Citrus Sinensis ID: 015911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEHQFSQGQSMNQERGWRKRPYSEMGGMVDGSAGNNSGQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEcccccccEEEEEcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccEEEEEEcccccccEEEEEcccccHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHcccccccEEccccccEcccccccccc
Coil and Loop (DISEMBL)
MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRkasglqpgmpsipqpvhdpapsptvsasrkktktsqsvaslstgapspgmhpsvqpsssalrpgpppgskgkkpksfstglagrgqvanrgssgafpangpseaatynpligrkvwtrwpednhfyeavitdynpnegrhaLVYDINTADETWewvnlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplgdieILHTETLIKEVEKVFaanhpdptdVEKAKRVLKEQELALVNAIAKledasdgeseqgehqfsqgqsmnqergwrkrpysemggmvdgsagnnsgq
Flexible Loop (DISEMBL)
MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRkelrvsdeehrellskvnaddiiLRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSasrkktktsqsvaslstgapspgmhPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQgehqfsqgqsmnqerGWRKRPYsemggmvdgsagnnsgq
Low Complexity Region (SEG)
MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRpgpppgskgkkpksFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISrkggrpgpgrgtkkpLTrgggvsgagrgrgTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEHQFSQGQSMNQERGWRKRPYSEMGGMVDGSAGNNSGQ
Disordered region (IsUnstruct)
******************SVLRAFKAQSDAITWEKESLITELRK***********LLSKVNADDIILRIREWR*********************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP*************************************************************PLGDIEILHTETLIKEVEKVFAA*******************LALVNAI****************************************************
Disordered Region (DISOPRED)
******T*IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKE**************************************************************************************************************************************YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP******************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********SVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQP***************************************************************TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE**************************RKRPYSEMGGMVDG********
Disordered Region (DISPRO)
**NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA********************************************************************************************************YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDE*****************************************************LGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLxxxxxxxxxxxxxxxxxxxxxVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDxxxxxxxxxxxxxxxxxxxxxLEDASDGESEQGEHQFSQGQSMNQERGWRKRPYSEMGGMVDGSAGNNSGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
224057174	399	predicted protein [Populus trichocarpa]	0.874	0.872	0.761	1e-147
297746393	446	unnamed protein product [Vitis vinifera]	0.896	0.800	0.718	1e-144
225435596	449	PREDICTED: uncharacterized protein LOC10	0.896	0.795	0.712	1e-143
255544742	402	conserved hypothetical protein [Ricinus	0.891	0.883	0.763	1e-142
359487460	424	PREDICTED: uncharacterized protein LOC10	0.917	0.860	0.668	1e-136
297741224	433	unnamed protein product [Vitis vinifera]	0.917	0.842	0.653	1e-135
449502209	418	PREDICTED: uncharacterized protein LOC10	0.922	0.877	0.678	1e-132
449462597	418	PREDICTED: uncharacterized protein LOC10	0.922	0.877	0.675	1e-132
147768906	1348	hypothetical protein VITISV_024453 [Viti	0.879	0.259	0.655	1e-131
7630058	414	putative protein [Arabidopsis thaliana]	0.869	0.835	0.685	1e-130

>gi|224057174|ref|XP_002299156.1| predicted protein [Populus trichocarpa] gi|222846414|gb|EEE83961.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/360 (76%), Positives = 303/360 (84%), Gaps = 12/360 (3%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           + +DM TQIH++EQ+AY+SVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL++V
Sbjct: 46  LHSDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLARV 105

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           NADD+I RIREWRKA+G+QP MPS  QP HDP PSPTVS SRKK KTSQSVASLS   PS
Sbjct: 106 NADDMIRRIREWRKANGIQPSMPSTAQPSHDPIPSPTVSGSRKKQKTSQSVASLSMVVPS 165

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAAT 179
           P +HPS+QPS+SALR GPPPGS  KKPKS  STGL+ R Q ANRGSSG F  N       
Sbjct: 166 PVLHPSMQPSTSALRHGPPPGSGNKKPKSQRSTGLSSRAQAANRGSSGVFATND------ 219

Query: 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 239
              LIG+KVWTRWPEDNHFYEAVITDYNP EGRHALVYDINT DETWEWVNLKEISPEDI
Sbjct: 220 ---LIGKKVWTRWPEDNHFYEAVITDYNPVEGRHALVYDINTGDETWEWVNLKEISPEDI 276

Query: 240 KWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKK 297
           +WEG+EPG+ R+GGRPGPGRG KK + RGG V  AGRGRGT K   KK FP  QNGIGKK
Sbjct: 277 RWEGEEPGLFRRGGRPGPGRGNKKAIARGGAVVTAGRGRGTTKGQSKKDFPLIQNGIGKK 336

Query: 298 PLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 357
            +GDIEILHT TLIKEVEKVF A+HPDP ++EKAK+ L+EQE ALVNAIA+LE+ASDGES
Sbjct: 337 AMGDIEILHTNTLIKEVEKVFGASHPDPLEIEKAKKALEEQEQALVNAIARLEEASDGES 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746393|emb|CBI16449.3| unnamed protein product [Vitis vinifera]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/362 (71%), Positives = 296/362 (81%), Gaps = 5/362 (1%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           M  DM  QIH +EQ+AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+V
Sbjct: 46  MHGDMEAQIHHIEQEAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRV 105

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           NADDII  IREWRK  GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPS
Sbjct: 106 NADDIIRSIREWRKGGGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPS 163

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKSF-STGLAGRGQVANRGSSGAFPANGPSEAAT 179
           P +HP++QPSSSAL+  P P SK KK K + S GL GR Q+ANRGSSGAF  N  +E  T
Sbjct: 164 PALHPTMQPSSSALKHAPTPRSKSKKTKPYPSAGLTGRPQLANRGSSGAFVGNEAAEGTT 223

Query: 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 239
           Y+PLIG+KVWTRWPEDNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI
Sbjct: 224 YDPLIGKKVWTRWPEDNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDI 283

Query: 240 KWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKK 297
           +WEGDE G+SR+G RPGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK
Sbjct: 284 RWEGDESGMSRRGSRPGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKK 343

Query: 298 PLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 357
               +EI +T++LIKEVE+V    +PD   + + K++LKEQE ALV+ IAKL++ASDGES
Sbjct: 344 DDSSLEIYNTDSLIKEVERVVTTANPDSVQILEVKKMLKEQEQALVDIIAKLDEASDGES 403

Query: 358 EQ 359
           E+
Sbjct: 404 EE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435596|ref|XP_002285615.1| PREDICTED: uncharacterized protein LOC100257061 [Vitis vinifera]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/365 (71%), Positives = 295/365 (80%), Gaps = 8/365 (2%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           M  DM  QIH +EQ+AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+V
Sbjct: 46  MHGDMEAQIHHIEQEAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRV 105

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           NADDII  IREWRK  GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPS
Sbjct: 106 NADDIIRSIREWRKGGGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPS 163

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKSF----STGLAGRGQVANRGSSGAFPANGPSE 176
           P +HP++QPSSSAL+  P P SK KK K      S GL GR Q+ANRGSSGAF  N  +E
Sbjct: 164 PALHPTMQPSSSALKHAPTPRSKSKKTKPSMQYPSAGLTGRPQLANRGSSGAFVGNEAAE 223

Query: 177 AATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 236
             TY+PLIG+KVWTRWPEDNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISP
Sbjct: 224 GTTYDPLIGKKVWTRWPEDNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISP 283

Query: 237 EDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGI 294
           EDI+WEGDE G+SR+G RPGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+
Sbjct: 284 EDIRWEGDESGMSRRGSRPGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGL 343

Query: 295 GKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASD 354
            KK    +EI +T++LIKEVE+V    +PD   + + K++LKEQE ALV+ IAKL++ASD
Sbjct: 344 EKKDDSSLEIYNTDSLIKEVERVVTTANPDSVQILEVKKMLKEQEQALVDIIAKLDEASD 403

Query: 355 GESEQ 359
           GESE+
Sbjct: 404 GESEE 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544742|ref|XP_002513432.1| conserved hypothetical protein [Ricinus communis] gi|223547340|gb|EEF48835.1| conserved hypothetical protein [Ricinus communis]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/363 (76%), Positives = 312/363 (85%), Gaps = 8/363 (2%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           + +DM TQIH++EQ+AY+SVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+V
Sbjct: 39  LHSDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRV 98

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           N+DDII RIREWRK +GLQPGMPS  QP HDP+PSPTVSAS KK KTSQSVASLS GAPS
Sbjct: 99  NSDDIIRRIREWRKTNGLQPGMPSTAQPAHDPSPSPTVSASHKKQKTSQSVASLSMGAPS 158

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKSF----STGLAGRGQVANRGSSGAFPANGPSE 176
           P + PS+QPSSSA R GPPPG + KKPKS     S GL GR Q ANR SSGAF AN P+E
Sbjct: 159 PAL-PSMQPSSSAFRRGPPPGPRSKKPKSSMQYPSAGLTGRAQAANRSSSGAFAANEPAE 217

Query: 177 AATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 236
           A +Y+ LIGRKVWTRWPEDNHFYEAVITDY P EGRHALVYDINTADETWEWVNLKEISP
Sbjct: 218 ATSYD-LIGRKVWTRWPEDNHFYEAVITDYKPAEGRHALVYDINTADETWEWVNLKEISP 276

Query: 237 EDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGI 294
           EDI+W+ ++ G+ R+GGRPGPGRG KK +  GGG+ GAGRGRGTMK   +K FP +QNGI
Sbjct: 277 EDIRWKDEDQGVFRRGGRPGPGRGNKKSMAHGGGLGGAGRGRGTMKGQSRKEFPLAQNGI 336

Query: 295 GKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASD 354
           G+K L DIEILHT+TLIKEVEKVF+ANH DP ++EKAK+VL+E E ALV+AIA+LEDASD
Sbjct: 337 GRKALDDIEILHTDTLIKEVEKVFSANHADPMEIEKAKKVLQEHEQALVDAIARLEDASD 396

Query: 355 GES 357
           GES
Sbjct: 397 GES 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487460|ref|XP_002273408.2| PREDICTED: uncharacterized protein LOC100263217 [Vitis vinifera]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/383 (66%), Positives = 299/383 (78%), Gaps = 18/383 (4%)

Query: 2   QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 61
           + DM TQIH +EQ+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VN
Sbjct: 49  ETDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVN 108

Query: 62  ADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSP 121
           ADD+I RIREWR+A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS 
Sbjct: 109 ADDVIRRIREWRQAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQ 168

Query: 122 GMHP-----SVQPSSSALRPGPPPGSKGKKPKS----FSTGLAGRGQVANRGSSGAFPAN 172
             HP     S QPSSSA + GP  G KGKK KS     S+G  GRGQVANRG       N
Sbjct: 169 SFHPQAIAASNQPSSSAAKRGPILGPKGKKHKSSMQYASSGPTGRGQVANRG------VN 222

Query: 173 GPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 232
            P+EAAT++PLIGRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL 
Sbjct: 223 EPAEAATFDPLIGRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLS 282

Query: 233 EISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFS 290
           EISPEDI+W+G++PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  S
Sbjct: 283 EISPEDIQWDGEDPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPS 341

Query: 291 QNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 350
           QNGIGKK   DI+ILHT+TLIKEVE+VF ANHPDP +++KAK+VLKE E AL++AI +L 
Sbjct: 342 QNGIGKKAPDDIQILHTDTLIKEVERVFTANHPDPLEIDKAKKVLKEHEQALLDAIGRLA 401

Query: 351 DASDGESEQGEHQFSQGQSMNQE 373
           D SDGES++G HQFS G SM++E
Sbjct: 402 DISDGESDEGGHQFSHGHSMDRE 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741224|emb|CBI32175.3| unnamed protein product [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/392 (65%), Positives = 299/392 (76%), Gaps = 27/392 (6%)

Query: 2   QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 61
           + DM TQIH +EQ+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VN
Sbjct: 49  ETDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVN 108

Query: 62  ADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSP 121
           ADD+I RIREWR+A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS 
Sbjct: 109 ADDVIRRIREWRQAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQ 168

Query: 122 GMHP-----SVQPSSSALRPGPPPGSKGKKPKSF-------------STGLAGRGQVANR 163
             HP     S QPSSSA + GP  G KGKK KS              S+G  GRGQVANR
Sbjct: 169 SFHPQAIAASNQPSSSAAKRGPILGPKGKKHKSVLPGASSMKSMQYASSGPTGRGQVANR 228

Query: 164 GSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223
           G       N P+EAAT++PLIGRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+
Sbjct: 229 G------VNEPAEAATFDPLIGRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSAN 282

Query: 224 ETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK- 282
           ETWEWVNL EISPEDI+W+G++PGISR+GG  G G G  + + R   V GAGRGRG  K 
Sbjct: 283 ETWEWVNLSEISPEDIQWDGEDPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKG 341

Query: 283 -PKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELA 341
             KK F  SQNGIGKK   DI+ILHT+TLIKEVE+VF ANHPDP +++KAK+VLKE E A
Sbjct: 342 QSKKDFLPSQNGIGKKAPDDIQILHTDTLIKEVERVFTANHPDPLEIDKAKKVLKEHEQA 401

Query: 342 LVNAIAKLEDASDGESEQGEHQFSQGQSMNQE 373
           L++AI +L D SDGES++G HQFS G SM++E
Sbjct: 402 LLDAIGRLADISDGESDEGGHQFSHGHSMDRE 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502209|ref|XP_004161575.1| PREDICTED: uncharacterized protein LOC101228708 [Cucumis sativus]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/373 (67%), Positives = 286/373 (76%), Gaps = 6/373 (1%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           M  DM  QIH +EQ+AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+V
Sbjct: 46  MLGDMEMQIHHIEQEAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRV 105

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           NADD+I RIREWR A+GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+
Sbjct: 106 NADDVIKRIREWRTANGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPT 163

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAAT 179
           P M  ++ PSSS LR GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   
Sbjct: 164 PAMPTTIPPSSSTLRRGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVN 223

Query: 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 239
           + PLIGRKVWTRWPEDN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI
Sbjct: 224 HEPLIGRKVWTRWPEDNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDI 283

Query: 240 KWEGDEPGISRKGGRPGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK 297
           +WE +     R G RPG GRG KK +T        G GRG    + ++  P SQNG  K+
Sbjct: 284 RWEREVSAALRGGARPGHGRGNKKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQ 343

Query: 298 PLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 357
           P GDIEILHT+TLIKEVEKVF AN PDP ++EKAK+VLK+ E +LV+AIA+LEDASDGES
Sbjct: 344 PTGDIEILHTDTLIKEVEKVFGANQPDPMEIEKAKKVLKDHEQSLVDAIARLEDASDGES 403

Query: 358 EQGEHQFSQGQSM 370
           + G   +SQGQSM
Sbjct: 404 D-GREPYSQGQSM 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462597|ref|XP_004149027.1| PREDICTED: uncharacterized protein LOC101218087 [Cucumis sativus]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/373 (67%), Positives = 286/373 (76%), Gaps = 6/373 (1%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           M  DM  QIH +EQ+AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+V
Sbjct: 46  MLGDMEMQIHHIEQEAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRV 105

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           NADD+I RIREWR A+GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+
Sbjct: 106 NADDVIKRIREWRTANGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPT 163

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAAT 179
           P M  ++ PSSS LR GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   
Sbjct: 164 PAMPTTIPPSSSTLRRGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVN 223

Query: 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 239
           + PLIGRKVWTRWPEDN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI
Sbjct: 224 HEPLIGRKVWTRWPEDNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDI 283

Query: 240 KWEGDEPGISRKGGRPGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK 297
           +WE +     R G RPG GRG +K +T        G GRG    + ++  P SQNG  K+
Sbjct: 284 RWEREVSAALRGGARPGHGRGNRKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQ 343

Query: 298 PLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 357
           P GDIEILHT+TLIKEVEKVF AN PDP ++EKAK+VLK+ E +LV+AIA+LEDASDGES
Sbjct: 344 PTGDIEILHTDTLIKEVEKVFGANQPDPMEIEKAKKVLKDHEQSLVDAIARLEDASDGES 403

Query: 358 EQGEHQFSQGQSM 370
           + G   +SQGQSM
Sbjct: 404 D-GREPYSQGQSM 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768906|emb|CAN75880.1| hypothetical protein VITISV_024453 [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/377 (65%), Positives = 287/377 (76%), Gaps = 27/377 (7%)

Query: 2   QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 61
           + DM TQIH +EQ+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VN
Sbjct: 440 ETDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVN 499

Query: 62  ADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSP 121
           ADD+I RIREWR+A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS 
Sbjct: 500 ADDVIRRIREWRQAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQ 559

Query: 122 GMHP-----SVQPSSSALRPGPPPGSKGKKPKSF-------------STGLAGRGQVANR 163
             HP     S QPSSSA + GP  G KGKK KS              S+G  GRGQVANR
Sbjct: 560 SFHPQAIAASNQPSSSAAKRGPILGPKGKKHKSVLPGASSMKSMQYASSGPTGRGQVANR 619

Query: 164 GSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223
           G       N P+EAAT++PLIGRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+
Sbjct: 620 G------VNEPAEAATFDPLIGRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSAN 673

Query: 224 ETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK- 282
           ETWEWVNL EISPEDI+W+G++PGISR+GG  G G G  + + R   V GAGRGRG  K 
Sbjct: 674 ETWEWVNLSEISPEDIQWDGEDPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKG 732

Query: 283 -PKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELA 341
             KK F  SQNGIGKK   DI+ILHT+TLIKEVE+VF ANHPDP +++KAK+VLKE E A
Sbjct: 733 QSKKDFLPSQNGIGKKAPDDIQILHTDTLIKEVERVFTANHPDPLEIDKAKKVLKEHEQA 792

Query: 342 LVNAIAKLEDASDGESE 358
           L++AI +L D SDGES+
Sbjct: 793 LLDAIGRLADISDGESD 809

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630058|emb|CAB88266.1| putative protein [Arabidopsis thaliana]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/366 (68%), Positives = 297/366 (81%), Gaps = 20/366 (5%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
           + N+M TQIH +EQ+AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+V
Sbjct: 46  VHNEMETQIHLIEQEAYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRV 105

Query: 61  NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
           NAD++I RIREWRKA+ LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PS
Sbjct: 106 NADEMIRRIREWRKANSLQS---SVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPS 161

Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKSFS-----TGLAGRGQVANRGSSGAFPANGPS 175
           P +HPS+QPSSSALR G PP     K    S     TG+AGR Q      +GA   N P 
Sbjct: 162 PSLHPSMQPSSSALRRGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPG 214

Query: 176 EAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS 235
           E+ +Y+PL+GRKVWT+WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEIS
Sbjct: 215 ESGSYDPLVGRKVWTKWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEIS 274

Query: 236 PEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGI 294
           P DI+WEG++PGISRKGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGI
Sbjct: 275 PGDIRWEGEDPGISRKGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGI 331

Query: 295 GKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASD 354
           GKK LG+IEILHTETL+KEVEKVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SD
Sbjct: 332 GKKALGEIEILHTETLLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISD 391

Query: 355 GESEQG 360
           GES+ G
Sbjct: 392 GESDDG 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2182345	397	EML3 "AT5G13020" [Arabidopsis	0.876	0.879	0.621	5.3e-111
TAIR|locus:2050594	429	EML4 "AT2G44440" [Arabidopsis	0.5	0.463	0.495	3.5e-84
TAIR|locus:2099287	383	EML1 "AT3G12140" [Arabidopsis	0.281	0.292	0.657	2.5e-83
TAIR|locus:2170179	320	EML2 "AT5G06780" [Arabidopsis	0.464	0.578	0.492	1.8e-72
TAIR|locus:2095868	319	AT3G57970 "AT3G57970" [Arabido	0.155	0.194	0.353	2.5e-11
TAIR|locus:2095858	223	AT3G57960 "AT3G57960" [Arabido	0.216	0.385	0.287	6.2e-06
TAIR|locus:2147730	326	AT5G20030 [Arabidopsis thalian	0.148	0.180	0.406	0.0001

TAIR|locus:2182345 EML3 "AT5G13020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 222/357 (62%), Positives = 266/357 (74%)

Query:     1 MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
             + N+M TQIH +EQ+AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+V
Sbjct:    46 VHNEMETQIHLIEQEAYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRV 105

Query:    61 NADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPS 120
             NAD++I RIREWRKA+ LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PS
Sbjct:   106 NADEMIRRIREWRKANSLQS---SVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPS 161

Query:   121 PGMHPSVQPSSSALRXXXXXXXXXXXXXXFSTGLAGRGQVANRGSSGAFPANGPSEAATY 180
             P +HPS+QPSSSALR               S      G +A R  +GA   N P E+ +Y
Sbjct:   162 PSLHPSMQPSSSALRRGGPPPGPKTKKPKTSMQYPSTG-IAGRPQAGAL-TNEPGESGSY 219

Query:   181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIK 240
             +PL+GRKVWT+WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+
Sbjct:   220 DPLVGRKVWTKWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIR 279

Query:   241 WEGDEPGISXXXXXXXXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFSQNGIGKKPLG 300
             WEG++PGIS                              +M+ ++  P +QNGIGKK LG
Sbjct:   280 WEGEDPGISRKGGHPGQGRGTKTMARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALG 337

Query:   301 DIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 357
             +IEILHTETL+KEVEKVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGES
Sbjct:   338 EIEILHTETLLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGES 394

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2050594 EML4 "AT2G44440" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
 Identities = 100/202 (49%), Positives = 124/202 (61%)

Query:   157 RGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 216
             RGQV NR  S    ++ P+        +GR+V T+WPEDN FY+A+IT YNP EGRHALV
Sbjct:   226 RGQVMNRLPSVPASSSEPTNGIDPESFLGRRVRTKWPEDNTFYDAIITQYNPVEGRHALV 285

Query:   217 YDINTADETWEWVNLKEISPEDIKWEGDEPGISXXXXXXXXXXXXXXXLTXXXXXXXXXX 276
             YDI T  ETWEWV L EISP DI+W G++PG+                            
Sbjct:   286 YDIATPSETWEWVRLSEISPGDIEWIGEDPGLGNRYNGQGHGLNRTTG-PNCVPQRGSGL 344

Query:   277 XXXTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLK 336
                T++  KGF  SQNG GKK   DI I  T+ LI+EVE+V  +++PDP +VE+AKRVL+
Sbjct:   345 EKNTIR--KGFRTSQNGTGKKKHLDIRIRQTDVLIREVERVLRSHNPDPYEVERAKRVLE 402

Query:   337 EQELALVNAIAKLEDASDGESE 358
             E E ALV AIAKL D SDGE+E
Sbjct:   403 EHEHALVGAIAKLGDISDGENE 424

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099287 EML1 "AT3G12140" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
 Identities = 75/114 (65%), Positives = 87/114 (76%)

Query:     5 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 64
             M TQIH +EQ+AY++VLRAFKAQSDAI+WEKESLITELRKELRVSD+EHRELLS+VN DD
Sbjct:     1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60

Query:    65 IILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGA 118
              I RIR+WR+    Q    +  QP  D  PSPT SA+RKK KT  S  + S GA
Sbjct:    61 TIQRIRDWRQGGASQITRHATIQPF-DVLPSPTFSAARKKQKTFPSY-NPSIGA 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2170179 EML2 "AT5G06780" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
 Identities = 96/195 (49%), Positives = 130/195 (66%)

Query:   171 ANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVN 230
             AN P+EA     LIGRKVWT+WPEDN FYEAV+T YN NEGRHALVYDINT +ETWEWV+
Sbjct:   128 ANEPAEA-----LIGRKVWTKWPEDNSFYEAVVTQYNANEGRHALVYDINTVNETWEWVD 182

Query:   231 LKEISPEDIKWEGDEPGISXXXXXXXXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFS 290
             L EI  +DI+W+G+E G++                                +P++    +
Sbjct:   183 LNEIPTKDIRWDGEEDGVTLNVGHGGGTTRG----NRRTLSHGGRGRGPRTQPRREHLAT 238

Query:   291 QNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 350
             +NG G+K  G+IE+ +T++L+KEVE+VF +N PDP +++KAK++LKE E AL+ AIA+L 
Sbjct:   239 ENGGGRKFFGEIELFNTDSLVKEVERVFDSNLPDPHELDKAKKLLKEHEQALIAAIARLT 298

Query:   351 DASDGESEQGEHQFS 365
             DASD ES+ GE  +S
Sbjct:   299 DASDYESD-GEEPYS 312

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2095868 AT3G57970 "AT3G57970" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:   183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDIK 240
             L+GR+V  + P+++ + E +IT Y+ N   H L+   +  D  +   WV+L+ +  ED+K
Sbjct:   201 LVGRRVHIQMPDEDEYIEFLITKYDANTETHHLLSAFSNKDYEDPCNWVDLRHVQAEDMK 260

Query:   241 W-EGD 244
             W EGD
Sbjct:   261 WPEGD 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095858 AT3G57960 "AT3G57960" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query:   160 VANRGSSGAFPANGPSEA-ATYNP--LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 216
             + N  +   F    P ++  + NP  LIG+ V  R P+   F E +I  Y+  +  H+L+
Sbjct:   114 LTNTATPSTFFVPKPVKSWGSVNPESLIGKWVSIRLPDKAKFTEYIIKAYDAEKEMHSLL 173

Query:   217 YDINTADET-----WEWVNLKEISPEDIKWEGDE 245
              + +   E      + W+++++ISP DI WEG +
Sbjct:   174 TETSNPMEVDCIDPFRWIDIRDISPNDIMWEGGQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147730 AT5G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query:     6 ATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 64
             A  +H +E DAY S +    A    ITWE+E+ IT LR +L +S+EEH   +  + +DD
Sbjct:   262 AADVHRLELDAYRSSIERLHASGPIITWEQETWITNLRLKLNISNEEHLMQIRNLISDD 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.127   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      398       356   0.00080  117 3  11 23  0.37    35
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  247 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.67u 0.16s 34.83t   Elapsed:  00:00:01
  Total cpu time:  34.67u 0.16s 34.83t   Elapsed:  00:00:01
  Start:  Thu May  9 21:11:14 2013   End:  Thu May  9 21:11:15 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I000129 hypothetical protein (399 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
pfam03735	74	pfam03735, ENT, ENT domain	1e-35
smart00743	59	smart00743, Agenet, Tudor-like domain present in p	4e-05

>gnl|CDD|146396 pfam03735, ENT, ENT domain

 Score =  125 bits (315), Expect = 1e-35
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 5  MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 64
          M  Q+H +E +AY++VLRAF+AQ DA++WEKE L+TELRKELR+SDEEHRELL +VN+D+
Sbjct: 1  MERQLHRLELEAYAAVLRAFRAQGDALSWEKEELLTELRKELRISDEEHRELLRRVNSDE 60

Query: 65 IILRIREWRKASG 77
           +L IRE R    
Sbjct: 61 RLLTIRENRSGGN 73

This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important. Length = 74

>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDI 239
             G +V      ++ ++EAV+T     +G++ + Y   +     T +W +L+   P   
Sbjct: 4   KEGDRVEVFS--EDSWWEAVVTKVL-GDGKYLVEYKGESEPLELTVDWSDLRPHPPWVD 59

Domain in plant sequences with possible chromatin-associated functions. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
KOG4675	273	consensus Uncharacterized conserved protein, conta	100.0
PF03735	73	ENT: ENT domain; InterPro: IPR005491 This entry re	99.94
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	98.76
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.14
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.4
PF09038	122	53-BP1_Tudor: Tumour suppressor p53-binding protei	96.01
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	95.3
KOG4675	273	consensus Uncharacterized conserved protein, conta	89.56
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	88.22
KOG3026	262	consensus Splicing factor SPF30 [RNA processing an	86.59

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=100.00  E-value=3.3e-54  Score=413.02  Aligned_cols=262  Identities=44%  Similarity=0.709  Sum_probs=217.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHH-HHHhcCCCC
Q 015911            2 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE-WRKASGLQP   80 (398)
Q Consensus         2 ~~d~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe-~r~~g~~q~   80 (398)
                      +.|++.+||+||++||++||+||+||+++||||||.+||+||++|+||+|||+++++++.+|++|.+||+ |+..+..|-
T Consensus         5 ~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~qe   84 (273)
T KOG4675|consen    5 RDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQE   84 (273)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchhh
Confidence            5799999999999999999999999999999999999999999999999999999999999999999994 665554332


Q ss_pred             CCCCCCCCCCCCCCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCC
Q 015911           81 GMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGLAG  156 (398)
Q Consensus        81 g~~~~~q~~hd~~Pspt~s~srKkqKts~s~~s~~~g~pSp~~~p~~qpsssa~K~g~~~~~k~kk~k~~s----s~~~g  156 (398)
                      -.+ ......+..|.++.+.++|+||+.++++++.+.+.+|+++|.+++.            +.+.+.+.+    +++++
T Consensus        85 ~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~~~  151 (273)
T KOG4675|consen   85 WSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPVSS  151 (273)
T ss_pred             hhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCCCc
Confidence            111 1223456679999999999999999999999999999999866654            222222211    12222


Q ss_pred             CcccccCCCCCCCCCCCCCCccccCccccceeecccCCCCCceeeEeee-cCCCCCceeeeecCCCCccchhhhccccCC
Q 015911          157 RGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITD-YNPNEGRHALVYDINTADETWEWVNLKEIS  235 (398)
Q Consensus       157 ~~q~~~r~~~~~~~~~~p~~~~~~~~LIGrkV~~~WPdDn~~yEa~Itd-Yn~~tg~H~LvYD~~t~~EtwEWVdL~eis  235 (398)
                      |+             ++|+     .+||||||+++||+++.|||++||+ |+..++.|+|+||+++-+++|+||||++|+
T Consensus       152 ~~-------------n~pp-----~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~  213 (273)
T KOG4675|consen  152 WG-------------NVPP-----ESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREIS  213 (273)
T ss_pred             cc-------------cCCc-----hhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCC
Confidence            22             2333     5599999999999999999999999 777889999999999999999999999999


Q ss_pred             CcCccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015911          236 PEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK  297 (398)
Q Consensus       236 PedI~W~~e~pgi~~r~~~~g~g~g~~k~~~~~g~~~~~grgrg~~k~~k~~~~~qng~~~~  297 (398)
                      ||||+|+++++++..+.+++++|.|..+.+.+++.  ..+||+|..+ |..+++.|||.+++
T Consensus       214 p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~~--~~~~~~~~~~-~~~~~~~~ngg~~~  272 (273)
T KOG4675|consen  214 PEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQS--PGARGRGPRT-RTGIPKTQNGGGRK  272 (273)
T ss_pred             HHhccccCCCCCcccccCCCCCCcccccccCCccC--ccccCCCCcc-ccccccccCccccC
Confidence            99999999999999999999999999988877662  3345555544 78899999994443

>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin

Probab=99.94  E-value=4.6e-27  Score=188.50  Aligned_cols=72  Identities=57%  Similarity=0.932  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHHhcC
Q 015911            5 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG   77 (398)
Q Consensus         5 ~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~~g~   77 (398)
                      |+++||+||++||++||+||+||++ |||+||.|||+||++|+||||||++++++|.+|+.|++||+|+++++
T Consensus         1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~   72 (73)
T PF03735_consen    1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN   72 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence            6889999999999999999999965 99999999999999999999999999999999999999999999874

Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=98.76  E-value=5.2e-09  Score=80.83  Aligned_cols=41  Identities=29%  Similarity=0.627  Sum_probs=34.8

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      -+|++|+.+||+++-||||.|++||..+.+|.|.|++||..
T Consensus         7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel   47 (55)
T PF09465_consen    7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTEL   47 (55)
T ss_dssp             -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred             cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence            37899999999999999999999999999999999999984

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.14  E-value=2.6e-06  Score=64.29  Aligned_cols=54  Identities=26%  Similarity=0.395  Sum_probs=49.0

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecC--CCCccchhhhccccCCCc
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE  237 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~--~t~~EtwEWVdL~eisPe  237 (398)
                      .+|.+|..+|++++.||+|+|+.++. +++|.|.|+.  ...+|++++.+|+-+.|.
T Consensus         4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w   59 (61)
T smart00743        4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW   59 (61)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence            47899999999999999999999999 7789999999  777899999999988764

Domain in plant sequences with possible chromatin-associated functions.

>smart00333 TUDOR Tudor domain

Probab=96.40  E-value=0.0058  Score=44.96  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             ccccceeecccCCCCCceeeEeeecCCCCCceeeeecC-CCC
Q 015911          182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  222 (398)
Q Consensus       182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~-~t~  222 (398)
                      .-+|..|..+| +|+.||.|+|+++++. +...|.|.+ ++.
T Consensus         3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~   42 (57)
T smart00333        3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNE   42 (57)
T ss_pred             CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCcc
Confidence            45788999999 9999999999999998 888888888 665

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix

Probab=96.01  E-value=0.0045  Score=54.99  Aligned_cols=41  Identities=20%  Similarity=0.549  Sum_probs=34.1

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCC
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  222 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~  222 (398)
                      .+|||++|-.+|-+++-||-++|+.. ...++..|.+|+++.
T Consensus         2 ~~~iG~rV~AkWS~n~yyY~G~I~~~-~~~~kykv~FdDG~~   42 (122)
T PF09038_consen    2 SSFIGLRVFAKWSDNGYYYPGKITSD-KGKNKYKVLFDDGYE   42 (122)
T ss_dssp             --STT-EEEEESSTTSEEEEEEEEEE-ETTTEEEEEETTS-E
T ss_pred             CcccccEEEEEEccCCcccCceEeec-CCCCeEEEEecCCcc
Confidence            57999999999998888899999994 778999999999986

The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=95.30  E-value=0.025  Score=40.34  Aligned_cols=38  Identities=18%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             cceeecccCCCCCceeeEeeecCCCCCceeeeecC-CCCc
Q 015911          185 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD  223 (398)
Q Consensus       185 GrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~-~t~~  223 (398)
                      |..+..+|++|+.||.|+|+..++ ++.-.+.|.+ ++.+
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~   39 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTE   39 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcE
Confidence            456788999999999999999998 5666666666 6654

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=89.56  E-value=5.8  Score=39.87  Aligned_cols=38  Identities=8%  Similarity=-0.218  Sum_probs=33.2

Q ss_pred             CCCCCccccCccccceeecccCCCCCceeeEeeecCCC
Q 015911          172 NGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPN  209 (398)
Q Consensus       172 ~~p~~~~~~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~  209 (398)
                      ....+++...+..++.++..|+-|+++|+..++-||..
T Consensus       173 ~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~  210 (273)
T KOG4675|consen  173 RKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLR  210 (273)
T ss_pred             ccccccccccchhhhhhhhhcccccccccCCccccccc
Confidence            44666777788999999999999999999999999984

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=88.22  E-value=0.51  Score=46.32  Aligned_cols=51  Identities=27%  Similarity=0.530  Sum_probs=38.0

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  236 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP  236 (398)
                      -||-+++..|-+|..||+|+|+.-+...+.-.|+|+--.-.   |.|.|.++=|
T Consensus        70 kvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL~~  120 (264)
T PF06003_consen   70 KVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDLKP  120 (264)
T ss_dssp             -TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhhcc
Confidence            38889999999999999999999999999888888764322   3455555533

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]

Probab=86.59  E-value=0.55  Score=46.39  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=31.9

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeec
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYD  218 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD  218 (398)
                      -||.||...|+||..||+|+|.+-.+.++.-+|.++
T Consensus        92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~  127 (262)
T KOG3026|consen   92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA  127 (262)
T ss_pred             ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence            479999999999999999999999998887777654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	2e-35
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	5e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1 Length = 133

 Score =  126 bits (317), Expect = 2e-35
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 1   MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 60
            +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + + 
Sbjct: 6   SRDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRA 64

Query: 61  NADDIILRIR----------EWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQS 110
             D+ +  I           EW         +     P      +    A+      +  
Sbjct: 65  VNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASL 124

Query: 111 VASLSTGA 118
                TG+
Sbjct: 125 PVPAETGS 132

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Length = 102

 Score =  102 bits (255), Expect = 5e-27
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 2  QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 61
          +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +  
Sbjct: 15 RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAV 73

Query: 62 ADDIILRIREWRKAS 76
           D+ +  I       
Sbjct: 74 NDERLTTIAHNMSGP 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 45/269 (16%), Positives = 73/269 (27%), Gaps = 76/269 (28%)

Query: 18  SSVLRAFKAQ---SDAITW-------EKESLITELRKELRVSDEEHRELLSKVNADDIIL 67
             V  ++K Q      I W         E+++  L+K L   D          ++ +I L
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKL 225

Query: 68  RIREWRKASGLQPGMPSIPQP--------VHDPAPSPTVSASRKKTKT-----SQSVA-S 113
           RI   +    L+  + S P          V +       +A     K       + V   
Sbjct: 226 RIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKILLTTRFKQVTDF 280

Query: 114 LSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANG 173
           LS    +   H S+   S  L       +  +        L  R            P + 
Sbjct: 281 LSAATTT---HISLDHHSMTL-------TPDEVKSLLLKYLDCR------------PQDL 318

Query: 174 PSEAATYNPL----IGRKV------WTRWPEDN-----HFYEAVITDYNPNEGRH---AL 215
           P E  T NP     I   +      W  W   N        E+ +    P E R     L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 216 V---YDINTADETWE--WVNLKEISPEDI 239
                  +         W ++ +     +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	99.92
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	99.9
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	97.32
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	97.05
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	97.02
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	96.72
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	96.51
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	96.26
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	96.18
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	96.12
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	95.05
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	96.01
2d9t_A	78	Tudor domain-containing protein 3; structural geno	96.0
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	95.67
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	95.28
2eqj_A	66	Metal-response element-binding transcription facto	95.2
1ssf_A	156	Transformation related protein 53 binding protein	95.14
2eqk_A	85	Tudor domain-containing protein 4; structural geno	92.53
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	90.87
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	90.55
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	90.37
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	89.38
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	86.91
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	84.54
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	84.26
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	83.36
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	81.44

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A

Probab=99.92  E-value=1e-25  Score=189.52  Aligned_cols=74  Identities=28%  Similarity=0.435  Sum_probs=70.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHHhc
Q 015911            2 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS   76 (398)
Q Consensus         2 ~~d~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~~g   76 (398)
                      ..|++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||+|+.+.
T Consensus        15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~   88 (102)
T 1uz3_A           15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP   88 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence            368999999999999999999999996 59999999999999999999999999999999999999999998765

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1

Probab=99.90  E-value=2.6e-24  Score=188.09  Aligned_cols=72  Identities=29%  Similarity=0.443  Sum_probs=68.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHH
Q 015911            2 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRK   74 (398)
Q Consensus         2 ~~d~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~   74 (398)
                      ..|++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||+++.
T Consensus         7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~   78 (133)
T 2fmm_E            7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMS   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            368999999999999999999999996 599999999999999999999999999999999999999999874

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=0.00033  Score=55.66  Aligned_cols=54  Identities=20%  Similarity=0.415  Sum_probs=46.3

Q ss_pred             cCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911          180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  236 (398)
Q Consensus       180 ~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP  236 (398)
                      ..--||-+|..+|. |+.||+|+|+..+.. +...++|++. -.|+-...+|+-|++
T Consensus         8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~   61 (74)
T 2equ_A            8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPE   61 (74)
T ss_dssp             CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCG
T ss_pred             CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCCh
Confidence            45678999999999 999999999999875 8899999999 667777888877755

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=97.05  E-value=0.00041  Score=54.54  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      ||-.|.-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus        12 vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e   51 (66)
T 2l8d_A           12 DGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL   51 (66)
T ss_dssp             SSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            6779999999999999999999999999999999998775

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=97.02  E-value=0.00042  Score=54.75  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      ||-.|.-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus        15 vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e   54 (68)
T 2dig_A           15 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   54 (68)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             cCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            6779999999999999999999999999999999997775

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=96.72  E-value=0.0016  Score=48.59  Aligned_cols=54  Identities=24%  Similarity=0.297  Sum_probs=42.3

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  237 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe  237 (398)
                      +|-.+..+|.+|+.||.|+|++.+...+...+.|.+---.|+-..-+|+.+++|
T Consensus         6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~   59 (59)
T 1mhn_A            6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE   59 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence            577899999999999999999998877889999977444455555566666553

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=96.51  E-value=0.0036  Score=47.58  Aligned_cols=54  Identities=30%  Similarity=0.427  Sum_probs=41.9

Q ss_pred             ccCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccc
Q 015911          179 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK  232 (398)
Q Consensus       179 ~~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~  232 (398)
                      ....-+|-.+..+|.+|+.||.|+|+..+...+...++|.+---.|+=.+-+|+
T Consensus         6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr   59 (64)
T 4a4f_A            6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK   59 (64)
T ss_dssp             SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence            346678999999999999999999999998888889999775444443333333

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=96.26  E-value=0.0038  Score=49.02  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=35.8

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      .=.||-+|..+| .|+.||+|+|+..+.. +.+.++|+.++.+
T Consensus         6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~e   46 (67)
T 3p8d_A            6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ   46 (67)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred             ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceE
Confidence            335889999999 9999999999999988 7899999996653

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=96.18  E-value=0.005  Score=50.23  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccC
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  234 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ei  234 (398)
                      ..-||-.|..+|.+|+.||.|+|+..+...+...|+|.+---.|+-..-+|+-+
T Consensus        10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~   63 (88)
T 1g5v_A           10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP   63 (88)
T ss_dssp             CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence            456788999999999999999999999877889999976555555444455444

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=96.12  E-value=0.0023  Score=55.60  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=37.9

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      .++||.+|..+|+++..||-++|+.+ ...+++.|.+|++...
T Consensus         4 ~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~   45 (123)
T 2g3r_A            4 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   45 (123)
T ss_dssp             -CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred             ccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence            68999999999998889999999984 8889999999999984

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=95.05  E-value=0.001  Score=54.00  Aligned_cols=49  Identities=24%  Similarity=0.456  Sum_probs=37.4

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccC
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  234 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ei  234 (398)
                      -+|-+|..+|. |+.||.|+|+..+. .+.+.++|++++ .|+-.+-+|+-+
T Consensus         8 kvGd~clAkws-Dg~wY~A~I~~v~~-~~~y~V~F~DGn-~E~V~~s~LrPl   56 (81)
T 2ldm_A            8 QINEQVLASWS-DSRFYPAKVTAVNK-DGTYTVKFYDGV-VQTVKHIHVKAF   56 (81)
Confidence            36889999999 99999999999985 468999998854 344444444444

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=96.01  E-value=0.0056  Score=50.20  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=36.6

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      .=.||-+|..+| .|..||.|.|+..+.. +.+.+.|+.++.+
T Consensus        21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~e   61 (85)
T 3qii_A           21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ   61 (85)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred             ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeE
Confidence            557899999999 9999999999999987 7899999996653

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=96.00  E-value=0.014  Score=46.11  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  237 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe  237 (398)
                      ..-+|..+..+|.+|+.||.|+|+..+...+...|+|-+---.|+-..-+|+.|+++
T Consensus         9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A            9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   65 (78)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence            567888999999999999999999998877888888876555566667788888765

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=95.67  E-value=0.0097  Score=47.09  Aligned_cols=57  Identities=21%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  237 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe  237 (398)
                      ..-+|-.+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-||+.|+++
T Consensus        17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE   73 (77)
T ss_dssp             TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence            356788999999999999999999999877888888876555666667777777665

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=95.28  E-value=0.017  Score=42.13  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecC-CCC
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  222 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~-~t~  222 (398)
                      +|-.+..+|.+|+.||.|+|+..+...+...+.|.+ ++.
T Consensus         4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~   43 (54)
T 3s6w_A            4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY   43 (54)
T ss_dssp             TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence            577888999999999999999999877788888865 444

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=95.20  E-value=0.011  Score=46.60  Aligned_cols=49  Identities=27%  Similarity=0.519  Sum_probs=43.2

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  236 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP  236 (398)
                      -+|.-|..+| .|.-||+|+|+.-|..+|.-.|.|.+++.-    ||..++|.+
T Consensus        15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~   63 (66)
T 2eqj_A           15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT   63 (66)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred             cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence            4788899999 999999999999999999999999999885    777776644

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=95.14  E-value=0.015  Score=52.26  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=38.4

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      +++||.||..+|.+++.||-|+|+.+ ...+++.+.+|++...
T Consensus         8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k   49 (156)
T 1ssf_A            8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   49 (156)
T ss_dssp             CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred             cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence            67999999999999999999999996 6778899999999985

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.53  E-value=0.091  Score=43.06  Aligned_cols=58  Identities=10%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             ccCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911          179 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  237 (398)
Q Consensus       179 ~~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe  237 (398)
                      .+..-+|.-|..+.+++|.||-|.|..-.+.+--|-+.||.|+.+ +-.+-+|+.++|.
T Consensus        19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~   76 (85)
T 2eqk_A           19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN   76 (85)
T ss_dssp             CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred             ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence            446677888899999999999999999999999999999999984 4445566666543

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=90.87  E-value=0.68  Score=37.74  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=39.1

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE  237 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisPe  237 (398)
                      ..-+|.-+-.+|.+|+.||.|+|+..+.. +.-.+.| |.++. |+-.+-||+.+.++
T Consensus        32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~-e~v~~~~Lr~l~~~   87 (110)
T 2diq_A           32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDN-GDCPLKDLRALRSD   87 (110)
T ss_dssp             CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCE-EEECGGGCEECCHH
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCe-EEEehHHhhcCcHH
Confidence            44678888999999999999999999874 4444555 44444 44555666666553

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=90.55  E-value=0.9  Score=36.82  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=43.1

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  236 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP  236 (398)
                      .=-+|.-|-.+| .|.-||-|+|+.-|...+...|.|++++.-    |+..++|.+
T Consensus        26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~   76 (79)
T 2m0o_A           26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   76 (79)
T ss_dssp             CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred             eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence            335788889999 567999999999999999999999999986    887777754

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=90.37  E-value=0.31  Score=38.64  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCC
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP  236 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisP  236 (398)
                      ..-+|.-+-.+|++|+.||.|.|+.... ++.-.+.| |.|+. |+-..-||+.+.+
T Consensus        27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~-e~v~~~~lr~l~~   81 (94)
T 3fdr_A           27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDN-GDCPLKDLRALRS   81 (94)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCE-EEECGGGCEECCG
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCe-EEEEHHHhhhcCH
Confidence            4568888999999999999999999975 34455555 44444 4444555666654

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=89.38  E-value=0.26  Score=37.98  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  236 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP  236 (398)
                      -+|..|-.+|-| .-||-|+|..-|...+...+.+++++.-    |+-+++|.+
T Consensus         5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~   53 (58)
T 4hcz_A            5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   53 (58)
T ss_dssp             CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred             ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence            357789999976 8999999999999999999999999985    776666643

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.91  E-value=1.1  Score=36.46  Aligned_cols=64  Identities=14%  Similarity=0.115  Sum_probs=48.5

Q ss_pred             CccccceeecccC---CCCCceeeEeeecCCCC--CceeeeecCCCCccchhhhccccCCCcCccccCCC
Q 015911          181 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPEDIKWEGDE  245 (398)
Q Consensus       181 ~~LIGrkV~~~WP---dDn~~yEa~ItdYn~~t--g~H~LvYD~~t~~EtwEWVdL~eisPedI~W~~e~  245 (398)
                      .--||-||..+++   .++.||+|.|.+-+...  -++-|-|.--+.. -.|||....|.-..++|...+
T Consensus         9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~~~~~~~p~~~   77 (87)
T 2eko_A            9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRR-LDEWVTHERLDLKKIQFPKKE   77 (87)
T ss_dssp             SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSC-CCEEECTTTBCGGGCCCCCCS
T ss_pred             cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcc-cccccCHhHcccccccCCCCC
Confidence            4568999999997   58899999999887654  3577777665553 357999988877777776533

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.54  E-value=0.88  Score=35.52  Aligned_cols=51  Identities=24%  Similarity=0.449  Sum_probs=41.2

Q ss_pred             cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCcC
Q 015911          183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED  238 (398)
Q Consensus       183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPed  238 (398)
                      -+|.-|-.+|- |.-||=|+|+.-|...+.-.+.|.+++.-    ||..++|.+-.
T Consensus         9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~~   59 (63)
T 2e5q_A            9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHAG   59 (63)
T ss_dssp             CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECCS
T ss_pred             ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeecccccC
Confidence            46778889995 57999999999999888888888988875    77777765433

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=84.26  E-value=0.93  Score=39.86  Aligned_cols=54  Identities=24%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE  237 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisPe  237 (398)
                      ..-+|..+-.+|.+|+.||.|.|+....  +.-.+.| |.|+. |+..+-+|+.++++
T Consensus        51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~-~~v~~~~l~~l~~~  105 (218)
T 2wac_A           51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNK-ETLPTNRLAALPPA  105 (218)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCE-EEEEGGGEEECCGG
T ss_pred             cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCe-EEEchHHcccCChh
Confidence            3457888999999999999999999876  5555665 44554 45666677777654

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=83.36  E-value=0.51  Score=41.21  Aligned_cols=51  Identities=18%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             ccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCC
Q 015911          182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP  236 (398)
Q Consensus       182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisP  236 (398)
                      .-+|.-+-.+|++|+.||.|.|+...+.. .-.+.| |.|+.+.   .-+|+.+++
T Consensus        48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~---v~~lr~l~~   99 (169)
T 3ntk_A           48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV---TQQFRQLPE   99 (169)
T ss_dssp             CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE---ESCEECCCH
T ss_pred             CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE---hhhhhccCH
Confidence            34677888999999999999999998854 445555 6666654   346666643

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=81.44  E-value=2.7  Score=33.36  Aligned_cols=40  Identities=15%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      .=-+|..|-.+|-| .-||-|+|++-  .++.-.|.|++++.-
T Consensus        15 ~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~   54 (69)
T 2xk0_A           15 TYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ   54 (69)
T ss_dssp             CCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE
T ss_pred             ccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce
Confidence            44578889999966 89999999774  467778888999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1uz3a1	90	a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [T	8e-27
d1mhna_	59	b.34.9.1 (A:) Survival motor neuron protein 1, smn	7e-04
d2diqa1	97	b.34.9.1 (A:8-104) Tudor and KH domain-containing	0.002
d2d9ta1	60	b.34.9.1 (A:8-67) Tudor domain-containing protein	0.002

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 8e-27
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 3  NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNA 62
          ++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +   
Sbjct: 4  DECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVN 62

Query: 63 DDIILRIREWRKASG 77
          D+ +  I        
Sbjct: 63 DERLTTIAHNMSGPN 77

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237
           +G K    W ED   Y A I   +       +VY      E     +L     E
Sbjct: 6   VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 175 SEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 234
           S        +G  V    P +  +Y A +     N G   L +     +      +L+ +
Sbjct: 19  SVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRAL 77

Query: 235 SPE 237
             +
Sbjct: 78  RSD 80

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 187 KVW-------TRWPEDNHFYEAVITDYNPNEGRHALVYDI---NTADETWEWVNLKEISP 236
           KVW         + EDN FY A +   +   G  A+V      N   E     N+K +  
Sbjct: 1   KVWKPGDECFALYWEDNKFYRAEVEALHS-SGMTAVVKFTDYGNY--EEVLLSNIKPVQT 57

Query: 237 E 237
           E
Sbjct: 58  E 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1uz3a1	90	Emsy {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.09
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	96.01
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	95.9
d2g3ra1	53	p53-binding protein 1, 53BP1 {Human (Homo sapiens)	90.77
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	87.5
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	87.27

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-24  Score=177.36  Aligned_cols=73  Identities=30%  Similarity=0.457  Sum_probs=69.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHHhc
Q 015911            3 NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS   76 (398)
Q Consensus         3 ~d~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~~g   76 (398)
                      .+....||+||++||++||+||+||++ |||+|+.|||+||++|+||||||+++|+++.+|+.|++||++.++.
T Consensus         4 ~e~~~~lR~LEleAY~svl~Af~Aqg~-lsweke~lLt~LR~~L~IS~eeHr~elrr~~~De~l~~I~e~~~G~   76 (90)
T d1uz3a1           4 DECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP   76 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhccHHHHHHHHHHhcCC
Confidence            567889999999999999999999964 9999999999999999999999999999999999999999988765

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.003  Score=45.59  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=39.6

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  237 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe  237 (398)
                      ||-.+..+|++|+.||.|+|+..++..+...+.|.+---.|+=.=-+|+.|++|
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l~~e   58 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   58 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHHHcCcCCCC
Confidence            677888999999999999999999988888888866444433333344445443

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0023  Score=46.67  Aligned_cols=41  Identities=27%  Similarity=0.397  Sum_probs=38.1

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCcc
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADE  224 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~E  224 (398)
                      .|.-|+.|||-.+=|||-.|..||..+.++.+.|.++|+-|
T Consensus         8 ~Ge~vm~RwPgSsLyyev~vls~d~~~~~YtV~ykDGTele   48 (55)
T d2diga1           8 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELE   48 (55)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCcEEEeecCCCceEEEEEEEeecCcceEEEEEecCCceee
Confidence            56688999999999999999999999999999999999853

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0042  Score=44.88  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCC
Q 015911          184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS  235 (398)
Q Consensus       184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eis  235 (398)
                      ||-.+..+|.+|+.||.|+|+..++.++.-.+.|-+---.|+=..-||+.+.
T Consensus         6 vG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~~   57 (59)
T d1mhna_           6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPI   57 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHHHCcCCC
Confidence            7888999999999999999999988877777777665444444444444443

>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: p53-binding protein 1, 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.079  Score=37.70  Aligned_cols=41  Identities=24%  Similarity=0.541  Sum_probs=36.9

Q ss_pred             ccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911          182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  223 (398)
Q Consensus       182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~  223 (398)
                      ++||-+|-..|....-||.+.||. |...|+..|.+|++-+-
T Consensus         1 sfvglrvvakwssn~yfysg~i~r-d~g~~r~rl~fdd~~ec   41 (53)
T d2g3ra1           1 SFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYEC   41 (53)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEE
T ss_pred             CceeEEEEEEeecCCEEEeeEEeh-hcCCceEEEEecCCcEE
Confidence            478999999999999999999997 67789999999999774

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=0.26  Score=37.35  Aligned_cols=56  Identities=20%  Similarity=0.352  Sum_probs=36.9

Q ss_pred             cCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911          180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  237 (398)
Q Consensus       180 ~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe  237 (398)
                      +.+-+|--+-.+|. ||.||.|.|+..+....-.....|.|+.+ +=.+-||+.+.++
T Consensus        24 ~~p~~G~~c~a~~~-D~~wyRa~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~   79 (90)
T d2hqxa1          24 YAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNRE-VLPSTRLGTLSPA   79 (90)
T ss_dssp             CCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETTTCCEE-EECGGGEECCCGG
T ss_pred             cCCCCCCEEEEEEc-CCCEEEEEEEEeCCCCeEEEEEEeCCCCE-EEEHHHeeECCHH
Confidence            34567888899994 89999999999875433333334777664 3344455666543

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.27  E-value=0.23  Score=37.18  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=35.0

Q ss_pred             ccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCC
Q 015911          182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS  235 (398)
Q Consensus       182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eis  235 (398)
                      .-+|..+-.+|++|+.||.|+|+..+....-.....|.|+. ++-..-+|+.+.
T Consensus        26 ~~~G~~~~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~-~~v~~~~l~~l~   78 (97)
T d2diqa1          26 VHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDN-GDCPLKDLRALR   78 (97)
T ss_dssp             CCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCE-EEECGGGCEECC
T ss_pred             CCCCCEEEEEECCCCeEEEEEEEEECCCCEEEEEEEeeCCE-EEEeHHHhhccC
Confidence            45788889999999999999999997643333333466654 333344444443