)
T ss_dssp CCTTCCEEEEET-TTSTTHHHHHHHHHHHTC-----EEE----EEESCCSH---HHHHHHHTT----CEEEES-CCGGGG
T ss_pred cchhCCEEEEEE-ECHHHHHHHHHHHHhCCC-----EEE----EEeCCCCh---hhhHHHHCC----CeEEEC-CccccC
Confidence 456678999999 48888 557999999886 244 35654332 223444322 134333 456678
Q ss_pred CCCcEEEEeCCCCC
Q 015897 171 EDAEWALLIGAKPR 184 (398)
Q Consensus 171 ~dADiViitag~~r 184 (398)
+++|+||.+.+.|.
T Consensus 66 ~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 66 EGASVVVVSSAIKD 79 (96)
T ss_dssp TTCSEEEECTTSCT
T ss_pred CCCCEEEECCCcCC
Confidence 99999999988763
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=91.88 E-value=0.099 Score=44.80 Aligned_cols=93 Identities=10% Similarity=0.079 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+||| .|+||+.++..+..-|. .+. .+| .....-. ..+. .+....+..+.+++||+
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~fg~-----~v~--~~d--~~~~~~~--~~~~---------~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAFGF-----NVL--FYD--PYLSDGV--ERAL---------GLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EEC--TTSCTTH--HHHH---------TCEECSSHHHHHHHCSE
T ss_pred CceEEEec-cccccccceeeeecccc-----cee--ecc--Ccccccc--hhhh---------ccccccchhhccccCCE
Confidence 36999999 59999999998876553 232 243 3222111 1110 11223456788899999
Q ss_pred EEEeCCC-CCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~-~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++.... +...++ .|.+ .++.. .+++++||++=-
T Consensus 108 i~~~~plt~~T~~l-------i~~~-------~l~~m-k~~a~lIN~sRG 142 (193)
T d1mx3a1 108 VTLHCGLNEHNHHL-------INDF-------TVKQM-RQGAFLVNTARG 142 (193)
T ss_dssp EEECCCCCTTCTTS-------BSHH-------HHTTS-CTTEEEEECSCT
T ss_pred EEEeecccccchhh-------hhHH-------HHhcc-CCCCeEEecCCc
Confidence 9986432 221222 1111 23333 689999998843
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=91.82 E-value=0.11 Score=42.84 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=44.9
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHhcCcCCCCCceEEEeccc---ccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC
Q 015897 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiG-A~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~---D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
..||+++| +..+|-.+++..+..-|. .+.+ ... ..+++..+ .+.++... ....+.++.+..++++
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~-----~i~~--~~P~~~~~~~~~~~-~~~~~~~~---~~~~i~~~~d~~~ai~ 71 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGM-----NFVA--CGPEELKPRSDVFK-RCQEIVKE---TDGSVSFTSNLEEALA 71 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTC-----EEEE--ESCGGGCCCHHHHH-HHHHHHHH---HCCEEEEESCHHHHHT
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC-----EEEE--ecchhhhhhhhHHH-HHHHHHhh---cCCceEEEecHHHhhh
Confidence 46999999 334688888887776553 2433 221 11122211 22222211 1236778888899999
Q ss_pred CCcEEEEeCC
Q 015897 172 DAEWALLIGA 181 (398)
Q Consensus 172 dADiViitag 181 (398)
+||+|....-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999988643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=91.80 E-value=0.25 Score=41.70 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
..+|+|+| .|.||..++..+..-+. .+. .+|.....+. ...+. .+....+..+.+++||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~--~~d~~~~~~~---~~~~~---------~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPFDV-----HLH--YTDRHRLPES---VEKEL---------NLTWHATREDMYPVCDV 103 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-----EEE--EECSSCCCHH---HHHHH---------TCEECSSHHHHGGGCSE
T ss_pred ccceeecc-ccccchhhhhhhhccCc-----eEE--EEeecccccc---ccccc---------cccccCCHHHHHHhccc
Confidence 46999999 59999999998876543 232 3432211111 11111 12233467889999999
Q ss_pred EEEeCCC-CCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~-~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++.... +...++ + |. +.++.. .+++++||++=-
T Consensus 104 v~~~~plt~~T~~l-----i--~~-------~~l~~m-k~ga~lIN~aRG 138 (188)
T d2naca1 104 VTLNCPLHPETEHM-----I--ND-------ETLKLF-KRGAYIVNTARG 138 (188)
T ss_dssp EEECSCCCTTTTTC-----B--SH-------HHHTTS-CTTEEEEECSCG
T ss_pred hhhcccccccchhh-----h--HH-------HHHHhC-CCCCEEEecCch
Confidence 9886432 211111 1 11 123333 689999999854
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=91.79 E-value=0.039 Score=51.37 Aligned_cols=188 Identities=10% Similarity=0.080 Sum_probs=91.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEe-cC--ccccc---
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYELF--- 170 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~eal--- 170 (398)
|||.|+||+|+||++|+..|+..+. .+++ ++|. .+... ....+.+.. ...++... .| +.+.+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~-----~vv~-~~d~-~~~~~---~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~ 68 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ-----DTVV-NIDK-LTYAG---NLESLSDIS--ESNRYNFEHADICDSAEITRI 68 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-----CEEE-EEEC-CCTTC---CGGGGTTTT--TCTTEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----CEEE-EEeC-CCccc---cHHHHHhhh--hcCCcEEEEccCCCHHHHHHH
Confidence 6999999999999999999998875 2322 2221 11110 011122211 11123322 22 23222
Q ss_pred -C--CCcEEEEeCCCCCCCC--CchhhhHHHHHHHHHHHHHHHHHhcC-------CCeEEEEECCCchhHHHHH-HHH--
Q 015897 171 -E--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVAS-------RNVKVIVVGNPCNTNALIC-LKN-- 235 (398)
Q Consensus 171 -~--dADiViitag~~rk~g--~~r~dll~~N~~i~~~i~~~i~~~a~-------p~a~vIvvtNP~d~~t~~~-~k~-- 235 (398)
+ +.|+||.+|+....+- .+..+.+..|......+.+.+.++.. ....+|.+|- +.+..... ...
T Consensus 69 ~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS-~~vyg~~~~~~~~~ 147 (361)
T d1kewa_ 69 FEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST-DEVYGDLPHPDEVE 147 (361)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE-GGGGCCCCCGGGSC
T ss_pred HHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecc-ceeeCCCccCCccc
Confidence 2 5799999887542111 12245667777776667666655310 1224554432 11100000 000
Q ss_pred -CCCCC---------CceEEecCchhHHHHHHHHHHHcCcCcCceeeEEEEeccC--CCccccccceEEcCccc
Q 015897 236 -APSIP---------AKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS--TTQVPDFLNARINGLPV 297 (398)
Q Consensus 236 -~~~~~---------~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~~v~V~G~Hg--~s~vp~~S~a~I~G~p~ 297 (398)
....| ++..=+.+=+...++-...+++.|++...++...|+|.++ ++.+|.+-+.-..|+|+
T Consensus 148 ~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~ 221 (361)
T d1kewa_ 148 NSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPL 221 (361)
T ss_dssp TTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCE
T ss_pred cccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCc
Confidence 00000 0000000112334555555677788887887777888665 34567664444455554
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=91.77 E-value=0.2 Score=42.14 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=45.0
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCcCCCCCceEEEecccccc--hhhHHHHHHHHhhhcCCCcceEEEecCcccccC
Q 015897 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (398)
Q Consensus 96 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~--~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (398)
..||+++| -| +|..+++..+..-|. .+.+ ..-+.- .+.+...+.+.... ....+.++.+..++++
T Consensus 5 ~l~i~~vG-D~~nnv~~Sli~~~~~~g~-----~l~~--~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~~a~~ 73 (183)
T d1duvg2 5 EMTLVYAG-DARNNMGNSMLEAAALTGL-----DLRL--VAPQACWPEAALVTECRALAQQ---NGGNITLTEDVAKGVE 73 (183)
T ss_dssp GCEEEEES-CTTSHHHHHHHHHHHHHCC-----EEEE--ECCGGGCCCHHHHHHHHHHHHH---TTCEEEEESCHHHHHT
T ss_pred CCEEEEEc-CCccHHHHHHHHHHHHcCC-----EEEE--EechHhhhhHHHHHHHHHHHHh---cCCceEEEechhhccc
Confidence 47999999 34 577888777766553 2433 221110 11222233332221 2246778888999999
Q ss_pred CCcEEEEeCCC
Q 015897 172 DAEWALLIGAK 182 (398)
Q Consensus 172 dADiViitag~ 182 (398)
++|+|..+--.
T Consensus 74 ~aDvvyt~~w~ 84 (183)
T d1duvg2 74 GADFIYTDVWV 84 (183)
T ss_dssp TCSEEEECCSS
T ss_pred cCCEEEEEehh
Confidence 99999887543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.60 E-value=0.15 Score=43.17 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+||| .|.||..++..+..-|. .|.. + |++.. +.. .....+..+.+++||+
T Consensus 42 gk~vgIiG-~G~IG~~va~~l~~~g~-----~v~~--~--d~~~~----------~~~------~~~~~~l~ell~~sDi 95 (181)
T d1qp8a1 42 GEKVAVLG-LGEIGTRVGKILAALGA-----QVRG--F--SRTPK----------EGP------WRFTNSLEEALREARA 95 (181)
T ss_dssp TCEEEEES-CSTHHHHHHHHHHHTTC-----EEEE--E--CSSCC----------CSS------SCCBSCSHHHHTTCSE
T ss_pred CceEEEec-cccccccceeeeecccc-----cccc--c--ccccc----------ccc------eeeeechhhhhhccch
Confidence 35899999 59999999998876554 2332 3 44321 111 1122456899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (398)
|++..- ..+ .++ .++ | .+.++.. .+++++||++=
T Consensus 96 v~~~~p--l~~-~t~-~li--~-------~~~l~~m-k~~ailIN~~R 129 (181)
T d1qp8a1 96 AVCALP--LNK-HTR-GLV--K-------YQHLALM-AEDAVFVNVGR 129 (181)
T ss_dssp EEECCC--CST-TTT-TCB--C-------HHHHTTS-CTTCEEEECSC
T ss_pred hhcccc--ccc-ccc-ccc--c-------cceeeec-cccceEEeccc
Confidence 998642 111 111 111 1 1334443 68999999883
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.59 E-value=0.21 Score=42.51 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=28.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHH
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~ 143 (398)
.++-||.|||| |.+|..-+.....-|- .+.+ + |.+.++++
T Consensus 27 V~pa~VvViGa-GvaG~~Aa~~A~~lGA-----~V~v--~--D~~~~~~~ 66 (183)
T d1l7da1 27 VPPARVLVFGV-GVAGLQAIATAKRLGA-----VVMA--T--DVRAATKE 66 (183)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCSTTHH
T ss_pred cCCcEEEEEcC-cHHHHHHHHHHHHcCC-----EEEE--E--eccHHHHH
Confidence 45679999995 9999998887766553 2433 3 66666665
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=91.57 E-value=0.85 Score=39.58 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=65.8
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccc-ccchhhHHHHHHHHhhhcCCCcceEEEe-cC--c-
Q 015897 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIG-IN--P- 166 (398)
Q Consensus 92 ~~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~-D~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~- 166 (398)
.|++-..|.|+||+|.||..++..|+..|.- .|+| ... +.+.+.++....+|+... .++.+. .| +
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~----~vvl--~~R~~~~~~~~~~~~~~l~~~g----~~v~~~~~Dv~d~ 74 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAP----HLLL--VSRSGPDADGAGELVAELEALG----ARTTVAACDVTDR 74 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCS----EEEE--EESSGGGSTTHHHHHHHHHHTT----CEEEEEECCTTCH
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCC----EEEE--EeCCccCHHHHHHHHHHHHhcc----ccccccccccchH
Confidence 3566678999999999999999999998851 1443 211 223345555666665322 122221 11 1
Q ss_pred ---------ccccCCCcEEEEeCCCCCCCC---Cchh---hhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Q 015897 167 ---------YELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (398)
Q Consensus 167 ---------~eal~dADiViitag~~rk~g---~~r~---dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (398)
.....+-|.|+..+|.....- ++.. ..+..|..-...+.+.+... +.+.+|+++
T Consensus 75 ~~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~--~~~~iv~~S 143 (259)
T d2fr1a1 75 ESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFS 143 (259)
T ss_dssp HHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEE
T ss_pred HHHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc--CCceEeeec
Confidence 111225677888877653221 1222 22445555555566555553 456666665
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=91.41 E-value=0.11 Score=45.16 Aligned_cols=75 Identities=19% Similarity=0.095 Sum_probs=43.0
Q ss_pred cCCCEEEEEcCCCchHH-HHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC-
Q 015897 94 KKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~-~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~- 171 (398)
.++.||+|||+ |.+|. +++..+...+-+ +|+ .+ .|++.++++..+.++.- + ...+..+++-.+.++
T Consensus 31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~~----~iv-av--~d~~~~~a~~~~~~~~i---~-~~~~~~~~d~~ell~~ 98 (221)
T d1h6da1 31 DRRFGYAIVGL-GKYALNQILPGFAGCQHS----RIE-AL--VSGNAEKAKIVAAEYGV---D-PRKIYDYSNFDKIAKD 98 (221)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTCSSE----EEE-EE--ECSCHHHHHHHHHHTTC---C-GGGEECSSSGGGGGGC
T ss_pred CCCEEEEEEcC-cHHHHHHHHHHHHhCCCc----eEE-EE--ecCCHHHHHHHHHhhcc---c-cccccccCchhhhccc
Confidence 45789999994 99996 455554433211 122 12 37788888766655320 1 123334444444454
Q ss_pred -CCcEEEEeC
Q 015897 172 -DAEWALLIG 180 (398)
Q Consensus 172 -dADiViita 180 (398)
+.|+|+++.
T Consensus 99 ~~iD~V~I~t 108 (221)
T d1h6da1 99 PKIDAVYIIL 108 (221)
T ss_dssp TTCCEEEECS
T ss_pred ccceeeeecc
Confidence 578888864
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=91.40 E-value=0.1 Score=43.43 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
++||+|+| .|++|+..+..|....- +.|.-+ .|++.+... ...+....+..+...+.|+
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~------~elvav-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~D~ 61 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPD------MDLVGI-FSRRATLDT-------------KTPVFDVADVDKHADDVDV 61 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSS------EEEEEE-EESSSCCSS-------------SSCEEEGGGGGGTTTTCSE
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCC------cEEEEE-Eeccccccc-------------ccccccchhhhhhccccce
Confidence 57999999 59999998888766432 322111 255433211 1123334455666789999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
|+++..
T Consensus 62 Vvi~tp 67 (170)
T d1f06a1 62 LFLCMG 67 (170)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 998754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=90.84 E-value=0.22 Score=43.57 Aligned_cols=26 Identities=27% Similarity=0.096 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGM--IANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~--vG~~la~~L~~~~~ 121 (398)
-+++.|+||+|. +|.++|..|+..|-
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga 33 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGA 33 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 468999997665 99999999999885
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.83 E-value=0.063 Score=49.21 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.++|.|+||+|++|++++..|+..|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~ 28 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH 28 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC
Confidence 356999999999999999999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.82 E-value=0.28 Score=40.69 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcc----cc--
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----EL-- 169 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----ea-- 169 (398)
--+|.|+|| |.||...+..+...|.. .|.. +|.++++++ .+.++.... -+.....+. +.
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~----~Vi~----~~~~~~~~~-~a~~lGa~~-----vi~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLGAE----NVIV----IAGSPNRLK-LAEEIGADL-----TLNRRETSVEERRKAIM 93 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTBS----EEEE----EESCHHHHH-HHHHTTCSE-----EEETTTSCHHHHHHHHH
T ss_pred CCEEEEECC-Cccchhheecccccccc----cccc----ccccccccc-ccccccceE-----EEeccccchHHHHHHHH
Confidence 358999996 99999988888776641 2433 478888876 666653100 011111111 11
Q ss_pred ----cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 ----FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 ----l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
=+++|+||-+.|.+. .+.+.. +-. .|+|++++++.+
T Consensus 94 ~~~~~~g~Dvvid~vG~~~---------------~~~~a~---~~l-~~~G~iv~~G~~ 133 (182)
T d1vj0a2 94 DITHGRGADFILEATGDSR---------------ALLEGS---ELL-RRGGFYSVAGVA 133 (182)
T ss_dssp HHTTTSCEEEEEECSSCTT---------------HHHHHH---HHE-EEEEEEEECCCC
T ss_pred HhhCCCCceEEeecCCchh---------------HHHHHH---HHh-cCCCEEEEEeec
Confidence 135899999877542 222222 222 588999888754
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.81 E-value=0.28 Score=43.01 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=63.6
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCc-ceEEEec--------
Q 015897 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI-------- 164 (398)
Q Consensus 96 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~-~~v~i~~-------- 164 (398)
-+++.|+||+| .+|..++..|+..|. .|++ .+++++..+ .+.++........ ....++.
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga-----~V~i----~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA-----EVAL----SYQAERLRP-EAEKLAEALGGALLFRADVTQDEELDALF 77 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTC-----EEEE----EESSGGGHH-HHHHHHHHTTCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHH-HHHHhhhccCcccccccccCCHHHHHHHH
Confidence 35788999877 699999999999885 3554 245544333 3333332210100 0011110
Q ss_pred -CcccccCCCcEEEEeCCCCCC---CC----Cchhh---hHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 165 -NPYELFEDAEWALLIGAKPRG---PG----MERAG---LLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 165 -~~~eal~dADiViitag~~rk---~g----~~r~d---ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
...+.+..-|++|..+|.... .+ .+..+ .+..|..-...+++....+-..++.||+++--
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~ 148 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYY 148 (256)
T ss_dssp HHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECG
T ss_pred HHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeeh
Confidence 123445678999988775321 11 12222 35556555555555544443346778877643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=90.79 E-value=0.48 Score=41.52 Aligned_cols=78 Identities=13% Similarity=0.006 Sum_probs=46.7
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcc-eEEEe---------
Q 015897 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR-EVKIG--------- 163 (398)
Q Consensus 96 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~-~v~i~--------- 163 (398)
-+++.|+||+| .||.++|..|+..|. .|++ . +++++ ++..+.++......... ...++
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga-----~V~i--~--~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAF--T--YLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEE--E--ESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHH
Confidence 46899999877 599999999999886 3554 2 55543 33345555443211110 00011
Q ss_pred cCcccccCCCcEEEEeCCCC
Q 015897 164 INPYELFEDAEWALLIGAKP 183 (398)
Q Consensus 164 ~~~~eal~dADiViitag~~ 183 (398)
....+.+...|++|..+|..
T Consensus 75 ~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 75 NSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp HHHHHHTSCEEEEEECCCCC
T ss_pred HHHHHHcCCCCeEEeecccc
Confidence 11235567889999887754
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.16 Score=42.57 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhH---HHHHHHHhhhcCCCcceEEEe-cC----cc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL---EGVAMELEDSLFPLLREVKIG-IN----PY 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l---~g~a~DL~d~~~~~~~~v~i~-~~----~~ 167 (398)
..+|.|+|| |.+|.++++.|...+.- .|.+ + +++.+++ ...+.++.... + ..+.+. .. ..
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~g~~----~i~i--~--nR~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~ 85 (182)
T d1vi2a1 18 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKL--F--NRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 85 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE--E--ECSSTTHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHH
T ss_pred CCEEEEECC-cHHHHHHHHHHhhcCCc----eEee--e--ccchHHHHHHHHHHHHHHhhc-C--cceEeeecccccchh
Confidence 469999995 99999999999998752 2444 3 5654444 34444444322 2 122222 11 23
Q ss_pred cccCCCcEEEEeCC
Q 015897 168 ELFEDAEWALLIGA 181 (398)
Q Consensus 168 eal~dADiViitag 181 (398)
+.+.++|+||.+-.
T Consensus 86 ~~~~~~diiIN~Tp 99 (182)
T d1vi2a1 86 EALASADILTNGTK 99 (182)
T ss_dssp HHHHTCSEEEECSS
T ss_pred hhhcccceeccccC
Confidence 45689999998743
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.70 E-value=1.3 Score=38.24 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHH
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~ 145 (398)
+|++|.|+||++.||..++..|+...--+. .|.+ .++++++++..
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~----~~r~~~~~~~~ 45 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFT----TCRNREQAKEL 45 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEE----EESCTTSCHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEE----EECCHHHHHHH
Confidence 367899999999999999998875322111 2443 36777777643
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.63 E-value=0.27 Score=40.60 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccc---cchhhHHHHHHHHhhhcCCCcceEEEecCcccccCC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE---RSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D---~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (398)
..||+++|-..+|..+++..+..-|. .+.+ ...+ ..++.++ .+.+..... ...+.++.+..+++++
T Consensus 4 gl~Ia~VGD~~nv~~Sli~~l~~~g~-----~v~~--~~P~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~d~~ea~~~ 72 (163)
T d1pvva2 4 GVKVVYVGDGNNVAHSLMIAGTKLGA-----DVVV--ATPEGYEPDEKVIK-WAEQNAAES---GGSFELLHDPVKAVKD 72 (163)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHTTC-----EEEE--ECCTTCCCCHHHHH-HHHHHHHHH---TCEEEEESCHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-----eEEE--ecccccCCChHHHH-HHHHhhhcc---cceEEEecCHHHHhhh
Confidence 46999999866687888777766553 2333 2111 1222222 222222111 1356778888999999
Q ss_pred CcEEEEeCCC
Q 015897 173 AEWALLIGAK 182 (398)
Q Consensus 173 ADiViitag~ 182 (398)
||+|..+--.
T Consensus 73 adviy~~~~~ 82 (163)
T d1pvva2 73 ADVIYTDVWA 82 (163)
T ss_dssp CSEEEECCCC
T ss_pred ccEEeeccee
Confidence 9998876433
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.60 E-value=0.25 Score=41.17 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCchHHHH-HHHHHhc-CcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccC--
Q 015897 96 MVNIAVSGAAGMIANHL-LFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~l-a~~L~~~-~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (398)
++||+||| +|.+|..+ +..+... +.+ .|+- + .|.+.++++..+.++.. ..++++..+.++
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~~~----~i~~-v--~d~~~~~~~~~~~~~~~--------~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSHLF----EITA-V--TSRTRSHAEEFAKMVGN--------PAVFDSYEELLESG 66 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTTTE----EEEE-E--ECSSHHHHHHHHHHHSS--------CEEESCHHHHHHSS
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCCCe----EEEE-E--EeccHhhhhhhhccccc--------cceeeeeecccccc
Confidence 47999999 59999874 5555442 211 1321 2 36777777655544321 123444444444
Q ss_pred CCcEEEEeC
Q 015897 172 DAEWALLIG 180 (398)
Q Consensus 172 dADiViita 180 (398)
+.|+|+++.
T Consensus 67 ~id~v~I~t 75 (181)
T d1zh8a1 67 LVDAVDLTL 75 (181)
T ss_dssp CCSEEEECC
T ss_pred ccceeeccc
Confidence 578888864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.50 E-value=0.29 Score=40.61 Aligned_cols=97 Identities=8% Similarity=0.004 Sum_probs=56.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC-cccc---
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-PYEL--- 169 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-~~ea--- 169 (398)
++--+|.|+|| |.||...+..+...|.. .|.. +|.++++++ .+.++-... -+....+ ..+.
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~----~Vi~----~d~~~~r~~-~a~~lGa~~-----~i~~~~~~~~~~v~~ 90 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAG----RIIG----VGSRPICVE-AAKFYGATD-----ILNYKNGHIEDQVMK 90 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCS----CEEE----ECCCHHHHH-HHHHHTCSE-----EECGGGSCHHHHHHH
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhccccc----cccc----ccchhhhHH-HHHhhCccc-----cccccchhHHHHHHH
Confidence 34468999995 99999888877765541 2433 477878766 555553111 0101111 1111
Q ss_pred c---CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 F---EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 l---~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+ +++|+||.+.|.+. .+.+. ++-. .|++.+++++.|
T Consensus 91 ~t~g~G~D~vid~~g~~~---------------~~~~a---~~~~-~~~G~iv~~G~~ 129 (174)
T d1jqba2 91 LTNGKGVDRVIMAGGGSE---------------TLSQA---VKMV-KPGGIISNINYH 129 (174)
T ss_dssp HTTTSCEEEEEECSSCTT---------------HHHHH---HHHE-EEEEEEEECCCC
T ss_pred HhhccCcceEEEccCCHH---------------HHHHH---HHHH-hcCCEEEEEeec
Confidence 1 45999999887542 22222 2222 589999998744
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.14 Score=49.30 Aligned_cols=77 Identities=19% Similarity=0.107 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccc-----------------hhhHHHHHHHHhhhcCCCcc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLR 158 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~-----------------~~~l~g~a~DL~d~~~~~~~ 158 (398)
..||.|||| |.+|+.++..|+..|+ +. |. |+|-|.- ..+++..+..++... |..
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~---i~--lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n-p~v- 107 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGF-RQ---IH--VIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV-PNC- 107 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTC-CC---EE--EECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS-TTC-
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCC-Ce---EE--EEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC-CCC-
Confidence 369999995 9999999999999987 32 33 3554421 234444444444432 221
Q ss_pred eEEEe-----cCcccccCCCcEEEEeCC
Q 015897 159 EVKIG-----INPYELFEDAEWALLIGA 181 (398)
Q Consensus 159 ~v~i~-----~~~~eal~dADiViitag 181 (398)
++... ....+-+++.|+||.+..
T Consensus 108 ~i~~~~~~i~~~~~~~~~~~DlVi~~~D 135 (426)
T d1yovb1 108 NVVPHFNKIQDFNDTFYRQFHIIVCGLD 135 (426)
T ss_dssp CCEEECSCGGGBCHHHHTTCSEEEECCS
T ss_pred ceEeeeccccchHHHHHHhcchheeccC
Confidence 22221 223456899999998753
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=90.24 E-value=0.27 Score=41.84 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-.+|+||| .|.||+.++..+..-+. .+. .+| .......... .. ......+..+.++.||+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~-----~v~--~~d--~~~~~~~~~~---~~-------~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDM-----DID--YFD--THRASSSDEA---SY-------QATFHDSLDSLLSVSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EEC--SSCCCHHHHH---HH-------TCEECSSHHHHHHHCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhcc-----ccc--ccc--ccccccchhh---cc-------cccccCCHHHHHhhCCe
Confidence 46999999 59999999988776554 232 243 3222211111 11 11122345788999999
Q ss_pred EEEeCC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag-~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++... .+...++ + |.+ .++.. .+++++||++=-
T Consensus 107 v~l~~plt~~T~~l-----i--~~~-------~l~~m-k~~a~lIN~sRG 141 (191)
T d1gdha1 107 FSLNAPSTPETRYF-----F--NKA-------TIKSL-PQGAIVVNTARG 141 (191)
T ss_dssp EEECCCCCTTTTTC-----B--SHH-------HHTTS-CTTEEEEECSCG
T ss_pred EEecCCCCchHhhe-----e--cHH-------HhhCc-CCccEEEecCCc
Confidence 998642 2221111 1 111 22333 689999999844
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.80 E-value=0.093 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+|+.|+||+|+||++|+..|+..|.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~ 26 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY 26 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC
Confidence 4888999999999999999999885
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=89.77 E-value=0.59 Score=34.68 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHH-HHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 97 VNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~-la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
|||-+|| -|.+|.+ +|..|...|. .|. +.|+.+... ...|++... .+.. ..+.+.++++|+
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~-----~Vs----GSD~~~~~~---t~~L~~~Gi----~i~~-gh~~~~i~~~d~ 63 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGN-----DVY----GSNIEETER---TAYLRKLGI----PIFV-PHSADNWYDPDL 63 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTC-----EEE----EECSSCCHH---HHHHHHTTC----CEES-SCCTTSCCCCSE
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCC-----eEE----EEeCCCChh---HHHHHHCCC----eEEe-eecccccCCCCE
Confidence 6899999 5888874 7888888886 243 356654332 233554331 2322 246777899999
Q ss_pred EEEeCCCCC
Q 015897 176 ALLIGAKPR 184 (398)
Q Consensus 176 Viitag~~r 184 (398)
||.+.+.|+
T Consensus 64 vV~SsAI~~ 72 (89)
T d1j6ua1 64 VIKTPAVRD 72 (89)
T ss_dssp EEECTTCCT
T ss_pred EEEecCcCC
Confidence 999988763
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.76 E-value=0.4 Score=39.70 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=58.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc--cccc-
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--YELF- 170 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~--~eal- 170 (398)
++-.+|.|+|| |.+|...+..+...+.. .|.. +|.++++++ .+.++-... -+.....+ .+..
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~----~Vi~----~d~~~~kl~-~a~~lGa~~-----~i~~~~~d~~~~~~~ 90 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGAS----RIIG----VGTHKDKFP-KAIELGATE-----CLNPKDYDKPIYEVI 90 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCS----EEEE----ECSCGGGHH-HHHHTTCSE-----EECGGGCSSCHHHHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCc----eeec----cCChHHHHH-HHHHcCCcE-----EEcCCCchhHHHHHH
Confidence 33468999995 99999998888777641 2433 478888886 565543111 01111111 1111
Q ss_pred -----CCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 171 -----EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 171 -----~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
.+.|+||.+.|. .+.+.+....+. .+.+++++++.|
T Consensus 91 ~~~~~~G~d~vid~~g~---------------~~~~~~~~~~~~---~~~G~~v~vG~~ 131 (174)
T d1p0fa2 91 CEKTNGGVDYAVECAGR---------------IETMMNALQSTY---CGSGVTVVLGLA 131 (174)
T ss_dssp HHHTTSCBSEEEECSCC---------------HHHHHHHHHTBC---TTTCEEEECCCC
T ss_pred HHhcCCCCcEEEEcCCC---------------chHHHHHHHHHH---HhcCceEEEEEe
Confidence 378999998764 234444443332 256888888865
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=89.61 E-value=0.35 Score=40.64 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.+||+|||| |..|-+.|..|..+|.
T Consensus 42 ~~k~V~IIGa-GPAGL~AA~~la~~G~ 67 (179)
T d1ps9a3 42 QKKNLAVVGA-GPAGLAFAINAAARGH 67 (179)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCcEEEEECc-cHHHHHHHHHHHhhcc
Confidence 3579999995 9999999999999986
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=89.42 E-value=0.11 Score=47.26 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcC
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVL 122 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~ 122 (398)
..|+||+|||| |..|-++|..|+..+..
T Consensus 2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~ 29 (335)
T d2gv8a1 2 PTIRKIAIIGA-GPSGLVTAKALLAEKAF 29 (335)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHTTTCC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHhCCC
Confidence 45789999995 99999999998877653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=1.2 Score=35.95 Aligned_cols=129 Identities=16% Similarity=0.026 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecC---cccccC
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYELFE 171 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---~~eal~ 171 (398)
+-.+|.|+|+ |.+|...+..+...|. . .|. +|.+.++++ .+.++-.- .+.-+.+ .....+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~---~i~-----~~~~~~~~~-~a~~lGad------~~i~~~~~~~~~~~~~ 92 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGA-H---VVA-----FTTSEAKRE-AAKALGAD------EVVNSRNADEMAAHLK 92 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-E---EEE-----EESSGGGHH-HHHHHTCS------EEEETTCHHHHHTTTT
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccc-c---chh-----hccchhHHH-HHhccCCc------EEEECchhhHHHHhcC
Confidence 3468999995 9999998887777664 1 232 255556654 45554311 1111111 234456
Q ss_pred CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHH-HHHHH-CCCCCCceEEe--c
Q 015897 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL-ICLKN-APSIPAKNFHA--L 247 (398)
Q Consensus 172 dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~-~~~k~-~~~~~~kvig~--g 247 (398)
..|+||.+.|.+. .+. ..++-. .++|.+++++-|.+.... ..... ...+ +++|. +
T Consensus 93 ~~D~vid~~g~~~---------------~~~---~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~l~~k~~--~i~Gs~~~ 151 (168)
T d1uufa2 93 SFDFILNTVAAPH---------------NLD---DFTTLL-KRDGTMTLVGAPATPHKSPEVFNLIMKRR--AIAGSMIG 151 (168)
T ss_dssp CEEEEEECCSSCC---------------CHH---HHHTTE-EEEEEEEECCCC-------CHHHHHTTTC--EEEECCSC
T ss_pred CCceeeeeeecch---------------hHH---HHHHHH-hcCCEEEEeccCCCCcccccHHHHHHCCc--EEEEEeec
Confidence 8999999876542 011 122233 589999999876553221 11111 1122 55663 4
Q ss_pred CchhHHHHHHHHHH
Q 015897 248 TRLDENRAKCQLAL 261 (398)
Q Consensus 248 t~lDs~Rl~~~lA~ 261 (398)
+.-|..++-.++++
T Consensus 152 ~~~d~~e~l~l~a~ 165 (168)
T d1uufa2 152 GIPETQEMLDFCAE 165 (168)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55565556555554
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.14 Score=44.87 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=27.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEeccccc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER 137 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~ 137 (398)
.||.|+|+ |.+|++++..|+..|+ + .|+|+|-|.
T Consensus 31 ~~VliiG~-GglGs~va~~La~~Gv-g-----~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGL-GGLGCAASQYLASAGV-G-----NLTLLDFDT 64 (247)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-S-----EEEEECCCB
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-C-----eEEEECCcc
Confidence 59999995 9999999999999997 2 344566654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.53 E-value=0.7 Score=38.21 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc--c------
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--Y------ 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~--~------ 167 (398)
--.|+|+|+ |.+|...+..+...+.. .|.. +|.++++++ .+.++-... -+.....+ .
T Consensus 30 g~tVlI~G~-GgvGl~ai~~ak~~G~~----~Vi~----vd~~~~kl~-~Ak~~GA~~-----~in~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 30 GSTCVVFGL-GGVGLSVIMGCKSAGAS----RIIG----IDLNKDKFE-KAMAVGATE-----CISPKDSTKPISEVLSE 94 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSCGGGHH-HHHHHTCSE-----EECGGGCSSCHHHHHHH
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCc----eEEE----ecCcHHHHH-HHHhcCCcE-----EECccccchHHHHHHHH
Confidence 457999995 99999999988877642 2432 488889988 777664221 01011111 1
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
-.-.++|+||.+.|.+ ..+.+-. .....+.+.+++++.|.
T Consensus 95 ~~g~G~d~vi~~~g~~---------------~~~~~a~---~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 95 MTGNNVGYTFEVIGHL---------------ETMIDAL---ASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp HHTSCCCEEEECSCCH---------------HHHHHHH---TTSCTTTCEEEECSCCC
T ss_pred hccccceEEEEeCCch---------------HHHHHHH---HHhhcCCeEEEEEEccc
Confidence 1225799999987642 2333322 22222458999998874
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=88.48 E-value=0.99 Score=34.72 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+.||+|||| |.+|.-+|..|...|.
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~ 46 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGA 46 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCC
Confidence 4679999995 9999999999998775
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.25 Score=43.01 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
-+.+.|+||++.+|.+++..|+..|. .|.+ .|++++.++..+.++..
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~ 51 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGA-----SAVL----LDLPNSGGEAQAKKLGN 51 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSSHHHHHHHHCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHhCC
Confidence 34667899999999999999999986 2544 37788888888877754
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.28 E-value=0.35 Score=40.68 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
.++|+|+| .|.+|..++..+..-+. .|. .+ |....... ..+. . +.. .+..+.++.||+
T Consensus 44 ~k~vgiiG-~G~IG~~va~~~~~fg~-----~v~--~~--d~~~~~~~--~~~~---~------~~~-~~l~ell~~sDi 101 (184)
T d1ygya1 44 GKTVGVVG-LGRIGQLVAQRIAAFGA-----YVV--AY--DPYVSPAR--AAQL---G------IEL-LSLDDLLARADF 101 (184)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EE--CTTSCHHH--HHHH---T------CEE-CCHHHHHHHCSE
T ss_pred ceeeeecc-ccchhHHHHHHhhhccc-----eEE--ee--cCCCChhH--Hhhc---C------cee-ccHHHHHhhCCE
Confidence 46999999 59999999998765443 232 23 44322211 1111 1 111 346788999999
Q ss_pred EEEeCC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag-~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++... .+...++ + |.+ .+... .+++++||++=-
T Consensus 102 v~~~~Plt~~T~~l-----i--n~~-------~l~~m-k~~a~lIN~sRG 136 (184)
T d1ygya1 102 ISVHLPKTPETAGL-----I--DKE-------ALAKT-KPGVIIVNAARG 136 (184)
T ss_dssp EEECCCCSTTTTTC-----B--CHH-------HHTTS-CTTEEEEECSCT
T ss_pred EEEcCCCCchhhhh-----h--hHH-------HHhhh-CCCceEEEecch
Confidence 998642 2211111 1 111 22333 689999999854
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.96 E-value=0.15 Score=39.36 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.|++|+|| |.+|.-+|..|...|.
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~ 45 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGA 45 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTC
T ss_pred CCeEEEECC-CHHHHHHHHHHhhccc
Confidence 579999995 9999999999988774
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=87.81 E-value=0.19 Score=43.22 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||+|||| |..|.++|..|...|+
T Consensus 4 ~~kV~IiGa-G~aGl~~A~~L~~~G~ 28 (265)
T d2voua1 4 TDRIAVVGG-SISGLTAALMLRDAGV 28 (265)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCC
Confidence 469999995 9999999999999886
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=87.64 E-value=0.17 Score=44.28 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+++||+|||| |..|-+.|+.|...|.
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~ 54 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAGH 54 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCCC
Confidence 45679999995 9999999999999875
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=87.60 E-value=1.3 Score=38.11 Aligned_cols=148 Identities=14% Similarity=0.053 Sum_probs=77.5
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---------
Q 015897 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--------- 164 (398)
Q Consensus 96 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~--------- 164 (398)
-++|.|+||+| .+|.+++..|+..|. .|.++ +++++.++ .+.++.... ..........
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~-----~V~i~----~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGA-----ELAFT----YQNDKLKG-RVEEFAAQL-GSDIVLQCDVAEDASIDTM 73 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC-----EEEEE----ESSTTTHH-HHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCC-----EEEEE----eCCHHHHH-HHHHHHhhc-CCcceeecccchHHHHHHH
Confidence 45889999877 688999999999885 35542 45544333 334433322 1111111111
Q ss_pred --CcccccCCCcEEEEeCCCCCCC---CC--c--hh----hhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchh----
Q 015897 165 --NPYELFEDAEWALLIGAKPRGP---GM--E--RA----GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT---- 227 (398)
Q Consensus 165 --~~~eal~dADiViitag~~rk~---g~--~--r~----dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~---- 227 (398)
...+.+..-|++|..++..... .. + .. ..+..|...+..+.+.+..+-.++..+++++.....
T Consensus 74 ~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~ 153 (258)
T d1qsga_ 74 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP 153 (258)
T ss_dssp HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT
T ss_pred HHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCC
Confidence 1234455667888776543211 11 1 11 123445555666666665553455667776654321
Q ss_pred --HHHHHHHHCCCCCCceEEecCchhHHHHHHHHHHHcCcCcCcee
Q 015897 228 --NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (398)
Q Consensus 228 --~t~~~~k~~~~~~~kvig~gt~lDs~Rl~~~lA~~lgv~~~~V~ 271 (398)
.+|-+.|.+ -..+-+.+|+.++ ++.|+
T Consensus 154 ~~~~Y~~sKaa---------------l~~ltr~lA~el~--~~gIr 182 (258)
T d1qsga_ 154 NYNVMGLAKAS---------------LEANVRYMANAMG--PEGVR 182 (258)
T ss_dssp TTTHHHHHHHH---------------HHHHHHHHHHHHT--TTTEE
T ss_pred CcHHHHHHHHH---------------HHHHHHHHHHHhC--ccCce
Confidence 122222221 2456777888887 55665
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=87.59 E-value=0.45 Score=40.57 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=38.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+||| .|+||+.++..+..-|. .|. .+|...+.+ .. .+.. ...+..+.+++||+
T Consensus 43 gk~vgIiG-~G~IG~~va~~l~~fg~-----~V~--~~d~~~~~~----~~---~~~~--------~~~~l~~~l~~sDi 99 (197)
T d1j4aa1 43 DQVVGVVG-TGHIGQVFMQIMEGFGA-----KVI--TYDIFRNPE----LE---KKGY--------YVDSLDDLYKQADV 99 (197)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTC-----EEE--EECSSCCHH----HH---HTTC--------BCSCHHHHHHHCSE
T ss_pred CCeEEEec-ccccchhHHHhHhhhcc-----ccc--ccCcccccc----cc---ccee--------eecccccccccccc
Confidence 35999999 59999999999876554 232 243322211 01 1111 11346788999999
Q ss_pred EEEeC
Q 015897 176 ALLIG 180 (398)
Q Consensus 176 Viita 180 (398)
|++..
T Consensus 100 i~~~~ 104 (197)
T d1j4aa1 100 ISLHV 104 (197)
T ss_dssp EEECS
T ss_pred ccccC
Confidence 99874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.29 E-value=0.13 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|||+|||| |-+|.+.|+.|+..+.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC
Confidence 68999995 9999999999998764
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.18 E-value=3.1 Score=33.02 Aligned_cols=118 Identities=13% Similarity=-0.035 Sum_probs=67.2
Q ss_pred ccCCCEEEEEcCC---CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc
Q 015897 93 WKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (398)
Q Consensus 93 ~~~~~KI~IiGA~---G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (398)
..+++.|+||||+ +..|+.++..|...|. +|.. +|+.. .++. ....+.+..+.
T Consensus 16 L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~-----~v~p------VnP~~-----~~i~--------G~~~~~sl~dl 71 (139)
T d2d59a1 16 LTRYKKIALVGASPKPERDANIVMKYLLEHGY-----DVYP------VNPKY-----EEVL--------GRKCYPSVLDI 71 (139)
T ss_dssp HHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC-----EEEE------ECTTC-----SEET--------TEECBSSGGGC
T ss_pred HhcCCeEEEEeecCCCCCchHHHHHHHHHCCC-----EEEE------ECCcc-----cccC--------CCccccccccc
Confidence 4456799999987 5689999999988775 2332 23221 1111 12223333333
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEEe-cC
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA-LT 248 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig~-gt 248 (398)
=..-|+|++... .+.+.++.+++.+. +.+++++..+.=.+.....+.+ . ++ +++|- |.
T Consensus 72 p~~iD~v~i~vp----------------~~~~~~~~~e~~~~-g~k~v~~~~G~~~ee~~~~a~~-~-gi--~vig~~C~ 130 (139)
T d2d59a1 72 PDKIEVVDLFVK----------------PKLTMEYVEQAIKK-GAKVVWFQYNTYNREASKKADE-A-GL--IIVANRCM 130 (139)
T ss_dssp SSCCSEEEECSC----------------HHHHHHHHHHHHHH-TCSEEEECTTCCCHHHHHHHHH-T-TC--EEEESCCH
T ss_pred CccceEEEEEeC----------------HHHHHHHHHHHHHh-CCCEEEEeccccCHHHHHHHHH-C-CC--EEEcCCcC
Confidence 346888888742 45666666666665 4666555444444444444433 3 45 66764 55
Q ss_pred chhHHHH
Q 015897 249 RLDENRA 255 (398)
Q Consensus 249 ~lDs~Rl 255 (398)
..+..||
T Consensus 131 ~v~~~rl 137 (139)
T d2d59a1 131 MREHERL 137 (139)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 5565554
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.00 E-value=0.18 Score=42.64 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
|.||+|.| .|.||..++..+..++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~ 24 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQP 24 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCT
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCC
Confidence 78999999 6999999999988765
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.5 Score=38.75 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC-cCCCCCceEEEecccccchhhHHHHHHHHh
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGE-VLGPDQPIALKLLGSERSLQALEGVAMELE 150 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~-~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~ 150 (398)
|+||+|+|++|+||...+.-+-... .| .|. .+-...|-+.+..++.++.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f----~v~--~Lsa~~N~~~L~~q~~~f~ 50 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHF----RVV--ALVAGKNVTRMVEQCLEFS 50 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTE----EEE--EEEESSCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCc----EEE--EEEecCcHHHHHHHHHHHh
Confidence 5689999999999999988776542 11 122 2223566777777777654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=86.90 E-value=0.19 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
|||+|||| |..|.+.|+.|...|.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT 24 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC
Confidence 68999995 9999999999999875
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=86.77 E-value=0.49 Score=38.70 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
+|++|+|+|++|+||...+.-+-...- ...+..+-...|-+.|..++.++
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~lsa~~N~~~L~~q~~ef 50 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLD-----RYQVIALTANRNVKDLADAAKRT 50 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGG-----GEEEEEEEESSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCC-----CcEEEEEEeCCCHHHHHHHHHhh
Confidence 367999999999999999877765421 12222222356667777677665
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.59 Score=36.40 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+.+|+|||| |.+|.-+|..|...|.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~ 46 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGS 46 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCc
Confidence 579999995 9999999999998875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.91 E-value=1 Score=37.28 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++++|+| .|.+|..+|..+...+. .+.+ +| +++-++-...+| .+ .+ ....+++..+|+
T Consensus 24 Gk~v~V~G-yG~iG~g~A~~~rg~G~-----~V~v--~e--~dp~~al~A~~d------G~----~v-~~~~~a~~~adi 82 (163)
T d1li4a1 24 GKVAVVAG-YGDVGKGCAQALRGFGA-----RVII--TE--IDPINALQAAME------GY----EV-TTMDEACQEGNI 82 (163)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--EC--SCHHHHHHHHHT------TC----EE-CCHHHHTTTCSE
T ss_pred CCEEEEec-cccccHHHHHHHHhCCC-----eeEe--ee--cccchhHHhhcC------ce----Ee-eehhhhhhhccE
Confidence 46899999 69999999999988775 2333 44 443222112222 22 12 246899999999
Q ss_pred EEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCchhHHHHH
Q 015897 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALIC 232 (398)
Q Consensus 176 Viitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~ 232 (398)
||.+-|... - |- .+.+++. ++++++.|++ -...+-...+
T Consensus 83 vvtaTGn~~--v------------I~---~eh~~~M-KdgaIL~N~Ghfd~EId~~~L 122 (163)
T d1li4a1 83 FVTTTGCID--I------------IL---GRHFEQM-KDDAIVCNIGHFDVEIDVKWL 122 (163)
T ss_dssp EEECSSCSC--S------------BC---HHHHTTC-CTTEEEEECSSSTTSBCHHHH
T ss_pred EEecCCCcc--c------------hh---HHHHHhc-cCCeEEEEeccccceecHHHH
Confidence 998766431 0 11 1234444 6789999987 3333433333
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=85.85 E-value=0.37 Score=42.31 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-++|+|-| .|+||+.++..|...|- .++. .|.+...+.....+.. ......+.---.+|||
T Consensus 39 g~~v~IqG-~GnVG~~~a~~L~~~Ga-----kvv~----~d~~~~~~~~~~~~~g---------~~~~~~~~~~~~~cDI 99 (230)
T d1leha1 39 GLAVSVQG-LGNVAKALCKKLNTEGA-----KLVV----TDVNKAAVSAAVAEEG---------ADAVAPNAIYGVTCDI 99 (230)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHC---------CEECCGGGTTTCCCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEe----ecccHHHHHHHHHhcC---------CcccCCcccccccccE
Confidence 46999999 69999999999998875 2332 3555565554333211 1112222223358999
Q ss_pred EEEeCC
Q 015897 176 ALLIGA 181 (398)
Q Consensus 176 Viitag 181 (398)
++-++.
T Consensus 100 l~PcA~ 105 (230)
T d1leha1 100 FAPCAL 105 (230)
T ss_dssp EEECSC
T ss_pred eccccc
Confidence 988864
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=85.75 E-value=0.88 Score=38.69 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=58.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec------------
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------ 164 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~------------ 164 (398)
+||.||| .|..|..++..+...++.+ +.+..+ |.+.+.|. .+. ...++.++.
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~----v~~iai--nTD~~~L~-------~~~--a~~ki~iG~~~t~G~G~g~~p 64 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHG----VEFVAV--NTDLQVLE-------ASN--ADVKIQIGENITRGLGAGGRP 64 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTT----EEEEEE--ESCHHHHH-------TCC--CSEEEECCTTTTTTSCCTTCH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCc----eEEEEE--cCCHHHHh-------cCC--cceEEecccccCCCcccccCc
Confidence 5899999 5999999999999888743 544333 44333332 211 111222221
Q ss_pred ------------CcccccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc
Q 015897 165 ------------NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (398)
Q Consensus 165 ------------~~~eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (398)
.-.+.++++|+||+++|.. |.+.. --++++.++++... --.|-++|=|-
T Consensus 65 ~~g~~aa~e~~~~I~~~l~~~d~vfi~AGlG---GgTGt----gaapviA~~ake~g-----~lvv~ivtlPF 125 (194)
T d1w5fa1 65 EIGEQAALESEEKIREVLQDTHMVFITAGFG---GGTGT----GASPVIAKIAKEMG-----ILTVAIVTTPF 125 (194)
T ss_dssp HHHHHHHHHTHHHHHHHTTTCSEEEEEEETT---SSHHH----HHHHHHHHHHHHTT-----CEEEEEEEECC
T ss_pred hhhHhHHHHHHHHHHHHhcCCCeEEEEEecC---CCccc----chHHHHHHHHHHcC-----CceEEEEeech
Confidence 1346789999999998753 22221 12566666665432 12355566664
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.70 E-value=1.2 Score=37.29 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCCcE
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (398)
-.+|+|+| .|.||..++..+..-+. .+. .+ |..... ... ......+..+.++.||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~--~~--d~~~~~-------------~~~-~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESLGM-----YVY--FY--DIENKL-------------PLG-NATQVQHLSDLLNMSDV 99 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEE--EE--CSSCCC-------------CCT-TCEECSCHHHHHHHCSE
T ss_pred ceEEEEee-cccchhhhhhhcccccc-----eEe--ec--cccccc-------------hhh-hhhhhhhHHHHHhhccc
Confidence 46999999 59999999998876554 232 24 332110 000 11122356788899999
Q ss_pred EEEeCCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 176 ALLIGAKP-RGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 176 Viitag~~-rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
|++..... ...++ + |.+ .++.. ++++++||++=.
T Consensus 100 i~i~~plt~~T~~l-----i--~~~-------~l~~m-k~~a~lIN~aRG 134 (188)
T d1sc6a1 100 VSLHVPENPSTKNM-----M--GAK-------EISLM-KPGSLLINASRG 134 (188)
T ss_dssp EEECCCSSTTTTTC-----B--CHH-------HHHHS-CTTEEEEECSCS
T ss_pred eeecccCCcchhhh-----c--cHH-------HHhhC-CCCCEEEEcCcH
Confidence 99975322 11121 1 111 23333 689999999855
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.51 E-value=0.27 Score=41.79 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+||+|||| |..|-+.|+.|+..|+
T Consensus 2 KkV~IIGa-G~aGL~aA~~La~~G~ 25 (373)
T d1seza1 2 KRVAVIGA-GVSGLAAAYKLKIHGL 25 (373)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTSC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC
Confidence 58999995 9999999999999876
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.29 E-value=0.35 Score=38.35 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=24.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 93 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..+..||+|||| |.+|..+|..|...+.
T Consensus 32 ~~~~k~v~VIGg-G~iG~E~A~~l~~~g~ 59 (133)
T d1q1ra2 32 LIADNRLVVIGG-GYIGLEVAATAIKANM 59 (133)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred hccCCEEEEECC-chHHHHHHHHHHhhCc
Confidence 345679999995 9999999999998875
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.73 E-value=0.7 Score=37.91 Aligned_cols=95 Identities=21% Similarity=0.244 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec-Ccccc---cC
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYEL---FE 171 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~ea---l~ 171 (398)
-.+|.|+|| |.+|...+..+...+.. .+.. .|.++++++ .+.++-... -+.... +..+. +.
T Consensus 29 g~~VlI~G~-G~iG~~~~~~ak~~g~~----~v~~----~~~~~~k~~-~a~~~Ga~~-----~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 29 ASSFVTWGA-GAVGLSALLAAKVCGAS----IIIA----VDIVESRLE-LAKQLGATH-----VINSKTQDPVAAIKEIT 93 (174)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHHTCS----EEEE----EESCHHHHH-HHHHHTCSE-----EEETTTSCHHHHHHHHT
T ss_pred CCEEEEeCC-CHHHhhhhhcccccccc----eeee----eccHHHHHH-HHHHcCCeE-----EEeCCCcCHHHHHHHHc
Confidence 458999996 99999998887776641 2332 367777766 566653111 011111 11221 21
Q ss_pred --CCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 172 --DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 172 --dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
+.|+||.+.|.+ ..+.+.. +-. .|+|++++++-|
T Consensus 94 ~gg~D~vid~~G~~---------------~~~~~~~---~~~-~~~G~i~~~G~~ 129 (174)
T d1f8fa2 94 DGGVNFALESTGSP---------------EILKQGV---DAL-GILGKIAVVGAP 129 (174)
T ss_dssp TSCEEEEEECSCCH---------------HHHHHHH---HTE-EEEEEEEECCCC
T ss_pred CCCCcEEEEcCCcH---------------HHHHHHH---hcc-cCceEEEEEeec
Confidence 489999987642 2333222 222 589999998754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.49 E-value=0.35 Score=39.25 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
++-.+|.|+|+ |.+|...+..+...|. .+.. +|.++++++ .+.++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~-----~Vi~----~~~~~~~~~-~a~~~ 70 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGL-----HVAA----IDIDDAKLE-LARKL 70 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH-HHHHT
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCC-----ccce----ecchhhHHH-hhhcc
Confidence 34468999995 9999998888777763 2332 477777775 55554
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.40 E-value=0.28 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCc
Q 015897 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 98 KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
||+|||| |.+|.++|..|...|+
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~ 26 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGI 26 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCC
Confidence 8999996 9999999999999987
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.34 E-value=0.3 Score=41.95 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++||+|||| |..|.++|..|...|+
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi 25 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAGI 25 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC
Confidence 479999995 9999999999999885
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.32 E-value=0.34 Score=43.97 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+++||+|||| |..|.+.|..|...|.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~ 26 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGH 26 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCC
Confidence 3579999995 9999999999998764
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.28 E-value=0.26 Score=40.47 Aligned_cols=25 Identities=28% Similarity=0.093 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
..||+|||| |..|...|..|...|.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~ 28 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGY 28 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCC
Confidence 459999995 9999999999999886
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=0.38 Score=41.33 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++..||+|||| |.-|-+.|..|...|.
T Consensus 3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~ 29 (449)
T d2dw4a2 3 KKTGKVIIIGS-GVSGLAAARQLQSFGM 29 (449)
T ss_dssp SCCCEEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhCCC
Confidence 45679999995 9999999999999885
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=83.90 E-value=1.7 Score=35.63 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCc--------c
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--------Y 167 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~--------~ 167 (398)
-.+|.|+|+ |.||...+..+...|- . .|.. .|.++++++ .+.++-... -+.....+ .
T Consensus 29 G~~VlV~G~-G~iGl~a~~~ak~~Ga-~---~Vi~----~d~~~~r~~-~a~~~Ga~~-----~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 29 GSTCAVFGL-GCVGLSAIIGCKIAGA-S---RIIA----IDINGEKFP-KAKALGATD-----CLNPRELDKPVQDVITE 93 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-S---EEEE----ECSCGGGHH-HHHHTTCSE-----EECGGGCSSCHHHHHHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHHhCC-c---eeee----eccchHHHH-HHHHhCCCc-----ccCCccchhhhhhhHhh
Confidence 368999995 9999999888877664 1 2433 478888876 666654211 00001111 1
Q ss_pred cccCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCC-eEEEEECCCch
Q 015897 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVGNPCN 226 (398)
Q Consensus 168 eal~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~-a~vIvvtNP~d 226 (398)
..-.++|+||-+.|.+ ..+.+- ++-. .++ +.+++++.|.+
T Consensus 94 ~~~~G~d~vie~~G~~---------------~~~~~a---~~~~-~~g~G~~v~vG~~~~ 134 (174)
T d1e3ia2 94 LTAGGVDYSLDCAGTA---------------QTLKAA---VDCT-VLGWGSCTVVGAKVD 134 (174)
T ss_dssp HHTSCBSEEEESSCCH---------------HHHHHH---HHTB-CTTTCEEEECCCSSS
T ss_pred hhcCCCcEEEEecccc---------------hHHHHH---HHHh-hcCCeEEEecCCCCC
Confidence 1226799999988753 222222 2222 464 89999988755
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.42 E-value=2.1 Score=34.35 Aligned_cols=70 Identities=26% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA~G~--vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
..||+++|=.-+ |..+++..+..-|. .+.+ +. .+..... . .++.+ .....+.++.+..+++++|
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~-----~~~~-~~-p~~~~~~-~---~~~~~---~~~~~~~~~~d~~eai~~a 68 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRP-----KLVY-LI-SPQLLRA-R---KEILD---ELNYPVKEVENPFEVINEV 68 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCC-----SEEE-EE-CCGGGCC-C---HHHHT---TCCSCEEEESCGGGTGGGC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCC-----eeEE-Ee-ccccccc-c---hhhcc---cCCCeEEEEeCHHHHhhcC
Confidence 469999995333 88888887766553 2322 11 1111110 0 11111 1234677888999999999
Q ss_pred cEEEEe
Q 015897 174 EWALLI 179 (398)
Q Consensus 174 DiViit 179 (398)
|+|..+
T Consensus 69 Dvvy~~ 74 (153)
T d1pg5a2 69 DVLYVT 74 (153)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 988776
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=83.39 E-value=0.38 Score=38.20 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=20.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~ 120 (398)
|||+|.||+|.+|+.++..+...+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~ 24 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG 24 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC
Confidence 689999999999999887666554
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=83.18 E-value=0.47 Score=36.39 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 015897 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (398)
Q Consensus 96 ~~KI~IiGA~G~vG~~la~~L~~~ 119 (398)
+.+|+|||| |.+|.-+|..|...
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~ 40 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAY 40 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHH
T ss_pred CCeEEEECC-ChHHHHHHHHhHhh
Confidence 579999995 99999999876643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.85 E-value=0.44 Score=39.18 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.||+|||| |..|.+.|..|...|+
T Consensus 1 P~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d1b5qa1 1 PRVIVVGA-GMSGISAAKRLSEAGI 24 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCC
Confidence 37999995 9999999999999886
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.82 E-value=1.7 Score=34.51 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+-++|.|||| |.+|..-+..|+..|-
T Consensus 12 ~gkrvLViGg-G~va~~ka~~Ll~~GA 37 (150)
T d1kyqa1 12 KDKRILLIGG-GEVGLTRLYKLMPTGC 37 (150)
T ss_dssp TTCEEEEEEE-SHHHHHHHHHHGGGTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC
Confidence 3469999995 9999999999998874
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=82.58 E-value=0.45 Score=37.05 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
+..+|+|||| |.+|..+|..|...|.
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~ 54 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGK 54 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccce
Confidence 4579999995 9999999999998875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.20 E-value=0.7 Score=37.19 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHH
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL 149 (398)
+..+|.|.|+ |.||...+..+...+. .+.. ++.++++++ .+.++
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~-----~v~~----~~~~~~r~~-~~k~~ 70 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGL-----NVVA----VDIGDEKLE-LAKEL 70 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-----EEEE----ECSCHHHHH-HHHHT
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCC-----eEec----cCCCHHHhh-hhhhc
Confidence 3468999985 9999988877777664 2332 477777765 55543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=81.84 E-value=0.46 Score=41.09 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 97 ~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
--|+|||| |-+|.++|+.|+..|.
T Consensus 5 ~DvvIIGa-Gi~Gls~A~~La~~G~ 28 (276)
T d1ryia1 5 YEAVVIGG-GIIGSAIAYYLAKENK 28 (276)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC
Confidence 45999995 9999999999999885
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| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=81.62 E-value=8 Score=30.16 Aligned_cols=120 Identities=14% Similarity=0.026 Sum_probs=65.0
Q ss_pred ccCCCEEEEEcCC---CchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccc
Q 015897 93 WKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (398)
Q Consensus 93 ~~~~~KI~IiGA~---G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (398)
..+++.|+||||+ +..|+.++..|...|. .+.+ + ..+... .++. ......+..+.
T Consensus 10 L~~pksIAVVGaS~~~~k~g~~v~~~L~~~g~-----~~~~--v--~~~~~~-----~~i~--------g~~~~~~l~~i 67 (136)
T d1iuka_ 10 LSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY-----RVLP--V--NPRFQG-----EELF--------GEEAVASLLDL 67 (136)
T ss_dssp HHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC-----EEEE--E--CGGGTT-----SEET--------TEECBSSGGGC
T ss_pred HhCCCeEEEEeecCCCCCchHHHHHHHhcCCC-----CceE--E--Eecccc-----ceee--------ceecccchhhc
Confidence 3456789999987 4588989998888876 2333 2 222110 0011 12222333333
Q ss_pred cCCCcEEEEeCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCchhHHHHHHHHCCCCCCceEE-ecC
Q 015897 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH-ALT 248 (398)
Q Consensus 170 l~dADiViitag~~rk~g~~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~~~~~~~kvig-~gt 248 (398)
=...|+|++.-. .+.+.++.+++.+. ..+++++.-+--.+-+..++.+ . ++ ++|+ -|.
T Consensus 68 ~~~iD~v~v~~p----------------~~~v~~~v~~~~~~-g~k~i~~q~G~~~~e~~~~a~~-~-Gi--~vV~~~C~ 126 (136)
T d1iuka_ 68 KEPVDILDVFRP----------------PSALMDHLPEVLAL-RPGLVWLQSGIRHPEFEKALKE-A-GI--PVVADRCL 126 (136)
T ss_dssp CSCCSEEEECSC----------------HHHHTTTHHHHHHH-CCSCEEECTTCCCHHHHHHHHH-T-TC--CEEESCCH
T ss_pred cCCCceEEEecc----------------HHHHHHHHHHHHhh-CCCeEEEecCccCHHHHHHHHH-c-CC--EEEcCCcc
Confidence 346799988742 34444445554554 4566555444334444444443 3 56 6776 466
Q ss_pred chhHHHH
Q 015897 249 RLDENRA 255 (398)
Q Consensus 249 ~lDs~Rl 255 (398)
..+..|+
T Consensus 127 ~ie~~rl 133 (136)
T d1iuka_ 127 MVEHKRL 133 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666665
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| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.38 E-value=0.3 Score=37.59 Aligned_cols=26 Identities=23% Similarity=0.108 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 95 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
.+.+|+|||| |.+|.-+|..|...|.
T Consensus 21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~ 46 (117)
T d1ebda2 21 VPKSLVVIGG-GYIGIELGTAYANFGT 46 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred cCCeEEEECC-Cccceeeeeeeccccc
Confidence 3579999995 9999999999998875
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| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=80.67 E-value=11 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=32.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhh
Q 015897 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (398)
Q Consensus 99 I~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d 151 (398)
+.|+||++.+|..++..|+..|. .|++. + .++++.++....+|..
T Consensus 5 AlITGas~GIG~aiA~~la~~Ga-----~V~i~--~-~~~~~~~~~~~~~l~~ 49 (284)
T d1e7wa_ 5 ALVTGAAKRLGRSIAEGLHAEGY-----AVCLH--Y-HRSAAEANALSATLNA 49 (284)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-----EEEEE--E-SSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC-----EEEEE--e-CCCHHHHHHHHHHHHh
Confidence 44669999999999999999885 35542 1 3456677777777764
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| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=80.64 E-value=0.54 Score=39.73 Aligned_cols=109 Identities=12% Similarity=-0.065 Sum_probs=57.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEec---Ccccc-
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYEL- 169 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~ea- 169 (398)
++-.+|.|+|| |.+|...+..+...+. . .|.. .|.++++++ .+.++-. +..+.. +..+.
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~---~Vi~----~d~~~~rl~-~a~~~Ga-------~~~~~~~~~~~~~~i 86 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGA-A---VVIV----GDLNPARLA-HAKAQGF-------EIADLSLDTPLHEQI 86 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-S---EEEE----EESCHHHHH-HHHHTTC-------EEEETTSSSCHHHHH
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcc-c---ceee----ecccchhhH-hhhhccc-------cEEEeCCCcCHHHHH
Confidence 44569999995 9999877777666553 1 2433 477777776 5554321 111111 11111
Q ss_pred -----cCCCcEEEEeCCCCCCCCC-chhhhHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Q 015897 170 -----FEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (398)
Q Consensus 170 -----l~dADiViitag~~rk~g~-~r~dll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (398)
=.++|++|-+.|.+..... ...+. ..+.+.+.+.. +- ..|+|.|++++-+
T Consensus 87 ~~~t~g~g~D~vid~vG~~~~~~~~~~~~~-~~~~~~l~~~~---~~-~r~gG~v~~~G~~ 142 (195)
T d1kola2 87 AALLGEPEVDCAVDAVGFEARGHGHEGAKH-EAPATVLNSLM---QV-TRVAGKIGIPGLY 142 (195)
T ss_dssp HHHHSSSCEEEEEECCCTTCBCSSTTGGGS-BCTTHHHHHHH---HH-EEEEEEEEECSCC
T ss_pred HHHhCCCCcEEEEECccccccCCcccceee-cCcHHHHHHHH---HH-HhcCCEEEEeeec
Confidence 2468999998875532111 11100 00112222222 22 3589999998753
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| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.35 E-value=0.4 Score=37.23 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcCc
Q 015897 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (398)
Q Consensus 94 ~~~~KI~IiGA~G~vG~~la~~L~~~~~ 121 (398)
++..+|+|||| |.+|.-+|..|...|.
T Consensus 30 ~~~~~vvIiGg-G~iG~E~A~~l~~~g~ 56 (122)
T d1xhca2 30 ENSGEAIIIGG-GFIGLELAGNLAEAGY 56 (122)
T ss_dssp HHHSEEEEEEC-SHHHHHHHHHHHHTTC
T ss_pred hcCCcEEEECC-cHHHHHHHHHhhcccc
Confidence 34579999995 9999999999998774
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| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=80.07 E-value=3.1 Score=33.40 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=40.2
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhcCcCCCCCceEEEecccccchhhHHHHHHHHhhhcCCCcceEEEecCcccccCCC
Q 015897 96 MVNIAVSGA--AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (398)
Q Consensus 96 ~~KI~IiGA--~G~vG~~la~~L~~~~~~~~~~~i~L~L~d~D~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (398)
..||+++|= .++|..+++..+..-|. .+.+ . . ++.+ . +-...+.+..+..+++++|
T Consensus 3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~-----~~~i--~--~--P~~~-------~----~~~~~~~~~~~~~ea~~~a 60 (151)
T d2at2a2 3 GLTVSIHGDIKHSRVARSNAEVLTRLGA-----RVLF--S--G--PSEW-------Q----DEENTFGTYVSMDEAVESS 60 (151)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCC-----cccc--c--C--Cchh-------h----ccccceeEEEechhccccC
Confidence 479999995 35699999888876553 2332 2 1 1111 1 1112345667788999999
Q ss_pred cEEEEeC
Q 015897 174 EWALLIG 180 (398)
Q Consensus 174 DiViita 180 (398)
|+|..+-
T Consensus 61 Dviy~~r 67 (151)
T d2at2a2 61 DVVMLLR 67 (151)
T ss_pred ceeeeeE
Confidence 9988763
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