Citrus Sinensis ID: 015915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLFK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEccccccEEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEcccccccccccccccEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEHHHHHHHEccEEEEcEEEEEEEEEEEEEccccccHEEEEEEEEccccccEcEEEEEccccHcccccHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEHHHcccccccEEEEEEcccccccccccccccEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIkilgslnrddlkkicgdnfpvwisfPVYEQVKWLNKELSKLWPFVADAAELVIKESVeplleeyrppgitslkfsklslgnvapkiegIRVQslkqgqitmdidfrwggdpsiILGVEAAMVASipiqlkdlQVFTVIRVIFQLAEEIPCISAVVVALlsepkpridYTLKAvggsltaipgiadmiDDTVDSIITDmlqwphrivvpiggipvdtselelkpqgkVAVTIVKANNlknmemigksdpyavvhikplfkvktnvvdnnlnpvWNQTFELIAEDKETQSLIFEVFdkdigqdkrlgivklplidleadtpkeaelrllpsldmlkikdkkdrgsitvkvgaskhsfnlfk
Flexible Loop (DISEMBL)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTselelkpqgkVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVktnvvdnnlNPVWNQTFELIAEDKETQSLIFEvfdkdigqdkrlGIVKlplidleadtpkeaelrllpsldmlkikdkkdrgsitvkvgaskhsfnlfk
Low Complexity Region (SEG)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLFK
Disordered region (IsUnstruct)
**LISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEAD******LRLL********************************
Disordered Region (DISOPRED)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKK*C**NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLL***************SITVKVGASKHSFNLF*
Disordered Region (DISEMBL)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLFK
Disordered Region (DISPRO)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKI**KKDRGSITVKVGASKHSFNLFK
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.977	0.683	0.4	6e-80
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.957	0.680	0.395	3e-79
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.798	0.588	0.352	2e-50
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.947	0.702	0.303	3e-46
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.766	0.563	0.302	4e-41
A0FGR9	886	Extended synaptotagmin-3	yes	no	0.826	0.371	0.287	2e-32
Q5DTI8	891	Extended synaptotagmin-3	yes	no	0.826	0.369	0.293	2e-32
Q3U7R1	1092	Extended synaptotagmin-1	no	no	0.824	0.300	0.299	3e-31
Q3TZZ7	845	Extended synaptotagmin-2	no	no	0.846	0.398	0.258	4e-31
Q9Z1X1	1088	Extended synaptotagmin-1	no	no	0.824	0.301	0.299	2e-30

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  298 bits (762), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 164/410 (40%), Positives = 250/410 (60%), Gaps = 21/410 (5%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKIC-GDNFP 59
           MG + G+F+G+     L+  +      RST+R   A  I     +   D +K+  GD +P
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 60  VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
            W+ F   +++ WLN EL K+WP+V +AA  +IK SVEP+LE+Y P  + SLKFSK +LG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 120 NVAPKIEGIRVQSLKQG--QITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVI 177
            VAP+  G+ +   + G   ITM+++ +W G+P I+L V+  +  S+PI++K++    V 
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 178 RVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITD 236
           R+IF+ L +E PC  A+  +L    K  +D+TLK +GG LT+IPGI+D I++T+   I D
Sbjct: 181 RLIFKPLVDEFPCFGALSYSL--REKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIED 238

Query: 237 MLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL 296
            + WP R ++PI  +P D S+LELKP GK+ V +V+A +L N +MIGKSDPYA+V I+PL
Sbjct: 239 SITWPVRKIIPI--LPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPL 296

Query: 297 --FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL 353
                KT  + N+LNP+WN+ FE I ED  TQ L   VFD + +G  + +G  ++PL +L
Sbjct: 297 PDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNEL 356

Query: 354 EADTPKEAELRLLPSLDMLKIKDKKDRGSITV--------KVGASKHSFN 395
                K+  L+L+  L++   +D K+RG + +        K G  K+ FN
Sbjct: 357 VPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFN 404

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  295 bits (756), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/392 (39%), Positives = 251/392 (64%), Gaps = 11/392 (2%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF-P 59
           MG I GV +G++ GIA++ G+  +   RS  R   A  +     +  +D +K+    F P
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 60  VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
            W+ F   +++ WLN  L+K+WP+V +AA  +IK SVEP+LE+YRP  + SL FSKL+LG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 120 NVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRV 179
            VAP+  G+ V    +  IT+++D +W G+P+I+LGV+  +  S+PIQ+K++    V R+
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 180 IFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDML 238
           IF+ L E+ PC  AV V+L    K ++D+TLK VGG ++AIPG+++ I++T+   + D +
Sbjct: 181 IFRPLVEDFPCFGAVSVSL--REKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query: 239 QWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK 298
            WP R V+PI  IP D S+LELKP G + V +V+A NL N +++GKSDP+A + I+PL +
Sbjct: 239 TWPVRKVIPI--IPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLRE 296

Query: 299 --VKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRL-GIVKLPLIDLEA 355
              ++  ++N+LNP+WN+ FE + ED  TQ L+  ++D +  Q   L G  ++ L +LE 
Sbjct: 297 KTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEP 356

Query: 356 DTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
              K+  L+L+  L++   +D K+RG + +++
Sbjct: 357 GKVKDVWLKLVKDLEIQ--RDTKNRGEVHLEL 386

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 188/332 (56%), Gaps = 14/332 (4%)

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEY-RPPGITSLKFSKLSLG 119
           W+  P YE+V W NK +S +WP++  A   +I+ SV+PL  +Y     I S++F  LSLG
Sbjct: 62  WMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLG 121

Query: 120 NVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRV 179
            + P + G++     + ++  +   +W G+P+I+L V   +   I +QL DLQ F ++RV
Sbjct: 122 TLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVL-VLKVLSLRIRVQLVDLQFFAIVRV 180

Query: 180 IFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDML 238
             + L    PC   VVV+L+   KP +D+ LK +GG L +IPG+   + +T+   ++ M 
Sbjct: 181 ALKPLLPTFPCFGMVVVSLME--KPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMY 238

Query: 239 QWPHRIVVPIGGIPVDTSELEL-KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KP 295
            WP  + +PI    +D+S   + KP G + V+I++A NL   +++G SDPY  + +  + 
Sbjct: 239 HWPQVLEIPI----LDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEK 294

Query: 296 LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLE 354
           L   KT +   NLNP WN+ F+LI +D  +Q L  EVFD D +G   RLG+  +PL  + 
Sbjct: 295 LPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKIN 354

Query: 355 ADTPKEAELRLLPSLD-MLKIKDKKDRGSITV 385
               KE  L L+ + + ++   DKK RG + V
Sbjct: 355 PGERKEFNLDLIKNSNVVMDSGDKKKRGRLEV 386

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 221/396 (55%), Gaps = 19/396 (4%)

Query: 1   MGLISGVF--MGMIFG--IALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGD 56
           MG+IS +   +G  FG  I ++ G+   + ++ST    +  +IK L  L+ + +  +  +
Sbjct: 1   MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFPE 58

Query: 57  NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSK 115
             P+W+  P ++++ WLNK +  +WP++  A   + K   +P++ E  P   I S++F  
Sbjct: 59  -IPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117

Query: 116 LSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
           L+LG++ P  +G++V +    +I M++  +W G+P+II+ V  A      +Q+ DLQV+ 
Sbjct: 118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIV-VAKAFGLKATVQVIDLQVYA 176

Query: 176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
             R+  + L    PC + + V+L+   KP++D+ LK +G  + AIPG+   + + +   +
Sbjct: 177 TPRITLKPLVPSFPCFANIFVSLMD--KPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQV 234

Query: 235 TDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK 294
            +M  WP  + V I    +D S+   KP G ++V ++KA  LK  +++G SDPY  + + 
Sbjct: 235 ANMYLWPKTLNVQI----MDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLS 290

Query: 295 --PLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFD-KDIGQDKRLGIVKLPLI 351
              +   KT V  +NLNP WN+ F+L+ ++ E+Q L   V+D + +G+  ++G+  + L 
Sbjct: 291 GDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLK 350

Query: 352 DLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
           DL  + PK   L LL S++  +   +K RG + V+V
Sbjct: 351 DLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVVEV 386

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  169 bits (427), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 176/317 (55%), Gaps = 12/317 (3%)

Query: 59  PVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSKLS 117
           P+W+  P +++V W+N+ L  +WP++  A     K   +P++EE  P   I S++F  L+
Sbjct: 60  PLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLT 119

Query: 118 LGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVI 177
           LG++ P  +G++V    + ++ M+   +W  +P+I++ ++A  + +  +Q+ DLQVF   
Sbjct: 120 LGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKAT-VQVVDLQVFAQP 178

Query: 178 RVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITD 236
           R+  + L    PC + + V+L+   KP +D+ LK  G  L +IPG+   + + +   + +
Sbjct: 179 RITLKPLVPSFPCFANIYVSLME--KPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVAN 236

Query: 237 MLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP- 295
           M  WP  +VVPI    +D ++   +P G V V +V+A  L+  +++G +DP+  + +   
Sbjct: 237 MYLWPKTLVVPI----LDPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSED 292

Query: 296 -LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFD-KDIGQDKRLGIVKLPLIDL 353
            +   KT V   NLNP WN+ F+    D +TQ L F V+D + +G  +++G+  L L ++
Sbjct: 293 KIPSKKTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEM 352

Query: 354 EADTPKEAELRLLPSLD 370
             D  K   L L  +LD
Sbjct: 353 VPDEHKAFTLELRKTLD 369

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 177/351 (50%), Gaps = 22/351 (6%)

Query: 11  MIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQV 70
           ++ G  L   WR   R R  K    AA  + L +      +++ G + P WI FP  E+V
Sbjct: 62  LLLGALLWMWWR---RNRRGKLGRLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERV 118

Query: 71  KWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRV 130
           +W NK +S+ WP+++   E   +E +EP + E +   + +  F+KL  G   P++ G++ 
Sbjct: 119 EWANKIISQTWPYLSMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKA 177

Query: 131 Q--SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQ-LAEEI 187
              +  + ++T+D+   + GD  I + ++        IQL+       +RVI + L  + 
Sbjct: 178 HTNTCNRRRVTVDLQICYIGDCEISVELQKIQAGVNGIQLQG-----TLRVILEPLLVDK 232

Query: 188 PCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVP 247
           P + AV V  L +P  +I++T      +L   PGI D+ D  ++ +I   L  P+R+ VP
Sbjct: 233 PFVGAVTVFFLQKPHLQINWTGLT---NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVP 289

Query: 248 I-GGIPVDTSELELKPQGKVAVTIVKANNLKNME----MIGKSDPYAVVHIKPLFKVKTN 302
           +  G+ +      L P G + V +++A  L   +    + GKSDPYA V I  L   ++ 
Sbjct: 290 VKKGLDLTNLRFPL-PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIG-LQHFRSR 347

Query: 303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDL 353
            +  NLNP WN+ FE +  +   Q L  +++D+D  +D  LG +++ L D+
Sbjct: 348 TIYRNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDV 398

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 180/351 (51%), Gaps = 22/351 (6%)

Query: 11  MIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQV 70
           ++ G  L   WR   R R  K     A  + L        +++ G + P WI FP  E+V
Sbjct: 66  LLLGALLWMWWR---RNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERV 122

Query: 71  KWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRV 130
           +W NK + ++WP+++   E  I+E +EP + E +   + +  F+KL  G   PK+ G++V
Sbjct: 123 EWANKIIIQIWPYLSMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKV 181

Query: 131 QSLKQGQ--ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQ-LAEEI 187
            + K+ +  +T+D+   + GD  I + ++        +QL+       +RVI + L  + 
Sbjct: 182 HTDKRNRRKVTLDLQICYIGDCEISVELQKIRGGVSGVQLQG-----TLRVILEPLLVDK 236

Query: 188 PCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVP 247
           P I AV V  L +P  +I++T      +L  +PGI ++ D  ++ +I   L  P+R+ VP
Sbjct: 237 PFIGAVTVFFLQKPHLQINWTGLT---NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVP 293

Query: 248 I-GGIPVDTSELELKPQGKVAVTIVKANNLKN----MEMIGKSDPYAVVHIKPLFKVKTN 302
           +  G+ V    + L P G + V +++A  L      + + GKSDPYA V I  L   ++ 
Sbjct: 294 VKKGLDVTNLRVPL-PCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG-LQHCRSR 351

Query: 303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDL 353
            +  NLNP WN+ FE +  +   Q L  +++D+D  +D  LG +++ L D+
Sbjct: 352 TIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDKDDFLGSLQICLGDV 402

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 189/361 (52%), Gaps = 33/361 (9%)

Query: 5   SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF----- 58
           +G+ +G + FG+AL  GWR   R R  K  +  A  ++L     DD ++I  +       
Sbjct: 64  AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLL-----DDEERITAETLYMSHR 115

Query: 59  --PVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKL 116
             P W+SFP  E+ +WLNK ++++WPF+    E ++ E+V P +     P + +  F+++
Sbjct: 116 ELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGAN-PHLQTFTFTRV 174

Query: 117 SLGNVAPKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
            LG    +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  
Sbjct: 175 ELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKA---GVKGMQLHG 231

Query: 176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
           V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I
Sbjct: 232 VLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSI 288

Query: 235 TDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDP 287
              L  P+R++VP+     D ++L    P+G + + ++ A  L + +        GKSDP
Sbjct: 289 AAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDP 348

Query: 288 YAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVK 347
           YA+V +       + V+D  LNP W +T+E+I  +   Q +  EVFDKD  +D  LG +K
Sbjct: 349 YALVRVG-TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFLGRMK 407

Query: 348 L 348
           L
Sbjct: 408 L 408

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 187/364 (51%), Gaps = 27/364 (7%)

Query: 8   FMGMIFGIALMA----GWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWIS 63
           ++G+ F   L+A     W    R     R+ +A  + +L    +     +   + P W+ 
Sbjct: 55  YLGLSFSWVLLALGLLAWCRRSRGLKASRLCRA--LALLEDEEQAVRLGVRACDLPAWVH 112

Query: 64  FPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAP 123
           FP  E+ +WLNK +  +WPF+    E + +E++EP +       +++  F+K+ +G    
Sbjct: 113 FPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGAN-AHLSTFSFTKVDVGQQPL 171

Query: 124 KIEGIRV--QSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIF 181
           ++ G++V  +++ + QI +D+   + G+  I L ++     +    +K +Q+   +RVI 
Sbjct: 172 RVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRA---GVKSIQIHGTMRVIL 228

Query: 182 Q-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           + L  ++P + A+ +  L +P   I++T      +L  IPG+  + D  +  II++ L  
Sbjct: 229 EPLIGDMPLVGALSIFFLRKPLLEINWTGLT---NLLDIPGLNGLSDTIILDIISNYLVL 285

Query: 241 PHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHI 293
           P+RI VP+    V  ++L    P+G + +  ++A +L+  +        GKSDPY ++ +
Sbjct: 286 PNRITVPLVS-EVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRV 344

Query: 294 -KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLID 352
              +F+ K  V+  NL+P WN+ +E +  +   Q L  E+FD+D  +D  LG + + LI+
Sbjct: 345 GNQIFQSK--VIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPDKDDFLGSLMIDLIE 402

Query: 353 LEAD 356
           +E +
Sbjct: 403 VEKE 406

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 188/361 (52%), Gaps = 33/361 (9%)

Query: 5   SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF----- 58
           +G+ +G + FG+AL  GWR   R R  K  +  A  ++L     DD ++I  +       
Sbjct: 66  AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLL-----DDEERITAETLYMSHR 117

Query: 59  --PVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKL 116
             P W+SFP  E+ +WLNK + ++WPF+    E ++ E+V P +     P + +  F+++
Sbjct: 118 ELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGAN-PHLQTFTFTRV 176

Query: 117 SLGNVAPKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
            LG    +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  
Sbjct: 177 ELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHG 233

Query: 176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
           V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I
Sbjct: 234 VLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSI 290

Query: 235 TDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDP 287
              L  P+R++VP+     D ++L    P+G + + ++ A  L + +        GKSDP
Sbjct: 291 AAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDP 350

Query: 288 YAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVK 347
           YA+V +       + V+D  LNP W +T+E+I  +   Q +  EVFDKD  +D  LG +K
Sbjct: 351 YALVRVG-TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFLGRMK 409

Query: 348 L 348
           L
Sbjct: 410 L 410

May play a role as calcium-regulated intrinsic membrane protein.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
225453818	513	PREDICTED: tricalbin-1 [Vitis vinifera]	0.987	0.766	0.868	0.0
356505439	535	PREDICTED: extended synaptotagmin-2-like	0.987	0.734	0.850	0.0
356520501	524	PREDICTED: extended synaptotagmin-2-like	0.987	0.75	0.848	0.0
255541372	515	calcium lipid binding protein, putative	0.987	0.763	0.840	0.0
449454506	507	PREDICTED: synaptotagmin-5-like [Cucumis	0.987	0.775	0.817	0.0
296089108	428	unnamed protein product [Vitis vinifera]	0.944	0.878	0.870	0.0
449498883	507	PREDICTED: LOW QUALITY PROTEIN: synaptot	0.987	0.775	0.815	0.0
224127446	500	integral membrane single C2 domain prote	0.987	0.786	0.817	0.0
356532074	535	PREDICTED: extended synaptotagmin-2-like	0.984	0.732	0.822	0.0
356568302	512	PREDICTED: extended synaptotagmin-2-like	0.984	0.765	0.822	0.0

>gi|225453818|ref|XP_002276807.1| PREDICTED: tricalbin-1 [Vitis vinifera]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/395 (86%), Positives = 370/395 (93%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+ MG IFGIALMAGW HMMRYRS KR+AKA DIK+LGSLNR+DLKKICGDNFP 
Sbjct: 1   MGLISGILMGTIFGIALMAGWVHMMRYRSIKRVAKAVDIKLLGSLNREDLKKICGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+L+KLWPFVADAA LVI+ESVEPLLE+YRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKQLTKLWPFVADAATLVIRESVEPLLEDYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSLK+GQI MDID RWGGDPSIIL VEAA+VASIPIQLKDLQVFTV RVI
Sbjct: 121 VAPKIEGIRVQSLKKGQIIMDIDLRWGGDPSIILAVEAALVASIPIQLKDLQVFTVARVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAV+VALLSEPKPRIDYTLKAVGGSLTA+PGI+DMIDDTV++IITDMLQW
Sbjct: 181 FQLAEEIPCISAVIVALLSEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIITDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVPIGG+PVDTSELELKPQGK+ +TIVKAN+LKNMEMIGKSDPY VVHI+PLFK+K
Sbjct: 241 PHRIVVPIGGMPVDTSELELKPQGKLTLTIVKANDLKNMEMIGKSDPYVVVHIRPLFKIK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T V++NNLNPVWNQTFELIAEDKETQSLI EV DKDI QDKRLGI KLPL DLEA+ PKE
Sbjct: 301 TKVIENNLNPVWNQTFELIAEDKETQSLILEVIDKDITQDKRLGIAKLPLNDLEAENPKE 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLLPSLDMLKIKDKKDRG+IT+KV    H+FN
Sbjct: 361 IELRLLPSLDMLKIKDKKDRGTITIKV--LYHAFN 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505439|ref|XP_003521498.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/395 (85%), Positives = 365/395 (92%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+FMG++FGIALMAGW  MMRYRS KRIAKAADIK+LGSLNRDDLKKICGDN P 
Sbjct: 1   MGLFSGIFMGVLFGIALMAGWARMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+L+KLWPFVA+AA LVI+ESVEPLLEEYRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFT++RVI
Sbjct: 121 VAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EPKPRIDYTLKAVGGSLTAIPGI+DMIDDTV+SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQGK+A+T+VKA  LKNMEMIGKSDPY VVHI+PLFK K
Sbjct: 241 PHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T V+DNNLNP+WN+ FELIAEDKETQSLI EV DKDIGQDKRLGI +LPLI LE  T KE
Sbjct: 301 TKVIDNNLNPIWNEKFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIGLEIQTEKE 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLLPSLD LK+KDKKDRG++TVKV    + FN
Sbjct: 361 IELRLLPSLDTLKVKDKKDRGTLTVKV--MYYQFN 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520501|ref|XP_003528900.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/395 (84%), Positives = 365/395 (92%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+FMG++FGIALMAGW  MM+YRS KRIAKAADIK+LGSLNRDDLKKICGDN P 
Sbjct: 1   MGLFSGIFMGVLFGIALMAGWARMMKYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+L+KLWPFVA+AA +VI+ESVEPLLEEYRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKKLTKLWPFVAEAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFT++RVI
Sbjct: 121 VAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EPKPRIDYTLKAVGGSLTAIPGI+DMIDDTV+SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQGK+A+T+VKA  LKNMEMIGKSDPY VVHI+PLFK K
Sbjct: 241 PHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T V+DNNLNP WN+ FELIAEDKETQSLI EV DKDIGQDKRLGI +LPLIDLE  T KE
Sbjct: 301 TKVIDNNLNPTWNEKFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIDLEIQTEKE 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLLPSLD LK+KDKKDRG++TVKV    + FN
Sbjct: 361 IELRLLPSLDTLKVKDKKDRGTLTVKV--MYYQFN 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541372|ref|XP_002511750.1| calcium lipid binding protein, putative [Ricinus communis] gi|223548930|gb|EEF50419.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/395 (84%), Positives = 373/395 (94%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMGMIFGIA+MAGW+HMMRYRSTKRIAKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLISGIFMGMIFGIAVMAGWKHMMRYRSTKRIAKAVDIKLLGSLNRDDLKKICGDNFPD 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPV+EQVKWLNK+LSKLWPFVADAA +V+KESVEPLLE+YRPPGITSLKF+K SLG 
Sbjct: 61  WISFPVFEQVKWLNKQLSKLWPFVADAATMVVKESVEPLLEDYRPPGITSLKFNKFSLGT 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           V PKIEGIRVQSLK+GQI MDIDFRWGGDPSIILGVEAA+VASIPIQLKDL+V+TVIRVI
Sbjct: 121 VPPKIEGIRVQSLKKGQIIMDIDFRWGGDPSIILGVEAALVASIPIQLKDLEVYTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVV+ALLSEPKP+IDY LKAVGGSLTAIPG++DMIDDTV SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVIALLSEPKPKIDYVLKAVGGSLTAIPGLSDMIDDTVHSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHR+VVPIGGIPVDTSELELKP+GK+ VT+VKAN+LKNMEMIGKSDPY V++I+P+FKVK
Sbjct: 241 PHRVVVPIGGIPVDTSELELKPEGKLTVTVVKANDLKNMEMIGKSDPYVVLYIRPMFKVK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           +  ++NNLNPVW+QTFE+IAEDKETQSLI EVFDKDIGQDKRLGI KLPLI+LEA+T K+
Sbjct: 301 SRTIENNLNPVWDQTFEMIAEDKETQSLILEVFDKDIGQDKRLGIAKLPLIELEAETWKQ 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLLP+LDMLKIKDKKD G++T+KV    H+FN
Sbjct: 361 HELRLLPALDMLKIKDKKDGGTLTIKV--LYHAFN 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454506|ref|XP_004144995.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449474835|ref|XP_004154298.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/395 (81%), Positives = 366/395 (92%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMG+IFGIALMAGW+HMMR+RSTKR+AKAAD+KILGSL+RDDLKK+CGDNFP 
Sbjct: 1   MGLISGIFMGVIFGIALMAGWQHMMRHRSTKRVAKAADMKILGSLSRDDLKKLCGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK LSK+WPFVADAAELVIKESVEPLLEEY+PPGITSLKFSKLSLG+
Sbjct: 61  WISFPVYEQVKWLNKLLSKMWPFVADAAELVIKESVEPLLEEYKPPGITSLKFSKLSLGS 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSLK+GQITMDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFTVIRVI
Sbjct: 121 VAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EP+P+I Y LKAVGGSLTAIPGI+DMIDDTV++I+TDML+W
Sbjct: 181 FQLAEEIPCISAVVVALLAEPEPKIVYNLKAVGGSLTAIPGISDMIDDTVNTIVTDMLKW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIV+ IGGIPVD SELELKPQG++ VT+VKANNLKNMEMIGKSDPY V H++PLFK+K
Sbjct: 241 PHRIVLQIGGIPVDISELELKPQGRLTVTVVKANNLKNMEMIGKSDPYVVAHVRPLFKLK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T  ++NNLNPVWN+  + I EDKETQS+IFEV+DKDIGQDK+LGI KLPLIDL+ +  KE
Sbjct: 301 TKTIENNLNPVWNEELDFIVEDKETQSIIFEVYDKDIGQDKQLGIAKLPLIDLQGEVNKE 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLL SL+ LK+KDKKDRG++T+ +    H FN
Sbjct: 361 VELRLLASLNTLKVKDKKDRGTLTIMI--HYHEFN 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089108|emb|CBI38811.3| unnamed protein product [Vitis vinifera]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/378 (87%), Positives = 355/378 (93%), Gaps = 2/378 (0%)

Query: 18  MAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKEL 77
           MAGW HMMRYRS KR+AKA DIK+LGSLNR+DLKKICGDNFP WISFPVYEQVKWLNK+L
Sbjct: 1   MAGWVHMMRYRSIKRVAKAVDIKLLGSLNREDLKKICGDNFPEWISFPVYEQVKWLNKQL 60

Query: 78  SKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQ 137
           +KLWPFVADAA LVI+ESVEPLLE+YRPPGITSLKFSKLSLGNVAPKIEGIRVQSLK+GQ
Sbjct: 61  TKLWPFVADAATLVIRESVEPLLEDYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQ 120

Query: 138 ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVAL 197
           I MDID RWGGDPSIIL VEAA+VASIPIQLKDLQVFTV RVIFQLAEEIPCISAV+VAL
Sbjct: 121 IIMDIDLRWGGDPSIILAVEAALVASIPIQLKDLQVFTVARVIFQLAEEIPCISAVIVAL 180

Query: 198 LSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSE 257
           LSEPKPRIDYTLKAVGGSLTA+PGI+DMIDDTV++IITDMLQWPHRIVVPIGG+PVDTSE
Sbjct: 181 LSEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIITDMLQWPHRIVVPIGGMPVDTSE 240

Query: 258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFE 317
           LELKPQGK+ +TIVKAN+LKNMEMIGKSDPY VVHI+PLFK+KT V++NNLNPVWNQTFE
Sbjct: 241 LELKPQGKLTLTIVKANDLKNMEMIGKSDPYVVVHIRPLFKIKTKVIENNLNPVWNQTFE 300

Query: 318 LIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDK 377
           LIAEDKETQSLI EV DKDI QDKRLGI KLPL DLEA+ PKE ELRLLPSLDMLKIKDK
Sbjct: 301 LIAEDKETQSLILEVIDKDITQDKRLGIAKLPLNDLEAENPKEIELRLLPSLDMLKIKDK 360

Query: 378 KDRGSITVKVGASKHSFN 395
           KDRG+IT+KV    H+FN
Sbjct: 361 KDRGTITIKV--LYHAFN 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498883|ref|XP_004160660.1| PREDICTED: LOW QUALITY PROTEIN: synaptotagmin-5-like [Cucumis sativus]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/395 (81%), Positives = 365/395 (92%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMG+IFGIALMAGW+HMMR+RSTKR+AKAAD+KILGSL+RDDLKK+CGDNFP 
Sbjct: 1   MGLISGIFMGVIFGIALMAGWQHMMRHRSTKRVAKAADMKILGSLSRDDLKKLCGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK LSK+WPFVADAAELVIKESVEPLLEEY+PPGITSLKFSKLSLG+
Sbjct: 61  WISFPVYEQVKWLNKLLSKMWPFVADAAELVIKESVEPLLEEYKPPGITSLKFSKLSLGS 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSLK+GQITMDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFTVIRVI
Sbjct: 121 VAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EP+P+I Y LKAVGGSLTAIPGI+DMIDDTV++I+TDML+W
Sbjct: 181 FQLAEEIPCISAVVVALLAEPEPKIVYNLKAVGGSLTAIPGISDMIDDTVNTIVTDMLKW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIV+ IGGIPVD SELELKPQG++ VT+VKANNLKNMEMIGKSDPY V H++PLFK+K
Sbjct: 241 PHRIVLQIGGIPVDISELELKPQGRLTVTVVKANNLKNMEMIGKSDPYVVAHVRPLFKLK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
              ++NNLNPVWN+  + I EDKETQS+IFEV+DKDIGQDK+LGI KLPLIDL+ +  KE
Sbjct: 301 XKTIENNLNPVWNEELDFIVEDKETQSIIFEVYDKDIGQDKQLGIAKLPLIDLQGEVNKE 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLL SL+ LK+KDKKDRG++T+ +    H FN
Sbjct: 361 VELRLLASLNTLKVKDKKDRGTLTIMI--HYHEFN 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127446|ref|XP_002320076.1| integral membrane single C2 domain protein [Populus trichocarpa] gi|222860849|gb|EEE98391.1| integral membrane single C2 domain protein [Populus trichocarpa]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/395 (81%), Positives = 364/395 (92%), Gaps = 2/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+F+G+IFGI LMAGW+HMM+YRSTKR+AKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLISGIFLGIIFGIGLMAGWKHMMQYRSTKRVAKAVDIKLLGSLNRDDLKKICGDNFPD 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFP +EQVKWLNK+L KLWPFVA+AA LV+KESVEPLLE+YRPPGITSLKF+K SLG 
Sbjct: 61  WISFPAFEQVKWLNKQLGKLWPFVAEAAALVVKESVEPLLEDYRPPGITSLKFNKFSLGT 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           V PKIEGIRVQSLKQG++TMDID RW GDPSIILGVEAA+VASIPIQLKDL+V+TVIRVI
Sbjct: 121 VPPKIEGIRVQSLKQGEVTMDIDLRWCGDPSIILGVEAALVASIPIQLKDLEVYTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           F LAEEIPCISA+V+ALL+EPKP+I+Y LKAVGGSL A+PG++DMIDDTV+SI+TDMLQW
Sbjct: 181 FHLAEEIPCISALVIALLAEPKPKIEYVLKAVGGSLAALPGVSDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQGK+ VT+VKAN+LKNMEMIGKSDPYAVV+I+P+FKVK
Sbjct: 241 PHRIVVPLGGIPVDTSELELKPQGKLTVTVVKANDLKNMEMIGKSDPYAVVYIRPMFKVK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T VVDNNLNPVWNQTF+LIAEDKETQSLI EVFDKDIGQDKRLG  KL L +LEA+T KE
Sbjct: 301 TQVVDNNLNPVWNQTFDLIAEDKETQSLILEVFDKDIGQDKRLGRAKLALNELEAETWKE 360

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLL S D LK+KDKKDRG+IT+KV    H FN
Sbjct: 361 VELRLLASFDTLKVKDKKDRGTITIKV--LYHEFN 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532074|ref|XP_003534599.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/395 (82%), Positives = 363/395 (91%), Gaps = 3/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+F+GM+ GIALMA W+ MM YRS KRIAKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLFSGIFLGMVLGIALMAAWQRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFP+YEQVKWLNK+LSKLWPFVADAA LVI+ESVEPLLEEYRP GI+SLKFSKLSLGN
Sbjct: 61  WISFPIYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPTGISSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDP+I+L VEA +VASIPIQLKDLQVFT+IRVI
Sbjct: 121 VAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEA-LVASIPIQLKDLQVFTIIRVI 179

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLA+EIPCISAVVVALL+EPKPRIDYTLKAVGGSLTA+PGI+DMIDD V+SI+TD LQW
Sbjct: 180 FQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNSIVTDTLQW 239

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQG + VT++KAN+LKNMEMIGKSDPYAV++I+PLFKVK
Sbjct: 240 PHRIVVPLGGIPVDTSELELKPQGTLRVTVIKANDLKNMEMIGKSDPYAVLYIRPLFKVK 299

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T V+DNNLNPVWN+ F+LIAEDKETQSLI EVFDKDIGQDKRLGIVKLPL D+E +T KE
Sbjct: 300 TKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDMEPETEKE 359

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELR+L SLD LK+KDKKDRG+IT+K+    H FN
Sbjct: 360 FELRMLSSLDTLKVKDKKDRGTITMKI--FYHQFN 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568302|ref|XP_003552351.1| PREDICTED: extended synaptotagmin-2-like isoform 1 [Glycine max]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/395 (82%), Positives = 362/395 (91%), Gaps = 3/395 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+F+GM+ GIALMA W+ MM YRS KRIAKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLFSGIFLGMVLGIALMAAWQRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+LSKLWPFVADAA LVI+ESVEP+LEEYRP GI+SLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPILEEYRPAGISSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDP+I+L VEA +VASIPIQLKDLQVFT+IRVI
Sbjct: 121 VAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEA-LVASIPIQLKDLQVFTIIRVI 179

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLA+EIPCISAVVVALL+EPKPRIDYTLKAVGGSLTA+PGI+DMIDD V++I+TD LQW
Sbjct: 180 FQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNTIVTDTLQW 239

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQG +  T++KAN+LKNMEMIGKSDPYAV++I+PLFKVK
Sbjct: 240 PHRIVVPLGGIPVDTSELELKPQGTLRATVIKANDLKNMEMIGKSDPYAVLYIRPLFKVK 299

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           T V+DNNLNPVWN+ F+LIAEDKETQSLI EVFDKDIGQDKRLGIVKLPL DLE +T KE
Sbjct: 300 TKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDLEPETEKE 359

Query: 361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
            ELRLL SLD LK+KDKKDRG+IT+K+    H FN
Sbjct: 360 FELRLLSSLDTLKVKDKKDRGTITIKI--FYHQFN 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.984	0.768	0.779	2e-168
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.957	0.669	0.403	3.8e-78
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.957	0.680	0.395	5.5e-77
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.924	0.681	0.328	2.1e-52
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.944	0.700	0.307	2.2e-50
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.713	0.398	0.304	1.6e-37
MGI|MGI:1344426	1092	Esyt1 "extended synaptotagmin-	0.836	0.304	0.300	8.2e-36
RGD|3053	1088	Esyt1 "extended synaptotagmin-	0.836	0.306	0.300	2.2e-35
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.834	0.300	0.295	1.3e-34
UNIPROTKB|A0FGR9	886	ESYT3 "Extended synaptotagmin-	0.826	0.371	0.293	2e-33

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
 Identities = 308/395 (77%), Positives = 355/395 (89%)

Query:     1 MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
             MGLISG+  G+IFG+ALMAGW  MM +RS+KR+AKA D+K+LGSL+RDDLKKICGDNFP 
Sbjct:     1 MGLISGILFGIIFGVALMAGWSRMMTHRSSKRVAKAVDMKLLGSLSRDDLKKICGDNFPQ 60

Query:    61 WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
             WISFP +EQVKWLNK LSK+WP++A+AA +VI++SVEPLLE+YRPPGITSLKFSKL+LGN
Sbjct:    61 WISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPPGITSLKFSKLTLGN 120

Query:   121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
             VAPKIEGIRVQS K+GQ+TMD+D RWGGDP+I+LGV  A+VASIPIQLKDLQVFTV RVI
Sbjct:   121 VAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGV-TALVASIPIQLKDLQVFTVARVI 179

Query:   181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
             FQLA+EIPCISAVVVALL+EPKPRIDYTLKAVGGSLTAIPG++DMIDDTVD+I+ DMLQW
Sbjct:   180 FQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDMLQW 239

Query:   241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
             PHRIVVPIGGIPVD S+LELKPQGK+ VT+VKA NLKN E+IGKSDPYA ++I+P+FK K
Sbjct:   240 PHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRPVFKYK 299

Query:   301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
             T  ++NNLNPVW+QTFELIAEDKETQSL  EVFDKD+GQD+RLG+VKLPL  LEA   KE
Sbjct:   300 TKAIENNLNPVWDQTFELIAEDKETQSLTVEVFDKDVGQDERLGLVKLPLSSLEAGVTKE 359

Query:   361 AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395
              EL LL SLD LK+KDKKDRGSIT+KV    H FN
Sbjct:   360 LELNLLSSLDTLKVKDKKDRGSITLKV--HYHEFN 392

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 159/394 (40%), Positives = 246/394 (62%)

Query:     1 MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKIC-GDNFP 59
             MG + G+F+G+     L+  +      RST+R   A  I     +   D +K+  GD +P
Sbjct:     1 MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query:    60 VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
              W+ F   +++ WLN EL K+WP+V +AA  +IK SVEP+LE+Y P  + SLKFSK +LG
Sbjct:    61 SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query:   120 NVAPKIEGIRVQSLKQGQ--ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVI 177
              VAP+  G+ +   + G   ITM+++ +W G+P I+L V+  +  S+PI++K++    V 
Sbjct:   121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query:   178 RVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITD 236
             R+IF+ L +E PC  A+  +L    K  +D+TLK +GG LT+IPGI+D I++T+   I D
Sbjct:   181 RLIFKPLVDEFPCFGALSYSL--REKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIED 238

Query:   237 MLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL 296
              + WP R ++PI  +P D S+LELKP GK+ V +V+A +L N +MIGKSDPYA+V I+PL
Sbjct:   239 SITWPVRKIIPI--LPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPL 296

Query:   297 --FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL 353
                  KT  + N+LNP+WN+ FE I ED  TQ L   VFD + +G  + +G  ++PL +L
Sbjct:   297 PDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNEL 356

Query:   354 EADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
                  K+  L+L+  L++ +  D K+RG + +++
Sbjct:   357 VPGKVKDIWLKLVKDLEIQR--DTKNRGQVQLEL 388

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 155/392 (39%), Positives = 252/392 (64%)

Query:     1 MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF-P 59
             MG I GV +G++ GIA++ G+  +   RS  R   A  +     +  +D +K+    F P
Sbjct:     1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query:    60 VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
              W+ F   +++ WLN  L+K+WP+V +AA  +IK SVEP+LE+YRP  + SL FSKL+LG
Sbjct:    61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query:   120 NVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRV 179
              VAP+  G+ V    +  IT+++D +W G+P+I+LGV+  +  S+PIQ+K++    V R+
Sbjct:   121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query:   180 IFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDML 238
             IF+ L E+ PC  AV V+L    K ++D+TLK VGG ++AIPG+++ I++T+   + D +
Sbjct:   181 IFRPLVEDFPCFGAVSVSL--REKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query:   239 QWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF- 297
              WP R V+PI  IP D S+LELKP G + V +V+A NL N +++GKSDP+A + I+PL  
Sbjct:   239 TWPVRKVIPI--IPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLRE 296

Query:   298 KVK-TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEA 355
             K K +  ++N+LNP+WN+ FE + ED  TQ L+  ++D + +   + +G  ++ L +LE 
Sbjct:   297 KTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEP 356

Query:   356 DTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
                K+  L+L+  L++ +  D K+RG + +++
Sbjct:   357 GKVKDVWLKLVKDLEIQR--DTKNRGEVHLEL 386

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 129/393 (32%), Positives = 212/393 (53%)

Query:     1 MGLISGVFMGMIFGI-ALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFP 59
             +G + G+ +G+I G   L+        Y   + + + + I +L  L  D          P
Sbjct:    11 IGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETS-ISVLLDLLPD---------IP 60

Query:    60 VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPG-ITSLKFSKLSL 118
             +W+  P YE+V W NK +S +WP++  A   +I+ SV+PL  +Y     I S++F  LSL
Sbjct:    61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query:   119 GNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIR 178
             G + P + G++     + ++  +   +W G+P+I+L V   +   I +QL DLQ F ++R
Sbjct:   121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVL-VLKVLSLRIRVQLVDLQFFAIVR 179

Query:   179 VIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDM 237
             V  + L    PC   VVV+L+   KP +D+ LK +GG L +IPG+   + +T+   ++ M
Sbjct:   180 VALKPLLPTFPCFGMVVVSLME--KPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSM 237

Query:   238 LQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--K 294
               WP  + +PI    +D+S   +K P G + V+I++A NL   +++G SDPY  + +  +
Sbjct:   238 YHWPQVLEIPI----LDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGE 293

Query:   295 PLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL 353
              L   KT +   NLNP WN+ F+LI +D  +Q L  EVFD D +G   RLG+  +PL  +
Sbjct:   294 KLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKI 353

Query:   354 EADTPKEAELRLLPSLDMLKIK-DKKDRGSITV 385
                  KE  L L+ + +++    DKK RG + V
Sbjct:   354 NPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEV 386

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 122/397 (30%), Positives = 222/397 (55%)

Query:     1 MGLISGVF--MGMIFG--IALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGD 56
             MG+IS +   +G  FG  I ++ G+   + ++ST    +  +IK L  L+ + +  +  +
Sbjct:     1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFPE 58

Query:    57 NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSK 115
               P+W+  P ++++ WLNK +  +WP++  A   + K   +P++ E  P   I S++F  
Sbjct:    59 -IPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117

Query:   116 LSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
             L+LG++ P  +G++V +    +I M++  +W G+P+II+ V  A      +Q+ DLQV+ 
Sbjct:   118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIV-VAKAFGLKATVQVIDLQVYA 176

Query:   176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
               R+  + L    PC + + V+L+   KP++D+ LK +G  + AIPG+   + + +   +
Sbjct:   177 TPRITLKPLVPSFPCFANIFVSLMD--KPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQV 234

Query:   235 TDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK 294
              +M  WP  + V I    +D S+   KP G ++V ++KA  LK  +++G SDPY  + + 
Sbjct:   235 ANMYLWPKTLNVQI----MDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLS 290

Query:   295 PLFKV---KTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFD-KDIGQDKRLGIVKLPL 350
                KV   KT V  +NLNP WN+ F+L+ ++ E+Q L   V+D + +G+  ++G+  + L
Sbjct:   291 G-DKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQL 349

Query:   351 IDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
              DL  + PK   L LL S++  +   +K RG + V+V
Sbjct:   350 KDLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVVEV 386

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 409 (149.0 bits), Expect = 1.6e-37, P = 1.6e-37
 Identities = 92/302 (30%), Positives = 163/302 (53%)

Query:    57 NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKL 116
             + P W+ FP  E+V+WLNK + +LWP+V +  +  + + + P ++   P    + KF+K+
Sbjct:    74 DLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPGMFKNFKFTKM 133

Query:   117 SLGNVAPKIEGIRVQSLKQGQ--ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVF 174
              +G++  ++ GI+V +   G+  I +D+D  + GD    +             + ++Q  
Sbjct:   134 DMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSC-----CGFTGGMNNIQFS 188

Query:   175 TVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSI 233
               +R I + L    P +  V    L  PK  +D+ L  +G  +  +PG+ D I   ++S 
Sbjct:   189 GKLRAILKPLLPYPPMVGGVSGTFLEMPK--MDFNLTGMG-EMVELPGLIDAIRSVINSQ 245

Query:   234 ITDMLQWPHRIVVPIGGIPVDTSELEL-KPQGKVAVTIVKANNLKNMEMI----GKSDPY 288
             I  +   P+ IVVP+    VD ++L   +P G V + I++A NL+N ++     GKSDPY
Sbjct:   246 IAALCVLPNEIVVPLAP-DVDVTQLYFPEPDGVVRLKIIEAKNLENRDISFIKKGKSDPY 304

Query:   289 AVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 348
             A + +   F  KT  +D++LNP+WN+ FE + +  + Q L  E+FD+D G+D+ LG + +
Sbjct:   305 AEIQVGSQF-FKTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELFDEDQGKDEELGRLSV 363

Query:   349 PL 350
              L
Sbjct:   364 DL 365

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:1344426 Esyt1 "extended synaptotagmin-like protein 1" [Mus musculus (taxid:10090)]

 Score = 398 (145.2 bits), Expect = 8.2e-36, P = 8.2e-36
 Identities = 107/356 (30%), Positives = 189/356 (53%)

Query:     5 SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDN--FPVW 61
             +G+ +G + FG+AL  GWR   R R  K  +  A  ++L    R   + +   +   P W
Sbjct:    64 AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAW 120

Query:    62 ISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNV 121
             +SFP  E+ +WLNK ++++WPF+    E ++ E+V P +    P  + +  F+++ LG  
Sbjct:   121 VSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRVELGEK 179

Query:   122 APKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
               +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI
Sbjct:   180 PLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVI 236

Query:   181 FQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQ 239
              + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L 
Sbjct:   237 LEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLV 293

Query:   240 WPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME-----MI-GKSDPYAVVH 292
              P+R++VP+     D ++L    P+G + + ++ A  L + +     +I GKSDPYA+V 
Sbjct:   294 LPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVR 353

Query:   293 IKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 348
             +       + V+D  LNP W +T+E+I  +   Q +  EVFDKD  +D  LG +KL
Sbjct:   354 VGTQ-TFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 408

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 394 (143.8 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 107/356 (30%), Positives = 188/356 (52%)

Query:     5 SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDN--FPVW 61
             +G+ +G + FG+AL  GWR   R R  K  +  A  ++L    R   + +   +   P W
Sbjct:    66 AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAW 122

Query:    62 ISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNV 121
             +SFP  E+ +WLNK + ++WPF+    E ++ E+V P +    P  + +  F+++ LG  
Sbjct:   123 VSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRVELGEK 181

Query:   122 APKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
               +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI
Sbjct:   182 PVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHGVLRVI 238

Query:   181 FQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQ 239
              + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L 
Sbjct:   239 LEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLV 295

Query:   240 WPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME-----MI-GKSDPYAVVH 292
              P+R++VP+     D ++L    P+G + + ++ A  L + +     +I GKSDPYA+V 
Sbjct:   296 LPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVR 355

Query:   293 IKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 348
             +       + V+D  LNP W +T+E+I  +   Q +  EVFDKD  +D  LG +KL
Sbjct:   356 VGTQ-TFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 410

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 387 (141.3 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 105/355 (29%), Positives = 187/355 (52%)

Query:     6 GVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDN--FPVWI 62
             G+ +G + FG+AL  GWR   R R  K  +  A  ++L    +   K +   +   P W+
Sbjct:    75 GLSVGFVLFGLALYLGWR---RVRDEKERSLRAARQLLDDEEQLTAKTLYMSHRELPAWV 131

Query:    63 SFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVA 122
             SFP  E+ +WLNK ++++WPF+    E ++ E+V P +    P  + +  F+++ LG   
Sbjct:   132 SFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTRVELGEKP 190

Query:   123 PKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIF 181
              +I G++V    ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI 
Sbjct:   191 LRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVIL 247

Query:   182 Q-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
             + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  
Sbjct:   248 EPLIGDLPFVGAVSMFFIRRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVL 304

Query:   241 PHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME-----MI-GKSDPYAVVHI 293
             P+R++VP+     D ++L    P+G + + ++ A  L + +     +I GKSDPYA+V +
Sbjct:   305 PNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRL 364

Query:   294 KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 348
                    + V+D  LNP W +T+E++  +   Q +  EVFDKD  +D  LG +KL
Sbjct:   365 GTQ-TFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 418

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 103/351 (29%), Positives = 179/351 (50%)

Query:    11 MIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQV 70
             ++ G  L   WR   R R  K    AA  + L +      +++ G + P WI FP  E+V
Sbjct:    62 LLLGALLWMWWR---RNRRGKLGRLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERV 118

Query:    71 KWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRV 130
             +W NK +S+ WP+++   E   +E +EP + E +   + +  F+KL  G   P++ G++ 
Sbjct:   119 EWANKIISQTWPYLSMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKA 177

Query:   131 QS--LKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQ-LAEEI 187
              +    + ++T+D+   + GD  I   VE   +  I   +  +Q+   +RVI + L  + 
Sbjct:   178 HTNTCNRRRVTVDLQICYIGDCEI--SVE---LQKIQAGVNGIQLQGTLRVILEPLLVDK 232

Query:   188 PCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVP 247
             P + AV V  L +P  +I++T   +   L A PGI D+ D  ++ +I   L  P+R+ VP
Sbjct:   233 PFVGAVTVFFLQKPHLQINWT--GLTNLLDA-PGINDVSDSLLEDLIATHLVLPNRVTVP 289

Query:   248 IG-GIPVDTSELELKPQGKVAVTIVKANNLKNME----MIGKSDPYAVVHIKPLFKVKTN 302
             +  G+ +      L P G + V +++A  L   +    + GKSDPYA V I  L   ++ 
Sbjct:   290 VKKGLDLTNLRFPL-PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIG-LQHFRSR 347

Query:   303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDL 353
              +  NLNP WN+ FE +  +   Q L  +++D+D  +D  LG +++ L D+
Sbjct:   348 TIYRNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDV 398

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-35
cd00030	102	cd00030, C2, C2 domain	7e-27
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-23
pfam00168	85	pfam00168, C2, C2 domain	1e-22
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-21
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	3e-17
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	1e-15
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-15
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	4e-15
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-14
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-13
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	8e-13
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	8e-13
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-12
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-12
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-12
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-12
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-11
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-11
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	3e-11
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	2e-10
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-10
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	7e-10
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	8e-10
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	2e-09
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-09
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-09
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-09
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-09
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	4e-09
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-09
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	7e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	8e-09
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-08
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-08
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	4e-08
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	6e-08
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	7e-08
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	9e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-07
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-07
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	4e-07
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	7e-07
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-06
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-06
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	2e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	7e-06
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	8e-06
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	1e-05
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	5e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	7e-05
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	8e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	9e-05
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	1e-04
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	2e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-04
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	3e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	5e-04
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	6e-04
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	0.001
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	0.002
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	0.002
cd08690	155	cd08690, C2_Freud-1, C2 domain found in 5' repress	0.002
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	0.002
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	0.003
pfam14429	179	pfam14429, DOCK-C2, C2 domain in Dock180 and Zizim	0.003

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  137 bits (347), Expect = 3e-35
 Identities = 98/324 (30%), Positives = 144/324 (44%), Gaps = 33/324 (10%)

Query: 67  YEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIE 126
           YE V+WLN  L K WP +  +    + + V   L E  P  I +L   + +LG+  P+I+
Sbjct: 220 YESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRID 279

Query: 127 GIRV-QSLKQGQITMDIDF---------------RWGGDPSIILGVEAAM---VASIPIQ 167
           GIR   S +   + MD+DF               R   +P I L V+        ++PI 
Sbjct: 280 GIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339

Query: 168 LKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGS-----LTAIPGI 222
           ++DL     +RV  +L  + P I  V   LL    P  D+ L  +GG      + AIPG+
Sbjct: 340 VEDLFFKGRVRVRVELMSKYPFIKTVSFQLLE--VPEFDFILVPLGGDFFGVDIFAIPGL 397

Query: 223 ADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMI 282
           +  I + ++S +  ML  P+ + + I  I    S   +   G V V I  A  LK  +  
Sbjct: 398 SRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAI---GVVEVKIKSAEGLKKSDST 454

Query: 283 --GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK-DIGQ 339
             G  DPY  V        KT V  N LNPVWN+TF ++     T  L   ++D      
Sbjct: 455 INGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLN-SFTDPLNLSLYDFNSFKS 513

Query: 340 DKRLGIVKLPLIDLEADTPKEAEL 363
           DK +G  +L L  L  +  K+ EL
Sbjct: 514 DKVVGSTQLDLALLHQNPVKKNEL 537

Length = 1227

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  102 bits (257), Expect = 7e-27
 Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           VT+++A NL   ++ GKSDPY  V +    K KT VV N LNPVWN+TFE    D E+ +
Sbjct: 3   VTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDT 62

Query: 328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE 360
           L  EV+DKD   +D  LG V++PL +L     + 
Sbjct: 63  LTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG 96

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 92.9 bits (231), Expect = 3e-23
 Identities = 44/99 (44%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAED 322
            + V I+ A NL   +  GKSDPY  V +   P  K KT VV N LNPVWN+TFE     
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 323 KETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE 360
            E   L  EV+DKD  G+D  +G V +PL DL      E
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           VT++ A NL   ++ GKSDPY  V +  +     KT VV N LNPVWN+TF       E 
Sbjct: 3   VTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPEL 62

Query: 326 QSLIFEVFDKD-IGQDKRLG 344
             L  EV+D D  G+D  +G
Sbjct: 63  AELRIEVYDYDRFGKDDFIG 82

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 264 GKVAVTIVKANNLKNMEMI------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFE 317
           G + + +++A +L   +        GKSDPY +V +      K+ V+  NLNP WN+ +E
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYE 59

Query: 318 LIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLE 354
            + ++   Q L  E+FD+D  +D  LG + + L  +E
Sbjct: 60  AVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVE 96

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           V ++ A NL + +  GKSDP+   ++  + +FK  T  +   LNPVWN++FE+    +  
Sbjct: 3   VDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 326 QSLIFEVFDKDIG-QDKRLGIVKLPLIDLEADTPKEAELRL 365
             L  EV+D D G +D  LG   + L DLE +   E  L L
Sbjct: 61  AVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL-IAEDKETQSL 328
           I KAN+LKN+E +GK DPY  V +  + K +T  + N LNPVW++   + +      Q +
Sbjct: 7   IRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN--QKI 64

Query: 329 IFEVFD-KDIGQDKRLGIVKLPLIDL 353
             EV D + +G+D+ LG V++ + DL
Sbjct: 65  TLEVMDYEKVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 264 GKVAVTIVKANNLKNMEMIGKS-DPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAE 321
           G +AVTI  A  LK  ++IG + DPY    I       +T V  +  NPVWN+T  ++  
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV- 60

Query: 322 DKETQSLIFEVFDK-DIGQDKRLGIVKLPLIDLEAD-TPKEAELRLLPSLDMLKIKDKKD 379
           +  T+ L   V+D  D  +DK +G  +  L  L  +   +     LL        ++ K 
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKP 112

Query: 380 RGSIT 384
            G + 
Sbjct: 113 VGELN 117

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVV-DNNLNPVWNQTFELIAEDKETQ 326
           +TI+ A +LKN+ + GK   YAVV I P  K  T V  D   NP WN+T     +++  Q
Sbjct: 4   ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63

Query: 327 S----LIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366
                L  EV+ +     DK +G V++PL DL        ELR L
Sbjct: 64  QGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFL 108

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT--FE 317
            ++ V ++KA NL   +  G SDPY  V +    K L K KT+V    LNPV+N+   F+
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLG 344
           + AE  E  SL+  V DKD +G+++ +G
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 268 VTIVKANNL--KNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           V +V+A +L  K+    GKSDPYA++ +    + KT  + N LNP WN   E      + 
Sbjct: 5   VHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQN 63

Query: 326 QSLIFEVFDKDIGQDKR-LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSIT 384
           Q L   ++DKD    K  LG   + L ++ AD       + +        K     G I 
Sbjct: 64  QLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIH 123

Query: 385 VK 386
           ++
Sbjct: 124 LQ 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           V +++A N+   +++   D Y  + +      K +T  + N++NPVWN+TFE   + +  
Sbjct: 4   VRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVK 63

Query: 326 QSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
             L   V D+D   D  LG V   +  L+      
Sbjct: 64  NVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVR 98

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 283 GKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIG-Q 339
           G SDPY       K ++K KT  +  NLNPVW++ F L  ED  TQ L  +VFD D G  
Sbjct: 19  GTSDPYVKFKYGGKTVYKSKT--IYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLT 75

Query: 340 DKRLGIVKLPLIDLEADTPKEAELRL 365
           D  +G   + L  LE + P E +L+L
Sbjct: 76  DDFMGSAFVDLSTLELNKPTEVKLKL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 7/92 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT--FE 317
           G++ +TI+KA NLK M++ G SDPY  V +    + L K KT+V  N LNP +N+   F+
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
           +  E+ +  SLI  V D D +G ++ +G+ ++
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGVCRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL- 318
            ++ V I+KA NLK M++ G SDPY  V +    K + K KT +    LNPV+N++F   
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 319 IAEDK--ETQSLIFEVFDKD-IGQDKRLGIVKLP 349
           I  ++  ET +LI  V DKD + ++  +G + L 
Sbjct: 75  IPLERLRET-TLIITVMDKDRLSRNDLIGKIYLG 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 21/133 (15%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G + V +V+  NL   +    SDPY V+ +    KVKT V+  NLNPVWN+   L   + 
Sbjct: 2   GLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQ-KVKTRVIKKNLNPVWNEELTLSVPNP 59

Query: 324 ETQSLIFEVFDKDI-GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGS 382
               L  EVFDKD   +D  +G               EAE+ L P ++  K+   +D   
Sbjct: 60  MAP-LKLEVFDKDTFSKDDSMG---------------EAEIDLEPLVEAAKLDHLRDTPG 103

Query: 383 ITV--KVGASKHS 393
            T   KV  S  +
Sbjct: 104 GTQIKKVLPSVEN 116

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 7/92 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFE 317
           GK+ V I++A NLK M++ G SDPY  +H+    K L K KT +    LNP +N+  +FE
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
           +  E  +   LI  V D D IG++  +G V L
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 19/112 (16%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTFELIA 320
             ++ V I++A +L  M+M G SDPY  V++ P  K K  T V    LNPV+N+TF    
Sbjct: 15  SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKV 74

Query: 321 EDKETQS--LIFEVFDKD-------IGQDKRLGIVKLPLIDLEADTPKEAEL 363
              E  +  L+F V+D D       IG+      V++PL  L  D     E 
Sbjct: 75  PYSELGNKTLVFSVYDFDRFSKHDLIGE------VRVPL--LTVDLGHVTEE 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKP--LF----KVKTNVVDNNLNPVWNQTFE--LI 319
           V I+ A NL  ++  G SDP+  V + P  LF      KT V    L P+++++FE  + 
Sbjct: 20  VEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79

Query: 320 AEDKETQS--LIFEVFDKD-IGQDKRLGIVKLPLIDL 353
            E    +   L+F V D D +G +   G   LPL D+
Sbjct: 80  PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE---LIA 320
            TI++A  LK M+  G SDPY  +++ P      K++T  V    NP +N+T     +  
Sbjct: 19  CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78

Query: 321 EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD 356
           ED + ++L   V D+D  G D  LG  ++PL  L+ +
Sbjct: 79  EDIQRKTLRLLVLDEDRFGND-FLGETRIPLKKLKPN 114

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 15/123 (12%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF-- 316
           +  + V I++  NL  M+  G SDP+  +++KP      K KT V    LNP +N+ F  
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 317 ELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
           ++   D   ++L   V+DKDIG+ +  +G ++L +        K   LR    LD LK  
Sbjct: 72  DIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGI------NAKGERLRHW--LDCLKNP 123

Query: 376 DKK 378
           DKK
Sbjct: 124 DKK 126

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVK------TNVVDNNLNPVWNQTFEL--IAE 321
            +   NL + +++ KSDP+ VV++K     +      T V+ NNLNP +  TF +    E
Sbjct: 6   SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE 65

Query: 322 DKETQSLIFEVFDKD 336
             E Q L FEV+D D
Sbjct: 66  --EVQKLRFEVYDVD 78

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 264 GKVAVTIVKANNLKNMEM-IGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL 318
           G + VTI +A +L   +   G SDPY         KPL+   T ++  +LNPVW +T+ +
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYS--TRIIRKDLNPVWEETWFV 58

Query: 319 --IAEDKETQ-SLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
               ++ +    L   ++D D    D RLG V++ L +L  D   
Sbjct: 59  LVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNW 103

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 55.6 bits (135), Expect = 8e-10
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 271 VKANNLKNMEMIGKSDPYAVVHIK-------PLFKVKTNVVDNNLNPVWNQTFELIAED- 322
                L   +  GKSDP+  +  +        ++  +T V+ N LNPVW   F +  +  
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVY--RTEVIKNTLNPVWK-PFTIPLQKL 63

Query: 323 ---KETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAEL 363
                 + +  EV+D D  G+   +G  +  L +L   +P E EL
Sbjct: 64  CNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTF-- 316
             K+ V + +A NL  M+  G SDPY  + +    K   K KT  +   LNPVWN+TF  
Sbjct: 12  DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTF 71

Query: 317 ELIAEDKETQSLIFEVFDKD 336
           +L   DK+   L  EV+D D
Sbjct: 72  DLKPADKDR-RLSIEVWDWD 90

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 37/94 (39%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 265 KVAVTIVKANNLKNMEMIGKS--DPYAVVHIKPL-----FKVKTNVVDNN-LNPVWNQTF 316
            + + I+    L   +    S  DPY  V I  L      K KT VV NN  NPVWN+TF
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 317 ELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPL 350
           E      E   L F V+D+D G D  LG   LPL
Sbjct: 63  EFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPL 96

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 269 TIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL----IAEDKE 324
            +V   NL  +   GK D  A V  +   K KT V++N LNPVWN+TFE       +  E
Sbjct: 1   LVVSLKNLPGL--KGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 325 TQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366
             SL   V D + +G+++ +G   + L DL ++   E    LL
Sbjct: 58  --SLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL 98

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE---LIA 320
           VT+++A +L   +     +PY  V++ P      K +T  V   LNP WNQTFE   +  
Sbjct: 20  VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79

Query: 321 EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLE 354
           E  + ++L   V+D D  G++  LG V   +IDL 
Sbjct: 80  ETLKERTLEVTVWDYDRDGENDFLGEV---VIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G + V +++A+ L   ++ GKSDP+ V+ +    +++T+ +   LNP WN+ F    +D 
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIKDI 59

Query: 324 ETQSLIFEVFDKDIGQDKR---LGIVKLPLIDLE 354
                + EV   D  +DK+   LG V +PL+ ++
Sbjct: 60  HD---VLEVTVYDEDKDKKPEFLGKVAIPLLSIK 90

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI------KPLFKVKTNVVDNNLNPVWNQTFELIAE 321
           V ++   +L   ++ G SDPY  + +        +  V+T  +   LNP WN+ F     
Sbjct: 4   VKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEF-FFRV 62

Query: 322 DKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAE 362
           +     L+FEVFD++ + +D  LG V++PL +L  +TP    
Sbjct: 63  NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNER 104

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 280 EMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDI 337
              G   PYA +++  K ++   T V     NP WN + E +  D+    +   V D   
Sbjct: 8   SKTGLLSPYAELYLNGKLVYT--TRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD 65

Query: 338 GQDKRLGIVKLPLIDL 353
             D  LG V + L DL
Sbjct: 66  RHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQ--TFEL---I 319
           V VT+++A  L      G +D Y ++ + K   K  T+V +   +PVW +  +FEL   +
Sbjct: 1   VQVTVLQARGLLCKGKSGTNDAYVIIQLGKE--KYSTSVKEKTTSPVWKEECSFELPGLL 58

Query: 320 AEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKK 378
           + +    +L   V  ++ +G DK LG V +PL DL+ D  K         L+    KD K
Sbjct: 59  SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDED--KGRRRTRWFKLESKPGKDDK 116

Query: 379 DRGSITVKVG 388
           +RG I V + 
Sbjct: 117 ERGEIEVDIQ 126

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV--KTNVVDNNLNPVWNQTFELIAEDKET 325
           + IV+A NLK     G SDPY  +      +   KT  + + LNP W++ FEL     E 
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 326 QSLIFEVFDKDIGQD 340
             +   V+D+     
Sbjct: 65  LWISATVWDRSFVGK 79

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 250  GIPVDTSELEL-KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNL 308
             +PV    +E+ +  G + + +    NL + +  G SDP+  + +      KT VV   L
Sbjct: 1025 PVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTL 1084

Query: 309  NPVWNQTFELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRL 365
            NPVWN+ F +   ++    L   V D D G+ +  LG  ++ L  LE      + + L
Sbjct: 1085 NPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL 1142

Length = 1227

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G++ V IV+  +LK     GKSDPY  V +      KT VV + LNP WN + +   +D 
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEH-KTKVVSDTLNPKWNSSMQFFVKDL 73

Query: 324 ETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADT 357
           E   L   VFD+D    D  LG  ++ + D+  +T
Sbjct: 74  EQDVLCITVFDRDFFSPDDFLGRTEIRVADILKET 108

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE 321
           P G + V++ KAN+L+N    GKSDPYA V +  L K +T    + LNP+WN+   +   
Sbjct: 709 PIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVT 768

Query: 322 DKETQSLIFEVFD-KDIGQDKRLGIVKLPLIDLEADTPKEAELRLL---PSLDMLKIKDK 377
            K  Q L  E  D ++ G D+ LG V + + ++       A +  +        L +  K
Sbjct: 769 SK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGK 827

Query: 378 KDRGSITVKV 387
           K +G+IT K 
Sbjct: 828 KVKGTITYKC 837

Length = 1227

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAEDKE 324
           V V +V+A NL+  +  GKSDPY  + + K     + N + N LNPV+ + FEL A    
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61

Query: 325 TQSLIFEVFDKD-IGQDKRLGIVKLPLIDLE 354
              L   V D D +G D  +G      IDLE
Sbjct: 62  NSILKISVMDYDLLGSDDLIGETV---IDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQT--FELIAEDK 323
           + I+KA  L   +  G SDP+  +++ P  K K  T V   NLNP WN+T  FE    +K
Sbjct: 20  LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79

Query: 324 ETQ-SLIFEVFDKD-IGQDKRLGIVKLPL--IDLE 354
             Q  L  +V D D   ++  +G V LPL  +DL 
Sbjct: 80  LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLT 114

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK-TNVVDNNLNPVWNQTFELIAED 322
             + VT+++A  L   +    +D Y  V +    + K T V+ NN NP WN TF+  + +
Sbjct: 28  ATLTVTVLRATGL-WGDYFTSTDGY--VKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVE 84

Query: 323 -KETQSLIFEVFDKDIGQ-DKRLGIVKLPL 350
                 L FEV+D+D G  D  LG   +  
Sbjct: 85  LSPGGKLRFEVWDRDNGWDDDLLGTCSVVP 114

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 31/114 (27%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI------------KPLFKVK--------------- 300
           VT+++A  L   ++ G SDPY ++ I            K     +               
Sbjct: 32  VTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK 91

Query: 301 -TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDL 353
            T V    LNPVWN+TF    ED     L  +++D D   D  LG V +PL DL
Sbjct: 92  VTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDL 142

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 12/113 (10%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV-----KTNVVDNNLNPVWNQTFELIA 320
           V + +V+  NL  M+  G SDPY    +K  F++     K+ V    LNP W + F+L  
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPY----VK--FRLGNEKYKSKVCSKTLNPQWLEQFDLHL 55

Query: 321 EDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDML 372
            D ++Q L  EV+DKD G+ D+ +G  ++ L  L  +     EL L      L
Sbjct: 56  FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSL 108

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKE 324
           V  +KAN L   E  G S+PY V+ + +P  K +++   N  NP W++   FEL    KE
Sbjct: 3   VKNIKANGLS--EAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKE 60

Query: 325 TQSLIFEVFDK-DIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSI 383
              L+FEV+D       K LG+  +P  +L  +        L         +     GSI
Sbjct: 61  ---LLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSI 113

Query: 384 TVKVG 388
           TV+  
Sbjct: 114 TVEFL 118

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE 324
           KV +T++ A+ L   ++    DP+AV+ +       T+V    L+P WN+ F+L      
Sbjct: 1   KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSS 60

Query: 325 TQSLIFEVFDK---DIGQDKRLGIVKLPLID-LEADTPKEAELRLLPS 368
              +  +VFD+          LG V++     L         L L   
Sbjct: 61  --IITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKL 106

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV----KTNVVDNNLNPVWNQTFE 317
            + K+ VT+ K  NL   +     DPY  +++ P        KT+V  +NLNPV+++TFE
Sbjct: 14  QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFE 73

Query: 318 LIAEDKETQSLIFEV 332
                +E +    +V
Sbjct: 74  FPVSLEELKRRTLDV 88

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 43/137 (31%)

Query: 268 VTIVKANNLKNMEM------------------------------IGKSDPYAVVHIKPLF 297
           VTI +A+NL NM+M                                 SDPYA V +    
Sbjct: 11  VTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGAR 70

Query: 298 KVKTNVVDNNLNPVWNQTFEL-----IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLI 351
             +T V++N+ NPVWN++F +      +       + F V D D +G    +G   +P+ 
Sbjct: 71  VARTRVIENSENPVWNESFHIYCAHYASH------VEFTVKDNDVVGAQL-IGRAYIPVE 123

Query: 352 DLEADTPKEAELRLLPS 368
           DL +  P E  L +L S
Sbjct: 124 DLLSGEPVEGWLPILDS 140

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK-PLFKVKTNVVDNNLNPVWNQTFELIA 320
           PQ    V +  A  L   +  G +DPY +  IK     V++ V  + L+P ++    +  
Sbjct: 1   PQVVTQVHVHSAEGLSKQDSGGGADPYVI--IKCEGESVRSPVQKDTLSPEFDTQA-IFY 57

Query: 321 EDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDR 380
             K    +  +V++ ++  D+ LG   L   D          LR LP     +    +  
Sbjct: 58  RKKPRSPIKIQVWNSNLLCDEFLGQATLS-ADPNDSQ----TLRTLPLRKRGRDAAGEVP 112

Query: 381 GSITVKVGAS 390
           G+I+VKV +S
Sbjct: 113 GTISVKVTSS 122

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 273 ANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           A NL   +   +  PY  + +    + K+ V +   NPVW + F  +  + E Q L  EV
Sbjct: 9   AKNLPLAKSTKEPSPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFLVRNPENQELEIEV 67

Query: 333 FDKDIGQDKRLGIVKLPLIDL 353
            D      K LG + LPL +L
Sbjct: 68  KDDK--TGKSLGSLTLPLSEL 86

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 269 TIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSL 328
            +++A +L   +  G SDP+  V       ++T+VV  +  P WN+ FE    +     L
Sbjct: 5   HVLEARDLAPKDRNGTSDPFVRVFYNGQ-TLETSVVKKSCYPRWNEVFEFELMEGADSPL 63

Query: 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSI 383
             EV+D D + ++  LG V   +  L+    +E   RLLP        +++  G++
Sbjct: 64  SVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD----PRAEEESGGNL 115

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 13/112 (11%)

Query: 268 VTIVKANNLKNM-EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE---LIAE 321
           V I++  +L  M E  G SDPY  + + P    KVKT V+    NPV+++TF    +   
Sbjct: 20  VNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79

Query: 322 DKETQSLIFEV--FDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDM 371
             +  SL F V  FD+   +D  +G V  PL    A      E  LL S ++
Sbjct: 80  QLQDLSLHFAVLSFDR-YSRDDVIGEVVCPL----AGADLLNEGELLVSREI 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTF 316
           K+++T+V A  L   +  G SDPY  V +    K +T  +  NLNPVWN+ F
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQVGKT-KKRTKTIPQNLNPVWNEKF 52

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 15/95 (15%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKET-Q 326
           V +VKA  L        +DP   V +   +K  T  ++   NP WNQ F   A  K+  Q
Sbjct: 4   VRVVKARGLPANS----NDPVVEVKLGN-YKGSTKAIERTSNPEWNQVF---AFSKDRLQ 55

Query: 327 SLIFEVF--DKDIGQDKRLGIVKLPLIDLEADTPK 359
               EV   DKD  +D  LG V     DL ++ P 
Sbjct: 56  GSTLEVSVWDKDKAKDDFLGGVC---FDL-SEVPT 86

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYA---VVHIKPLFKV-KTNVVDNNLNPVWNQT 315
           L   G++ V I++A  L   +M   SDP+    +VH   L K  KT+ +   ++P +N++
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 316 --FELIAEDKETQSLIFEVFDKDI 337
             F++  E+ E  SL+F V+  ++
Sbjct: 70  FSFKVPQEELENVSLVFTVYGHNV 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTF--E 317
            ++ V ++KA +L  M++ G +DPY  V++    K + K KT+V    LNPV+N++F  +
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 318 LIAEDKETQSLIFEVFDKD 336
           + +E+ E  S+ F V D D
Sbjct: 75  IPSEELEDISVEFLVLDSD 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED- 322
           G + V ++ A  L++ + +GK DPY ++  +   +       +  NP WN+ F+   E  
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 323 --KETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL--EADTPKEAELRLLP 367
                  LI  + DKD    D  +G   + L  L  E   P  AEL    
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF---KVKTNVVDNNLNPVWNQTFELIAE 321
           K+ V +V A +L   +  G S  Y  +     F   K +T     +LNPVWN+       
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVELD----FDGQKKRTRTKPKDLNPVWNEKLVFNVS 56

Query: 322 DKETQSLIFEVFDKDIGQDKR-------LGIVKLP 349
           D     L   V +  +  D+R       LG V++ 
Sbjct: 57  D--PSRLSNLVLEVYVYNDRRSGRRRSFLGRVRIS 89

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 283 GKSDPYAVVHIKPLFKV---KTNVVDNNLNPVWNQTFEL---IAEDKETQSLIFEVFDKD 336
           G  DP+A V +    K    +T V     NP +++ F     I    E +S   E  D +
Sbjct: 17  GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76

Query: 337 -------------IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367
                        +  D  LG V++PL  L+     +A   L P
Sbjct: 77  KSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVK-TNVVDNNLNPVWNQ--TF 316
           K  G + V +++A NL+  +  G +DPY  V + P     K + +    LNP +++   F
Sbjct: 13  KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE 360
           E+  ++   ++L   ++D D   +D+ +G+V+LPL +++     +
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLD 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 268 VTIVKANNL------KNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT-- 315
           V I +  NL      K      +S+PY  V++ P      K KT+V  N  NPV+N+T  
Sbjct: 18  VHIKECRNLAYADEKKK-----RSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLK 72

Query: 316 FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365
           + +     ET++L   V+  D  G++  LG V++PL   + D+ +     L
Sbjct: 73  YHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE 324
           ++ +T+  A  LK+     K DPY  V +      KT V     NP WN+ F ++     
Sbjct: 3   QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV--TP 59

Query: 325 TQSLIFEVFDK-DIGQDKRLGIVKLPLIDL 353
             +L F+V+    +  D  LG   L L D+
Sbjct: 60  QSTLEFKVWSHHTLKADVLLGEASLDLSDI 89

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 252 PVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPV 311
           P DT +++ + +G+         N+++   +  SDPY  V +      +T V+ N+  P+
Sbjct: 49  PTDTDDVDPRDKGEFG-----DKNIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPL 103

Query: 312 WNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEA 355
           W++ F  I+       L F+V D D+   + +G  K+P+ D+ +
Sbjct: 104 WDEKFN-ISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIAS 146

Length = 868

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLI 329
           IV+  NL   ++ G SDPY +V +     ++T  V   LNP W + + +        ++ 
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP-PGFHTVS 64

Query: 330 FEVFDKD-IGQDKRLGIVKL 348
           F V D+D + +D  +G V L
Sbjct: 65  FYVLDEDTLSRDDVIGKVSL 84

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 26/105 (24%)

Query: 273 ANNLKNMEMIGKSDPYAVVHIKPLFK---VKTNVVDNNLNPVWNQT--FE--LIAEDKET 325
           A +L   +  G SDP+A V     F     +T V+   L+P W+QT  F+   +    E 
Sbjct: 10  ARDLLAADKSGLSDPFARV----SFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEE 65

Query: 326 -----QSLIFEVFDKDI-GQDKRLG------IVKLPLIDLEADTP 358
                  ++ E+FD+D  G+D+ LG      +VKL   DLE D P
Sbjct: 66  IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKL---DLEEDFP 107

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 283 GKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD 336
            +SDPY   ++ P      K KT+V    LNPV+N+T  +++  E+  T+ L   V+ +D
Sbjct: 35  QRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94

Query: 337 -IGQDKRLGIVKLPL 350
            +G++  LG V++ L
Sbjct: 95  SLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQT 315
               G++ V + +A NL  ++  G SD +   ++ P      K KT VV  ++NPVWN T
Sbjct: 23  KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHT 82

Query: 316 FE---LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
           F    +  ED     L   V+D D +  +  LG V+L
Sbjct: 83  FVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 19/109 (17%)

Query: 264 GKVAVTIVKANNL---KNM-----EMIGKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQ 314
           G V + I    +L   KNM     +M    DP+ ++   + +F+  T+   + LNPV+N+
Sbjct: 1   GVVFMEIKSITDLPPLKNMTRTGFDM----DPFVIISFGRRVFR--TSWRRHTLNPVFNE 54

Query: 315 --TFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE 360
              FE+   +K    + F+V DKD    +  +    L + +L    P+ 
Sbjct: 55  RLAFEVYPHEKNF-DIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQP 102

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVV-DNNLNPVWNQT--FELIA 320
           G + V ++KA NL N   + K DPY V+ I  + K KT        +P W++   FE+  
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTK-KTKTDFRGGQHPEWDEELRFEITE 59

Query: 321 EDKETQSLIFEVFDKD 336
           + K    L   VFD D
Sbjct: 60  DKKPI--LKVAVFDDD 73

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 266 VAVTIVKANNLKNME-MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQ---TFELIAE 321
           + V +V A +L  M+     +D +  V        KT+VV  +LNPVWN     FE+  E
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDE 59

Query: 322 DKETQSLIFEVFDKDI-GQDKRLGIVKLPLIDL 353
           + + + L   V D D    +  +G V    IDL
Sbjct: 60  ELQDEPLQIRVMDHDTYSANDAIGKV---YIDL 89

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--------ETQSLIFEVFDKD--IGQDKRLGIV 346
              KT+ + +  +P +N++F+L    K        +   L FEV+ K   +  DK LG  
Sbjct: 41  QSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTA 100

Query: 347 KLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
           ++ L  LE     + E+    S+D++  + K   G + VKV
Sbjct: 101 QVKLEPLE----TKCEIH--ESVDLMDGR-KATGGKLEVKV 134

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 155

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 20/114 (17%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQ--TFELIAEDKET 325
           + I++A NL +       DPY  V +  +   +T  V+  LNP W +   F+    D   
Sbjct: 4   LRILEAKNLPSKGT---RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTF 59

Query: 326 QSLIFEVFDKD-IGQDKRLGIVKL-------------PLIDLEADTPKEAELRL 365
            +L F   DK    +D  +G V L             PL  ++ D+  +  +RL
Sbjct: 60  FTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRL 113

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 263 QGKVAVTIV-KANNL-------KNMEMIGKS--DPYAVVHIKP----LFKVKTNVVDNNL 308
            G+V ++I  K   L       KN+ ++  S  DPY   ++ P      K KT VV    
Sbjct: 1   GGQVKLSISYKNGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTR 60

Query: 309 NPVWNQTF---ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE 360
           NP +N+      L  ED + + L   V+  D + +++ LG V +PL  L+     E
Sbjct: 61  NPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE 116

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|222746 pfam14429, DOCK-C2, C2 domain in Dock180 and Zizimin proteins

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 19/115 (16%)

Query: 298 KVKTNVVDNNLNPVWNQTF--ELIAEDKETQSLIFEVFD----KDIGQDKRLGIVKLPLI 351
              ++V+ +N NPV+N     +L      +  L+F  +     +   ++K  G   LPL+
Sbjct: 60  SYYSSVLYHNKNPVFNDEIKIQLPLPLTPSHHLLFTFYHVSAKESKKKEKPFGFAWLPLM 119

Query: 352 D-------------LEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393
           D             + ++      L L PS     +  KK   +++ ++ ++ ++
Sbjct: 120 DDGTTIQDGEHTLPVYSENLPPNYLSLPPSAMEKNVDGKKPVFTVSTRLCSTVYT 174

The Dock180/Dock1 and Zizimin proteins are atypical GTP/GDP exchange factors for the small GTPases Rac and Cdc42 and are implicated cell-migration and phagocytosis. Across all Dock180 proteins, two regions are conserved: C-terminus termed CZH2 or DHR2 (or the Dedicator of cytokinesis) whereas CZH1/DHR1 contain a new family of the C2 domain. Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.9
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.86
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.84
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.83
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.83
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.83
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.83
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.83
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.83
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.82
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.81
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.81
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.81
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.79
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.79
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.79
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.79
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.79
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.79
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.78
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.78
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.76
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.76
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.75
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.75
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.75
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.74
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.74
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.74
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.74
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.74
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.73
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.73
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.73
PLN03008	868	Phospholipase D delta	99.73
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.72
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.72
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.72
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.7
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.69
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.69
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.69
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.68
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.68
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.67
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.67
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.67
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.67
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.66
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.66
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.65
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.65
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.65
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.65
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.65
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.64
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.63
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.63
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.63
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.63
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.62
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.62
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.62
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.61
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.58
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.57
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.55
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.5
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.44
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.42
PLN02270	808	phospholipase D alpha	99.35
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.34
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.33
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.31
PF10296	91	DUF2404: Putative integral membrane protein conser	99.31
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.29
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.2
PLN02223	537	phosphoinositide phospholipase C	99.14
PLN02952	599	phosphoinositide phospholipase C	99.12
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.06
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.06
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.98
PLN02230	598	phosphoinositide phospholipase C 4	98.95
PLN02352	758	phospholipase D epsilon	98.95
PLN02228	567	Phosphoinositide phospholipase C	98.95
PLN02222	581	phosphoinositide phospholipase C 2	98.91
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.86
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.79
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.79
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.65
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.42
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.41
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.34
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.2
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.13
KOG3532	1051	consensus Predicted protein kinase [General functi	98.04
PLN02964	644	phosphatidylserine decarboxylase	97.94
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.84
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.68
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.21
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.16
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.82
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.81
PF15627	156	CEP76-C2: CEP76 C2 domain	96.64
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.36
KOG1327	529	consensus Copine [Signal transduction mechanisms]	95.82
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.82
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.65
KOG1452	442	consensus Predicted Rho GTPase-activating protein	95.52
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.48
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.2
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.0
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.46
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.2
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.09
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	90.17
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	89.82
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.38
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	89.04
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	88.74
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	87.55
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	87.26
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	85.71
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	82.37

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=1.5e-51  Score=423.22  Aligned_cols=318  Identities=31%  Similarity=0.505  Sum_probs=282.3

Q ss_pred             CCCcchHHHHHHHHhHhhhHHHHHHHHHHHhHHHHHHhcCCCCcceEEEeEEecCCCCCeeeeEEEEE-cCCCeEEEEEE
Q 015915           65 PVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQS-LKQGQITMDID  143 (398)
Q Consensus        65 ~d~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~l~~~l~~~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~-~~~~~~~ld~~  143 (398)
                      .|+|++||||.+|+++||.+++.+++.+.+++|+.|.++.|+||+.+.+.+||||++||||.+||.|+ .+.|.+.||++
T Consensus       218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~  297 (1227)
T COG5038         218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD  297 (1227)
T ss_pred             cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence            46899999999999999999999999999999999999999999999999999999999999999876 57789999999


Q ss_pred             EEEeC---------------CCcEEEEEEee--ee-eeEEEEEEEEEEEEEEEEEEEecCCCCccceEEEEeecCCcceE
Q 015915          144 FRWGG---------------DPSIILGVEAA--MV-ASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRI  205 (398)
Q Consensus       144 ~~~~~---------------~~~i~l~~~~~--~~-~~~~v~v~~l~~~g~~Rv~~~l~~~~P~~~~~~vsf~~~P~p~i  205 (398)
                      ++|+.               ++.|.|.++.+  ++ .++||.|+++.|.|++|+++.|++..|++..++++|++.  |+|
T Consensus       298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~--Pe~  375 (1227)
T COG5038         298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEV--PEF  375 (1227)
T ss_pred             eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecC--cce
Confidence            99985               34567776664  33 789999999999999999999999999999999999997  899


Q ss_pred             EEEEeecCc-----CccccccHHHHHHHHHHHHHhhhcCCCCeeeeecCCCCcCccccccCCCcEEEEEEeeeeecccCc
Q 015915          206 DYTLKAVGG-----SLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNME  280 (398)
Q Consensus       206 d~~~~~~g~-----~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~ipl~~~~~d~~~~~~~~~g~L~V~V~~a~~L~~~d  280 (398)
                      ||.++++|+     |+++||||+.||+++|..+++.++++|+.+++++...-...   ...+.|++.|+|.+|++|...+
T Consensus       376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~---s~~aIGVv~vkI~sa~~lk~~d  452 (1227)
T COG5038         376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD---SGTAIGVVEVKIKSAEGLKKSD  452 (1227)
T ss_pred             eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc---cCCeeEEEEEEEeeccCccccc
Confidence            999999984     57899999999999999999999999999999986321111   2357899999999999999988


Q ss_pred             --CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECccccccc
Q 015915          281 --MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADT  357 (398)
Q Consensus       281 --~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~  357 (398)
                        ..+..|||+++........||+++++++||+|||+|++.+... ++.|.++|||.+ ..+|+.+|++.++|..+....
T Consensus       453 ~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~  531 (1227)
T COG5038         453 STINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNP  531 (1227)
T ss_pred             ccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhcc
Confidence              5799999999998765567999999999999999999999864 679999999987 999999999999999998876


Q ss_pred             ccce-EEecccccccccccCCCcccEEEEEEeeeeeecccCC
Q 015915          358 PKEA-ELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLFK  398 (398)
Q Consensus       358 ~~~~-~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~~~  398 (398)
                      .... ...+        ..+.+..|+++..+.  |+|+..+|
T Consensus       532 ~~~ne~~e~--------~~~~k~vGrL~yDl~--ffp~~e~k  563 (1227)
T COG5038         532 VKKNELYEF--------LRNTKNVGRLTYDLR--FFPVIEDK  563 (1227)
T ss_pred             ccccceeee--------eccCccceEEEEeee--eecccCCc
Confidence            6543 2222        266788999999999  99998876

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.90  E-value=6.8e-23  Score=167.85  Aligned_cols=118  Identities=21%  Similarity=0.379  Sum_probs=102.7

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCC-CCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCC
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQD  340 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d  340 (398)
                      .|+|+|+|++|++++..+ .|++||||++.+++ .+++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+| +++|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD   77 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence            489999999999998877 79999999999988 5779999865 89999999999999764 468999999999 8999


Q ss_pred             ceeEEEEEECc-ccccccccceEEecccccccccccCCCcccEEEEEEeeee
Q 015915          341 KRLGIVKLPLI-DLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASK  391 (398)
Q Consensus       341 ~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y  391 (398)
                      ++||++.+++. .+..+...+.|++|.+.      ...+..|+|+++++  |
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~--y  121 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFS--Y  121 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEe--C
Confidence            99999999996 57777678899999652      33457899999999  7

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.86  E-value=2.9e-21  Score=160.40  Aligned_cols=118  Identities=29%  Similarity=0.477  Sum_probs=101.6

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeec-----CCCCeEEEEEEEcc-CCC
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-----KETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-----~~~~~L~v~v~d~d-~~~  339 (398)
                      ++|+|++|+||+.++..|.+||||++++++ .+++|+++++++||+|||+|.|.+..     .....|.++|||++ .++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            579999999999999889999999999987 67899999999999999999999976     35678999999999 889


Q ss_pred             CceeEEEEEECcccc--cccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          340 DKRLGIVKLPLIDLE--ADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       340 d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      |++||++.++++++.  .+.....|++|....    ....+.+|+|+++++
T Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~  126 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ  126 (126)
T ss_pred             CceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence            999999999999987  455677999997421    133456899999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=4.9e-21  Score=157.92  Aligned_cols=119  Identities=32%  Similarity=0.458  Sum_probs=106.8

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG  344 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG  344 (398)
                      |+|+|++|++|+..|..|.+||||++++++...++|+++.++.||.|||+|.|.+.+. .+.+.++|||+| .++|++||
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceE
Confidence            7899999999999998899999999999876678999999999999999999998764 578999999999 88999999


Q ss_pred             EEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          345 IVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       345 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      .+.++++++..+...+.|++|...      .+.+..|+|++.++  |.|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~--~~~  121 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVT--LTP  121 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEE--ECC
Confidence            999999999988888899998642      33467899999999  877

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.86  E-value=6e-21  Score=156.62  Aligned_cols=115  Identities=23%  Similarity=0.346  Sum_probs=101.3

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK  341 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~  341 (398)
                      |.|+|+|++|++|++.+..+.+||||++++++ .+++|+++. ++.||.|||+|.|.+.....+.|.++|||++ .+ |+
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~   78 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PD   78 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Cc
Confidence            78999999999999999999999999999987 678888875 5799999999999998766678999999999 55 99


Q ss_pred             eeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          342 RLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +||++.++++++..+.....|++|..        +++..|+|+++++
T Consensus        79 ~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~  117 (118)
T cd08681          79 LIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELT  117 (118)
T ss_pred             ceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEE
Confidence            99999999999877767788998853        3457899999998

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=3.1e-20  Score=153.11  Aligned_cols=115  Identities=28%  Similarity=0.403  Sum_probs=99.1

Q ss_pred             EEEEEEeeeee---cccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C---
Q 015915          265 KVAVTIVKANN---LKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I---  337 (398)
Q Consensus       265 ~L~V~V~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~---  337 (398)
                      .|+|+|++|++   |+.+|..|.+||||++++++ ++.||+++++++||+|||+|.|.+.+. ...|.++|||++ .   
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~   78 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWK   78 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccc
Confidence            38999999999   88899999999999999987 578999999999999999999999775 458999999999 5   


Q ss_pred             ---CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEE
Q 015915          338 ---GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITV  385 (398)
Q Consensus       338 ---~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l  385 (398)
                         .+|++||++.++++++..+...+.|++|...    .....+..|+|+.
T Consensus        79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~----~~~~~~~~g~l~~  125 (126)
T cd08379          79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL----NPSGVKKMGELEC  125 (126)
T ss_pred             ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC----CCCCccCCcEEEe
Confidence               3899999999999999988888899998642    1233556788764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=6.3e-20  Score=150.07  Aligned_cols=114  Identities=32%  Similarity=0.465  Sum_probs=102.8

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL  343 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l  343 (398)
                      +++|+|++|++|+..+..+.+||||++++++ .+.+|+++++|.||.|||+|.|.+.+...+.|.++|||++ .++|++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence            4789999999999999889999999999987 6789999999999999999999998766789999999999 8899999


Q ss_pred             EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      |++.++++++..+...+.|++|.+           ..|+|++.+.  |.
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~-----------~~G~~~~~~~--~~  115 (116)
T cd08376          80 GRCEIDLSALPREQTHSLELELED-----------GEGSLLLLLT--LT  115 (116)
T ss_pred             EEEEEeHHHCCCCCceEEEEEccC-----------CCcEEEEEEE--ec
Confidence            999999999998888889998842           2599999988  74

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.83  E-value=1.3e-19  Score=150.37  Aligned_cols=121  Identities=17%  Similarity=0.294  Sum_probs=102.3

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK  341 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~  341 (398)
                      ...|+|+|++|+||+..   +.+||||++++++....+|++. ++.||.|||+|.|.+.......+++.|||++ .++|+
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            45799999999999875   4789999999987556788874 6899999999999876554468999999999 89999


Q ss_pred             eeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          342 RLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      +||.+.++++++..+...+.|+.|.+..    ..+.+..|+|+++++  |.+
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~--~~~  124 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRAR--YSH  124 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEE--EEc
Confidence            9999999999999888888999997531    124566899999999  976

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=5.3e-20  Score=153.03  Aligned_cols=120  Identities=24%  Similarity=0.305  Sum_probs=102.1

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC---CCeEEEEEEEcc-CC-C
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE---TQSLIFEVFDKD-IG-Q  339 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~---~~~L~v~v~d~d-~~-~  339 (398)
                      .|+|+|++|++|...+..|.+||||++++++ .+++|++++++.||.|||+|.|.+.++.   ...|.++|||++ .+ +
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            4899999999999999889999999999987 5789999999999999999999987532   357999999998 65 8


Q ss_pred             CceeEEEEEECcccc-cccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          340 DKRLGIVKLPLIDLE-ADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       340 d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      |++||++.++++++. .+.....|++|.+.     ...++.+|+|.+++.  +.
T Consensus        80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~~~--~~  126 (127)
T cd04022          80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKR-----GLFSRVRGEIGLKVY--IT  126 (127)
T ss_pred             CCeeeEEEEcHHHcCCCCCccceEeEeeeC-----CCCCCccEEEEEEEE--Ec
Confidence            999999999999998 45556789998642     123457999999998  64

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.83  E-value=2.6e-20  Score=156.11  Aligned_cols=98  Identities=33%  Similarity=0.548  Sum_probs=89.8

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      ...|.|+|+|.+|.+|..+|+.++|||||++.+++ ++.+|+++++++||+|||.|.|.+.++ +..|++.|||+| ++.
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS   80 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence            35799999999999999999889999999999998 689999999999999999999999985 679999999999 999


Q ss_pred             CceeEEEEEECcccccccccc
Q 015915          340 DKRLGIVKLPLIDLEADTPKE  360 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~~~  360 (398)
                      ||+||.|+|++..+.......
T Consensus        81 dD~mG~A~I~l~p~~~~~~~~  101 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQKMD  101 (168)
T ss_pred             ccccceeeeccHHHHHHhhhh
Confidence            999999999999987654433

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.83  E-value=8.4e-20  Score=150.32  Aligned_cols=117  Identities=22%  Similarity=0.330  Sum_probs=101.4

Q ss_pred             EEEEEeeeeecccCc-CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915          266 VAVTIVKANNLKNME-MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL  343 (398)
Q Consensus       266 L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l  343 (398)
                      |+|+|.+|+||+..+ ..|.+||||.++++....++|+++++|+||.|||+|.|.+.+. ...|.+.|||++ .++|+++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i   80 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI   80 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence            679999999999874 4578999999999875578999999999999999999999753 468999999999 8899999


Q ss_pred             EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      |.+.++++++..+...+.|++|.+.     ...++.+|+|+++++
T Consensus        81 G~~~i~l~~l~~~~~~~~w~~L~~~-----~~~~~~~G~i~l~~~  120 (121)
T cd08401          81 GKVAIKKEDLHKYYGKDTWFPLQPV-----DADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEEHHHccCCCCcEeeEEEEcc-----CCCCcccEEEEEEEE
Confidence            9999999999887778899999753     133446899999987

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.83  E-value=9.7e-20  Score=150.60  Aligned_cols=121  Identities=27%  Similarity=0.450  Sum_probs=105.1

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL  343 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l  343 (398)
                      .|+|+|++|++|+.++..+.+||||++++++ ...+|++++++.||.|||+|.|.+.......|.|+|||++ .+++++|
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            3899999999999999888999999999986 5789999999999999999999998766678999999999 8899999


Q ss_pred             EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEE
Q 015915          344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV  387 (398)
Q Consensus       344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l  387 (398)
                      |++.++++++..+...+.|+.|.+.. ..+...++..|.|++.+
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~~-~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          80 GKVVFSIQTLQQAKQEEGWFRLLPDP-RAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEHHHcccCCCCCCEEECCCCC-CCCccccCceEEEEEEe
Confidence            99999999998777778899987643 22334567789999876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.83  E-value=1.3e-19  Score=152.20  Aligned_cols=119  Identities=34%  Similarity=0.551  Sum_probs=100.9

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      ...|.|+|+|++|++|++.+..|.+||||+++++. ..++|+++++|.||.|||+|.|.+.+...+.+.++|||+| .++
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            56899999999999999999899999999999986 6799999999999999999999998766778999999999 889


Q ss_pred             CceeEEEEEECccccccc--ccceE-EecccccccccccCCCcccEEEEEEe
Q 015915          340 DKRLGIVKLPLIDLEADT--PKEAE-LRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~--~~~~~-~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      |++||++.+++.++....  ....+ ..+        ...++.+|+|++++.
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~--------~~~~~~~g~i~l~~~  134 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRL--------LLHEVPTGEVVVKLD  134 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEe--------ccccccceeEEEEEE
Confidence            999999999999998622  12211 111        123567899999998

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=1.1e-19  Score=151.14  Aligned_cols=121  Identities=28%  Similarity=0.410  Sum_probs=103.8

Q ss_pred             cEEEEEEeeeeecccCcC--CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCC
Q 015915          264 GKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQD  340 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d  340 (398)
                      |+|+|+|++|++|+..+.  .+.+||||+++++. .+.+|++++++.||.|||+|.|.+.+...+.|.++|||++ .++|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            789999999999999888  88999999999986 5789999999999999999999998766789999999999 8899


Q ss_pred             ceeEEEEEECccccc---ccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          341 KRLGIVKLPLIDLEA---DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       341 ~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      ++||++.++++++..   ......|+.|.+..   ...+...+|+|+++++
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~  127 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFS  127 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEE
Confidence            999999999999873   23357899886531   1234557999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.83  E-value=1.5e-19  Score=155.65  Aligned_cols=123  Identities=33%  Similarity=0.463  Sum_probs=104.1

Q ss_pred             CcEEEEEEeeeeecccCc------------------------------CCCCCCcEEEEEEcceeeEeccccCCCCCcee
Q 015915          263 QGKVAVTIVKANNLKNME------------------------------MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW  312 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~W  312 (398)
                      .|+|+|+|.+|++|+++|                              ..|.+||||++++++....||++++++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            699999999999999987                              34678999999998755679999999999999


Q ss_pred             ccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          313 NQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       313 ne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      ||+|.|.+.+. .+.|.++|||+|..++++||++.++++++..+...+.|++|....    .+..+..|+|+++++  |+
T Consensus        86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~--f~  158 (158)
T cd04015          86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQ--FT  158 (158)
T ss_pred             ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEE--EC
Confidence            99999998764 568999999999335689999999999999888888999987531    123345789999999  84

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.4e-19  Score=154.24  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=104.5

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCC-CCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      .|+|+|++|++|+.++..|.+||||++++++ +..+|+++.+ ++||.|||+|.|.+.++....+.++|||++ .++|++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~   79 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEP   79 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCe
Confidence            3799999999999999999999999999998 6889998876 699999999999997766678999999999 789999


Q ss_pred             eEEEEEECcccccc----cccceEEeccccccc-ccccCCCcccEEEEEEeeeeee
Q 015915          343 LGIVKLPLIDLEAD----TPKEAELRLLPSLDM-LKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       343 lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~-~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      ||++.++++++..+    ...+.|++|...... ...+..+.+|+|+++++  |.+
T Consensus        80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~--~~~  133 (150)
T cd04019          80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLC--LDG  133 (150)
T ss_pred             EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEE--ecC
Confidence            99999999998653    335789999764210 01133466899999999  754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=7.7e-20  Score=147.61  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=91.5

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc---eeeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI  329 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~  329 (398)
                      ++..|.+..|.|+|+|++|++|+ .  .|.+||||++++.+   ..+.+|+++++|+||.|||+|.|.+..  .....|.
T Consensus         5 fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~   81 (118)
T cd08677           5 YSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLT   81 (118)
T ss_pred             EEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEE
Confidence            45567788999999999999998 3  46799999999964   246799999999999999999999864  3456899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEe
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELR  364 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~  364 (398)
                      ++|||+| ++++++||++.++++++..+.+.++|..
T Consensus        82 ~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~  117 (118)
T cd08677          82 LTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD  117 (118)
T ss_pred             EEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence            9999999 9999999999999999877666667754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.82  E-value=1.6e-19  Score=149.36  Aligned_cols=120  Identities=29%  Similarity=0.426  Sum_probs=101.7

Q ss_pred             CcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcc-eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          263 QGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      .|.|+|+|++|++|+..+ ..+.+||||++++++ ...++|++++++.||.|||+|.|.+.. ..+.|.++|||++ .++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~   79 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK   79 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence            388999999999999765 346799999999987 468999999999999999999999874 5779999999999 889


Q ss_pred             CceeEEEEEECcccccccccc-eEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          340 DKRLGIVKLPLIDLEADTPKE-AELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      |++||.+.+++.++....... .+..+.        .+++.+|+|+++++  |.|
T Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~--~~p  124 (124)
T cd04044          80 DKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLR--FFP  124 (124)
T ss_pred             CceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEE--eCC
Confidence            999999999999998766553 233221        44567899999999  987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.82  E-value=2.2e-19  Score=149.13  Aligned_cols=121  Identities=26%  Similarity=0.417  Sum_probs=103.4

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcc-eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL  343 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l  343 (398)
                      |.|+|++|++|+.  ..|.+||||+++++. ..+++|+++++|.||.|||+|.|.+.. ..+.|.++|||++ .++|++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence            5799999999987  678999999999974 356899999999999999999999864 4678999999999 8899999


Q ss_pred             EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      |++.++++++..+.....|++|.+..    ..+....|+|++++.  |.+-.
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~--~~~~~  123 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFL--FMEPA  123 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEE--Eeccc
Confidence            99999999999877778899886531    124567999999999  97654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.81  E-value=1.9e-19  Score=147.20  Aligned_cols=103  Identities=30%  Similarity=0.357  Sum_probs=89.4

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEc----c--eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEEEEEc
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIK----P--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEVFDK  335 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~----~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~v~d~  335 (398)
                      .|+|+|++|++|+..+ .|.+||||++++.    +  .++++|+++++|+||+|||+|.|.+..   +....|.+.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999988 4999999999973    1  235689999999999999999999974   2345799999999


Q ss_pred             c-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      | .++|++||++.++++++..++....|++|.+.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            9 78899999999999999998888899998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=2.6e-19  Score=147.10  Aligned_cols=112  Identities=25%  Similarity=0.471  Sum_probs=98.8

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      |+|+|++|++|++.+..+.+||||++++.+  ..+++|+++++|.||.|||+|.|.+.....+.|.|+|||+| . +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999863  35689999999999999999999997665668999999999 7 9999


Q ss_pred             eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      ||++.++++++..+.....|++|.+          .+.|++++++.
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~----------~~~g~l~~~~~  116 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNP----------QGKEELEVEFL  116 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCC----------CCCceEEEEEE
Confidence            9999999999998888889998742          24788888876

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=4e-19  Score=146.26  Aligned_cols=112  Identities=28%  Similarity=0.389  Sum_probs=96.8

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeEE
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGI  345 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~  345 (398)
                      |+|+|++|++|+..    .+||||++++++ .+.+|++++++.||+|||+|.|.+.+.....|.++|||+|..++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence            78999999999877    789999999987 6889999999999999999999987766789999999999338999999


Q ss_pred             EEEECccccccc-----ccceEEecccccccccccCCCcccEEEEEEe
Q 015915          346 VKLPLIDLEADT-----PKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       346 ~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +.++++++....     ....|++|.+.      .+.+.+|+|++++.
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~  118 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVW  118 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEE
Confidence            999999987533     24589998753      33567899999998

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.81  E-value=5.5e-19  Score=145.47  Aligned_cols=113  Identities=30%  Similarity=0.526  Sum_probs=100.6

Q ss_pred             cEEEEEEeeeeecccCcC------CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-
Q 015915          264 GKVAVTIVKANNLKNMEM------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-  336 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-  336 (398)
                      |+|+|+|++|++|+..+.      .|.+||||++++++ ..++|++++++.||.|||+|.|.+.+...+.|.++|||++ 
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            789999999999998874      36899999999987 6899999999999999999999998766789999999999 


Q ss_pred             CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          337 IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      . +|++||++.++++++..++..+.|++|..          ..+|+|+++++
T Consensus        80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----------~~~G~~~~~~~  120 (121)
T cd08391          80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLED----------VKSGRLHLKLE  120 (121)
T ss_pred             C-CCCcEEEEEEEHHHhcccCccceEEECcC----------CCCceEEEEEe
Confidence            6 99999999999999988777789998742          25799999887

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.81  E-value=9.6e-19  Score=145.20  Aligned_cols=124  Identities=20%  Similarity=0.269  Sum_probs=103.3

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCc
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDK  341 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~  341 (398)
                      |+++|+|+|++|++|...+..|.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ...|.++|||++..+|+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~   78 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE   78 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            4789999999999999999889999999999987 578999999999999999999988764 67899999999944589


Q ss_pred             eeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          342 RLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      +||.+.+++++....  ...+++|...   ....+++..|+|.+++.  +.|-
T Consensus        79 ~lG~~~~~l~~~~~~--~~~~~~l~~~---~~~~~~~~~G~i~~~~~--~~~~  124 (126)
T cd04046          79 FLGQATLSADPNDSQ--TLRTLPLRKR---GRDAAGEVPGTISVKVT--SSDD  124 (126)
T ss_pred             ceEEEEEecccCCCc--CceEEEcccC---CCCCCCCCCCEEEEEEE--Eccc
Confidence            999999999886533  3455666432   12366778999999999  7763

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=3.6e-19  Score=146.79  Aligned_cols=102  Identities=28%  Similarity=0.406  Sum_probs=90.9

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEe-e--cCCCCeEEEEEEEc
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA-E--DKETQSLIFEVFDK  335 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v-~--~~~~~~L~v~v~d~  335 (398)
                      .+.|+|+|++|++|+.++ .+.+||||++++.+    ..+++|++++++.||.|||+|.|.+ .  +.....|.++|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            789999999999999999 89999999999974    2468999999999999999999987 2  33567899999999


Q ss_pred             c-CCCCceeEEEEEECcccccccccceEEec
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      | .+++++||++.++++++..+.....|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9 88999999999999999987777889876

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=1.9e-18  Score=141.92  Aligned_cols=116  Identities=27%  Similarity=0.492  Sum_probs=100.5

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      |.|+|+|++|++|+..+..+.+||||++++++ ...+|++++++.||.|||+|.|.+.+. ...+.++|||++ .+++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~   78 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEF   78 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCce
Confidence            78999999999999999889999999999987 468999999999999999999998763 578999999999 789999


Q ss_pred             eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      ||++.+++.++..+.  ..|+.|...     ....+..|+|.+++.
T Consensus        79 iG~~~~~l~~~~~~~--~~~~~l~~~-----~~~~~~~G~i~l~~~  117 (119)
T cd08377          79 LGKVAIPLLSIKNGE--RKWYALKDK-----KLRTRAKGSILLEMD  117 (119)
T ss_pred             eeEEEEEHHHCCCCC--ceEEECccc-----CCCCceeeEEEEEEE
Confidence            999999999987543  568887542     234557999999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.79  E-value=1.4e-18  Score=143.26  Aligned_cols=117  Identities=25%  Similarity=0.445  Sum_probs=100.1

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG  344 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG  344 (398)
                      |.|+|++|++|++++..|.+||||++++++....+|+++++++||.|||.|.|.+.+ ..+.|.++|||++ .++|+++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG   80 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIG   80 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999999999999999987556799999999999999999999865 3478999999999 88999999


Q ss_pred             EEEEECccccccc-ccceEEecccccccccccCCCcccEEEEEEe
Q 015915          345 IVKLPLIDLEADT-PKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       345 ~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      ++.++++++.... ..+.|++|.+.     ..++...|+|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~  120 (121)
T cd04054          81 KVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence            9999999887533 36789998642     234456899998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.79  E-value=1.2e-18  Score=145.94  Aligned_cols=120  Identities=28%  Similarity=0.529  Sum_probs=101.0

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcce------eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I  337 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~  337 (398)
                      .|+|+|++|++|+..+..|.+||||++++.+.      .+.+|+++++|.||.|||+|.|.+... ...|.++|||++ .
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            37999999999999998899999999999753      256899999999999999999998753 568999999999 8


Q ss_pred             CCCceeEEEEEECcccccccc------cceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          338 GQDKRLGIVKLPLIDLEADTP------KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      ++|++||++.++++++..+..      ...|++|.+.     ...++..|+|+++++  |.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~--~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMA--YL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEe--eC
Confidence            899999999999999886543      3478887642     234567999999999  73

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=1.4e-18  Score=146.68  Aligned_cols=106  Identities=21%  Similarity=0.329  Sum_probs=93.4

Q ss_pred             CCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEE-Ec
Q 015915          262 PQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVF-DK  335 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~-d~  335 (398)
                      ..|.|+|+|++|+||...+ ..|.+||||++++.+.    .++||+++++|+||+|||+|.|.+. ..+..|.++|| |+
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~  105 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY  105 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence            4789999999999999864 5688999999999652    3689999999999999999999998 56789999999 57


Q ss_pred             c-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      + .+++++||++.++|+++..+.....|++|.+.
T Consensus       106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            7 88999999999999999777777899999764

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.79  E-value=1e-18  Score=144.81  Aligned_cols=110  Identities=25%  Similarity=0.334  Sum_probs=94.9

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L  328 (398)
                      +..|.+..+.|+|+|++|+||+.++.. |.+||||++++.+    ..+++|+++++++||.|||+|.|.+..  .....|
T Consensus         7 sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L   86 (125)
T cd08393           7 ALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVL   86 (125)
T ss_pred             EEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEE
Confidence            334556778999999999999999875 8999999999964    235799999999999999999999863  345689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      .++|||+| .+++++||++.++|.++........|++|
T Consensus        87 ~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          87 NLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             EEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            99999999 89999999999999999877777889876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.79  E-value=1e-18  Score=144.69  Aligned_cols=111  Identities=23%  Similarity=0.427  Sum_probs=97.2

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~  331 (398)
                      +..|.++.|.|+|+|++|++|+.++..|.+||||++++.+  ...++|++++++.||.|||+|.|.+...  ....|.++
T Consensus         8 sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~   87 (124)
T cd08387           8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVL   87 (124)
T ss_pred             EEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence            3345567899999999999999999889999999999953  3568999999999999999999998643  35689999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      |||++ .++|++||++.++++++..++..+.|++|.
T Consensus        88 V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          88 LYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             EEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            99999 889999999999999998877888999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.78  E-value=1.5e-18  Score=147.27  Aligned_cols=121  Identities=26%  Similarity=0.375  Sum_probs=96.7

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEee---------------cCCC
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAE---------------DKET  325 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~---------------~~~~  325 (398)
                      .|+|+|++|++|..  ..|.+||||++++.+.    .+++|+++++|+||.|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37999999999988  4689999999999752    4679999999999999999999985               1223


Q ss_pred             CeEEEEEEEcc-CCCCceeEEEEEECcccccc-cccceEEeccccccccc-----ccCCCcccEEEEEE
Q 015915          326 QSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD-TPKEAELRLLPSLDMLK-----IKDKKDRGSITVKV  387 (398)
Q Consensus       326 ~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~-----~~~~~~~G~I~l~l  387 (398)
                      ..|.+.|||++ .++|++||++.+++.++..+ .....|++|.+..+...     ..+....|++.+++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            57899999999 88999999999999999886 56788999976533221     12233468887765

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=1.7e-18  Score=143.45  Aligned_cols=110  Identities=29%  Similarity=0.380  Sum_probs=95.3

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcC-CCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      +..|.+..|.|.|+|++|+||+..+. .|.+||||++++.+    ..++||+++++++||.|||+|.|.+...  ....|
T Consensus         7 sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L   86 (125)
T cd04029           7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTL   86 (125)
T ss_pred             EEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEE
Confidence            34456789999999999999998875 48899999999964    2357999999999999999999998642  35689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      .++|||+| .+++++||++.+++.++......+.|++|
T Consensus        87 ~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          87 QLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            99999999 89999999999999999888888899886

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.78  E-value=5.2e-18  Score=141.05  Aligned_cols=116  Identities=32%  Similarity=0.463  Sum_probs=100.6

Q ss_pred             EeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-CCCCceeEEE
Q 015915          270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-IGQDKRLGIV  346 (398)
Q Consensus       270 V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~~~d~~lG~~  346 (398)
                      |++|++|+.  ..|.+||||++++++ .+++|++++++.||.|||+|.|.+...  ..+.|.++|||++ .++|++||++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~-~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~   78 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA   78 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC-EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence            689999988  678999999999987 578999999999999999999999653  4678999999999 8899999999


Q ss_pred             EEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915          347 KLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       347 ~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                      .++++++..+.....|++|...      .+...+|+|+++++  |.|..-
T Consensus        79 ~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~--~~~~~~  120 (127)
T cd08373          79 TVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVS--YQPPDG  120 (127)
T ss_pred             EEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEE--EeCCCC
Confidence            9999999988778889988642      33345799999999  999764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.78  E-value=3.5e-18  Score=141.19  Aligned_cols=118  Identities=25%  Similarity=0.392  Sum_probs=97.9

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC--Cce
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ--DKR  342 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~--d~~  342 (398)
                      |+|+|++|++|+..+..+.+||||++++++...++|+++++++||.|||+|.|.+..  .+.|.++|||++ .++  |++
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~   79 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF   79 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence            789999999999999889999999999975568899999999999999999999965  579999999999 654  589


Q ss_pred             eEEEEEECcccccccc-cceEEecccccccccccCCCcccEEEEEEe
Q 015915          343 LGIVKLPLIDLEADTP-KEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      ||++.++++++..... ...|+++...   .....+...|+|.++++
T Consensus        80 lG~~~i~l~~l~~~~~~~~~~~~l~~~---~~~~~~~~~G~v~~~~~  123 (123)
T cd08382          80 LGCVRIRANAVLPLKDTGYQRLDLRKL---KKSDNLSVRGKIVVSLS  123 (123)
T ss_pred             EeEEEEEHHHccccCCCccceeEeecC---CCCCCceEeeEEEEEeC
Confidence            9999999999876443 3568877542   11234556899988763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.77  E-value=6.4e-18  Score=141.44  Aligned_cols=115  Identities=23%  Similarity=0.371  Sum_probs=100.3

Q ss_pred             CcEEEEEEeeeeecccCcCC----------CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMI----------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v  332 (398)
                      .|.|+|+|++|++|...+..          |.+||||++++++....+|++++++.||.|||+|.|.+.+  ...+.+.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v   80 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTV   80 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEE
Confidence            58899999999999988752          6799999999997656799999999999999999999973  46899999


Q ss_pred             EEcc-CCCCceeEEEEEECccccc--ccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEA--DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      ||++ .++|+++|++.++++++..  +...+.|++|.            +.|+|+++++  |..
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~--~~~  130 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIE--LKG  130 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEE--Eec
Confidence            9999 8899999999999999987  45678899873            3699999999  764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=6.3e-18  Score=139.90  Aligned_cols=109  Identities=31%  Similarity=0.468  Sum_probs=95.3

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEE
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVF  333 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~  333 (398)
                      .|....+.|+|+|++|++|+..+..|.+||||++++.+  ...++|++++++.||.|||+|.|.+...  ....|.++||
T Consensus        10 ~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~   89 (124)
T cd08385          10 DYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY   89 (124)
T ss_pred             EEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence            34567899999999999999999889999999999864  2467999999999999999999998642  3468999999


Q ss_pred             Ecc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      |+| .++|++||++.++++++..+...+.|++|.
T Consensus        90 d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          90 DFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             eCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            999 889999999999999998877788999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.76  E-value=1.6e-17  Score=139.59  Aligned_cols=120  Identities=25%  Similarity=0.413  Sum_probs=98.7

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC---------CCCeEEEEEEEc
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK---------ETQSLIFEVFDK  335 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------~~~~L~v~v~d~  335 (398)
                      .|+|+|.+|++|+.+|..|.+||||+++++. .+++|+++++|+||.|||+|.|.+...         ....+.++|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5899999999999999999999999999986 688999999999999999999975321         125789999999


Q ss_pred             c-CCCCceeEEEEE-ECccccc---ccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          336 D-IGQDKRLGIVKL-PLIDLEA---DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       336 d-~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      | .++|++||++.+ ++..+..   ......|++|.+        .+...|+|.+++.  +.|.+
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~--~~~~~  135 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFE--LIEVT  135 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeE--EEEeC
Confidence            9 889999999987 4444432   345678998853        2457899999999  88753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.76  E-value=5.6e-18  Score=136.41  Aligned_cols=94  Identities=22%  Similarity=0.365  Sum_probs=82.2

Q ss_pred             cEEEEEEeeeeecccCcCC----CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC-CCeEEEEEEEcc-C
Q 015915          264 GKVAVTIVKANNLKNMEMI----GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVFDKD-I  337 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~L~v~v~d~d-~  337 (398)
                      |+|.|+|++|++|+..+..    +.+||||+++++. .++||+++++++||+|||+|.|.+.+.. ...|.++|||+| .
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            7899999999999987642    3589999999986 5789999999999999999999986533 347999999999 8


Q ss_pred             CCCceeEEEEEECcccccccc
Q 015915          338 GQDKRLGIVKLPLIDLEADTP  358 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~  358 (398)
                      ++|++||++.++|+++..+..
T Consensus        80 ~~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          80 SFNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCCcceEEEEEEHHHHHhhCC
Confidence            999999999999999987543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.76  E-value=6.4e-18  Score=140.29  Aligned_cols=111  Identities=25%  Similarity=0.297  Sum_probs=93.3

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCCe
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS  327 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~  327 (398)
                      ++..|....+.|.|+|++|+||+.++.. |.+||||++++.+.    .++||+++++++||+|||+|.|.+...  ....
T Consensus         6 ~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~   85 (128)
T cd08392           6 FALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQ   85 (128)
T ss_pred             EEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcE
Confidence            3444567789999999999999999874 99999999999652    367999999999999999999998542  3568


Q ss_pred             EEEEEEEcc-CCCCceeEEEEEECccccccc---ccceEEec
Q 015915          328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADT---PKEAELRL  365 (398)
Q Consensus       328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L  365 (398)
                      |.+.|||++ .+++++||++.++|+++....   ....|++|
T Consensus        86 L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          86 LQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             EEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            999999999 889999999999999996542   44578865

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=7.9e-18  Score=139.96  Aligned_cols=111  Identities=28%  Similarity=0.381  Sum_probs=91.9

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEE-ee--cCCCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AE--DKETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~-v~--~~~~~~L~  329 (398)
                      +..|....+.|+|+|++|+||+..+.. |.+||||++++.+  .++.||+++++++||.|||+|.|. +.  +.....|.
T Consensus         8 ~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~   87 (128)
T cd08388           8 SLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLH   87 (128)
T ss_pred             EEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEE
Confidence            334566789999999999999998876 8999999999864  346799999999999999999994 43  22345799


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccc--cccceEEecc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEAD--TPKEAELRLL  366 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~  366 (398)
                      ++|||+| .++|++||++.++++++...  +....|++++
T Consensus        88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          88 FAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             EEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            9999999 89999999999999999664  4456788764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=8.2e-18  Score=135.02  Aligned_cols=100  Identities=27%  Similarity=0.411  Sum_probs=89.7

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeE
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLG  344 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG  344 (398)
                      .|.|+|++|++|+..+..+.+||||++++++ ..++|++++++.||.|||+|.|.+.++..+.|.++|||++.  +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccE
Confidence            3789999999999998889999999999998 68899999999999999999999988777899999999875  88999


Q ss_pred             EEEEECccccccc--ccceEEeccc
Q 015915          345 IVKLPLIDLEADT--PKEAELRLLP  367 (398)
Q Consensus       345 ~~~i~l~~l~~~~--~~~~~~~L~~  367 (398)
                      ++.+++.++....  ..+.|++|..
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            9999999997654  4578998853

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=5.8e-18  Score=139.46  Aligned_cols=110  Identities=18%  Similarity=0.259  Sum_probs=93.5

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L  328 (398)
                      +..|.+..+.|.|+|++|+||+..+..|.+||||++++.+.     .+++|++++++.||+|||+|.|.+..  .....|
T Consensus         6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L   85 (124)
T cd08680           6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL   85 (124)
T ss_pred             EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence            44566788999999999999999988889999999998642     36899999999999999999999854  356789


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECccccccc-ccceEEec
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADT-PKEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L  365 (398)
                      .++|||++ .+++++||.+.++|+++.... ....|+.|
T Consensus        86 ~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          86 QVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999 889999999999999996543 35567653

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=2.2e-17  Score=137.26  Aligned_cols=114  Identities=27%  Similarity=0.468  Sum_probs=96.6

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C------
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I------  337 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~------  337 (398)
                      .|+|+|++|++|+..|..|.+||||++++++ ..++|++++++.||.|||+|.|.+..+ ...+.++|||+| .      
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~   79 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLK   79 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccc
Confidence            6899999999999999889999999999986 578999999999999999999988654 468999999998 3      


Q ss_pred             -----CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEE
Q 015915          338 -----GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV  387 (398)
Q Consensus       338 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l  387 (398)
                           ++|++||++.+++.++..  ..+.|+.|.+.     ......+|+|.+++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~-----~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKR-----TDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHccC--CCCeEEECccC-----CCCCcEeEEEEEEC
Confidence                 478999999999998753  45689988753     24445799999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=7.5e-18  Score=138.20  Aligned_cols=103  Identities=19%  Similarity=0.397  Sum_probs=88.2

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD  336 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d  336 (398)
                      ..+.|.|+|++|+||+.++ .|.+||||++++.+    ..++||++++++.||.|||+|.|.+... ....+.++|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            5789999999999999998 78999999999975    2356899999999999999999998542 2346889999999


Q ss_pred             -CC-CCceeEEEEEECcccccccccceEEec
Q 015915          337 -IG-QDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       337 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                       .. ++++||.+.+++.++..+...+.|+.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence             54 579999999999999876667788864

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.75  E-value=6.2e-18  Score=137.16  Aligned_cols=99  Identities=28%  Similarity=0.483  Sum_probs=85.3

Q ss_pred             cEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC---CCCeEEEEEEEcc-
Q 015915          264 GKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVFDKD-  336 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~L~v~v~d~d-  336 (398)
                      |+|+|+|++|++|+..+.. +.+||||++++.+  ...++|+++++|+||.|||+|.|.+...   ..+.|.++|||+| 
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999853  3468999999999999999999987653   3568999999999 


Q ss_pred             CCCCceeEEEEEECcccccccccceEEec
Q 015915          337 IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      .++|++||++.+++.++..   ...|+++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~  106 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGR  106 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence            8899999999999999973   2345544

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.75  E-value=1.5e-17  Score=138.15  Aligned_cols=110  Identities=28%  Similarity=0.347  Sum_probs=95.3

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~  329 (398)
                      +..|....+.|+|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+...  ....|.
T Consensus         8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~   87 (127)
T cd04030           8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLD   87 (127)
T ss_pred             EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEE
Confidence            3445567899999999999999999889999999999864    3578999999999999999999998542  346899


Q ss_pred             EEEEEcc-C--CCCceeEEEEEECcccccccccceEEec
Q 015915          330 FEVFDKD-I--GQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       330 v~v~d~d-~--~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      +.|||++ .  ++|++||++.++++++..+.....|++|
T Consensus        88 i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          88 VAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             EEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            9999998 4  6899999999999999887777889876

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=1.3e-17  Score=138.25  Aligned_cols=109  Identities=29%  Similarity=0.351  Sum_probs=91.4

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec---CCCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L  328 (398)
                      +..|....+.|+|+|++|++|+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+..   .....|
T Consensus         8 ~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l   87 (125)
T cd04031           8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTL   87 (125)
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEE
Confidence            3345567899999999999999999889999999999864    246799999999999999999998643   235689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      .++|||++ .++|++||++.+++++. .......|++|
T Consensus        88 ~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L  124 (125)
T cd04031          88 EVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPL  124 (125)
T ss_pred             EEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEEC
Confidence            99999999 88999999999999993 33345678876

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.75  E-value=1.6e-17  Score=137.71  Aligned_cols=111  Identities=28%  Similarity=0.410  Sum_probs=95.6

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIF  330 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v  330 (398)
                      +..|..+.+.|+|+|++|++|+..+..+.+||||++++.+  ..+.+|++++++.||.|||+|.|.+..   .....|.+
T Consensus         8 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~   87 (125)
T cd08386           8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYL   87 (125)
T ss_pred             EEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEE
Confidence            3345567899999999999999999889999999999842  356899999999999999999997532   23467999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      +|||+| .+++++||++.++++++..+...+.|+.|.
T Consensus        88 ~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          88 QVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             EEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            999999 889999999999999999887888999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.74  E-value=4.2e-17  Score=135.34  Aligned_cols=112  Identities=29%  Similarity=0.408  Sum_probs=95.8

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK  341 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~  341 (398)
                      .|+|+|++|++|+..+..+.+||||+++..+  ...++|++++++.||.|||+|.|.+.......|.++|||++ .++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5899999999999999889999999999764  24679999999999999999999998755678999999999 78999


Q ss_pred             eeEEEEEECcccccc---cccceEEecccccccccccCCCcccEEEEEEe
Q 015915          342 RLGIVKLPLIDLEAD---TPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +||++.++++++..+   ...+.|+.|.            +.|++++.++
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~  119 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVS  119 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEE
Confidence            999999999986543   3456788763            2589988888

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=1.2e-17  Score=138.02  Aligned_cols=110  Identities=31%  Similarity=0.418  Sum_probs=94.2

Q ss_pred             cccccCCCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      +..|....+.|+|+|++|+||+..+ ..+.+||||++++.+.    .+++|++++++.||.|||+|.|.+...  ....|
T Consensus         6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l   85 (123)
T cd08521           6 SLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTL   85 (123)
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEE
Confidence            3345567899999999999999988 6789999999998532    457999999999999999999988642  35689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      .++|||++ .+++++||++.++++++..+...+.|++|
T Consensus        86 ~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          86 QLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            99999999 88999999999999999877777888865

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.74  E-value=9.6e-18  Score=139.01  Aligned_cols=114  Identities=32%  Similarity=0.483  Sum_probs=97.6

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCC----CCeEEEEEEEcc-CC
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKE----TQSLIFEVFDKD-IG  338 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~----~~~L~v~v~d~d-~~  338 (398)
                      .|+|+|++|++|+..+..+.+||||++++++..+++|++.. ++.||.|||.|.|.+.+..    ...|.++|||++ .+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            47999999999999988899999999999875678999875 5899999999999997653    578999999999 78


Q ss_pred             CCceeEEEEEECccccccccc-----ceEEecccccccccccCCCcccEEEE
Q 015915          339 QDKRLGIVKLPLIDLEADTPK-----EAELRLLPSLDMLKIKDKKDRGSITV  385 (398)
Q Consensus       339 ~d~~lG~~~i~l~~l~~~~~~-----~~~~~L~~~~~~~~~~~~~~~G~I~l  385 (398)
                      +|++||++.+++.++..+...     ..|++|..       .+++..|.|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~-------~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR-------PSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC-------CCCCcCeEEeC
Confidence            999999999999999876543     57888754       45778899874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.74  E-value=2.5e-17  Score=134.36  Aligned_cols=112  Identities=32%  Similarity=0.492  Sum_probs=97.6

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG  344 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG  344 (398)
                      |+|+|++|++|+..+..+.+||||++++.+...++|+++.++.||.|||+|.|.+.+...+.+.++|||++ .+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            57899999999999888899999999997656689999999999999999999997756678999999999 88999999


Q ss_pred             EEEEECcccccccccceEEecccccccccccCCCcccEEE
Q 015915          345 IVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSIT  384 (398)
Q Consensus       345 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~  384 (398)
                      ++.+++.++..+...+.|++|.+       .++...|.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~  113 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF  113 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence            99999999988777888998864       4455566664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.74  E-value=1.9e-17  Score=136.98  Aligned_cols=104  Identities=27%  Similarity=0.553  Sum_probs=92.7

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCC-CCCceeccEEEEEeecC---CCCeEEEEEEEcc-CC
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDK---ETQSLIFEVFDKD-IG  338 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~---~~~~L~v~v~d~d-~~  338 (398)
                      |.|+|+|++|++|++.+..+.+||||++++++ ..++|++.++ +.||.|||+|.|.+...   ..+.|.|+|||++ .+
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   79 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS   79 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence            78999999999999998889999999999987 4678888774 89999999999999875   2568999999999 88


Q ss_pred             CCceeEEEEEECcccccccccceEEecccc
Q 015915          339 QDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       339 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      +|++||++.++++++..++..+.|+.|.+.
T Consensus        80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            999999999999999988888899988653

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.73  E-value=2.1e-17  Score=133.81  Aligned_cols=100  Identities=26%  Similarity=0.430  Sum_probs=87.9

Q ss_pred             EEEEEeeeeecccCcC-CCCCCcEEEEEEcceeeEeccccCCCCCcee-ccEEEEEeecC--CCCeEEEEEEEcc-CCCC
Q 015915          266 VAVTIVKANNLKNMEM-IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW-NQTFELIAEDK--ETQSLIFEVFDKD-IGQD  340 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~W-ne~f~~~v~~~--~~~~L~v~v~d~d-~~~d  340 (398)
                      |.|+|++|++|+.++. .|.+||||++++++ .++||+++++++||.| ||+|.|.+...  ..+.|.++|||++ .++|
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~   79 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN   79 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence            5799999999999884 68899999999987 7899999999999999 99999998753  2468999999999 8899


Q ss_pred             ceeEEEEEECcccccc---cccceEEecc
Q 015915          341 KRLGIVKLPLIDLEAD---TPKEAELRLL  366 (398)
Q Consensus       341 ~~lG~~~i~l~~l~~~---~~~~~~~~L~  366 (398)
                      ++||++.++++++...   ...+.|++|.
T Consensus        80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            9999999999999873   3467898874

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=3.2e-17  Score=133.69  Aligned_cols=99  Identities=22%  Similarity=0.320  Sum_probs=85.5

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCcee
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRL  343 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~l  343 (398)
                      +.|.|+|++|++|..++   ..||||++++++ .+.+|++.++ .||.|||+|.|.+.+. ...|.++|||+|...||+|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~l   75 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTLV   75 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCce
Confidence            68999999999997654   458999999987 6889999877 4999999999999875 4459999999995599999


Q ss_pred             EEEEEECccccccccc--ceEEecccc
Q 015915          344 GIVKLPLIDLEADTPK--EAELRLLPS  368 (398)
Q Consensus       344 G~~~i~l~~l~~~~~~--~~~~~L~~~  368 (398)
                      |++.++|+++..+...  ..|++|.+.
T Consensus        76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          76 GTVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             EEEEEEhHHcccCCCCCCCccEecChH
Confidence            9999999999876555  789999764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.73  E-value=2.8e-17  Score=135.90  Aligned_cols=111  Identities=23%  Similarity=0.311  Sum_probs=95.4

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEE-eec--CCCCeEE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQSLI  329 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~~L~  329 (398)
                      ++-.|....+.|.|+|++|+||+..+..|.+||||++.+.+  ..+++|+++++ .||+|||+|.|. +..  .....|.
T Consensus         7 ~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~   85 (124)
T cd08389           7 VAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALR   85 (124)
T ss_pred             EEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEE
Confidence            34456677899999999999999999889999999988754  35789999887 999999999998 542  2456899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      ++|||++ .+++++||++.++|+++..+.....|++|.
T Consensus        86 ~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          86 FRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             EEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            9999999 899999999999999998887888999875

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>PLN03008 Phospholipase D delta

Probab=99.73  E-value=3.2e-17  Score=168.34  Aligned_cols=127  Identities=28%  Similarity=0.475  Sum_probs=108.3

Q ss_pred             CcEEEEEEeeeeecccCcC------------------------------------------CCCCCcEEEEEEcceeeEe
Q 015915          263 QGKVAVTIVKANNLKNMEM------------------------------------------IGKSDPYAVVHIKPLFKVK  300 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~k  300 (398)
                      +|.|.++|.+|++|+++|.                                          .+++||||++.++++...|
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            7999999999999886331                                          2467999999998766779


Q ss_pred             ccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCc
Q 015915          301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKD  379 (398)
Q Consensus       301 T~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~  379 (398)
                      |+++++++||+|||+|.|.+.++ ...|.|+|||+| ++ +++||++.+|++++..+...+.|++|.....    +..+.
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp~k~  166 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KPPKA  166 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CCCCC
Confidence            99999999999999999999885 458999999999 65 6899999999999999988999999986421    34455


Q ss_pred             ccEEEEEEeeeeeecccC
Q 015915          380 RGSITVKVGASKHSFNLF  397 (398)
Q Consensus       380 ~G~I~l~l~~~y~P~~~~  397 (398)
                      .|+|+++++  |+|+.+.
T Consensus       167 ~~kl~v~lq--f~pv~~~  182 (868)
T PLN03008        167 ETAIFIDMK--FTPFDQI  182 (868)
T ss_pred             CcEEEEEEE--EEEcccc
Confidence            789999999  9999864

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.72  E-value=4.9e-17  Score=133.66  Aligned_cols=102  Identities=33%  Similarity=0.581  Sum_probs=91.7

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      |.|+|+|++|++|+..+..|.+||||++++++...++|++++++.||.|||+|.|.+... .+.|.++|||++ .++|++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence            789999999999999998899999999999875678999999999999999999988764 578999999999 889999


Q ss_pred             eEEEEEECcccccccccceEEeccc
Q 015915          343 LGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ||++.+++.++..+ ..+.|+.+..
T Consensus        80 IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          80 LGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             eeEEEEeHHHhhCC-CCCceEEecC
Confidence            99999999999876 6677887754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.72  E-value=5.6e-17  Score=133.98  Aligned_cols=111  Identities=24%  Similarity=0.325  Sum_probs=95.8

Q ss_pred             cccccCCCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v  330 (398)
                      +..|....+.|+|+|++|++|+..+ ..+.+||||++++.+  ....+|++++++.||.|||+|.|.+...  ....|.+
T Consensus         6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i   85 (123)
T cd08390           6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRL   85 (123)
T ss_pred             EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEE
Confidence            3445677899999999999999998 678999999999853  3467899999999999999999998653  2357999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      +|||++ .+++++||++.++++++........|++|.
T Consensus        86 ~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          86 SVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             EEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            999999 788999999999999999888888999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.72  E-value=4.3e-17  Score=138.79  Aligned_cols=102  Identities=35%  Similarity=0.557  Sum_probs=89.7

Q ss_pred             cCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----------------------------eeEeccccCCCCCce
Q 015915          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----------------------------FKVKTNVVDNNLNPV  311 (398)
Q Consensus       260 ~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----------------------------~~~kT~~~~~t~nP~  311 (398)
                      .++.+.|.|+|++|++|.++|..|.+||||++++.+.                            ..++|+++++++||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            4789999999999999999999999999999998642                            237899999999999


Q ss_pred             eccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECcccccccccceEEec
Q 015915          312 WNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       312 Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      |||+|.|.+.+...+.|.++|||++   |++||++.++++++.. ...+.|++|
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            9999999998766789999999987   8999999999999984 456788865

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=3.3e-16  Score=133.25  Aligned_cols=119  Identities=24%  Similarity=0.304  Sum_probs=93.6

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEE----cceeeEeccccCCCCCceeccEEEEEeecC--------CCCeEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFELIAEDK--------ETQSLIF  330 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~----~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--------~~~~L~v  330 (398)
                      .|.|+|....+.+|+..+..+.+||||++++    ...++.||+++++|+||+|||+|.|.+...        ....|.+
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            3444544444444777777789999999997    334688999999999999999999999643        2457999


Q ss_pred             EEEEcc-C-CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          331 EVFDKD-I-GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       331 ~v~d~d-~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +|||++ + ++|++||++.++|+.+........|++|..       ......|.|++++.
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-------~~k~~Gg~l~v~ir  135 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-------GRKATGGKLEVKVR  135 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-------CCCCcCCEEEEEEE
Confidence            999998 4 689999999999999987766667888753       22345689998887

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.70  E-value=9.2e-17  Score=138.85  Aligned_cols=106  Identities=28%  Similarity=0.358  Sum_probs=90.7

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEEEE
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEVF  333 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~v~  333 (398)
                      .+.|.|+|+|++|+||+..+..|.+||||++++.+    ..++||+++++|.||.|||+|.|.+..   .....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            46899999999999999999889999999999842    357899999999999999999998532   23457999999


Q ss_pred             Ecc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      |+| .++|++||++.++++++...+..+.|+.+.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            999 889999999999999998766667777653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.69  E-value=1.5e-16  Score=134.68  Aligned_cols=91  Identities=37%  Similarity=0.617  Sum_probs=83.7

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK  341 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~  341 (398)
                      .|.|+|+|++|++|+..+. +.+||||++++++ ++++|++++++.||.|||+|.|.+.++ ...+.++|||++ +++|+
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd   77 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD   77 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            3889999999999998887 8999999999987 689999999999999999999999876 678999999999 99999


Q ss_pred             eeEEEEEECcccccc
Q 015915          342 RLGIVKLPLIDLEAD  356 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~  356 (398)
                      +||.+.+++.++...
T Consensus        78 ~iG~a~i~l~~l~~~   92 (145)
T cd04038          78 SMGEAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEEEEHHHhhhh
Confidence            999999999997654

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=1.6e-16  Score=131.29  Aligned_cols=93  Identities=28%  Similarity=0.353  Sum_probs=82.1

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEee-cCCCCeEEEEEEEcc-CC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-DKETQSLIFEVFDKD-IG  338 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~-~~~~~~L~v~v~d~d-~~  338 (398)
                      ...|.|+|+|++|++|+. +..+.+||||++++++ .+++|++++++.||+|||+|.|... ....+.|+|+|||+| .+
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            568999999999999984 6678999999999987 4899999999999999999999743 235679999999999 88


Q ss_pred             CCceeEEEEEECccccc
Q 015915          339 QDKRLGIVKLPLIDLEA  355 (398)
Q Consensus       339 ~d~~lG~~~i~l~~l~~  355 (398)
                      +|++||++.++++....
T Consensus       103 ~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         103 DDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCeeEEEEEEecCCce
Confidence            99999999999997664

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.69  E-value=1.4e-16  Score=134.02  Aligned_cols=102  Identities=25%  Similarity=0.362  Sum_probs=90.7

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcc---eeeEeccccCCCCCceeccEEEEEeecC---------------CCCe
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK---------------ETQS  327 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~~  327 (398)
                      |+|+|++|++|+.+ ..|.+||||+++++.   ..+++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 778999999999983   4678999999999999999999998664               4568


Q ss_pred             EEEEEEEcc-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915          328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      +.++|||++ .+++++||++.++++++........|++|.+.
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999 78999999999999999877778899998764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.69  E-value=5.6e-17  Score=135.91  Aligned_cols=110  Identities=27%  Similarity=0.337  Sum_probs=92.5

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~  329 (398)
                      +..|....|.|.|+|++|++|+..+..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|.
T Consensus         5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~   84 (133)
T cd08384           5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLE   84 (133)
T ss_pred             EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEE
Confidence            3345667899999999999999999889999999999864    2467999999999999999999998643  346899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ++|||+| .++|++||++.+++.+  .+.....|+++..
T Consensus        85 ~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          85 ITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             EEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            9999999 8899999999999986  3345567887654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.69  E-value=1.7e-16  Score=128.67  Aligned_cols=101  Identities=24%  Similarity=0.320  Sum_probs=87.1

Q ss_pred             CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccccc-cc
Q 015915          281 MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD-TP  358 (398)
Q Consensus       281 ~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~-~~  358 (398)
                      ..|.+||||+++++++...+|++++++.||.|||+|.|.+.+.....|.|.|||++ . +|++||++.++|+++... ..
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            46889999999998756689999999999999999999998766678999999999 7 999999999999998653 34


Q ss_pred             cceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          359 KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       359 ~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      ...|++|..          ...|+|+++++  |.|+
T Consensus        88 ~~~w~~L~~----------~~~G~i~~~~~--~~p~  111 (111)
T cd04052          88 GQQWFPLSG----------NGQGRIRISAL--WKPV  111 (111)
T ss_pred             cceeEECCC----------CCCCEEEEEEE--EecC
Confidence            578998742          35799999999  9985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.68  E-value=2e-16  Score=130.79  Aligned_cols=118  Identities=29%  Similarity=0.356  Sum_probs=92.7

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEccee-eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF-KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      +|+|+|++|++|+..|..|.+||||++++++.. ..+|+++++++||.|||+|.|.+..+..+.|.++|||+| .++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            479999999999999999999999999998642 357888889999999999999987666789999999999 889999


Q ss_pred             eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      ||++.+++++..-. .+..+.-+.        ......|.++.+-.  +.|
T Consensus        81 iG~~~i~l~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~--~~~  120 (124)
T cd04037          81 IGETVIDLEDRFFS-KHRATCGLP--------PTYEESGPNQWRDS--LKP  120 (124)
T ss_pred             eEEEEEeecccccc-hHHHhccCC--------CcccccCceecCcc--cCc
Confidence            99999999987531 121222111        22335677777666  554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.68  E-value=6.2e-16  Score=130.21  Aligned_cols=128  Identities=14%  Similarity=0.209  Sum_probs=102.2

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc--CC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD--IG  338 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d--~~  338 (398)
                      +-...|.|.|.+|++|+.++     +|||.+.+++....||+++.++.||.|+|+|+|..... ...++|.||+.+  .+
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~   81 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence            34568999999999998754     79999999996668999999999999999999976543 467999998765  32


Q ss_pred             ---CCceeEEEEEECcccccccccceEEecccccccc---cccCCCcccEEEEEEeeeeeeccc
Q 015915          339 ---QDKRLGIVKLPLIDLEADTPKEAELRLLPSLDML---KIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       339 ---~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~---~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                         ++++||.+.|+++++..+...+.|+++.......   ........|+|+++++  |++...
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~r--f~~~~~  143 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKAR--YQSTRV  143 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEE--EEEeee
Confidence               6899999999999999888889999997642110   0001244579999999  998754

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=1.8e-16  Score=134.77  Aligned_cols=92  Identities=26%  Similarity=0.367  Sum_probs=80.5

Q ss_pred             EEEEEEeeeeecccCcCCC--------------CCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC-CCCeEE
Q 015915          265 KVAVTIVKANNLKNMEMIG--------------KSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLI  329 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~  329 (398)
                      .|.|+|++|++|+.+|..+              .+||||++.+++ .+.+|++++++.||+|||+|.|.+..+ ..+.+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            3789999999999988543              689999999998 467999999999999999999987543 356899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECccccccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADT  357 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~  357 (398)
                      ++|||+| .++|+++|++.+++.++...+
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            9999999 889999999999999987644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=9.5e-17  Score=134.51  Aligned_cols=111  Identities=23%  Similarity=0.212  Sum_probs=92.0

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L  328 (398)
                      ++..|.+..+.|.|+|++|+||+..+..|.+||||++++.+.    .+.||+++++++||+|||+|.|.+..  .....|
T Consensus         6 ~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l   85 (136)
T cd08406           6 LSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSL   85 (136)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEE
Confidence            344566778999999999999999998899999999999542    25689999999999999999999864  345689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .|+|||+| .+++++||++.+....  .+...+.|..+..
T Consensus        86 ~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~  123 (136)
T cd08406          86 RVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA  123 (136)
T ss_pred             EEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence            99999999 8999999999997654  4455667776654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.68  E-value=1.4e-16  Score=133.49  Aligned_cols=111  Identities=26%  Similarity=0.337  Sum_probs=91.8

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcC--CCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCC
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQ  326 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~  326 (398)
                      ++..|.+..+.|.|.|++|+||...+.  .+.+||||++++.+.    .++||+++++++||+|||+|.|.+...  ...
T Consensus         6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~   85 (138)
T cd08407           6 LSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAAS   85 (138)
T ss_pred             EEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCcc
Confidence            344566788999999999999999883  355999999999752    356899999999999999999999653  356


Q ss_pred             eEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          327 SLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       327 ~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .|.++|||+| .+++++||++.+++..  .+.+.++|..+..
T Consensus        86 ~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~  125 (138)
T cd08407          86 SVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD  125 (138)
T ss_pred             EEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence            7999999999 9999999999999975  4555677877653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.67  E-value=1.1e-15  Score=128.08  Aligned_cols=115  Identities=28%  Similarity=0.441  Sum_probs=93.4

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcce------------eeEeccccCCCCCcee-ccEEEEEeecCCCCeEEEE
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------FKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE  331 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------------~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~L~v~  331 (398)
                      +..|++++|+||+ ++..|++||||++++.+.            ++++|+++++++||.| ||+|.|.+..  ++.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence            4678999999998 777899999999999641            3689999999999999 9999999853  4689999


Q ss_pred             EEEcc-CCC---CceeEEEEEECcccccccc---cceEEecccccccccccCCCcccEEEEEE
Q 015915          332 VFDKD-IGQ---DKRLGIVKLPLIDLEADTP---KEAELRLLPSLDMLKIKDKKDRGSITVKV  387 (398)
Q Consensus       332 v~d~d-~~~---d~~lG~~~i~l~~l~~~~~---~~~~~~L~~~~~~~~~~~~~~~G~I~l~l  387 (398)
                      |||++ .++   +++||++.+++.++..+..   ...|+++.++     ...+..+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~-----~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR-----TPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC-----CCCCcEEEEEEEEe
Confidence            99987 433   7999999999999976532   4467777543     34566789998875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.67  E-value=4.2e-16  Score=130.61  Aligned_cols=97  Identities=31%  Similarity=0.470  Sum_probs=85.2

Q ss_pred             ccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc------eeeEeccccCCCCCceeccEEEEEeecC----CCCeE
Q 015915          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVDNNLNPVWNQTFELIAEDK----ETQSL  328 (398)
Q Consensus       259 ~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~L  328 (398)
                      +....+.|+|+|++|++|+..+..|.+||||++++.+      ..+++|+++++|+||.|||+|.|.+...    ....|
T Consensus        11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l   90 (133)
T cd04009          11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL   90 (133)
T ss_pred             EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence            3456789999999999999998889999999999863      2468999999999999999999998652    34589


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECccccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEA  355 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~  355 (398)
                      .++|||++ .++|++||++.++++++..
T Consensus        91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          91 LFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            99999999 8889999999999999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=1.4e-15  Score=124.47  Aligned_cols=112  Identities=28%  Similarity=0.441  Sum_probs=88.1

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC--CCeEEEEEEEcc-CCCCce
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v~v~d~d-~~~d~~  342 (398)
                      |+|+|++|++|+..   |.+||||.+++++...++|+++++ .||.|||+|.|.+...+  ...+.+.+||.+ ..++..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   789999999998755689999988 99999999999987643  245777788877 656666


Q ss_pred             eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +|.+.  +..+..+...+.|++|.+.     .......|+|++++.
T Consensus        78 ~g~v~--l~~~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVA--LSKLDLGQGKDEWFPLTPV-----DPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEE--ecCcCCCCcceeEEECccC-----CCCCCcCceEEEEEE
Confidence            66654  5555556677899998753     133567899999998

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.67  E-value=1.2e-15  Score=126.45  Aligned_cols=117  Identities=26%  Similarity=0.376  Sum_probs=93.9

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      ..|+|+|.+|+ |...+..+.+||||.+++++...++|++++++.||.|||+|.|.+..  .+.|.++|||++ .++|++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~   78 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVL   78 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcE
Confidence            36899999998 55555578999999999987547899999999999999999999864  578999999999 889999


Q ss_pred             eEEEEEECcccccccc-----cceEEecccccccccccCCCcccEEEEEE
Q 015915          343 LGIVKLPLIDLEADTP-----KEAELRLLPSLDMLKIKDKKDRGSITVKV  387 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~~~G~I~l~l  387 (398)
                      +|++.++++++.....     ...|+++...   . ..++...|++.+++
T Consensus        79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~G~~~~~~  124 (125)
T cd04021          79 LGEASLDLSDILKNHNGKLENVKLTLNLSSE---N-KGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEHHHhHhhcCCCccceEEEEEEEcc---C-CCcceeeeeEEEEe
Confidence            9999999999876433     1236666532   0 11446789999876

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=6.9e-16  Score=152.40  Aligned_cols=135  Identities=26%  Similarity=0.284  Sum_probs=113.5

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce--eeEeccccCCCCCceeccEEEEEeec--CCCCeEEE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIF  330 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~v  330 (398)
                      ++..|......|+|+|++|++|+.+|..|.+||||++++.+.  .+.+|++.++++||.|||+|.|.+..  .....|.+
T Consensus       158 fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l  237 (421)
T KOG1028|consen  158 FSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHL  237 (421)
T ss_pred             EEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEE
Confidence            444566788999999999999999997788999999999763  56899999999999999999999743  35679999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      +|||.| +++|+++|++.++|..+........|.++.....    ......|+|.++++  |.|..
T Consensus       238 ~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~----~~~~~~gel~~sL~--Y~p~~  297 (421)
T KOG1028|consen  238 SVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST----DSEELAGELLLSLC--YLPTA  297 (421)
T ss_pred             EEEecCCcccccEEEEEEecCccccccccceeeeccccccC----CcccccceEEEEEE--eecCC
Confidence            999999 9999999999999999988777788998876421    12222389999999  99973

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.66  E-value=4.1e-16  Score=131.19  Aligned_cols=106  Identities=26%  Similarity=0.361  Sum_probs=89.5

Q ss_pred             ccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEE
Q 015915          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEV  332 (398)
Q Consensus       259 ~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v  332 (398)
                      |....+.|.|+|++|++|+..|..|.+||||++++.+.    .+.+|+++++++||.|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v   89 (136)
T cd08404          10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV   89 (136)
T ss_pred             EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            44568899999999999999998999999999998541    357899999999999999999998642  345788999


Q ss_pred             EEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      ||+| .+++++||++.+++..  .+.....|..+.
T Consensus        90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             EECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            9999 8999999999999998  344567787764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.65  E-value=3.1e-16  Score=131.93  Aligned_cols=110  Identities=30%  Similarity=0.385  Sum_probs=91.2

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~  329 (398)
                      +..|.+..|.|+|+|++|++|+..+..|.+||||++++.+    ..+++|++++++.||.|||+|.|.+..  .....|.
T Consensus         7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~   86 (136)
T cd08405           7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLI   86 (136)
T ss_pred             EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEE
Confidence            3345567899999999999999998889999999999842    235789999999999999999998753  2345899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |+|||++ .++|++||++.+++.+.  +...+.|.++..
T Consensus        87 ~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          87 ITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             EEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            9999999 88999999999999886  444567777653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.65  E-value=2.4e-16  Score=132.64  Aligned_cols=111  Identities=32%  Similarity=0.446  Sum_probs=92.3

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      ++..|.++.|.|+|+|++|++|+..+..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|
T Consensus         6 ~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l   85 (136)
T cd08402           6 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHL   85 (136)
T ss_pred             EEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEE
Confidence            44456678899999999999999999899999999999853    1357899999999999999999998643  23479


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .++|||++ .++|++||++.+++...  +.....|.++..
T Consensus        86 ~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~  123 (136)
T cd08402          86 IVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA  123 (136)
T ss_pred             EEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence            99999999 89999999999999764  445567877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.65  E-value=1.2e-15  Score=123.80  Aligned_cols=99  Identities=22%  Similarity=0.257  Sum_probs=84.3

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC----CCeEEEEEEEcc-C
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE----TQSLIFEVFDKD-I  337 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~----~~~L~v~v~d~d-~  337 (398)
                      .-.|+|+|++|++|.    .|.+||||++++++ ++++|++++++.||.|||+|.|.+..+.    ...|.++|||++ .
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG-QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC-EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            346899999999998    47899999999997 5789999999999999999999985432    458999999999 8


Q ss_pred             CCCceeEEEEEECcccccccc---cceEEecc
Q 015915          338 GQDKRLGIVKLPLIDLEADTP---KEAELRLL  366 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~---~~~~~~L~  366 (398)
                      ++|++||++.++++++..+..   ...|++|.
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            889999999999999976543   35677764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.65  E-value=2.6e-16  Score=132.01  Aligned_cols=111  Identities=33%  Similarity=0.480  Sum_probs=91.0

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      ++..|.++.|.|+|+|++|++|++.+..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|
T Consensus         5 ~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l   84 (134)
T cd08403           5 FSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSL   84 (134)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEE
Confidence            34456678899999999999999999999999999999853    2357899999999999999999988542  23469


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .++|||++ .++|++||++.+++.  ..+.....|.++..
T Consensus        85 ~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~  122 (134)
T cd08403          85 IIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA  122 (134)
T ss_pred             EEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence            99999999 899999999999987  33445567777643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.65  E-value=3.5e-16  Score=131.68  Aligned_cols=111  Identities=23%  Similarity=0.284  Sum_probs=93.5

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~  329 (398)
                      +..|.+..+.|.|+|++|+||+..+ .+.+||||++++.+.    .+++|++++++.||.|||+|.|.+..  .....|.
T Consensus         7 sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~   85 (137)
T cd08409           7 SLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLS   85 (137)
T ss_pred             EEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEE
Confidence            3345567899999999999999988 788999999998642    35689999999999999999999953  3446899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ++|||++ .+++++||++.+.......+.+.++|.++..
T Consensus        86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            9999999 8999999999999777666666778887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.64  E-value=9.9e-16  Score=125.99  Aligned_cols=97  Identities=32%  Similarity=0.423  Sum_probs=85.0

Q ss_pred             EeeeeecccCcCCCCCCcEEEEEEccee------eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-----CC
Q 015915          270 IVKANNLKNMEMIGKSDPYAVVHIKPLF------KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-----IG  338 (398)
Q Consensus       270 V~~a~~L~~~d~~g~~dpyv~v~~~~~~------~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-----~~  338 (398)
                      .++|++|+..+..|.+||||++++.+..      .++|+++++++||.|||+|.|.+.....+.+.++|||+|     .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            4789999999989999999999997632      489999999999999999999876555678999999998     46


Q ss_pred             CCceeEEEEEECcccccccccceEEecc
Q 015915          339 QDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       339 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      +|++||++.++++++..+.....++.|.
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            8999999999999999877777888773

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.63  E-value=2e-15  Score=124.70  Aligned_cols=107  Identities=28%  Similarity=0.447  Sum_probs=89.9

Q ss_pred             ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec---CCCCeEE
Q 015915          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLI  329 (398)
Q Consensus       257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~  329 (398)
                      -.|.+..+.|+|+|++|++|++.+..+.+||||++++.+    ....+|++++++.||.|||+|.|....   .....+.
T Consensus         8 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~   87 (123)
T cd04035           8 LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLR   87 (123)
T ss_pred             EEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEE
Confidence            345567899999999999999998889999999999843    246899999999999999999986322   2346899


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEe
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELR  364 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~  364 (398)
                      ++|||++ . ++++||.+.++++++..+..++.++.
T Consensus        88 ~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          88 LLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            9999999 7 89999999999999998777766653

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.63  E-value=1.5e-15  Score=125.74  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=88.9

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCC-CceeccEEEEEeecCC-CCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNL-NPVWNQTFELIAEDKE-TQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~-nP~Wne~f~~~v~~~~-~~~L  328 (398)
                      ++..|.+..|.|+|+|++|+||++....+.+||||++++-.    ..++||+++++|+ ||.|||+|.|.+.... .-.+
T Consensus         5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l   84 (135)
T cd08692           5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQF   84 (135)
T ss_pred             EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEE
Confidence            34567788999999999999999876566779999998842    2468999999996 6999999999997532 2367


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      .++|||++ .+++++||++.+..++.. +.+.++|.+..
T Consensus        85 ~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~  122 (135)
T cd08692          85 LIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI  122 (135)
T ss_pred             EEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence            78899999 899999999999998742 33456776654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.63  E-value=1.5e-15  Score=127.75  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=92.5

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeec--CCCCe
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KETQS  327 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~  327 (398)
                      .+..|....+.|.|+|++|+||+..+..|.+||||++++.+.     .++||++++++.||+|||+|.|.+..  ..+..
T Consensus         6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~   85 (138)
T cd08408           6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVT   85 (138)
T ss_pred             EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccE
Confidence            344566789999999999999999998899999999999641     25699999999999999999999964  34568


Q ss_pred             EEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |.|+|||.+ .+++++||++.+++..... ...+.|..+..
T Consensus        86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~  125 (138)
T cd08408          86 LMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE  125 (138)
T ss_pred             EEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence            999999999 9999999999998875432 23457776643

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.63  E-value=1.4e-15  Score=127.63  Aligned_cols=111  Identities=22%  Similarity=0.393  Sum_probs=88.4

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~  329 (398)
                      +..|.+..|.|+|+|++|++|+..|..|.+||||++++.+    ..+++|+++++|.||.|||+|.|.+...  ....|.
T Consensus         6 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~   85 (135)
T cd08410           6 SLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLV   85 (135)
T ss_pred             EEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEE
Confidence            3445677899999999999999999889999999999843    2357999999999999999999998542  234699


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ++|||+| .++|++||++.+....... ...+.|..+..
T Consensus        86 ~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          86 FTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             EEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            9999999 8999999999866433322 13467877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.62  E-value=9.3e-16  Score=128.52  Aligned_cols=108  Identities=31%  Similarity=0.408  Sum_probs=92.9

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecCC--CCeEEEE
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFE  331 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v~  331 (398)
                      .|.+..+.|.|+|++|++|+..+..+.+||||++++.+.    ..++|+++.++.||.|||+|.|.+....  ...|.++
T Consensus         8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~   87 (134)
T cd00276           8 SYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT   87 (134)
T ss_pred             EeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence            344567999999999999999988899999999998652    3579999999999999999999986542  5689999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |||++ .+++++||.+.+++++  .+...+.|+++..
T Consensus        88 v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  122 (134)
T cd00276          88 VVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA  122 (134)
T ss_pred             EEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence            99999 7899999999999999  5556788988864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.62  E-value=3.2e-15  Score=124.87  Aligned_cols=104  Identities=32%  Similarity=0.507  Sum_probs=91.2

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc-
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD-  336 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d-  336 (398)
                      .+.|+|+|++|++|+..+..+.+||||.+++.+    ...++|++++++.||.|||+|.|.+... ..+.|.++|||++ 
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~   91 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR   91 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence            489999999999999988888999999999963    3578999999999999999999998653 3468999999999 


Q ss_pred             CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          337 IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .++++++|++.++++++... ....|++|..
T Consensus        92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            88999999999999999855 6678998864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=2.5e-16  Score=148.59  Aligned_cols=105  Identities=32%  Similarity=0.534  Sum_probs=92.0

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD  336 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d  336 (398)
                      ....|+|+|.+|+||.++|.+|.|||||++.+-+    ..+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            5678999999999999999999999999999954    3568999999999999999999998543 4568999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                       .+++||||...+.++++... ..+.|++|++
T Consensus       258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLs  288 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLS  288 (683)
T ss_pred             ccccccccceecccHHHHhhc-chhhHHHHhh
Confidence             99999999999999999875 4467877754

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.61  E-value=1.5e-14  Score=120.09  Aligned_cols=115  Identities=34%  Similarity=0.445  Sum_probs=92.7

Q ss_pred             EEEEEEeeeeecccCc--CCCCCCcEEEEEEcc-----eeeEeccccCCCC-CceeccEEEEEeecCCCCeEEEEEEEcc
Q 015915          265 KVAVTIVKANNLKNME--MIGKSDPYAVVHIKP-----LFKVKTNVVDNNL-NPVWNQTFELIAEDKETQSLIFEVFDKD  336 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d--~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~-nP~Wne~f~~~v~~~~~~~L~v~v~d~d  336 (398)
                      .|+|+|++|++|+..+  ..+.+||||++++.+     ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            5899999999999887  578999999999842     2468999987765 9999999999998766667999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                       . +|+++|.+.++++++..+   ..+++|...     .......|.|.+.+.
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~-----~~~~~~~~~l~v~~~  126 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQG---YRHVPLLDS-----KGEPLELSTLFVHID  126 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCc---eEEEEecCC-----CCCCCcceeEEEEEE
Confidence             6 999999999999999643   245666532     122345789998887

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.58  E-value=9.2e-15  Score=117.74  Aligned_cols=80  Identities=28%  Similarity=0.479  Sum_probs=69.3

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEc------
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK------  335 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~------  335 (398)
                      |.|+|++|+||+     +.+||||++++.+    ..+.+|+++++|+||+|||+|+|.+..  .+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence            579999999995     5699999999864    246899999999999999999999963  67999999998      


Q ss_pred             -c-CCCCceeEEEEEECcc
Q 015915          336 -D-IGQDKRLGIVKLPLID  352 (398)
Q Consensus       336 -d-~~~d~~lG~~~i~l~~  352 (398)
                       | .++|+.+|++.+.|+.
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccCcccEEEEEEEEECH
Confidence             4 5889999998888754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.57  E-value=8.5e-15  Score=163.53  Aligned_cols=118  Identities=23%  Similarity=0.389  Sum_probs=101.7

Q ss_pred             cCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC-CCeEEEEEEEcc-C
Q 015915          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVFDKD-I  337 (398)
Q Consensus       260 ~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~L~v~v~d~d-~  337 (398)
                      ..-.|.|+|+|++|+||.  +..|.+||||++.++++.+.||+++++|.||+|||+|.|.+.++. ++.++++|||+| +
T Consensus      1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            345899999999999998  447899999999999766889999999999999999998887764 467999999999 7


Q ss_pred             CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccE---EEEEEe
Q 015915          338 GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGS---ITVKVG  388 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~---I~l~l~  388 (398)
                      ++ +.||.+.+++.++..++....|++|.+        +++..|+   |.+++.
T Consensus      2054 ~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~ 2098 (2102)
T PLN03200       2054 GK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQ 2098 (2102)
T ss_pred             CC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEE
Confidence            54 599999999999999888899998853        2344677   999998

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.55  E-value=2.9e-14  Score=115.31  Aligned_cols=88  Identities=27%  Similarity=0.521  Sum_probs=74.9

Q ss_pred             EeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeecC----CCCeEEEEEEEcc-CCC
Q 015915          270 IVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAEDK----ETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       270 V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~L~v~v~d~d-~~~  339 (398)
                      .++|++|+..|..|.+||||++++.+.     ..++|+++++++||.|| +|.|.+...    ..+.|.++|||++ .++
T Consensus         6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~   84 (110)
T cd04047           6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK   84 (110)
T ss_pred             EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence            469999999999999999999998642     35899999999999999 688776432    2578999999999 889


Q ss_pred             CceeEEEEEECcccccccc
Q 015915          340 DKRLGIVKLPLIDLEADTP  358 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~  358 (398)
                      |++||++.++++++.....
T Consensus        85 d~~iG~~~~~l~~l~~~~~  103 (110)
T cd04047          85 HDLIGEFETTLDELLKSSP  103 (110)
T ss_pred             CcEEEEEEEEHHHHhcCCC
Confidence            9999999999999985443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.50  E-value=1e-13  Score=106.00  Aligned_cols=82  Identities=46%  Similarity=0.700  Sum_probs=74.0

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEccee--eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF--KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      |+|+|++|++|...+..+..|||+++.+.+..  .++|++++++.+|.|+|+|.|.+.....+.|.|+|||++ .++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999998643  489999999999999999999987777778999999999 888999


Q ss_pred             eEEEE
Q 015915          343 LGIVK  347 (398)
Q Consensus       343 lG~~~  347 (398)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=2e-13  Score=134.20  Aligned_cols=117  Identities=26%  Similarity=0.463  Sum_probs=100.1

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc--C---
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD--I---  337 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d--~---  337 (398)
                      ...++++|..|.+|..+|..|++||||..+++. .+.||+++..++||+|||.|.|..++ .++.++++|||+|  .   
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~k-tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksk  371 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSK  371 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecc-cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHH
Confidence            568899999999999999999999999999997 68999999999999999999999998 4679999999988  2   


Q ss_pred             -------CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          338 -------GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       338 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                             ..|||+|+..+.+..+..  ..+.|+.|.++.     .+...+|.|++.+.
T Consensus       372 lrqkl~resddflgqtvievrtlsg--emdvwynlekrt-----dksavsgairlhis  422 (1283)
T KOG1011|consen  372 LRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRT-----DKSAVSGAIRLHIS  422 (1283)
T ss_pred             HHHHhhhcccccccceeEEEEeccc--chhhhcchhhcc-----chhhccceEEEEEE
Confidence                   368999999999988864  567899887642     34556787776655

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.42  E-value=4.7e-13  Score=133.27  Aligned_cols=124  Identities=23%  Similarity=0.330  Sum_probs=111.3

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCce
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKR  342 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~  342 (398)
                      ...|.|+|.+|+||+..+..|.+||||.+.++....+||.++.+++.|.|.|+|+|.+... -+.|.|.|||+|+++|+.
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~D~~   82 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKRDDI   82 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccccccccc
Confidence            3468899999999999999999999999999987889999999999999999999999763 568999999999999999


Q ss_pred             eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      ||.+.+.=+++....+++.|+.|.+-     ..+....|+|++++.  +.+.
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~V-----D~dsEVQG~v~l~l~--~~e~  127 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQPV-----DPDSEVQGKVHLELA--LTEA  127 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceecccc-----CCChhhceeEEEEEE--eccc
Confidence            99999999999888889999998752     356778999999999  7654

>PLN02270 phospholipase D alpha

Probab=99.35  E-value=8.4e-12  Score=128.82  Aligned_cols=128  Identities=19%  Similarity=0.277  Sum_probs=104.9

Q ss_pred             CcEEEEEEeeeeecccCc------------------CCCCCCcEEEEEEcceeeEeccccCCC-CCceeccEEEEEeecC
Q 015915          263 QGKVAVTIVKANNLKNME------------------MIGKSDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAEDK  323 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~  323 (398)
                      .|.|.|+|.+|++|++.+                  ..+.+||||.+.+++....||+++.+. .||.|+|+|.+++...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            799999999999998631                  125789999999998788999999884 6999999999999875


Q ss_pred             CCCeEEEEEEEccCCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecccC
Q 015915          324 ETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLF  397 (398)
Q Consensus       324 ~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~~  397 (398)
                      . ..+.|.|.|.|.-...+||.+.+|+.++..+...+.|+++...-    .+..+..-+|+++++  |+|+...
T Consensus        87 ~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~--f~~~~~~  153 (808)
T PLN02270         87 A-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQ--YFEVTKD  153 (808)
T ss_pred             c-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEE--EEEcccC
Confidence            4 68999999999445569999999999999988899999987531    011122348999999  9998764

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.34  E-value=9.5e-12  Score=97.58  Aligned_cols=93  Identities=45%  Similarity=0.662  Sum_probs=81.4

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcce--eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR  342 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~  342 (398)
                      +.|+|++|++|...+..+..+|||.+++.+.  ...+|+++.++.||.|||+|.|.+.....+.+.++|||++ .+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6899999999988776578899999999874  4789999999999999999999998755789999999999 777999


Q ss_pred             eEEEEEECcccccccc
Q 015915          343 LGIVKLPLIDLEADTP  358 (398)
Q Consensus       343 lG~~~i~l~~l~~~~~  358 (398)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.33  E-value=1.4e-11  Score=96.28  Aligned_cols=99  Identities=44%  Similarity=0.665  Sum_probs=84.4

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG  344 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG  344 (398)
                      |.|+|++|++|......+..+|||.+.+.+...++|+++.++.||.||+.|.|.+.......+.++||+++ .++++++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            46899999999886667889999999998746789999999999999999999998645678999999999 77799999


Q ss_pred             EEEEECcccc-cccccceEEe
Q 015915          345 IVKLPLIDLE-ADTPKEAELR  364 (398)
Q Consensus       345 ~~~i~l~~l~-~~~~~~~~~~  364 (398)
                      .+.+++.++. .......|++
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~  101 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLP  101 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceec
Confidence            9999999998 4444555654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.31  E-value=4.9e-12  Score=132.65  Aligned_cols=126  Identities=24%  Similarity=0.329  Sum_probs=106.9

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      .+.|-|+|.+..|.||+..|.+|.+||||++.+.....++|+++++|+||+|||++.+.+.......+++.|+|+| ..+
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence            4689999999999999999999999999999998867899999999999999999999998767789999999999 899


Q ss_pred             CceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          340 DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      ++.||.+.++|+.+..+.......++-..      ......|.++....  |.+.
T Consensus      1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk------~~~~~~g~~~~~~~--~r~~ 1163 (1227)
T COG5038        1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK------TFIVLDGTLHPGFN--FRSK 1163 (1227)
T ss_pred             ccccccccccHhhcCcCCccceeeeccCc------ceEecccEeeccee--cchh
Confidence            99999999999999988776666655321      12344677776666  5553

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.31  E-value=1.4e-11  Score=95.70  Aligned_cols=85  Identities=26%  Similarity=0.448  Sum_probs=73.2

Q ss_pred             HHHHHhHhh-hHH-HHHHHHHHHhHHHHHHh-cCCCCcceEEEeEEecCCCCCeeeeEEEEEc-CCCeEEEEEEEEEeCC
Q 015915           74 NKELSKLWP-FVA-DAAELVIKESVEPLLEE-YRPPGITSLKFSKLSLGNVAPKIEGIRVQSL-KQGQITMDIDFRWGGD  149 (398)
Q Consensus        74 N~~l~~~Wp-~~~-~~~~~~~~~~l~~~l~~-~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~~-~~~~~~ld~~~~~~~~  149 (398)
                      |.+++|++- +.+ +++.+.+++.|+..|++ .+|+|+++|++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            677888665 333 58889999999999998 4599999999999999999999999999764 4556999999999999


Q ss_pred             CcEEEEEEe
Q 015915          150 PSIILGVEA  158 (398)
Q Consensus       150 ~~i~l~~~~  158 (398)
                      ..+.++++.
T Consensus        81 ~~l~l~t~l   89 (91)
T PF10296_consen   81 FSLTLETKL   89 (91)
T ss_pred             eEEEEEEEE
Confidence            999998765

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.29  E-value=2.2e-11  Score=100.77  Aligned_cols=92  Identities=25%  Similarity=0.280  Sum_probs=77.3

Q ss_pred             EEEEEeeeeecccCc--CCC--CCCcEEEEEEcc--eeeEeccccCCCCC--ceeccEEEEEeecC--------------
Q 015915          266 VAVTIVKANNLKNME--MIG--KSDPYAVVHIKP--LFKVKTNVVDNNLN--PVWNQTFELIAEDK--------------  323 (398)
Q Consensus       266 L~V~V~~a~~L~~~d--~~g--~~dpyv~v~~~~--~~~~kT~~~~~t~n--P~Wne~f~~~v~~~--------------  323 (398)
                      |+|.|.+|++++..+  ..|  .+||||+..+.+  ..+++|.+..+++|  |.||+.|.|++..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999965443  356  499999999976  36789999999999  99999999887541              


Q ss_pred             ---------CCCeEEEEEEEcc-CCCCceeEEEEEECccccccc
Q 015915          324 ---------ETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADT  357 (398)
Q Consensus       324 ---------~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~  357 (398)
                               ....|.++|||.| +++|+++|.+.+++..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     2457899999999 999999999999999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=4.9e-11  Score=118.08  Aligned_cols=109  Identities=34%  Similarity=0.446  Sum_probs=89.7

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~  329 (398)
                      +..|.++.|.|+|.|++|++|..++..+.+||||++++..    ..+++|.++++++||.|||+|.|.+..  ...-.+.
T Consensus       290 sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~  369 (421)
T KOG1028|consen  290 SLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLE  369 (421)
T ss_pred             EEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEE
Confidence            3446788999999999999999999999999999999843    346899999999999999999998863  3344688


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      ++|||+| .+++++||.+.+....  .+....+|.+..
T Consensus       370 l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~  405 (421)
T KOG1028|consen  370 LTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML  405 (421)
T ss_pred             EEEEEcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence            9999999 9999999998888766  333355665543

>PLN02223 phosphoinositide phospholipase C

Probab=99.14  E-value=2.2e-10  Score=114.08  Aligned_cols=101  Identities=23%  Similarity=0.318  Sum_probs=82.4

Q ss_pred             CcEEEEEEeeeeeccc-----CcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEE
Q 015915          263 QGKVAVTIVKANNLKN-----MEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVF  333 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~-----~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~  333 (398)
                      ...|.|+|+.|++++.     .+.....||||++.+.+    ..+++|.+..++.||.|||+|.|.+..++-..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            3579999999998741     12235679999999854    23567888888999999999999999888778999999


Q ss_pred             Ecc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      |+| ..+|+++|++.+|+.++..|-   ...+|.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~  518 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY  518 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence            999 788999999999999998764   344554

>PLN02952 phosphoinositide phospholipase C

Probab=99.12  E-value=6.9e-10  Score=112.75  Aligned_cols=102  Identities=23%  Similarity=0.289  Sum_probs=83.8

Q ss_pred             CcEEEEEEeeeeecccC------cCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915          263 QGKVAVTIVKANNLKNM------EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~------d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v  332 (398)
                      ...|.|+|+.|.+++..      +.....||||++.+-+    ..+.+|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999887431      1223459999999854    2467999999999999999999999887777899999


Q ss_pred             EEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ||+| .++|+++|++.+|++.+..|-   .+++|..
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            9999 788999999999999999875   3677753

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.06  E-value=2.5e-11  Score=121.17  Aligned_cols=123  Identities=26%  Similarity=0.511  Sum_probs=101.5

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce------------------------------eeEeccccCCCCCc
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------------------------FKVKTNVVDNNLNP  310 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------------------------------~~~kT~~~~~t~nP  310 (398)
                      +|.-.+.|.+.+|+||.++|.+|.||||+...+.+.                              -.+-|+++++|+||
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP  190 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP  190 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence            355567788899999999999999999999876320                              01457888999999


Q ss_pred             eeccEEEEEeecCCCCeEEEEEEEcc-C---------------------------------CC---CceeEEEEEECccc
Q 015915          311 VWNQTFELIAEDKETQSLIFEVFDKD-I---------------------------------GQ---DKRLGIVKLPLIDL  353 (398)
Q Consensus       311 ~Wne~f~~~v~~~~~~~L~v~v~d~d-~---------------------------------~~---d~~lG~~~i~l~~l  353 (398)
                      .|+|.|.|.+.+..++.+++.+||+| -                                 +.   |||+|.+.+|+.++
T Consensus       191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            99999999999988899999999977 2                                 11   89999999999999


Q ss_pred             ccccccceEEecccccccccccCCCcccEEEEEEee
Q 015915          354 EADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGA  389 (398)
Q Consensus       354 ~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~  389 (398)
                      ... +.+.||+|.++     +..++..|++++.+.+
T Consensus       271 P~~-Gld~WFkLepR-----S~~S~VqG~~~LklwL  300 (1103)
T KOG1328|consen  271 PPD-GLDQWFKLEPR-----SDKSKVQGQVKLKLWL  300 (1103)
T ss_pred             Ccc-hHHHHhccCcc-----cccccccceEEEEEEE
Confidence            765 56789999864     4667789999999983

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.06  E-value=5.4e-10  Score=87.15  Aligned_cols=87  Identities=22%  Similarity=0.427  Sum_probs=74.8

Q ss_pred             EEEEEeeeeecccCc---CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCce
Q 015915          266 VAVTIVKANNLKNME---MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKR  342 (398)
Q Consensus       266 L~V~V~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~  342 (398)
                      |.|+|.+|+|+...+   +.+.+||||.++++...+.||++   +.||.|||+|.|.+.  ....+.+.|||+.....-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeecc
Confidence            578999999998877   67889999999999877889986   489999999999995  4679999999987666678


Q ss_pred             eEEEEEECccccccc
Q 015915          343 LGIVKLPLIDLEADT  357 (398)
Q Consensus       343 lG~~~i~l~~l~~~~  357 (398)
                      +|..-+.++++..+.
T Consensus        76 i~llW~~~sdi~Ee~   90 (109)
T cd08689          76 VGLLWLRLSDIAEEI   90 (109)
T ss_pred             eeeehhhHHHHHHHH
Confidence            999999999987643

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.98  E-value=3e-10  Score=113.60  Aligned_cols=98  Identities=31%  Similarity=0.449  Sum_probs=86.4

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce------eeEeccccCCCCCceeccEEEEEeecC----CCCe
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDNNLNPVWNQTFELIAEDK----ETQS  327 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~  327 (398)
                      .|......|.|.|+.|+++.+.|.+|.|||||++.+.+.      ..++|+++++|+||+|+|+|+|.|...    +...
T Consensus       941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen  941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred             EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence            344677889999999999999999999999999999873      347999999999999999999999643    3557


Q ss_pred             EEEEEEEcc-CCCCceeEEEEEECccccc
Q 015915          328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEA  355 (398)
Q Consensus       328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~  355 (398)
                      +.++|+|+| ...+||-|++.+.|+++..
T Consensus      1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             EEEEeeccceecccccchHHHHhhCCCCC
Confidence            899999999 9999999999999999864

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.95  E-value=2.9e-09  Score=108.06  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=79.5

Q ss_pred             CcEEEEEEeeeeeccc--C----cCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915          263 QGKVAVTIVKANNLKN--M----EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~--~----d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v  332 (398)
                      ..+|.|+|+.+.+++.  .    +.....||||++.+-+    ..+.+|++..++.||.|||+|.|.+.-++-..|+|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            4689999999998642  1    2234579999999853    2357888889999999999999999888778899999


Q ss_pred             EEcc-CCCCceeEEEEEECccccccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADT  357 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~  357 (398)
                      +|+| ..+|+|+|++.+|+.+|..|-
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy  573 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGI  573 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCcc
Confidence            9999 789999999999999998764

>PLN02352 phospholipase D epsilon

Probab=98.95  E-value=7.5e-09  Score=107.01  Aligned_cols=120  Identities=16%  Similarity=0.226  Sum_probs=94.2

Q ss_pred             CcEEEEEEeeeeecccC----cCC-CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccC
Q 015915          263 QGKVAVTIVKANNLKNM----EMI-GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDI  337 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~  337 (398)
                      +|.|.++|.+|+-+...    +.. ...||||.+.+++....||   .+..||.|+|+|.+++.......+.|.|.|   
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence            79999999999854322    111 1239999999998777888   566699999999999987654579999988   


Q ss_pred             CCCceeEEEEEECcccccccc-cceEEecccccccccccCCCcc-cEEEEEEeeeeeecccC
Q 015915          338 GQDKRLGIVKLPLIDLEADTP-KEAELRLLPSLDMLKIKDKKDR-GSITVKVGASKHSFNLF  397 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~-G~I~l~l~~~y~P~~~~  397 (398)
                       ...+||++.+|+.++..+.. .+.|+++...      .++... .+|+++++  |+|+.+.
T Consensus        83 -~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~------~~~p~~~~~~~~~~~--~~~~~~~  135 (758)
T PLN02352         83 -KCSILGRFHIQAHQIVTEASFINGFFPLIME------NGKPNPELKLRFMLW--FRPAELE  135 (758)
T ss_pred             -CCeEEEEEEEEHHHhhCCCcccceEEEcccC------CCCCCCCCEEEEEEE--EEEhhhC
Confidence             37899999999999988766 8899998753      222223 49999999  9998764

>PLN02228 Phosphoinositide phospholipase C

Probab=98.95  E-value=1.1e-08  Score=103.34  Aligned_cols=125  Identities=21%  Similarity=0.278  Sum_probs=94.8

Q ss_pred             CcEEEEEEeeeeeccc---C---cCCCCCCcEEEEEEcc----eeeEeccccCCCCCcee-ccEEEEEeecCCCCeEEEE
Q 015915          263 QGKVAVTIVKANNLKN---M---EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE  331 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~---~---d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~L~v~  331 (398)
                      ...|+|+|++|++|+.   .   +.....||||++.+.+    ..+++|++++++.||.| ||+|.|.+..++-..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   1   1223479999999853    24579999999999999 9999999988877889999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCC-cccEEEEEEeeeeeecccCC
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKK-DRGSITVKVGASKHSFNLFK  398 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~-~~G~I~l~l~~~y~P~~~~~  398 (398)
                      |+|+| .+.|+++|++.+|++.+..|-.   ..+|...      .+.. ...+|.+.+.  +.|-..|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~------~G~~l~~atLfv~~~--~~~~~~~~  567 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR------AGKAYKNTRLLVSFA--LDPPYTFR  567 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC------CCCCCCCeEEEEEEE--EcCccccC
Confidence            99999 8899999999999999977532   3455431      2222 3467888888  77765543

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.91  E-value=6.4e-09  Score=105.41  Aligned_cols=95  Identities=25%  Similarity=0.329  Sum_probs=78.9

Q ss_pred             CcEEEEEEeeeeecc----cC--cCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915          263 QGKVAVTIVKANNLK----NM--EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~----~~--d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v  332 (398)
                      ...|.|+|+.+.+++    ..  +.....||||++.+.+    ..+.+|+++.++.||.|||+|+|.+..++-..++|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            457999999998742    11  1234579999999853    2467899999999999999999999887778899999


Q ss_pred             EEcc-CCCCceeEEEEEECccccccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADT  357 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~  357 (398)
                      +|+| ...|+++|++.+|++.+..|-
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy  556 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI  556 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc
Confidence            9999 788999999999999998764

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.86  E-value=1.2e-08  Score=103.79  Aligned_cols=116  Identities=28%  Similarity=0.422  Sum_probs=88.4

Q ss_pred             EEEEEEeeeeecccC-c---CCCCCCcEEEEEEcc----eeeEecc-ccCCCCCceeccEEEEEeecCCCCeEEEEEEEc
Q 015915          265 KVAVTIVKANNLKNM-E---MIGKSDPYAVVHIKP----LFKVKTN-VVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK  335 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~-d---~~g~~dpyv~v~~~~----~~~~kT~-~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~  335 (398)
                      +|.|+|.++++.... +   ....+||||.+++.+    ..+.+|+ +..++-||.|+|+|+|.+..++-.-++|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            699999999965543 2   235689999999854    2457888 567799999999999999998888999999999


Q ss_pred             c-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      | .++|||+|+..+|++++..|-.+   .+|...     ....-..-+|-+.++
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~-----~G~~~~~asLfv~i~  742 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSR-----EGEALSSASLFVRIA  742 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee---eeecCC-----CCccccceeEEEEEE
Confidence            9 88999999999999999876432   344321     111223456666666

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.79  E-value=8.5e-09  Score=103.40  Aligned_cols=125  Identities=22%  Similarity=0.287  Sum_probs=97.5

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcce---eeEeccccCCCCCceeccEEEEEeecC---------------CCC
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL---FKVKTNVVDNNLNPVWNQTFELIAEDK---------------ETQ  326 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~  326 (398)
                      -+.+++.+++++.+.+ ++.+|||+.+...+.   ...+|++++.|.+|.|+|.|+|.+...               ...
T Consensus       132 ~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l  210 (800)
T KOG2059|consen  132 GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML  210 (800)
T ss_pred             cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence            3444455566665554 466999999988642   236899999999999999999988543               345


Q ss_pred             eEEEEEEE-cc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          327 SLIFEVFD-KD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       327 ~L~v~v~d-~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      .+++++|+ .+ ...++|+|++.+++..+........|+.|.+..+..+..++..-|.+++.++  |.
T Consensus       211 ~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~--y~  276 (800)
T KOG2059|consen  211 EIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVT--YT  276 (800)
T ss_pred             eEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEE--ee
Confidence            78899999 44 6679999999999999987667789999998876666566777899999999  75

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.79  E-value=1.8e-08  Score=102.10  Aligned_cols=92  Identities=25%  Similarity=0.378  Sum_probs=78.4

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-----eeeEeccccCCCCCceec-cEEEEEeecCCCCeEEEEEEEcc-
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWN-QTFELIAEDKETQSLIFEVFDKD-  336 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~~~~~L~v~v~d~d-  336 (398)
                      -.|.|.|+.|++|+..+ .|-..|||++.+-+     ...++|.+..|++||+|| |.|+|.+.+++-..|++.|+|.| 
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            57889999999999554 45667999999843     234556677899999999 99999999998889999999999 


Q ss_pred             CCCCceeEEEEEECcccccc
Q 015915          337 IGQDKRLGIVKLPLIDLEAD  356 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~  356 (398)
                      ++...|||+|..|+..+..+
T Consensus      1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             cCCcceeeeeecchhhhhcc
Confidence            88888999999999998765

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.65  E-value=7.2e-08  Score=94.66  Aligned_cols=118  Identities=25%  Similarity=0.385  Sum_probs=96.1

Q ss_pred             CcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcceeeEeccccCCCCCceec-cEEEEEeecC--CCCeEEEEEEEcc-C
Q 015915          263 QGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWN-QTFELIAEDK--ETQSLIFEVFDKD-I  337 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~--~~~~L~v~v~d~d-~  337 (398)
                      -|.|-|+|..|++|+-+|.. ...|.||++++.. ..+||.+..+++||.|| +.|.|.+.+.  .+..|.+++.|+| .
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            37889999999999998853 4568999999997 68999999999999999 5688888653  4568999999999 9


Q ss_pred             CCCceeEEEEEECccccccc----------ccceEEecccccccccccCCCcccEEEEEEe
Q 015915          338 GQDKRLGIVKLPLIDLEADT----------PKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~----------~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +.+|-+|.+.++++.+.-+.          ....|++...       .-...+|+|.+-+.
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifd-------tihgirgeinvivk  134 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFD-------TIHGIRGEINVIVK  134 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecce-------ecccccceeEEEEE
Confidence            99999999999998875322          2357888754       22346899888776

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=3.7e-08  Score=91.03  Aligned_cols=138  Identities=26%  Similarity=0.359  Sum_probs=101.3

Q ss_pred             CccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEE--EEeec-CCCC
Q 015915          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE--LIAED-KETQ  326 (398)
Q Consensus       254 d~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~--~~v~~-~~~~  326 (398)
                      .+..+|......+..++.+|++|+.++..+..|||+++.+.+    ..+.+|++..+++||.|+|+-.  +...+ ....
T Consensus        83 ~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K  162 (362)
T KOG1013|consen   83 EFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLK  162 (362)
T ss_pred             hhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhh
Confidence            345566777889999999999999999999999999999875    2347888999999999998643  33332 2345


Q ss_pred             eEEEEEEEcc-CCCCceeEEEEEECcccccccccc--eEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          327 SLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE--AELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       327 ~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~--~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      .+++.+.|.+ +..+++.|+..+++..+.....+.  .|+.-..+..........++|+|.+++.  |-.
T Consensus       163 ~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~--~~s  230 (362)
T KOG1013|consen  163 VLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLA--YSS  230 (362)
T ss_pred             hhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeec--cCc
Confidence            6788999999 889999999999999988766543  2322111111111122367899999998  743

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.41  E-value=1.6e-07  Score=97.72  Aligned_cols=91  Identities=30%  Similarity=0.417  Sum_probs=80.8

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      -...++|+|++|-+|.+.|..|.+|||+.+.+++. ..-++..+.+|+||+|++.|++....+....+.++|||+| .+.
T Consensus       611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~  690 (1105)
T KOG1326|consen  611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ  690 (1105)
T ss_pred             ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence            34577899999999999999999999999999873 2356778999999999999998888777788999999999 999


Q ss_pred             CceeEEEEEECcc
Q 015915          340 DKRLGIVKLPLID  352 (398)
Q Consensus       340 d~~lG~~~i~l~~  352 (398)
                      |+.+|+..++|+.
T Consensus       691 d~~iget~iDLEn  703 (1105)
T KOG1326|consen  691 DEKIGETTIDLEN  703 (1105)
T ss_pred             cchhhceehhhhh
Confidence            9999999999876

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.34  E-value=4e-07  Score=95.94  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=88.1

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEE---eecCCCCeEEEEEEE
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI---AEDKETQSLIFEVFD  334 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~---v~~~~~~~L~v~v~d  334 (398)
                      ..|+|.|-|..|++|.-..-+..+||||+.++.+    ..+.||+++.+|.||+|||.....   ........|.++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            5899999999999996554466789999999976    346899999999999999986533   333445789999999


Q ss_pred             cc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          335 KD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       335 ~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      .+ ...+.++|.+.++|.++....+...|+.|.
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            99 889999999999999998877777899874

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=9.2e-06  Score=81.12  Aligned_cols=106  Identities=30%  Similarity=0.358  Sum_probs=88.6

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEc-c-----eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEEE
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK-P-----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEV  332 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~-~-----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~v  332 (398)
                      ....++|+|+.|.+|+-. ..|.-.||+.+.+- +     .+++.|+++.++-.|.+||+|.|.+.+   ++...|.+.|
T Consensus      1123 gehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1123 GEHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred             CcceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEee
Confidence            345789999999999765 35777899999873 3     356788999999999999999999865   3566899999


Q ss_pred             EEcc-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      .|+. ...|..+|.+.++|.++...++...|++|..+
T Consensus      1202 KDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred             hhheeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence            9999 77888999999999999998888899998653

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=3.3e-06  Score=78.29  Aligned_cols=89  Identities=26%  Similarity=0.344  Sum_probs=74.7

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeEEEEEEE
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVFD  334 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~v~v~d  334 (398)
                      ....-+.|++++|.+|..+|.+|.+|||+..++.+    .-+++|++.++++||.||++|.+.+..  .....+.+.+||
T Consensus       230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd  309 (362)
T KOG1013|consen  230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD  309 (362)
T ss_pred             cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence            45677899999999999999999999999999865    246789999999999999999888753  345688999999


Q ss_pred             cc-CCCCceeEEEEEE
Q 015915          335 KD-IGQDKRLGIVKLP  349 (398)
Q Consensus       335 ~d-~~~d~~lG~~~i~  349 (398)
                      .+ .+..+++|-....
T Consensus       310 ~~~G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  310 YDIGKSNDSIGGSMLG  325 (362)
T ss_pred             cCCCcCccCCCccccc
Confidence            99 6678888875543

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=98.04  E-value=2.7e-05  Score=78.33  Aligned_cols=231  Identities=17%  Similarity=0.276  Sum_probs=150.6

Q ss_pred             cCCCCcceeCCCCcchHHH---------HHHHHhHhhh--HHHHHHHHHHHhH----HHHHHhcC-CCCcceEEEeEEec
Q 015915           55 GDNFPVWISFPVYEQVKWL---------NKELSKLWPF--VADAAELVIKESV----EPLLEEYR-PPGITSLKFSKLSL  118 (398)
Q Consensus        55 ~~~~p~w~~~~d~E~~~Wl---------N~~l~~~Wp~--~~~~~~~~~~~~l----~~~l~~~~-p~~~~~i~~~~~~l  118 (398)
                      +...|.|...  .|.-+|+         |.++...+.-  ...+....+.+.+    +..+.... ..-++.+.+.++.+
T Consensus        79 ~~~~~t~~~~--~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elEl  156 (1051)
T KOG3532|consen   79 PEELRTFLKS--GEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELEL  156 (1051)
T ss_pred             cccccccccc--cccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhh
Confidence            3457888886  3344454         4555554431  1222223333333    33333322 23689999999999


Q ss_pred             CCCCCeeeeEEEEEcC------------C-------------CeEEEEEEEEEeCCCcEEEEEEeeeeeeEEEEEEEEEE
Q 015915          119 GNVAPKIEGIRVQSLK------------Q-------------GQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQV  173 (398)
Q Consensus       119 G~~pP~i~~ir~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~~~~~~~~v~v~~l~~  173 (398)
                      |.+.|.+++.+++..+            +             ..+.+=.|+.|.|+..-++.+....+..-.+.|+-.+.
T Consensus       157 g~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l  236 (1051)
T KOG3532|consen  157 GTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKL  236 (1051)
T ss_pred             ccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEe
Confidence            9999999999997621            1             12345578889998877777666444445566777889


Q ss_pred             EEEEEEEEEecCCCCccceEEEEeecCCcceEEEEEeecCcCccccccHHHHHHHHHHHHHhhhcCCCCeeee--ecCC-
Q 015915          174 FTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVV--PIGG-  250 (398)
Q Consensus       174 ~g~~Rv~~~l~~~~P~~~~~~vsf~~~P~p~id~~~~~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~i--pl~~-  250 (398)
                      +|.+|+.+..   .|+ ..++++|.+.|..+.|...+..|-.+..  .+.+.|.+.++..+.....||++.--  |... 
T Consensus       237 ~Gm~r~~~~r---~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~  310 (1051)
T KOG3532|consen  237 TGMVRVILSR---QPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPN  310 (1051)
T ss_pred             ccceeEEEEe---ccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccC
Confidence            9999999852   344 6789999999766666666555443433  35677888888899999999995421  1110 


Q ss_pred             ----C-CcCccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc
Q 015915          251 ----I-PVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP  295 (398)
Q Consensus       251 ----~-~~d~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~  295 (398)
                          . +.+.+..-..+.|.+.|++.++..|...  .++..-||.+.+.+
T Consensus       311 ~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  311 PIFQASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES  358 (1051)
T ss_pred             cccccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence                0 1112222236799999999999877654  47888999998864

>PLN02964 phosphatidylserine decarboxylase

Probab=97.94  E-value=1.3e-05  Score=82.71  Aligned_cols=90  Identities=23%  Similarity=0.374  Sum_probs=74.6

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCC
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQD  340 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d  340 (398)
                      -.|+..+++++|+    ++   ..|+|..+-.-+.+.+||.+.++|+||+||+...|.+...+....++.|||++ ++++
T Consensus        52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n  124 (644)
T PLN02964         52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN  124 (644)
T ss_pred             ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence            4799999999997    33   35887666544447999999999999999999999887666666799999999 9999


Q ss_pred             ceeEEEEEECcccccccc
Q 015915          341 KRLGIVKLPLIDLEADTP  358 (398)
Q Consensus       341 ~~lG~~~i~l~~l~~~~~  358 (398)
                      +.+|.+.+++.++...+.
T Consensus       125 ~lv~~~e~~~t~f~~kqi  142 (644)
T PLN02964        125 TLVGYCELDLFDFVTQEP  142 (644)
T ss_pred             HhhhheeecHhhccHHHH
Confidence            999999999888765443

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.84  E-value=3.9e-05  Score=76.45  Aligned_cols=114  Identities=25%  Similarity=0.443  Sum_probs=78.9

Q ss_pred             EeeeeecccCcCCCCCCcEEEEEEc--c---eeeEeccccCCCCCceeccEEEEEeec----CCCCeEEEEEEEcc-CCC
Q 015915          270 IVKANNLKNMEMIGKSDPYAVVHIK--P---LFKVKTNVVDNNLNPVWNQTFELIAED----KETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       270 V~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~kT~~~~~t~nP~Wne~f~~~v~~----~~~~~L~v~v~d~d-~~~  339 (398)
                      ..+|++|.++|.++++|||..++-.  .   ...++|.++++++||.|.+ |.+....    .....+.+.+||++ .++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            3568999999999999999998753  1   2458999999999999997 3333321    23467889999999 888


Q ss_pred             CceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEE
Q 015915          340 DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITV  385 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l  385 (398)
                      ++++|.+..++.++.. ........+.......++++.+..|++.+
T Consensus       221 ~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l  265 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE-PGSPNQIMLINPKKKAKKKSYKNSGQLIL  265 (529)
T ss_pred             cCceeEecccHHHhcc-cCCcccccccChhhhhhhhcccccceEEe
Confidence            9999999999999876 23333333322222122233345666554

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.68  E-value=7.7e-05  Score=60.39  Aligned_cols=99  Identities=24%  Similarity=0.382  Sum_probs=72.8

Q ss_pred             EEEEEeeeeecccCc---------C----CCCCCcEEEEEEc---ceeeEeccccCCCCCceeccEEEEEee--------
Q 015915          266 VAVTIVKANNLKNME---------M----IGKSDPYAVVHIK---PLFKVKTNVVDNNLNPVWNQTFELIAE--------  321 (398)
Q Consensus       266 L~V~V~~a~~L~~~d---------~----~g~~dpyv~v~~~---~~~~~kT~~~~~t~nP~Wne~f~~~v~--------  321 (398)
                      |.|.|++|.+|+...         .    .-.-++|+++.+.   ..+..+|+++.++.-|.|+.+++|.++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            457788888886421         1    1225899999864   345789999999999999999999874        


Q ss_pred             c-------CCCCeEEEEEEEcc-C----------CCCceeEEEEEECcccccc-cccceEEe
Q 015915          322 D-------KETQSLIFEVFDKD-I----------GQDKRLGIVKLPLIDLEAD-TPKEAELR  364 (398)
Q Consensus       322 ~-------~~~~~L~v~v~d~d-~----------~~d~~lG~~~i~l~~l~~~-~~~~~~~~  364 (398)
                      .       .+...+.++||..+ .          .+|-.||.+.+|+.++... .+...|++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p  142 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYP  142 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence            1       23457889999876 2          2355899999999998753 34567775

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.21  E-value=7.2e-05  Score=78.46  Aligned_cols=102  Identities=26%  Similarity=0.283  Sum_probs=78.6

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeec---------CCCCeEEEEE
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED---------KETQSLIFEV  332 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---------~~~~~L~v~v  332 (398)
                      ..-.++++|.+|+.|...|..+.+|||+.+..-+ +.+.|.++.+|+||.|+++..|.--.         ..-..+.+++
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~  282 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV  282 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence            4556788899999999999999999999998877 57899999999999999987664211         1124678999


Q ss_pred             EEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      ||.| .+.++++|+......-... ...-.|++.
T Consensus       283 yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~  315 (1105)
T KOG1326|consen  283 YDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPT  315 (1105)
T ss_pred             ehhhhhchHHhhcccccceEEEec-CCccceEEe
Confidence            9999 9999999998765444433 233345554

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.16  E-value=0.00056  Score=51.55  Aligned_cols=95  Identities=17%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             EEEEeeeeecccCcCCCC-CCcEEEE--EEcceeeEeccccCCCCCceeccEEEEEeec--CCCCeEEEEEEEccCCCCc
Q 015915          267 AVTIVKANNLKNMEMIGK-SDPYAVV--HIKPLFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVFDKDIGQDK  341 (398)
Q Consensus       267 ~V~V~~a~~L~~~d~~g~-~dpyv~v--~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~v~v~d~d~~~d~  341 (398)
                      -++++.|+||.-....|. ..-|++=  .+.+...+||++.....||+|.|+|.|.+.-  ...-.|-++|+. ...+.+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe   80 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR   80 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence            478899999865443332 2234432  3333356899999999999999999987743  334567788887 466778


Q ss_pred             eeEEEEEECcccccccccceEE
Q 015915          342 RLGIVKLPLIDLEADTPKEAEL  363 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~~~~~~~~  363 (398)
                      .+|.+.+.++++..+ +.++|.
T Consensus        81 ~iG~~sL~l~s~gee-E~~HW~  101 (103)
T cd08684          81 TIGECSLSLRTLSTQ-ETDHWL  101 (103)
T ss_pred             eeeEEEeecccCCHH-Hhhhhh
Confidence            999999999998654 334454

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.00082  Score=63.78  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=84.0

Q ss_pred             CCCcEEEEEEeeeeecccCcC-CCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEc
Q 015915          261 KPQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK  335 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~  335 (398)
                      ...|.+.|.+++|++|..+.. ...++|||++++.+    ..+.+|+...+|++|-+.....|.-.. ....|.+.+|..
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEEecc
Confidence            468999999999999976542 34689999999854    245688888899999777766665544 467899999953


Q ss_pred             c--CCCCceeEEEEEECccccccc-ccceEEecccc
Q 015915          336 D--IGQDKRLGIVKLPLIDLEADT-PKEAELRLLPS  368 (398)
Q Consensus       336 d--~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~  368 (398)
                      -  ...+.|+|.+.+-++++.... ....|+++.+.
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            3  777889999999999998766 56789998753

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.81  E-value=0.0012  Score=63.24  Aligned_cols=120  Identities=23%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEc----ceeeEeccccCCCCCceeccEEEEEeecC-----------CCC
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK----PLFKVKTNVVDNNLNPVWNQTFELIAEDK-----------ETQ  326 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-----------~~~  326 (398)
                      ....|++.|+++.+++.....--.|-|+.+..-    ..++.+|.++++|.+|.|+|.|.+.+..-           ...
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            455677778888877644322234667776542    23567899999999999999999988541           123


Q ss_pred             eEEEEEEEcc--CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          327 SLIFEVFDKD--IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       327 ~L~v~v~d~d--~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      .+.|++|.+.  +.+|.++|.+.+.+.-|...-.....++|..       ..+...|.+.+++.
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-------GRK~vGGkLevKvR  501 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-------GRKAVGGKLEVKVR  501 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-------cccccCCeeEEEEE
Confidence            6889999998  7889999999999999987666666777653       22334678777776

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.64  E-value=0.036  Score=47.03  Aligned_cols=127  Identities=10%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             CCcEEEEEEeeeeecccC-c-CCCCCCcEEEEE--EcceeeEeccccCCCCCceeccEEEEEeecCC-------------
Q 015915          262 PQGKVAVTIVKANNLKNM-E-MIGKSDPYAVVH--IKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-------------  324 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~-d-~~g~~dpyv~v~--~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-------------  324 (398)
                      ....|+++|..++-.... + ..+..+.-..++  +++ ++++|+.+..+.+|.|+|.|-|.+....             
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            455688888887743221 1 113444444444  455 7999999999999999999999985432             


Q ss_pred             CCeEEEEEEEcc-CCCCceeEEEEEECccccccccc--ceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          325 TQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK--EAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       325 ~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      .+.+++.|...| .+...++|.-.++...+...+..  ....+|...    ....+...|.+.+++.  ..|..
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~----~~e~kv~~GiL~l~lE--LlP~~  153 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV----GPESKVPVGILDLRLE--LLPNL  153 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc----CCCCccceeEEEEEEE--eecCC
Confidence            346778888777 55668999999999988776654  444555431    1122346899999999  77753

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.36  E-value=0.091  Score=45.02  Aligned_cols=88  Identities=18%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFD  334 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d  334 (398)
                      ...++|+|++++++.-.+   .+|-|+.+.+  ++..   ...|+.+.. .++.|||...|.+.  + +....|.+++|+
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence            356889999999887543   4678888865  3311   123443333 67999999888763  2 345689999999


Q ss_pred             cc-CC----CCceeEEEEEECcccc
Q 015915          335 KD-IG----QDKRLGIVKLPLIDLE  354 (398)
Q Consensus       335 ~d-~~----~d~~lG~~~i~l~~l~  354 (398)
                      .. ..    ....+|.+.++|-+..
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEECCC
Confidence            76 22    2246999999997744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=95.82  E-value=0.016  Score=58.23  Aligned_cols=84  Identities=29%  Similarity=0.409  Sum_probs=62.3

Q ss_pred             eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-----CCCCceeEEEEEECcccccccccceEEecccccccc
Q 015915          298 KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-----IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDML  372 (398)
Q Consensus       298 ~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-----~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~  372 (398)
                      ..+|.++.+.+||.|.+.|.+....+..|.++++++|.+     ...++|+|++...++.+........-+.+.+     
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-----  116 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-----  116 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence            458999999999999999988887778899999999977     3567899999999999886544332222221     


Q ss_pred             cccCCCcccEEEEEEe
Q 015915          373 KIKDKKDRGSITVKVG  388 (398)
Q Consensus       373 ~~~~~~~~G~I~l~l~  388 (398)
                        ......|+|.++..
T Consensus       117 --~~~~~~g~iti~ae  130 (529)
T KOG1327|consen  117 --GKNAGSGTITISAE  130 (529)
T ss_pred             --CccCCcccEEEEee
Confidence              12334567766654

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.82  E-value=0.019  Score=60.14  Aligned_cols=87  Identities=25%  Similarity=0.377  Sum_probs=66.8

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc------eeeEeccccC-CCCCceeccE-EEEE-eecCCCCeEEEEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVD-NNLNPVWNQT-FELI-AEDKETQSLIFEVF  333 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~kT~~~~-~t~nP~Wne~-f~~~-v~~~~~~~L~v~v~  333 (398)
                      .+.+.|+|+++.-|..++    ...||.+.+-+      ...+||+++. ++.||+|+|+ |.|. |--++-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            578899999999997654    45899998742      2457888765 5899999975 5554 22234568999999


Q ss_pred             EccCCCCceeEEEEEECcccccc
Q 015915          334 DKDIGQDKRLGIVKLPLIDLEAD  356 (398)
Q Consensus       334 d~d~~~d~~lG~~~i~l~~l~~~  356 (398)
                      +..   ..++|+-.+|++.+..+
T Consensus       778 eEg---gK~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  778 EEG---GKFIGQRILPVDGLNAG  797 (1189)
T ss_pred             ccC---CceeeeeccchhcccCc
Confidence            964   56999999999999875

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.65  E-value=0.41  Score=40.02  Aligned_cols=120  Identities=21%  Similarity=0.280  Sum_probs=74.0

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEccee--eEecccc-CCCCCceeccEEEEEeec--------CCCCeEEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF--KVKTNVV-DNNLNPVWNQTFELIAED--------KETQSLIFE  331 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~kT~~~-~~t~nP~Wne~f~~~v~~--------~~~~~L~v~  331 (398)
                      .-.+.+++++..+++.    ....-|+....+...  ..+|+.. ..+-.-.|||+|.+.+.-        .....+.+.
T Consensus         6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            3456788888888775    122334444333322  2334332 335567999999877621        133468899


Q ss_pred             EEEcc-CCCCceeEEEEEECccccccc--ccceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADT--PKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                      |+... .++...+|.+.++|.++....  .....++|..        ..+....++++++  +.+..-
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~--~~~~~~  139 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK--------CKKSNATLSISIS--LSELRE  139 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEE--EEECcc
Confidence            98875 333369999999999998753  3444555432        1245668888888  766543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=95.52  E-value=0.027  Score=52.42  Aligned_cols=81  Identities=14%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             CCCcEEEEEEeeeeecccCcC--CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C
Q 015915          261 KPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I  337 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~  337 (398)
                      .-.|+|.+++..+++|+-...  .-.-+-||++..+.+.+.||.+.....--.|.|+|+..+.+  ...+.+-||.|+ -
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq  125 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQ  125 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCch
Confidence            357999999999999975432  34568899999987777788877777777899999988875  357889999999 5


Q ss_pred             CCCcee
Q 015915          338 GQDKRL  343 (398)
Q Consensus       338 ~~d~~l  343 (398)
                      .++++.
T Consensus       126 ~RHKLC  131 (442)
T KOG1452|consen  126 RRHKLC  131 (442)
T ss_pred             hhcccc
Confidence            556543

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.48  E-value=0.21  Score=48.22  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=83.4

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEee-------cCCCCeEEEEEEEcc--
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-------DKETQSLIFEVFDKD--  336 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~-------~~~~~~L~v~v~d~d--  336 (398)
                      +.|+|.+|++.+...   .-.-.+..++.+ ....|..+..+-.|.||......+.       ......+++++|..|  
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng-~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG-ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC-ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            568899999987652   334566677776 5677888888999999988877663       234668999999988  


Q ss_pred             CCCCceeEEEEEECccc---ccc--cccceEEecccccccccccCCCcccEEEEEEe
Q 015915          337 IGQDKRLGIVKLPLIDL---EAD--TPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      .++.+.+|.+.++|...   ..+  ..+..|++|...-    ++-.+.+-+|.+.+.
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~----~~y~~~KPEl~l~l~  130 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSS----SKYKKHKPELLLSLS  130 (340)
T ss_pred             CCcceeccEEEEEccccccccccccccCCCeeEccccc----cccccCCccEEEEEE
Confidence            66778999999999998   544  3567899998631    122223446666666

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.20  E-value=0.35  Score=42.17  Aligned_cols=89  Identities=25%  Similarity=0.361  Sum_probs=61.0

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEc
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDK  335 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~  335 (398)
                      ..++|+|+++.++...+  ...+-|+.+.+  ++..   ...|+.+..+.++.|||...|.+.  + +....|.+.+|+.
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            46789999999987522  34566777644  3321   235555554567999999888763  3 3466899999986


Q ss_pred             c-CC----------------CCceeEEEEEECcccc
Q 015915          336 D-IG----------------QDKRLGIVKLPLIDLE  354 (398)
Q Consensus       336 d-~~----------------~d~~lG~~~i~l~~l~  354 (398)
                      . ..                ++..+|.+.++|-+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~  121 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK  121 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence            6 22                2468999999987744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.00  E-value=0.74  Score=35.24  Aligned_cols=85  Identities=22%  Similarity=0.264  Sum_probs=60.1

Q ss_pred             CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECcccccccccceE
Q 015915          283 GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAE  362 (398)
Q Consensus       283 g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~  362 (398)
                      |.++-.+++.+++.....|.-... .+..|++.|.+.+..  +..|.|.||=+|.  ..+-|...+.|++...    ..-
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~~----~~~   77 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQ   77 (98)
T ss_pred             cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhcc----cce
Confidence            447788889998766677765543 578999999999874  6799999998763  2466777788877322    111


Q ss_pred             EecccccccccccCCCcccEEEEEEe
Q 015915          363 LRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       363 ~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                                  .+-.+.|.+..++.
T Consensus        78 ------------~~lepqg~l~~ev~   91 (98)
T cd08687          78 ------------LDMEPQLCLVAELT   91 (98)
T ss_pred             ------------eccccccEEEEEEE
Confidence                        22345788888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.46  E-value=0.51  Score=40.25  Aligned_cols=90  Identities=19%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEE--cce---eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEc
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDK  335 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~  335 (398)
                      ..++|++....+....+ ....+-|+.+.+  ++.   ....|.......++.|||...|.+.  + +....|.+++|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35677788877765411 234566666654  332   1223433333468999999888763  2 3456899999998


Q ss_pred             c-CC--CCceeEEEEEECcccc
Q 015915          336 D-IG--QDKRLGIVKLPLIDLE  354 (398)
Q Consensus       336 d-~~--~d~~lG~~~i~l~~l~  354 (398)
                      + .+  ++..+|.+.++|-+..
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEccc
Confidence            8 33  5689999999998754

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.20  E-value=0.69  Score=39.71  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             CCCCcEEEEEE--cce---eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEcc-CCCCceeEEEEEECccc
Q 015915          283 GKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL  353 (398)
Q Consensus       283 g~~dpyv~v~~--~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l  353 (398)
                      ..+|-||.+.+  ++.   ....|+.+.-+..+.|||...|++.  + +.+..|.+++||.+ .++...+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45677777765  221   1235555555677899999888773  2 34568999999988 55778999999999775

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.09  E-value=0.68  Score=40.25  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccC----CCCCceeccEEEEEee--c-CCCCeEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVD----NNLNPVWNQTFELIAE--D-KETQSLIF  330 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~----~t~nP~Wne~f~~~v~--~-~~~~~L~v  330 (398)
                      ...+.|+|.++.+++........|-|+.+.+  ++..   ...|+...    -...+.|||...|.+.  + +....|.+
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            4567889999999887654445778888765  3321   12333221    1235779998888763  2 34568999


Q ss_pred             EEEEcc-CC---------CCceeEEEEEECcccc
Q 015915          331 EVFDKD-IG---------QDKRLGIVKLPLIDLE  354 (398)
Q Consensus       331 ~v~d~d-~~---------~d~~lG~~~i~l~~l~  354 (398)
                      .+|+.. ..         ++..+|.+.++|-+..
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~  120 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR  120 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence            999977 33         4578999999997754

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=90.17  E-value=6  Score=34.22  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=55.5

Q ss_pred             CCCCcEEEEEEcceeeEeccccC--CCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECccccc
Q 015915          283 GKSDPYAVVHIKPLFKVKTNVVD--NNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEA  355 (398)
Q Consensus       283 g~~dpyv~v~~~~~~~~kT~~~~--~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~  355 (398)
                      .+..-|+++.+.++...+|+...  ....-.+||.|.+.+... -+.+.+++|......+..|+.+.+|+-....
T Consensus        35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence            34567889999887777776543  344457789999999774 4689999999887788999999999866544

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=89.82  E-value=0.86  Score=48.63  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=77.9

Q ss_pred             CCcEEEEEEcceeeEeccccCCC-CCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccccccccceE
Q 015915          285 SDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAE  362 (398)
Q Consensus       285 ~dpyv~v~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~  362 (398)
                      .++|+.+.+......+|....+. .+|.|.+.|+....... ..+.+++-+.+ .+-...+|.+.++...+..+.....|
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~  216 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGW  216 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhccccccce
Confidence            48899998876556677777666 88999999988777653 47888888888 66588999999999999998777888


Q ss_pred             EecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915          363 LRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       363 ~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                      ++++..   .. ....+.-.+.+++.  |+|+.+
T Consensus       217 ~~Il~~---d~-~~~~~~~~~~~~~~--~~~~~~  244 (887)
T KOG1329|consen  217 FPILDN---DG-KPHQKGSNESLRLG--FTPMEK  244 (887)
T ss_pred             eeeecc---CC-ccccCCcccceEEe--eEeech
Confidence            887642   11 11112235677788  888765

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.38  E-value=3.5  Score=34.47  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=39.7

Q ss_pred             eccccCCC-CCceeccEEEEEee--c-CCCCeEEEEEEEcc-CCCC----ceeEEEEEECcccc
Q 015915          300 KTNVVDNN-LNPVWNQTFELIAE--D-KETQSLIFEVFDKD-IGQD----KRLGIVKLPLIDLE  354 (398)
Q Consensus       300 kT~~~~~t-~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d-~~~d----~~lG~~~i~l~~l~  354 (398)
                      .|+...-+ .++.|||...|.+.  + +....|.++||+.+ ...+    ..||.+.+++-+..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence            56655555 89999999888863  2 35668999999988 4444    69999999998864

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.04  E-value=3.8  Score=35.79  Aligned_cols=90  Identities=19%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEE--cce--eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEcc
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL--FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDKD  336 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~--~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d  336 (398)
                      ..++|+|.++.++ ..+......-||.+.+  +..  ...+|+....+.++.|||...|.+.  + +....|.+.||+..
T Consensus        10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            3567888887633 2221222234555533  321  1235555566778999998887763  2 34568999999863


Q ss_pred             -C----------------CCCceeEEEEEECcccc
Q 015915          337 -I----------------GQDKRLGIVKLPLIDLE  354 (398)
Q Consensus       337 -~----------------~~d~~lG~~~i~l~~l~  354 (398)
                       .                .++..||-+.+.|-+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~  123 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR  123 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEcCC
Confidence             1                12567888999887744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=88.74  E-value=2.4  Score=37.24  Aligned_cols=56  Identities=23%  Similarity=0.413  Sum_probs=34.6

Q ss_pred             eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc--CCCC--ceeEEEEEECcc
Q 015915          297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD--IGQD--KRLGIVKLPLID  352 (398)
Q Consensus       297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d--~~~d--~~lG~~~i~l~~  352 (398)
                      ..+.|.+..++.+|.|+|+|.+.+...  ...-|.|++++..  .+++  ..+|.+.+||-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            356788888899999999999888643  3456888999877  2222  699999999988

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=87.55  E-value=5.7  Score=35.01  Aligned_cols=56  Identities=25%  Similarity=0.330  Sum_probs=41.4

Q ss_pred             eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-C-CC-CceeEEEEEECcc
Q 015915          297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-I-GQ-DKRLGIVKLPLID  352 (398)
Q Consensus       297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~-~~-d~~lG~~~i~l~~  352 (398)
                      ..++|.+...+.+|.|+|++.+.+...  ...-|.++++... . .+ ....|.+.+||-+
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            357888899999999999999888543  3446778777655 2 22 2679999999844

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=87.26  E-value=4.7  Score=35.68  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc--CCCC---ceeEEEEEECc
Q 015915          297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD--IGQD---KRLGIVKLPLI  351 (398)
Q Consensus       297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d--~~~d---~~lG~~~i~l~  351 (398)
                      ..++|.+...+.+|.|+|++.+.+...  ...-|.++++...  ..+|   ...|.+.+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            457888888899999999999888543  3456788887755  2333   57899999985

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=85.71  E-value=4.2  Score=32.33  Aligned_cols=92  Identities=18%  Similarity=0.155  Sum_probs=46.9

Q ss_pred             EEEEEcceeeEeccccCCCCCceeccEEEEEeecC-------CCCeEEEEEEEccCCCCceeEEEEEECcccccccc--c
Q 015915          289 AVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-------ETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTP--K  359 (398)
Q Consensus       289 v~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-------~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~--~  359 (398)
                      |....-.-+.+.|.++. +.+|.+|-+-.+.|...       .+..+.++++..-......+|.+.+++.++....+  .
T Consensus         3 ct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i   81 (107)
T PF11618_consen    3 CTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERI   81 (107)
T ss_dssp             EEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--E
T ss_pred             EEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceE
Confidence            33333333456777776 88999998887777431       34578999988664446789999999999986544  2


Q ss_pred             ceEEecccccccccccCCCcccEEEEEEe
Q 015915          360 EAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       360 ~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      .....+..       .++..-|.|...++
T Consensus        82 ~~~~~l~g-------~~~~~~g~l~y~~r  103 (107)
T PF11618_consen   82 HGSATLVG-------VSGEDFGTLEYWIR  103 (107)
T ss_dssp             EEEEEE-B-------SSS-TSEEEEEEEE
T ss_pred             EEEEEEec-------cCCCeEEEEEEEEE
Confidence            23333432       33447898888776

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=82.37  E-value=7.3  Score=30.44  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             EEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEcc
Q 015915          266 VAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDKD  336 (398)
Q Consensus       266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d  336 (398)
                      +.+.+...++.........++-|+.+.+  ++..   ...|+.+.-..++.|||...|++.  + +....|.+++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            4556666666544332223578888865  3311   224555554566899998888763  2 34568999999865

Outlier of C2 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		4e-08
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		4e-08
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		6e-08
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		6e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		1e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		2e-06
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		3e-05
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		4e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		4e-05
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		5e-05
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		7e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		9e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-04
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		1e-04
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		2e-04
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		4e-04
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		4e-04
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		5e-04
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		6e-04
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		6e-04

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
           R ++  G    D  EL      L   G + VTI+KA+NLK M++ G SDPY    +    
Sbjct: 127 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 186
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
           + L K KT++  N LNP +N+   F++  E  E   L   V D D IG ++ +G+ ++
Sbjct: 187 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
           R ++  G    D  EL      L   G + VTI+KA+NLK M++ G SDPY    +    
Sbjct: 126 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
           + L K KT++  N LNP +N+   F++  E  E   L   V D D IG ++ +G+ ++
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE---L 318
           +  TI++A  LK M+  G +DPY  +H+ P      K++T  + N  NPVWN+T +   +
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
             ED + ++L   V D+D  G ++ +G  +  L  L+A+  K
Sbjct: 91  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 132

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
           +    +  TI++A  LK M+  G +DPY  +H+ P      K++T  + N  NPVWN+T 
Sbjct: 24  QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 83
Query: 317 E---LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
           +   +  ED + ++L   V D+D  G ++ +G  +  L  L+A+  K
Sbjct: 84  QYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 130

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 247 PIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI------KPLFKVK 300
           P+ G+  D  E  +     + V +V   +L   ++ G SDPY  + +      + L  V+
Sbjct: 9   PVYGLSEDEGESRI-----LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQ 63
Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTP 358
           T  +   LNP WN+ F     +     L+FEVFD++ + +D  LG V +PL  L  + P
Sbjct: 64  TKTIKKTLNPKWNEEFYFRV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQTFELIA 320
           V V ++    L   +++G SDPY  V +       L  V+T  +  +LNP WN+   L  
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI-LFR 80
Query: 321 EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
              +   L+FEVFD++ + +D  LG V +PL  L  + P+
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQT--FEL 318
           V V ++    L   +++G SDPY  V +       L  V+T  +  +LNP WN+   F +
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
           +    +   ++FEVFD++ + +D  LG V +PL  L  + P+
Sbjct: 70  LP---QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 108

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIA 320
           P G + V +V A  L++ + +   DPY  +  +   + K+NV +     P WN+TF    
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTV 66
Query: 321 EDKETQSLIFEVFDKDIG-QDKRLGIVKLPL 350
            +  T+ L  ++FDKD+G +D  +G   +PL
Sbjct: 67  SEGTTE-LKAKIFDKDVGTEDDAVGEATIPL 96

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIA 320
           K   K+++T+V A  L+  +  G SDPY  V +    K +T  +  NLNPVW + F    
Sbjct: 14  KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT-KKRTKTIYGNLNPVWEENFHFEC 72
Query: 321 EDKETQSLIFEVFDKD 336
            +  +  +   V D+D
Sbjct: 73  HN-SSDRIKVRVLDED 87

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQT--FEL 318
           +  + V I+KA  L   +  G SDP+  +++ P    K++T V   NLNP WN+T  FE 
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 319 IAEDKETQSLIF-EVFDKD-IGQDKRLGIVKLPL 350
              +K  Q +++ +V D D   ++  +G V +PL
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 265 KVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELI 319
           K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVWN+TFE I
Sbjct: 4   KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 320 AEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
            +  +   L   + D +   D+ LG     +  ++    KE
Sbjct: 64  LDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 104

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 258 LELKPQGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVW 312
           +E +   K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVW
Sbjct: 12  VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71
Query: 313 NQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           N+TFE I +  +   L   + D +   D+ LG     +  ++    KE
Sbjct: 72  NETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 119

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G++ V +++A  LK  +  GKS+PY  + +       T  + + LNP WN   +   +D 
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQ-SYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 324 ETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD 356
               L   +FD+D    D  LG  ++P+  +  +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTE 479

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQT 315
           S  ++K  G + V ++KA +L   +  GKSDP+ ++ +    +++T+ V  NLNP WN+ 
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKV 63
Query: 316 FELIAEDKETQSLIFEVFDKDIGQDK---RLGIVKLPLIDLEADTPK 359
           F    +D     L   VFD+D   DK    LG V +PL+ +    P 
Sbjct: 64  FTFPIKDIH-DVLEVTVFDED--GDKPPDFLGKVAIPLLSIRDGQPN 107

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FEL 318
           ++ VT+ +A NL  M+  G SDPY  + + P    L K KT  V   LNPVWN+T  F L
Sbjct: 21  EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 319 IAEDKETQSLIFEVFDKD 336
              D E + L  EV+D D
Sbjct: 81  KPGDVE-RRLSVEVWDWD 97

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 258 LELKPQGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVW 312
           +E +   K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVW
Sbjct: 12  VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71
Query: 313 NQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           N+TFE I +  +   L   + D +   D+ LG     +  ++    KE
Sbjct: 72  NETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 119

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQTF-- 316
           QG + V I++  +L  M+  G SDP+  + +KP      K KT +    LNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 317 ELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
           ++   D   +SL   V+D DIG+ +  +G  +L +         + E RL    + LK K
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-------SAKGE-RLKHWYECLKNK 147
Query: 376 DKK 378
           DKK
Sbjct: 148 DKK 150

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT--FELI 319
           + V I+KA NLK M++ G SDPY  V +    K + K KT     NLNP++N++  F++ 
Sbjct: 18  IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 320 AEDKETQSLIFEVFDKD 336
            E     ++I  V DKD
Sbjct: 78  TEKLRETTIIITVMDKD 94

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQTF-- 316
           QG + V I++  +L  M+  G SDP+  + +KP      K KT +    LNP +N+ F  
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 317 ELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
           ++   D   +SL   V+D DIG+ +  +G  +L +         + E RL    + LK K
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-------SAKGE-RLKHWYECLKNK 125
Query: 376 DKK 378
           DKK
Sbjct: 126 DKK 128

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
           K+ VT+  A NL  M+  G SDPY  + + P      K KT  + + LNP WN+  TF+L
Sbjct: 18  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 319 IAEDKETQSLIFEVFDKD 336
              DK+ + L  E++D D
Sbjct: 78  KPSDKD-RRLSVEIWDWD 94

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
           K+ VT+  A NL  M+  G SDPY  + + P      K KT  + + LNP WN+  TF+L
Sbjct: 17  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 319 IAEDKETQSLIFEVFDKD 336
              DK+ + L  E++D D
Sbjct: 77  KPSDKD-RRLSVEIWDWD 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-34
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-33
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	6e-33
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-32
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-32
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-30
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	9e-29
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-27
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-27
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-25
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-20
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-20
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-17
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-19
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-19
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-19
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	9e-19
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-18
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-18
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-18
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-17
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-17
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-17
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-17
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	6e-17
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-17
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	9e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-16
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	8e-16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-15
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-15
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-14
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-14
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-13
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	5e-13
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-11
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-09
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-05
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	5e-05

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  121 bits (306), Expect = 8e-34
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIA 320
            P G + V +V A  L++ + +   DPY  +  +   +           P WN+TF    
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 321 EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKD 379
            +  T+ L  ++FDKD   +D  +G   +PL  +  +         +       +KD++ 
Sbjct: 67  SEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV-------VKDEEY 118

Query: 380 RGSITVKV 387
           +G I V +
Sbjct: 119 KGEIWVAL 126

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  122 bits (307), Expect = 2e-33
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPV 311
           EL       V V ++    L   +++G SDPY  V +       L  V+T  +  +LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 312 WNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLD 370
           WN+         +   ++FEVFD++ + +D  LG V +PL  L  + P+           
Sbjct: 61  WNEEILFRVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119

Query: 371 M-LKIKDKKDRGSITVKV 387
           +  +    + +G + +K+
Sbjct: 120 LHPRSHKSRVKGYLRLKM 137

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  119 bits (301), Expect = 6e-33
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELI- 319
              G + V +  A+N+   +  GK DP   V  K   K KT  VDN LNPVWN+  E   
Sbjct: 4   GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-EKKKTKKVDNELNPVWNEILEFDL 61

Query: 320 --AEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKD 376
                  + SL   V D + IGQ+K +G   + L DL  D  +    +L+  L+    K 
Sbjct: 62  RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KG 118

Query: 377 KKDRGSITVKV 387
           +    +I + +
Sbjct: 119 QDTGATIDLVI 129

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  118 bits (298), Expect = 2e-32
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQT 315
           +    V V ++    L   +++G SDPY  V +       L  V+T  +  +LNP WN+ 
Sbjct: 17  ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76

Query: 316 FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDM-LK 373
                  ++   L+FEVFD++ + +D  LG V +PL  L  + P+           +  +
Sbjct: 77  ILFRVHPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135

Query: 374 IKDKKDRGSITVKV 387
               + +G + +K+
Sbjct: 136 SHKSRVKGYLRLKM 149

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  117 bits (294), Expect = 4e-32
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 264 GKVAVTIVKANNLKN---MEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFEL 318
            K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVWN+TFE 
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
           I +  +   L   + D +   D+ LG     +  ++    KE        
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 112

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  113 bits (284), Expect = 1e-30
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQT 315
           S  ++K  G + V ++KA +L   +  GKSDP+ ++ +    +++T+ V  NLNP WN+ 
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKV 63

Query: 316 FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKI 374
           F    +D     L   VFD+D       LG V +PL+ +    P    L+          
Sbjct: 64  FTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD------- 115

Query: 375 KDKKDRGSITVKV 387
            ++  +G I +++
Sbjct: 116 LEQAFKGVIYLEM 128

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  117 bits (294), Expect = 9e-29
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 252 PVDTSELELKPQGKVAVTIVKANNLKN---MEMIGKSDPYAVVHI--KPLFKVKTNVVDN 306
           P     +E +   K  V +++A  +      +M+   DPY  + I   P  + +T   +N
Sbjct: 6   PYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN 65

Query: 307 NLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
           ++NPVWN+TFE I +  +   L   + D +   D+ LG     +  ++    KE
Sbjct: 66  DINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 119

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  105 bits (263), Expect = 2e-27
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 250 GIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLN 309
            +     +   K   K+++T+V A  L+  +  G SDPY  V +    K +T  +  NLN
Sbjct: 3   AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLN 61

Query: 310 PVWNQTFELIAEDKETQSLIFEVFDKD------------IGQDKRLGIVKLPLIDLEADT 357
           PVW + F     +  +  +   V D+D               D  LG   + +  L  + 
Sbjct: 62  PVWEENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120

Query: 358 PKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
                L         +       G+I + +
Sbjct: 121 DVWYNLD-------KRTDKSAVSGAIRLHI 143

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  104 bits (262), Expect = 2e-27
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV-KTNVVDNNLNPVWNQTFELIAEDK 323
           K+ +T++ A NL   +     DP+A + +    +   T+ V N L+P WNQ ++L     
Sbjct: 6   KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL--YVG 63

Query: 324 ETQSLIFEVFDKDIGQDKR----LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKD 379
           +T S+   V++      K+    LG V+L    +        +   L  L+         
Sbjct: 64  KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLN--PSDTDAV 121

Query: 380 RGSITVKV 387
           RG I V +
Sbjct: 122 RGQIVVSL 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  101 bits (252), Expect = 1e-25
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 249 GGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNL 308
                  S   L  + ++ +T++ A   +N +      PY  V +      KT   +N  
Sbjct: 21  DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTN 79

Query: 309 NPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367
           +P W Q   +I        L F V+    +  D  LG   L + +       + E  ++ 
Sbjct: 80  SPKWKQPLTVIVTPV--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137

Query: 368 SLDMLKIKDKKDRGSITV 385
                  +  +  G +++
Sbjct: 138 LQLGGDKEPTETIGDLSI 155

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
              +  TI++A  LK M+  G +DPY  +H+ P      K++T  + N  NPVWN+T + 
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87

Query: 318 --LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365
             +  ED + ++L   V D+D  G ++ +G  +  L  L+A+  K   + L
Sbjct: 88  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 86.2 bits (213), Expect = 2e-20
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGK----------SDPYAVVHIKPLFKVKTNV 303
             S   +K  G + V I +A  L+      +           DPY  V +  +   +T+ 
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST 78

Query: 304 VDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAE 362
                 P +N+ F     D     L   VF +  +G D  +    L   +L   T     
Sbjct: 79  KQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDT 136

Query: 363 LRLLPSLDMLKIKDKKDRGSITVKV 387
                 L+          G + V +
Sbjct: 137 FEGWVDLE--------PEGKVFVVI 153

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 87.6 bits (217), Expect = 1e-19
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQT--FE 317
              ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+   F+
Sbjct: 17  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 76

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDM----- 371
           +   +   ++L+  V+D D   +   +G  K+P+  ++     E    L  +        
Sbjct: 77  VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKL 136

Query: 372 ----LKIKDKKDRGSITVKV 387
                 ++     G +TV +
Sbjct: 137 GDICFSLRYVPTAGKLTVVI 156

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 227 DDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQ-GKVAVTIVKANNLKNMEMIGKS 285
                 +  +              +      L   P  GK+ V I++A NLK M++ G S
Sbjct: 112 TVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLS 171

Query: 286 DPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IG 338
           DPY  +H+      L K KT +  N LNP +N++  FE+  E  +   ++  V D D IG
Sbjct: 172 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231

Query: 339 QDKRLGIVKLPL 350
           ++  +G V +  
Sbjct: 232 KNDAIGKVFVGY 243

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFEL 318
           +  + V +  A NL  M+  G SDPY  + + P      K KT  +  +LNP WN+TF  
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 319 -IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE 360
            + E  + + L  E++D D   ++  +G +   + +L+      
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE--- 317
           +  + V I+KA  L   +  G SDP+  +++ P    K++T V   NLNP WN+TF    
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367
              E    + L  +V D D   ++  +G V +PL  ++    +     L P
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 82.1 bits (203), Expect = 5e-19
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE--L 318
             ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+ F   +
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100

Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
              +   ++L+  V+D D   +   +G  K+P+  ++     E    L  +
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 81.0 bits (200), Expect = 9e-19
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%)

Query: 264 GKVAVTIVKANNLKNMEMIGK-----------SDPYAVVHIKPLFKVKTNVVDNNLNPVW 312
           G + + I +A +LK      +            DPY  +++      +T       +P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 313 NQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAEL 363
           +  F     +   + +   VF    IG D  +    +   +L  +  +  E 
Sbjct: 66  HDEFVTDVCN--GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 80.9 bits (200), Expect = 1e-18
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE--L 318
             ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+ F   +
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
              +   ++L+  V+D D   +   +G  K+P+  ++     E    L  +
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 219 IPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQ-GKVAVTIVKANNLK 277
           +  + ++ +   D  +   +         +G +      L   P  G + VTI+KA+NLK
Sbjct: 109 LDNLLELAEQPPDRPLWRDILEGGSEKADLGELNF---SLCYLPTAGLLTVTIIKASNLK 165

Query: 278 NMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFE 331
            M++ G SDPY    +      L K KT++  N LNP +N+   F++  E  E   L   
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225

Query: 332 VFDKD-IGQDKRLGIVKLPL 350
           V D D IG ++ +G+ ++  
Sbjct: 226 VVDYDCIGHNEVIGVCRVGP 245

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.0 bits (205), Expect = 5e-18
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTF-- 316
               ++ V I++A +L   +  G SDPY  +++ P    K +T V    LNP++N+TF  
Sbjct: 17  YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAEL 363
            +   +   + L F V+D D   +   +G V L  +   A+ P +  L
Sbjct: 77  SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 124

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 79.0 bits (195), Expect = 6e-18
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-------------LFKVKTNVVDNNLN 309
            G + + I++A NL   +  G SDP+  V++ P              +K +T  V  +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 310 PVWNQTFE---LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365
           P WNQT     +  E    ++L   V+D D    +  LG V + L              L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

Query: 366 LP 367
             
Sbjct: 137 KE 138

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
              + V I+KA NLK M++ G SDPY  V +      + K KT     NLNP++N++  F
Sbjct: 15  ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
           ++  E     ++I  V DKD + ++  +G + L  
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW 109

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 249 GGIPVDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKV 299
           GGIP    EL +          + V ++KA +L   ++ G SDPY  V++      + K 
Sbjct: 10  GGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK 69

Query: 300 KTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
           KT+V     N V+N+   F++  E  E  S+ F V D +   +++ +G + L  
Sbjct: 70  KTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL---FKVKTNVVDNNLNPVWNQTFE-- 317
           + ++ VT ++A         G  D Y    +       + +T +    L+  W +     
Sbjct: 25  KAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
           L  E+  T +L   +   D   +    G ++L L              L  S
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 253 VDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTN 302
           V  + +++         + A+ I++ +NL  +           V + P         +T 
Sbjct: 27  VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTR 86

Query: 303 VVDNNLNPVWNQTFE--LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
            +D +   V+N+ F   +       ++L  +V   D    ++ LG  ++ L ++     +
Sbjct: 87  PLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGER 146

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
             ++ VTI+ A +L + E     +PY  ++  P      K +T  V   L P WNQTF  
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 318 --LIAEDKETQSLIFEVFDKDIGQDKR---LGIVKLPLIDLEADTPKE 360
             +   +   + L   ++D+   +++    LG + + L     D    
Sbjct: 80  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 76.7 bits (189), Expect = 6e-17
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
            GK+ V I++A NLK M++ G SDPY  +H+      L K KT +  N LNP +N++  F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
           E+  E  +   ++  V D D IG++  +G V +  
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 263 QGKVAVTIVKANNLKNM-EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF- 316
              + V + + + L    E   +S+PY   ++ P      K KT++  + +NP++++T  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81

Query: 317 -ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLD 370
            E+       ++L F V+     G++  LG  ++ +   + D   +  L L   + 
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 75.0 bits (185), Expect = 9e-17
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
             ++ VTI+ A +L + E     +PY  ++  P      K +T  V   L P WNQTF  
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 318 --LIAEDKETQSLIFEVFDKDIGQDKR---LGIVKLPLIDLEADTPKE 360
             +   +   + L   ++D+   +++    LG + + L     D    
Sbjct: 77  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
           QG + V I++  +L  M+  G SDP+  + +KP      K KT +    LNP +N+   +
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
           ++   D   +SL   V+D D    +  +G  +L +
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
            G + + ++   +L   +     +PY   ++ P      K KT +     NP +N+    
Sbjct: 19  NGTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77

Query: 318 --LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
                E    + L   V   + + ++  LG + LPL D           +L  +
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 263 QGKVAVTIVKANNLKNMEMIGK-SDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE-- 317
           +    V I +A  L  M+     SDPY  + I P    KVKT V+   L+P +++TF   
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 318 -LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
            +     +  +L F +   D   +D  +G V +PL  +E    K
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 12/117 (10%)

Query: 263 QGKVAVTIVKANNLKNMEMI-------GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWN 313
              + V +++A +L               S+PY  + + P      +T V      PV+ 
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE 84

Query: 314 QTF--ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367
           + +  E+   + + ++L+  V D D   +   +G V +PL +++          L+P
Sbjct: 85  ERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
           + K+ V +    NL        SDPY  +++ P      + KT+V    LNPV++Q+F+ 
Sbjct: 23  RNKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 318 -LIAEDKETQSLIFEVFDKD-IGQDKR--LGIVKLPLIDLEADTPKEAELRLLP 367
            +   + + ++L   V +        +  LG V + L   E          L  
Sbjct: 82  SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFEL 318
              + + I++   L + +  G  DPY  + + P    L   KT  V +  +P +++ F  
Sbjct: 26  DRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 319 -IAEDKETQSLIFEVFDKDI--GQDKRLGIVKLPLIDLE-ADTPKEAELRLLP 367
            + E+ + + L+  V+++     Q   +G +   +  L   D        LL 
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 263 QGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE 317
           +G++ V +++A +L           PY  V++      + K KT +    L+P++ Q+  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 318 LIAEDKETQSLIFEVF-DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
              E  + + L   V+ D   +     +G+ ++ L +L+  +      +L P 
Sbjct: 89  -FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 69.9 bits (170), Expect = 3e-13
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 267 AVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL-IAEDKET 325
            V+  +A +L   +    +D Y  V      + +T VV NN NP W    +         
Sbjct: 397 VVSNFRAEHL-WGDYTTATDAYLKVFFGGQ-EFRTGVVWNNNNPRWTDKMDFENVLLSTG 454

Query: 326 QSLIFEVFDKDIG-QDKRLGIVKLPL 350
             L  +V+D D G  D  LG      
Sbjct: 455 GPLRVQVWDADYGWDDDLLGSCDRSP 480

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 64.6 bits (157), Expect = 5e-13
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           V + KA      E   K + Y  + ++   K  T +      P W Q F       +   
Sbjct: 9   VGVKKAKFDGAQE---KFNTYVTLKVQN-VKSTT-IAVRGSQPSWEQDFMFEINRLDLG- 62

Query: 328 LIFEVFDKDIGQDKRLGIVKLPLIDL 353
           L  EV++K +  D  +G V +PL  +
Sbjct: 63  LTVEVWNKGLIWDTMVGTVWIPLRTI 88

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           V + KA      E   K + Y  + ++   +  T +      P W Q F       +   
Sbjct: 18  VGVKKAKFDGAQE---KFNTYVTLKVQN-VESTT-IAVRGSQPSWEQDFMFEINRLDLG- 71

Query: 328 LIFEVFDKDIGQDKRLGIVKLPLIDL-EADTPKEAE-LRLLPSLDMLKIKDKKDRG 381
           L  EV++K +  D  +G V +PL  + +++     E L L     M   +    + 
Sbjct: 72  LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 127

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 20/115 (17%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 259 ELKPQG---KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPV-WNQ 314
            L P+G    + V +   + L+     G++D  A V  +      + V++N  +   +++
Sbjct: 13  GLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFRG-QSFYSRVLENCEDVADFDE 66

Query: 315 TFE--LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366
           TF   + +     + L  ++F+   +  +K +G  ++ L  +  +   E    L+
Sbjct: 67  TFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLI 121

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
           +    G++ V +++A  LK  +  GKS+PY  + +       T  + + LNP WN   + 
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ-SYTTRTIQDTLNPKWNFNCQF 440

Query: 319 IAEDKETQSLIFEVFDKDI-GQDKRLGIVKLPLIDLEADTP-KEAELRLLPSLDMLKIKD 376
             +D     L   +FD+D    D  LG  ++P+  +  +   K    R L   ++     
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----- 495

Query: 377 KKDRGSITVKV 387
               G + V+ 
Sbjct: 496 --PTGEVWVRF 504

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 57/400 (14%), Positives = 125/400 (31%), Gaps = 126/400 (31%)

Query: 52  KICGDNFPVWISFPVY--EQVKWLNKELSKLWPFVADAAELVI-------KESVEPL-LE 101
           ++  DN  V+  + V   +    L + L +L P    A  ++I       K +   + L+
Sbjct: 118 RLYNDN-QVFAKYNVSRLQPYLKLRQALLELRP----AKNVLIDGVLGSGK-TW--VALD 169

Query: 102 EYRPPGITSLKFSK---LSLGNV-APKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVE 157
                 +      K   L+L N  +P+     +Q L      +D ++    D S      
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHS------ 220

Query: 158 AAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGS-- 215
               ++I +++  +Q    +R + +      C+  +V+  +   K        A   S  
Sbjct: 221 ----SNIKLRIHSIQ--AELRRLLKSKPYENCL--LVLLNVQNAK-----AWNAFNLSCK 267

Query: 216 --LTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIP---------------VDTSEL 258
             LT           T    +TD L       + +                   +D    
Sbjct: 268 ILLT-----------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 259 ELKPQGK----VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD---NNLNP- 310
           +L  +        ++I+   +++  + +   D +  V+   L    T +++   N L P 
Sbjct: 317 DLPREVLTTNPRRLSIIAE-SIR--DGLATWDNWKHVNCDKL----TTIIESSLNVLEPA 369

Query: 311 -------------------------VWN----QTFELIAEDKETQSLIFEVFDKDIGQDK 341
                                    +W         ++       SL+    +K   ++ 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EKQ-PKES 424

Query: 342 RLGIVKLPLIDLEADTPKEAEL--RLLPSLDMLKIKDKKD 379
            + I  +  ++L+     E  L   ++   ++ K  D  D
Sbjct: 425 TISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNV---VDNNLNPVWNQTFELIAE 321
            + + I++A  L       K   Y  + +  +   +T       +     W + FE    
Sbjct: 12  VLKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 322 DKETQSLIFEVFDKD----IGQDKRLGIVKLPLIDLEADTPKEA 361
                  +    D D      +   +G+V +P+  L      E 
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ 110

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 254 DTSELELKPQGKVAVTIVKANNL--KNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNN 307
             ++       ++ V I+    L   N       DP  +V I  +       +T V+ NN
Sbjct: 487 ALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNN 546

Query: 308 -LNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL 353
             NP W+  FE      +   + F V D D   ++  +G   +P   L
Sbjct: 547 GFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 594

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.87
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.87
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.87
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.86
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.85
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.85
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.83
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.83
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.82
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.8
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.78
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.78
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.78
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.78
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.77
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.77
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.77
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.76
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.76
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.75
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.75
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.75
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.74
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.74
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.74
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.74
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.72
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.72
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.71
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.7
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.69
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.69
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.69
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.64
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.61
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.56
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.56
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.48
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.47
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.3
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.19
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.16
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.15
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.07
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.95
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	92.03
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	86.28
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	85.91
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	82.73
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	82.48

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=164.19  Aligned_cols=129  Identities=32%  Similarity=0.445  Sum_probs=109.8

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC---CCCeEEEEEEEcc-
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVFDKD-  336 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~L~v~v~d~d-  336 (398)
                      ...|.|+|+|++|++|+..+. |.+||||++++.+ .+++|+++++++||.|||+|.|.+..+   ....|.++|||+| 
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS-CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC-EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            357899999999999999998 9999999999997 579999999999999999999999653   4578999999999 


Q ss_pred             CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915          337 IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                      .++|++||++.+++.++..+...+.|+++.+-.+   ..+....|+|+++++  |.|..-
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~---~~~~~~~G~l~l~~~--~~p~~~  136 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN---EKGQDTGATIDLVIG--YDPPSG  136 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC---TTCCEEEEEEEEEEE--ECCCBS
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccC---CCCCCCCCEEEEEEE--EECCCC
Confidence            8899999999999999988877788887332111   123356799999999  998653

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.87  E-value=3.2e-21  Score=164.36  Aligned_cols=125  Identities=28%  Similarity=0.532  Sum_probs=102.2

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEc
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK  335 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~  335 (398)
                      ...|.|+|+|++|++|+.++..|.+||||++++.+     ...++|+++++|+||.|||+|.|.+.+. ...|.++|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEEC
Confidence            57899999999999999999889999999999974     2578999999999999999999999864 57899999999


Q ss_pred             c-CCCCceeEEEEEECccccccccc------ceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPK------EAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~------~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      | .++|++||++.++++++..+...      ..|++|.+.     ....+..|+|+++++  |.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~i~l~l~--~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR-----SHKSRVKGYLRLKMT--YLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS-----STTCCCCSEEEEEEE--ECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc-----cCCCCcceEEEEEEE--EeC
Confidence            9 88999999999999999876543      489988642     123467899999999  987

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.87  E-value=1.4e-21  Score=163.23  Aligned_cols=124  Identities=26%  Similarity=0.456  Sum_probs=109.4

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCCCCeEEEEEEEcc-CC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IG  338 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~  338 (398)
                      .+.|.|+|+|++|++|+..+..|.+||||++++++ .+++|++++ +++||.|||+|.|.+.+ ....|.++|||+| .+
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC-ccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence            57899999999999999999889999999999988 478999998 89999999999999987 5679999999999 88


Q ss_pred             CCceeEEEEEECccccc-ccccceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915          339 QDKRLGIVKLPLIDLEA-DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       339 ~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                      +|++||++.+++.++.. +.....|++|.        .+++..|+|+++++  |.|...
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~--------~~~~~~G~i~l~l~--~~p~~~  133 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVV--------KDEEYKGEIWVALS--FKPSGP  133 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEE--------ETTEEEEEEEEEEE--EEECCS
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEee--------cCCccCEEEEEEEE--EEeCCC
Confidence            99999999999999944 44456788875        23467899999999  999764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=3.2e-21  Score=160.43  Aligned_cols=125  Identities=27%  Similarity=0.420  Sum_probs=108.3

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-  336 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-  336 (398)
                      .+..+.|.|+|+|++|++|+.++..|.+||||++++++ .+++|+++++++||.|||+|.|.+.+. ...|.++|||+| 
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~   84 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDG   84 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEET
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCC
Confidence            34578999999999999999999999999999999998 578999999999999999999999874 578999999999 


Q ss_pred             CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          337 IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      .++|++||++.+++.++..+.  ..|++|...     ...+...|+|+++++  |..
T Consensus        85 ~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~-----~~~~~~~G~i~l~i~--~~~  132 (133)
T 2ep6_A           85 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK-----DLEQAFKGVIYLEMD--LIY  132 (133)
T ss_dssp             TEEEEECCBCEEEGGGCCSSC--CEECCCBCS-----CTTSCCSSEEEEEEE--EEE
T ss_pred             CCCCCeeEEEEEEHHHccCCC--ceEEEeecC-----CCCCccceEEEEEEE--EEe
Confidence            888999999999999997643  578888642     123467899999999  753

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.85  E-value=3.8e-21  Score=163.89  Aligned_cols=114  Identities=23%  Similarity=0.269  Sum_probs=100.5

Q ss_pred             CCCcEEEEEEeeeeecccCcC----------CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEE
Q 015915          261 KPQGKVAVTIVKANNLKNMEM----------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIF  330 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v  330 (398)
                      ...|.|+|+|++|++|+++|.          .|.+||||++++++....+|+++++|+||.|||+|.|.+.+  .+.|.+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~  103 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLEL  103 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEEE
Confidence            568999999999999998873          26799999999988666799999999999999999999975  368999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccc----cccceEEecccccccccccCCCcccEEEEEEe
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEAD----TPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      +|||+| .++|++||++.++++++..+    ...+.|++|.            +.|+|+++++
T Consensus       104 ~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~  154 (157)
T 2fk9_A          104 AVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVIT  154 (157)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEE
T ss_pred             EEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEE
Confidence            999999 89999999999999999865    4567899873            2799999998

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.85  E-value=2.3e-20  Score=158.07  Aligned_cols=120  Identities=25%  Similarity=0.415  Sum_probs=105.0

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C---
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I---  337 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~---  337 (398)
                      ..|.|+|+|++|++|+.+|..|.+||||++++++ .+++|+++++|+||.|||+|.|.+..+ .+.|.++|||+| .   
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC-EEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCccc
Confidence            4799999999999999999999999999999987 688999999999999999999999875 478999999999 5   


Q ss_pred             --------CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          338 --------GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       338 --------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                              ++|++||++.++++++.  ...+.|++|.+.     ......+|+|+++++  |.
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~-----~~~~~~~G~i~l~l~--~e  146 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKR-----TDKSAVSGAIRLHIS--VE  146 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCS-----STTCCCCCEEEEEEE--EE
T ss_pred             cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccC-----CCCCCCceEEEEEEE--EE
Confidence                    79999999999999993  355789998642     233456899999999  75

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=1.1e-20  Score=157.89  Aligned_cols=117  Identities=19%  Similarity=0.256  Sum_probs=101.5

Q ss_pred             CCcEEEEEEeeeeecccCcCCCC-----------CCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEE
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGK-----------SDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIF  330 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v  330 (398)
                      ..|.|+|+|++|++|+++|..++           +||||++++++....+|+++++|+||.|||+|.|.+.+.  +.|.+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~   81 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL   81 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence            36999999999999999886544           999999999876667999999999999999999999764  78999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccc--cceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTP--KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      +|||+| .++|++||++.++++++..+..  .+.|++|.            +.|+|+++++  |.+.
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~i~l~l~--~~~~  134 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------PEGKVYVIID--LSGS  134 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEE--EEEE
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC------------CCeEEEEEEE--EEec
Confidence            999999 8999999999999999987532  36788663            2799999999  9764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.84  E-value=3.2e-20  Score=161.97  Aligned_cols=126  Identities=27%  Similarity=0.510  Sum_probs=101.0

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEc
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK  335 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~  335 (398)
                      ...|.|+|+|++|++|+.++..|.+||||++++.+.     .+++|+++++++||.|||+|.|.+.. ....|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEEC
Confidence            458999999999999999999999999999999741     46899999999999999999999986 457899999999


Q ss_pred             c-CCCCceeEEEEEECccccccccc-c-----eEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPK-E-----AELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      | .++|++||++.++|.++..+... +     .|+.|...     ...++..|+|+++++  |.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~l~--~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR-----SHKSRVKGYLRLKMT--YLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCS-----STTCCCCSEEEEEEE--ECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc-----CCCCccCEEEEEEEE--EEeC
Confidence            9 88999999999999999876543 2     68888652     234556899999999  9986

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=3.3e-20  Score=152.67  Aligned_cols=116  Identities=22%  Similarity=0.432  Sum_probs=100.9

Q ss_pred             CcEEEEEEeeeeecccC---cCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccC
Q 015915          263 QGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDI  337 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~---d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~  337 (398)
                      .|.|+|+|++|++|+.+   +..|.+||||++++++  ..+++|+++++++||.|||+|.|.+.......|.++|||+|.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   6679999999999985  367899999999999999999999976667899999999993


Q ss_pred             CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          338 GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      .+|++||++.++++++..+.....|++|.+          ...|.|++++.
T Consensus        82 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----------~~~g~i~~~le  122 (126)
T 1rlw_A           82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VTEMVLEMSLE  122 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETT----------TEEEEEEEEEE
T ss_pred             CCCceeEEEEEEHHHccCCCcEEEEEEcCC----------CceEEEEEEEE
Confidence            359999999999999998877889998742          34678888776

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.83  E-value=7.9e-20  Score=151.74  Aligned_cols=121  Identities=25%  Similarity=0.351  Sum_probs=100.2

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC-
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ-  339 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~-  339 (398)
                      ...|+|+|++|++|+.+|..|.+||||++++.+ ...++|+++++|+||.|||+|.|.+.+.  +.|.++|||+| .++ 
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence            467999999999999999999999999999975 4678999999999999999999999864  35999999999 665 


Q ss_pred             --CceeEEEEEECccccc-ccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          340 --DKRLGIVKLPLIDLEA-DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       340 --d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                        |++||++.++++++.. ......|++|...   ........+|+|+++++
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~---~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL---NPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCS---STTCCCCCCSEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeec---CCCCCCceeEEEEEEEE
Confidence              8999999999999843 3344577877542   11233456899999998

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=1.6e-19  Score=156.89  Aligned_cols=126  Identities=18%  Similarity=0.283  Sum_probs=103.8

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      ...+.|+|+|++|++|++.+..+.+||||++++++ .+++|+++++|+||.|||+|.|.+..  ...|.|+|||+| .++
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~  109 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS  109 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCC
Confidence            45789999999999999444445699999999998 78999999999999999999999853  679999999999 889


Q ss_pred             CceeEEEEEECcccccccc-----cceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915          340 DKRLGIVKLPLIDLEADTP-----KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL  396 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~  396 (398)
                      |++||++.+++.++..+..     ...|++|...     ..+....|+|.++++  |.++..
T Consensus       110 dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~--~l~~~~  164 (173)
T 2nq3_A          110 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLD--GLQLES  164 (173)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEE--SEECC-
T ss_pred             CceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEe--eeecch
Confidence            9999999999999875432     2568887642     124457899999999  998754

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=154.55  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=96.2

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc---e--eeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---L--FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      +..|....+.|+|+|++|++|+.+|..|.+||||++++.+   .  .++||+++++|+||+|||+|.|.+...  ....|
T Consensus        35 sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L  114 (155)
T 2z0u_A           35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTL  114 (155)
T ss_dssp             EEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEE
T ss_pred             EEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEE
Confidence            3345578899999999999999999999999999999975   2  378999999999999999999998642  24689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECccccc-ccccceEEecc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEA-DTPKEAELRLL  366 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~  366 (398)
                      .++|||+| .++|++||++.++++++.. +.....|++|.
T Consensus       115 ~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          115 RVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             EEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            99999999 8999999999999999964 55677899875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.78  E-value=7e-19  Score=148.04  Aligned_cols=112  Identities=28%  Similarity=0.392  Sum_probs=98.4

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~  331 (398)
                      +..|....+.|+|+|++|++|+.++..+.+||||++++.+  ..+++|+++++++||.|||+|.|.+...  ....|.|+
T Consensus        26 ~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~  105 (143)
T 3f04_A           26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMA  105 (143)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEE
Confidence            3345578999999999999999999889999999999943  3578999999999999999999988642  35789999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |||+| .++|++||++.++++++..+...+.|++|.+
T Consensus       106 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          106 VYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             EEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            99999 8899999999999999998888889998864

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=8.7e-19  Score=149.09  Aligned_cols=112  Identities=28%  Similarity=0.392  Sum_probs=98.3

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~  331 (398)
                      +..|.+..+.|+|+|++|++|+..+..+.+||||++++.+  ..+++|+++++++||.|||+|.|.+...  ....|.|+
T Consensus        34 ~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~  113 (152)
T 1rsy_A           34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMA  113 (152)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEE
Confidence            3345578899999999999999999899999999999953  3578999999999999999999988642  35789999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |||+| .++|++||++.+++.++..+...+.|++|.+
T Consensus       114 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          114 VYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             EEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            99999 8899999999999999988777889998864

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=1.1e-18  Score=145.24  Aligned_cols=107  Identities=20%  Similarity=0.306  Sum_probs=93.7

Q ss_pred             cCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEE-eecC--CCCeEEEEE
Q 015915          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI-AEDK--ETQSLIFEV  332 (398)
Q Consensus       260 ~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~L~v~v  332 (398)
                      ....|.|+|+|++|++|+. +..|.+||||++++.+    ..+++|+++++|+||.|||+|.|. +...  ....|.++|
T Consensus        16 ~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V   94 (134)
T 2b3r_A           16 SYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV   94 (134)
T ss_dssp             EEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred             eecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence            3468999999999999997 7789999999999842    357899999999999999999999 7532  457999999


Q ss_pred             EEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ||+| .++|++||++.++++++..+.....|++|.+
T Consensus        95 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           95 LSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             EECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            9999 8899999999999999988777889999864

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=7.8e-19  Score=147.42  Aligned_cols=111  Identities=28%  Similarity=0.414  Sum_probs=97.1

Q ss_pred             ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEE
Q 015915          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFE  331 (398)
Q Consensus       257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~  331 (398)
                      ..|.+..+.|+|+|++|++|+.++..|.+||||++++.+  ..+++|+++++++||.|||+|.|.+..   .....|.|+
T Consensus        19 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~   98 (141)
T 2d8k_A           19 VGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQ   98 (141)
T ss_dssp             EEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEE
T ss_pred             EEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEE
Confidence            335567899999999999999999899999999999953  357899999999999999999998522   235789999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |||+| .++|++||++.+++.++..+...+.|++|.+
T Consensus        99 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A           99 VLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             EEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             EEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            99999 8899999999999999998877889999864

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=1.1e-18  Score=144.03  Aligned_cols=109  Identities=24%  Similarity=0.277  Sum_probs=90.1

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEc----ceeeEeccccCCCCCceeccEEEEEee---cCCCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK----PLFKVKTNVVDNNLNPVWNQTFELIAE---DKETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~kT~~~~~t~nP~Wne~f~~~v~---~~~~~~L  328 (398)
                      +..|.+..+.|+|+|++|++|+.++..|.+||||++++.    ...+++|+++++|+||.|||+|.|.+.   +.....|
T Consensus        10 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l   89 (129)
T 2bwq_A           10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERML   89 (129)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEE
T ss_pred             EEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeE
Confidence            334556789999999999999999999999999999993    236789999999999999999999852   2235789


Q ss_pred             EEEEEEcc-CCC--CceeEEEEEECcccccccccceEEec
Q 015915          329 IFEVFDKD-IGQ--DKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      .++|||+| .++  |++||++.++++++.... .+.|++|
T Consensus        90 ~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           90 EITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             EEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            99999999 776  999999999999987754 6789876

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.77  E-value=1.1e-18  Score=146.64  Aligned_cols=112  Identities=30%  Similarity=0.517  Sum_probs=97.0

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEE-eecC--CCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI-AEDK--ETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~L  328 (398)
                      +..|.++.+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++++||.|||+|.|. +...  ....|
T Consensus        21 ~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l  100 (142)
T 2chd_A           21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTL  100 (142)
T ss_dssp             EEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEE
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEE
Confidence            3345568899999999999999999899999999999975    357899999999999999999998 5432  23689


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .|+|||+| .++|++||++.++++++..+.....|+.|.+
T Consensus       101 ~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          101 RISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             EEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99999999 8899999999999999998888888888753

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=3.6e-18  Score=142.89  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=93.6

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc---eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v  330 (398)
                      +..|....+.|+|+|++|+   ++|..|.+||||++++.+   ..+++|+++++|+||.|||+|.|.+...  ....|.+
T Consensus        18 sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~   94 (138)
T 1wfm_A           18 CLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTL   94 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEE
T ss_pred             EEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEE
Confidence            3345567899999999999   467789999999999953   3468999999999999999999998653  2468999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      +|||+| .++|++||++.++|.++..+.....|++|.+
T Consensus        95 ~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           95 TLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             EEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             EEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999999 8999999999999999987677789999865

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=147.36  Aligned_cols=113  Identities=19%  Similarity=0.311  Sum_probs=98.3

Q ss_pred             cccccCCCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      +..|.+..|.|+|+|++|++|+.++ ..|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+...  ....|
T Consensus        15 sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L   94 (148)
T 3fdw_A           15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTL   94 (148)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEE
T ss_pred             EEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEE
Confidence            3345677999999999999999988 579999999999974    2478999999999999999999998654  24579


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      .++|||+| .++|++||++.++++++..+.....|++|.+.
T Consensus        95 ~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           95 QFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             EEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            99999999 88999999999999999887778899999763

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=5.2e-18  Score=159.13  Aligned_cols=133  Identities=25%  Similarity=0.349  Sum_probs=112.7

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~  331 (398)
                      +..|....|.|+|+|++|++|+.+|..|.+||||++++.+  ...++|+++++|+||.|||+|.|.+...  ....|.++
T Consensus        11 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~   90 (284)
T 2r83_A           11 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMA   90 (284)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEE
T ss_pred             EEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEE
Confidence            3345568999999999999999999999999999999974  2478999999999999999999998643  35799999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      |||+| .++|++||++.+++.++..+...+.|++|.+..    .......|+|.+++.  |.|.
T Consensus        91 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~~~~~~~G~i~l~l~--~~p~  148 (284)
T 2r83_A           91 VYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE----KEEQEKLGDICFSLR--YVPT  148 (284)
T ss_dssp             EEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS----SCCCCCCCEEEEEEE--EETT
T ss_pred             EEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccc----cccccccccEEEEEE--ecCc
Confidence            99999 889999999999999998877778999986531    122346799999999  9874

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=9.5e-19  Score=146.70  Aligned_cols=109  Identities=25%  Similarity=0.304  Sum_probs=93.6

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEe-ec--CCCCeEEE
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA-ED--KETQSLIF  330 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v-~~--~~~~~L~v  330 (398)
                      .|.+..+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+ ..  .....|.|
T Consensus        15 ~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i   94 (141)
T 1v27_A           15 WFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI   94 (141)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEE
T ss_pred             EEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEE
Confidence            35567899999999999999999999999999999832    3578999999999999999999984 32  23578999


Q ss_pred             EEEEcc-CCC--CceeEEEEEECcccccccccceEEeccc
Q 015915          331 EVFDKD-IGQ--DKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       331 ~v~d~d-~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      +|||+| .++  |++||++.+++.++.... ...|++|.+
T Consensus        95 ~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~  133 (141)
T 1v27_A           95 TLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT  133 (141)
T ss_dssp             EEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred             EEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence            999999 766  999999999999987654 678999875

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=4.4e-18  Score=144.23  Aligned_cols=105  Identities=28%  Similarity=0.480  Sum_probs=93.2

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD  336 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d  336 (398)
                      ..+.|+|+|++|++|+.++..+.+||||++++.+    ..+++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            4689999999999999999899999999999974    3578999999999999999999998753 2358999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                       .++|++||++.+++.++..+ ..+.|++|.+
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence             88999999999999999875 4678999865

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=7e-18  Score=141.02  Aligned_cols=110  Identities=27%  Similarity=0.391  Sum_probs=93.6

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEE-eecC--CCCeEEEE
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AEDK--ETQSLIFE  331 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~L~v~  331 (398)
                      .|.++.+.|+|+|++|++|+.+|.. |.+||||++++.+  ..+++|+++++|+||.|||+|.|. +...  ....|.++
T Consensus        16 ~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~   95 (138)
T 1ugk_A           16 EYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFT   95 (138)
T ss_dssp             EEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEE
T ss_pred             EEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEE
Confidence            3556789999999999999999985 8999999999964  367899999999999999999996 5432  34689999


Q ss_pred             EEEcc-CCCCceeEEEEEECccccccccc-ceEEeccc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPK-EAELRLLP  367 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~-~~~~~L~~  367 (398)
                      |||+| .++|++||++.++++++..+... ..|++|.+
T Consensus        96 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           96 ILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             EEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            99999 88999999999999999876554 46677754

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.9e-18  Score=144.00  Aligned_cols=109  Identities=25%  Similarity=0.278  Sum_probs=93.4

Q ss_pred             cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (398)
Q Consensus       258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~  331 (398)
                      .|.+..+.|+|+|++|++|+.++..| +||||++++.+    ..+++|+++++|+||.|||+|.|.+...  ....|.|+
T Consensus        18 ~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~   96 (142)
T 2dmg_A           18 RHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVA   96 (142)
T ss_dssp             EEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEE
T ss_pred             EEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEE
Confidence            34567899999999999999999888 99999999953    2568999999999999999999998532  23589999


Q ss_pred             EEEcc-CCC--CceeEEEEEECcccccccccceEEeccc
Q 015915          332 VFDKD-IGQ--DKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       332 v~d~d-~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |||+| .++  |++||++.++++++..+.....|++|.+
T Consensus        97 V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           97 VKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             EEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             EEECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            99999 653  5799999999999987777788999865

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=1.3e-18  Score=146.14  Aligned_cols=105  Identities=29%  Similarity=0.357  Sum_probs=93.0

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-------------eeEeccccCCCCCceeccEEEEE-eec--CCCC
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-------------FKVKTNVVDNNLNPVWNQTFELI-AED--KETQ  326 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-------------~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~  326 (398)
                      .|.|+|+|++|++|+.+|..|.+||||++++.+.             .+++|+++++|+||.|||+|.|. +..  ....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            7899999999999999999999999999999763             25789999999999999999997 532  2457


Q ss_pred             eEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          327 SLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       327 ~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .|.++|||+| .++|++||++.++++++..+.....|++|.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            8999999999 8899999999999999988777789999864

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=2.4e-18  Score=146.52  Aligned_cols=112  Identities=19%  Similarity=0.296  Sum_probs=95.3

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEee--cCCCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAE--DKETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~--~~~~~~L  328 (398)
                      ++..|....|.|+|+|++|++|+..+ .|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+.  +. ...|
T Consensus        18 lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L   95 (153)
T 3fbk_A           18 LRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDD-QKRL   95 (153)
T ss_dssp             EEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGT-TSEE
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHh-CCEE
Confidence            34456678999999999999999998 69999999999953    24689999999999999999999983  33 3569


Q ss_pred             EEEEEEcc-CCC-CceeEEEEEECccccc-ccccceEEecccc
Q 015915          329 IFEVFDKD-IGQ-DKRLGIVKLPLIDLEA-DTPKEAELRLLPS  368 (398)
Q Consensus       329 ~v~v~d~d-~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~  368 (398)
                      .|+|||+| .++ |++||++.++++++.. +.....|++|.+.
T Consensus        96 ~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A           96 LVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             EEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             EEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            99999999 666 9999999999999985 6677899999763

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.74  E-value=5.8e-18  Score=146.91  Aligned_cols=106  Identities=20%  Similarity=0.345  Sum_probs=93.9

Q ss_pred             CCcEEEEEEeeeeecccCcC-CCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEE-Ec
Q 015915          262 PQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVF-DK  335 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~-d~  335 (398)
                      ..|.|+|+|++|++|+.+|. .|.+||||++++.+.    .+++|+++++|+||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            58999999999999999985 699999999998752    37899999999999999999999865 4678999999 99


Q ss_pred             c-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915          336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS  368 (398)
Q Consensus       336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~  368 (398)
                      | .++|++||++.++++++..+.....|++|.+.
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            9 88999999999999999877788899999764

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3.4e-18  Score=144.50  Aligned_cols=112  Identities=20%  Similarity=0.306  Sum_probs=94.2

Q ss_pred             cccccCCCcEEEEEEeeeeecccC-cC------CCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--C
Q 015915          256 SELELKPQGKVAVTIVKANNLKNM-EM------IGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--E  324 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~-d~------~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~  324 (398)
                      +..|.+..+.|+|+|++|++|+.+ +.      .|.+||||++++.+  ..+++|+++++++||.|||+|.|.+...  .
T Consensus        18 ~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~   97 (147)
T 2enp_A           18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQ   97 (147)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHH
T ss_pred             EEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhc
Confidence            344567899999999999999984 33      36899999999974  3578999999999999999999988642  2


Q ss_pred             CCeEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          325 TQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       325 ~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ...|.|+|||+| .++|++||++.+++.++........|+.|.+
T Consensus        98 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A           98 RRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             HSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             cCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            358999999999 8899999999999999987766678888754

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.74  E-value=1.4e-17  Score=138.89  Aligned_cols=108  Identities=28%  Similarity=0.402  Sum_probs=91.1

Q ss_pred             ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCC--CCeEEE
Q 015915          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIF  330 (398)
Q Consensus       257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v  330 (398)
                      ..|.+..|.|+|+|++|++|+..+..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+....  ...|.+
T Consensus         9 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~   88 (138)
T 3n5a_A            9 LCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIII   88 (138)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEE
T ss_pred             EEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEE
Confidence            345567899999999999999999999999999999974    24789999999999999999999986532  358999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      +|||+| .++|++||++.++++++..  ....|+++.
T Consensus        89 ~V~d~~~~~~~~~lG~~~i~l~~~~~--~~~~W~~l~  123 (138)
T 3n5a_A           89 TVMDKDKLSRNDVIGKIYLSWKSGPG--EVKHWKDMI  123 (138)
T ss_dssp             EEEECCSSSCCEEEEEEEESSSSCHH--HHHHHHHHH
T ss_pred             EEEECCCCCCCcEEEEEEEccccCCh--HHHHHHHHH
Confidence            999999 8899999999999997542  345566654

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.74  E-value=2.1e-17  Score=141.59  Aligned_cols=112  Identities=31%  Similarity=0.449  Sum_probs=93.4

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~  329 (398)
                      +..|.+..|.|+|+|++|++|+.+|..|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+...  ....|.
T Consensus        17 ~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~   96 (159)
T 1tjx_A           17 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVV   96 (159)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEE
Confidence            3345578999999999999999999999999999999964    2468999999999999999999998643  245799


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccc------------cccccceEEeccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLE------------ADTPKEAELRLLP  367 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~------------~~~~~~~~~~L~~  367 (398)
                      |+|||+| .++|++||++.+++..+.            .+.....|+.|.+
T Consensus        97 i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A           97 VTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             EEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             EEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            9999999 889999999999998642            2234567888765

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.72  E-value=5.5e-17  Score=140.01  Aligned_cols=107  Identities=25%  Similarity=0.321  Sum_probs=90.4

Q ss_pred             ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEE
Q 015915          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (398)
Q Consensus       257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v  330 (398)
                      ..|.++.+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+...  ....|.|
T Consensus        30 l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i  109 (166)
T 2cm5_A           30 LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDI  109 (166)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEE
T ss_pred             EEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEE
Confidence            335567999999999999999999999999999999975    3578999999999999999999998643  2468999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      +|||+| .++|++||++.+++.++..  ....|+++
T Consensus       110 ~V~d~d~~~~~~~iG~~~i~l~~~~~--~~~~W~~l  143 (166)
T 2cm5_A          110 SVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYEC  143 (166)
T ss_dssp             EEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHH
T ss_pred             EEEECCCCCCCcEEEeEEEecccCCc--hhHHHHHH
Confidence            999999 8899999999999998632  23345444

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.72  E-value=3.7e-17  Score=154.37  Aligned_cols=133  Identities=26%  Similarity=0.341  Sum_probs=107.5

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEc--ceeeEeccccCCCCCceeccEEEEEeecCC--CCeEEE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIF  330 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v  330 (398)
                      ++..|....+.|+|+|++|++|+.+|..|.+||||++++.  +..+++|+++++|+||.|||+|.|.+...+  ...|+|
T Consensus        11 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~   90 (296)
T 1dqv_A           11 FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHF   90 (296)
T ss_dssp             EEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEE
Confidence            3444567889999999999999999999999999999994  236789999999999999999999986432  458999


Q ss_pred             EEEEcc-CCCCceeEEEEEE-Cccccc-ccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          331 EVFDKD-IGQDKRLGIVKLP-LIDLEA-DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      +|||+| .++|++||++.++ +.++.. ......|++|...     .......|+|.++++  |.|.
T Consensus        91 ~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~i~vsl~--y~~~  150 (296)
T 1dqv_A           91 SVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG-----GSEKADLGELNFSLC--YLPT  150 (296)
T ss_dssp             EEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC-----SSCCSCCCEEEEEEE--EETT
T ss_pred             EEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccc-----cccccccceEEEEEE--eccc
Confidence            999999 8999999999996 555543 3345678887642     133456799999999  9874

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.71  E-value=1.8e-17  Score=140.97  Aligned_cols=109  Identities=22%  Similarity=0.236  Sum_probs=85.9

Q ss_pred             ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--e--eeEeccccCCCCCceeccEEEEEeecCC--CCeEEE
Q 015915          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--L--FKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIF  330 (398)
Q Consensus       257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v  330 (398)
                      ..|.+..+.|+|+|++|++|+.++..|.+||||++++.+  .  .+++|+++++|+||.|||+|.|.+....  ...|.|
T Consensus        23 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v  102 (153)
T 1w15_A           23 LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEF  102 (153)
T ss_dssp             EEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEE
T ss_pred             EEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEE
Confidence            345567899999999999999999889999999999953  2  2679999999999999999999987542  367999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      +|||+| .++|++||++.+++++  .+.....|++|..
T Consensus       103 ~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A          103 LVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             EEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence            999999 8899999999999988  3334556776643

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.70  E-value=6.4e-17  Score=133.97  Aligned_cols=89  Identities=22%  Similarity=0.317  Sum_probs=74.4

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCCCCeEEEEEEEccCCCC
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQD  340 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d  340 (398)
                      ..+.|+|+|++|+++..   .|.+||||+++ .  +..+|++++ +|+||.|||+|.|.+.+. ...|.++|||+|.++|
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d~~~d   75 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V--QNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWD   75 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E--TTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e--cCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECCCCCC
Confidence            46899999999998853   57899999999 3  234555554 699999999999999864 5589999999997789


Q ss_pred             ceeEEEEEECccccccc
Q 015915          341 KRLGIVKLPLIDLEADT  357 (398)
Q Consensus       341 ~~lG~~~i~l~~l~~~~  357 (398)
                      ++||++.++++++....
T Consensus        76 d~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           76 TMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             EEEEEEEEEGGGSCBCS
T ss_pred             CeEEEEEEEHHHhhhcC
Confidence            99999999999987543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.69  E-value=1.1e-15  Score=154.34  Aligned_cols=173  Identities=21%  Similarity=0.273  Sum_probs=126.5

Q ss_pred             EeecCCcceEEEEEeecCcCccccccHHHHHHHHHHHHHhhhcCC-----C--CeeeeecCCCC---------cCccc-c
Q 015915          196 ALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW-----P--HRIVVPIGGIP---------VDTSE-L  258 (398)
Q Consensus       196 sf~~~P~p~id~~~~~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~-----P--~~~~ipl~~~~---------~d~~~-~  258 (398)
                      |+..-|. -|++++.++..-+..-+--..-++..+.+++.+.-.+     |  |-. .++.+..         .-... .
T Consensus       310 Sv~~~P~-~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~l~g~~C~C~C~~~~~t~~~~C  387 (540)
T 3nsj_A          310 SLPSNPG-LVDYSLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HKSSHDSCQCECQDSKVTNQDCC  387 (540)
T ss_dssp             HTTTSCE-EEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EECSSCTTCEEESCTTTBCGGGC
T ss_pred             HHhhCCc-eEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-ccCCCCceEeeCCCCCCcccccc
Confidence            3334453 5899999886434333556677888888888877665     3  111 2232210         00111 1


Q ss_pred             cc-CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEee-cCCCCeEEEEEEEcc
Q 015915          259 EL-KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-DKETQSLIFEVFDKD  336 (398)
Q Consensus       259 ~~-~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~-~~~~~~L~v~v~d~d  336 (398)
                      .. ...|.|+|+|++|++|+. |..|++||||++++++ .++||+++++|+||+|||+|.|.+. ....+.|+|+|||+|
T Consensus       388 ~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~-~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D  465 (540)
T 3nsj_A          388 PRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG-QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD  465 (540)
T ss_dssp             BSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT-EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC
T ss_pred             cccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC-EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC
Confidence            11 347899999999999998 9999999999999997 5699999999999999999999864 345778999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEee
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGA  389 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~  389 (398)
                       .++||+||++.++|..    +..+.|+.+             +.|.|++++.+
T Consensus       466 ~~~~dD~LG~~~~~L~~----g~~~~~~~l-------------~~G~l~~~~~~  502 (540)
T 3nsj_A          466 YGWDDDLLGSCDRSPHS----GFHEVTCEL-------------NHGRVKFSYHA  502 (540)
T ss_dssp             SSSCCEEEEEEEECCCS----EEEEEEEEC-------------SSSEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEeeC----CcEEEEEEc-------------CCeEEEEEEEE
Confidence             8899999999999883    234566653             25888888775

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.69  E-value=2.1e-16  Score=129.78  Aligned_cols=118  Identities=15%  Similarity=0.254  Sum_probs=100.1

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecC--CCCeEEEEEEEcc-CCC
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~~~  339 (398)
                      =-|+|+|.+|.+|+     |++|||+++.+++ .+++|++++ ++.||.|||.|++++..+  .+..|.+.|||++ +++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg-~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~   94 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRG-QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS   94 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETT-EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSC
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEec-cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccC
Confidence            36899999999998     6899999999987 789999998 799999999999999543  4678999999999 999


Q ss_pred             CceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          340 DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      +++||++.++|.++..++....+..|...      .+....++|.++++  |.|.+
T Consensus        95 nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------n~~~~~a~I~l~l~--Y~pp~  142 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEENRVEVSDTLIDD------NNAIIKTSLSMEVR--YQAAD  142 (144)
T ss_dssp             CEEEEEEEEESHHHHHHSEEEEEEEEECT------TSCEEEEEEEEEEE--EEETT
T ss_pred             CCEEEEEEEEhHHhccCCeEEEeecccCC------CCCccccEEEEEEE--ecCCC
Confidence            99999999999999988766666666542      33334589999999  99954

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.69  E-value=1.8e-16  Score=160.83  Aligned_cols=117  Identities=25%  Similarity=0.473  Sum_probs=102.3

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      ...|.|+|+|++|++|+.+|..|.+||||++++++ .+++|+++++|+||.|||+|.|.+.+.....|+++|||+| .++
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence            46789999999999999999999999999999987 6899999999999999999999998777788999999999 899


Q ss_pred             CceeEEEEEECcccccccc----cceEEecccccccccccCCCcccEEEEEEe
Q 015915          340 DKRLGIVKLPLIDLEADTP----KEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                      |++||++.++++++..+..    ...|+.+.          +...|+|++++.
T Consensus       463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~  505 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFD  505 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEE
T ss_pred             CCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEE
Confidence            9999999999999987544    45677653          235799998888

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.64  E-value=1.3e-15  Score=131.19  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCCCCeEEEEEEEccCCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~  339 (398)
                      ...+.|+|+|++|+++.   ..|.+||||+++ .  +..+|++++ ++.||.|||+|.|.+.+. ...|.++|||+|.++
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d~~~   83 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V--QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIW   83 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E--TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECCSSC
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e--cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECCCCC
Confidence            34789999999999884   257899999999 3  345666665 699999999999999864 558999999999778


Q ss_pred             CceeEEEEEECccccccc
Q 015915          340 DKRLGIVKLPLIDLEADT  357 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~  357 (398)
                      |++||++.++|+++....
T Consensus        84 dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           84 DTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             CEEEEEEEEEGGGSCBCS
T ss_pred             CceEEEEEEEHHHhcccC
Confidence            999999999999986543

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.61  E-value=4.3e-16  Score=162.05  Aligned_cols=108  Identities=25%  Similarity=0.480  Sum_probs=97.8

Q ss_pred             ccCCCcEEEEEEeeeeeccc---CcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEE
Q 015915          259 ELKPQGKVAVTIVKANNLKN---MEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVF  333 (398)
Q Consensus       259 ~~~~~g~L~V~V~~a~~L~~---~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~  333 (398)
                      ...+.|.|+|+|++|++|+.   +|..|++||||++++.+  ..++||+++++|+||+|||+|.|.+.....+.|+++||
T Consensus        13 e~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~   92 (749)
T 1cjy_A           13 EHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLM   92 (749)
T ss_dssp             CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEE
T ss_pred             cCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEE
Confidence            34678999999999999998   88889999999999984  35789999999999999999999998766789999999


Q ss_pred             Ecc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      |+| .+ |++||++.+++.++..+.....|++|.+
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            999 77 9999999999999988877889999865

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.56  E-value=2.4e-14  Score=134.11  Aligned_cols=109  Identities=32%  Similarity=0.476  Sum_probs=90.9

Q ss_pred             ccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCC--CCeEEEEE
Q 015915          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEV  332 (398)
Q Consensus       259 ~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v~v  332 (398)
                      +.+..+.|+|+|++|++|+.+|..|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+....  ...|.|+|
T Consensus       145 ~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V  224 (284)
T 2r83_A          145 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV  224 (284)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEE
T ss_pred             ecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEE
Confidence            3467899999999999999999999999999999853    14679999999999999999999986542  34799999


Q ss_pred             EEcc-CCCCceeEEEEEECccccc------------ccccceEEeccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLEA------------DTPKEAELRLLP  367 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~~------------~~~~~~~~~L~~  367 (398)
                      ||+| .++|++||++.++++.+..            +.....|+.|.+
T Consensus       225 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          225 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             EeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999 8999999999999987422            233457888765

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.56  E-value=3.1e-14  Score=146.73  Aligned_cols=120  Identities=23%  Similarity=0.358  Sum_probs=99.7

Q ss_pred             CCcEEEEEEeeeeecccCcC--CCCCCcEEEEEEcc----eeeEeccccCCC-CCceeccEEEEEeecCCCCeEEEEEEE
Q 015915          262 PQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKP----LFKVKTNVVDNN-LNPVWNQTFELIAEDKETQSLIFEVFD  334 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~----~~~~kT~~~~~t-~nP~Wne~f~~~v~~~~~~~L~v~v~d  334 (398)
                      ..+.|+|+|++|++|+..+.  .|.+||||++++.+    ..++||++++++ +||.|||+|.|.+..++...|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999998874  68999999999954    257899999987 999999999999987666789999999


Q ss_pred             cc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCC-cccEEEEEEeeeee
Q 015915          335 KD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKK-DRGSITVKVGASKH  392 (398)
Q Consensus       335 ~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~-~~G~I~l~l~~~y~  392 (398)
                      +| .++|++||++.+++.++..+.   .|++|...      .+.. ..|+|.+.++  |.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L~v~i~--~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATLFVKIS--IQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEEEEEEE--EE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEEEEEEE--EE
Confidence            99 889999999999999997653   47777531      2122 3588888888  64

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.48  E-value=2.4e-15  Score=151.13  Aligned_cols=127  Identities=14%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCC---CCceeccEEEEEeecCCCCeEEEEEEEc-c
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNN---LNPVWNQTFELIAEDKETQSLIFEVFDK-D  336 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t---~nP~Wne~f~~~v~~~~~~~L~v~v~d~-d  336 (398)
                      +..|.|+|+|++|++|+++|     ||||++++++....||+++++|   +||.|||+|.|.+... ...|.++|||+ |
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d   81 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSD   81 (483)
T ss_dssp             EEEECC--------------------------------------------------CCEECC------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCC
Confidence            45789999999999999876     9999999987557799999999   9999999999987543 57899999994 3


Q ss_pred             ----CCCCceeEEEEEECcccccccccceEEecccccccc-----------------cccCCCcccEEEEEEeeeeeecc
Q 015915          337 ----IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDML-----------------KIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       337 ----~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-----------------~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                          .++|++||++.++++++..+...+.|++|.......                 ..++....|.|++++.  |.+..
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~--~~~~~  159 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKAR--YQTMS  159 (483)
T ss_dssp             -------------------------CCEECC--------------------------------------CEEE--EEECC
T ss_pred             ccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEE--eeeee
Confidence                578999999999999999877788999985432100                 0012234699999999  97754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.47  E-value=1.6e-14  Score=136.26  Aligned_cols=96  Identities=33%  Similarity=0.520  Sum_probs=84.3

Q ss_pred             ccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCC--CCeEEEEE
Q 015915          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEV  332 (398)
Q Consensus       259 ~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v~v  332 (398)
                      +.+..|.|+|+|++|++|+.+|..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+....  ...|.|+|
T Consensus       147 y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V  226 (296)
T 1dqv_A          147 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV  226 (296)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             eccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEE
Confidence            4467899999999999999999999999999999862    24689999999999999999999886532  45799999


Q ss_pred             EEcc-CCCCceeEEEEEECcccc
Q 015915          333 FDKD-IGQDKRLGIVKLPLIDLE  354 (398)
Q Consensus       333 ~d~d-~~~d~~lG~~~i~l~~l~  354 (398)
                      ||+| .++|++||.+.++++++.
T Consensus       227 ~d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          227 VDYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTC
T ss_pred             EeCCCCCCCceEEEEEECCccCC
Confidence            9999 899999999999998864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.30  E-value=4e-12  Score=133.04  Aligned_cols=105  Identities=28%  Similarity=0.490  Sum_probs=91.4

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD  336 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d  336 (398)
                      ..+.|+|+|.+|++|..+|..|.+||||++++.+    ..+++|+++++|+||.|||+|.|.+... ....|.++|||+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            4789999999999999999999999999999943    2468999999999999999999998643 3456999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                       .++|++||.+.++++++.... .+.|+.+..
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls  280 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS  280 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred             cccccccccccccchhhhccCC-cccceeecc
Confidence             999999999999999997654 477888764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.19  E-value=9.7e-11  Score=123.86  Aligned_cols=110  Identities=18%  Similarity=0.267  Sum_probs=87.2

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-----eeeEeccccCC-CCCceecc-EEEEE-eecCCCCeEEEEEEEc
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDN-NLNPVWNQ-TFELI-AEDKETQSLIFEVFDK  335 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~kT~~~~~-t~nP~Wne-~f~~~-v~~~~~~~L~v~v~d~  335 (398)
                      ..|+|+|++|++|+..    .+||||++.+.+     ..+++|+++++ ++||+||| +|.|. +..++...|+|+|||+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            4799999999999853    689999999964     13579999876 59999999 69998 7666667899999998


Q ss_pred             cCCCCceeEEEEEECcccccccccceEEecccccccccccCCC--cccEEEEEEeeeee
Q 015915          336 DIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKK--DRGSITVKVGASKH  392 (398)
Q Consensus       336 d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~--~~G~I~l~l~~~y~  392 (398)
                      |   |+++|++.++|+.+..+-   ..++|..       ..+.  ..|+|.+.+.  |.
T Consensus       801 d---ddfiG~~~lpL~~L~~Gy---R~vpL~~-------~~g~~l~~atLfv~i~--~~  844 (885)
T 3ohm_B          801 G---GKFVGHRILPVSAIRSGY---HYVCLRN-------EANQPLCLPALLIYTE--AS  844 (885)
T ss_dssp             T---TEEEEEEEEETTTCCCEE---EEEEEEC-------TTSCEEEEEEEEEEEE--EE
T ss_pred             C---ccEEeeEEEEHHHcCCCc---eEEEecC-------CCCCccCceEEEEEEE--EE
Confidence            7   899999999999998652   2455543       2222  4689999999  55

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.16  E-value=1.9e-10  Score=120.99  Aligned_cols=112  Identities=19%  Similarity=0.298  Sum_probs=86.8

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce------eeEeccccCC-CCCceeccE-EEEE-eecCCCCeEEEEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDN-NLNPVWNQT-FELI-AEDKETQSLIFEVF  333 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~kT~~~~~-t~nP~Wne~-f~~~-v~~~~~~~L~v~v~  333 (398)
                      .+.|+|+|++|++|+.+    .+||||++.+.+.      .++||+++++ ++||.|||+ |.|. +..++...|+++||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999753    6899999998641      4679999875 699999998 9998 76666678999999


Q ss_pred             EccCCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEee
Q 015915          334 DKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGA  389 (398)
Q Consensus       334 d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~  389 (398)
                      |++   |+++|++.++|+.+..+-   ..++|...     ....-..++|.+.+.+
T Consensus       725 D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~-----~g~~~~~atLfv~i~~  769 (816)
T 3qr0_A          725 EEN---GKFIGHRVMPLDGIKPGY---RHVPLRNE-----SNRPLGLASVFAHIVA  769 (816)
T ss_dssp             ETT---SCEEEEEEEESTTCCCEE---EEEEEECT-----TSCEEEEEEEEEEEEE
T ss_pred             ecC---CCeeeEEEEEHHHcCCcc---eEEEEeCC-----CCCCCCceEEEEEEEE
Confidence            985   899999999999998753   24555431     1111234788888883

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.15  E-value=1.9e-10  Score=121.42  Aligned_cols=111  Identities=20%  Similarity=0.288  Sum_probs=86.4

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-----eeeEecc-ccC-CCCCceecc-EEEE-EeecCCCCeEEEEE
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTN-VVD-NNLNPVWNQ-TFEL-IAEDKETQSLIFEV  332 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~kT~-~~~-~t~nP~Wne-~f~~-~v~~~~~~~L~v~v  332 (398)
                      ..|.|+|+|++|++|+.    +.+||||++.+.+     ..++||+ +++ +++||+||| +|.| .+..++...|++.|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            36789999999999985    4689999999943     1357999 776 469999999 6999 88766667899999


Q ss_pred             EEccCCCCceeEEEEEECcccccccccceEEecccccccccccCC-CcccEEEEEEe
Q 015915          333 FDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDK-KDRGSITVKVG  388 (398)
Q Consensus       333 ~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~-~~~G~I~l~l~  388 (398)
                      ||+|   ++++|++.++++++..+-   .+++|...      .+. -..++|.+.+.
T Consensus       752 ~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~------~g~~~~~~~Lfv~i~  796 (799)
T 2zkm_X          752 MEEG---NKFLGHRIIPINALNSGY---HHLCLHSE------SNMPLTMPALFIFLE  796 (799)
T ss_dssp             EETT---TEEEEEEEEEGGGBCCEE---EEEEEECT------TCCEEEEEEEEEEEE
T ss_pred             EEeC---CCccceEeeehhhcCCCc---EEEeccCC------CCCCCCceEEEEEEE
Confidence            9986   899999999999997652   35666431      112 23578888777

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.07  E-value=3.2e-09  Score=84.53  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=83.9

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEccee---eEec-cccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCC
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF---KVKT-NVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIG  338 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~kT-~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~  338 (398)
                      .+.|+|...++.--.-+......||||.+.++...   +.+| ..+++|.+|.|||+|.-.+.+  ...|.+.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence            56788888666532211222468999999997532   2355 778889999999999998885  5799999996545 


Q ss_pred             CCceeEEEEEECcccccc-----cccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          339 QDKRLGIVKLPLIDLEAD-----TPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       339 ~d~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                        ++++.|+++++++...     +..+.|+.|.            +.|+|++.+.  |+
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe------------P~Gkl~~~i~--~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ------------PQAKVLMSVQ--YF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB------------SSCEEEEEEE--EE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEecc------------cCcEEEEEEE--Ee
Confidence              9999999999999843     3457898874            4799999999  76

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.95  E-value=5.1e-09  Score=84.46  Aligned_cols=112  Identities=14%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             CCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEccee---eEec-cccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc
Q 015915          262 PQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPLF---KVKT-NVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD  336 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~~---~~kT-~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d  336 (398)
                      ..+.|+|...++.--+-+. .....||||.+.++...   ..+| ..++.|.+|+|||+|.-.+.+  ...|.+.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            3567888887766433221 12358999999997532   3677 677889999999999988875  579999999543


Q ss_pred             CCCCceeEEEEEECcccccc-----cccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          337 IGQDKRLGIVKLPLIDLEAD-----TPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       337 ~~~d~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      .   +|+..|++++++|...     +..+.|+.|.            +.|+|++.+.  |+
T Consensus        86 ~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe------------P~Gkl~v~i~--~~  129 (138)
T 2enj_A           86 V---DLISETTVELYSLAERCRKNNGKTEIWLELK------------PQGRMLMNAR--YF  129 (138)
T ss_dssp             C---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB------------SSCEEEEEEE--EC
T ss_pred             C---CeeeEEEEEHHHHHhhhccCCCceEEEEecc------------cCcEEEEEEE--EE
Confidence            4   8999999999999843     3457898874            3799999998  74

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=92.03  E-value=1.5  Score=36.16  Aligned_cols=121  Identities=14%  Similarity=0.204  Sum_probs=80.9

Q ss_pred             CCCcEEEEEEeeeeecccC-cCCCCCCcEEEEEEc--ceeeEeccccCCCCCceeccEEEEEeecC-------CCCeEEE
Q 015915          261 KPQGKVAVTIVKANNLKNM-EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELIAEDK-------ETQSLIF  330 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~-d~~g~~dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-------~~~~L~v  330 (398)
                      +..+.+.++|.++.--+.. ...+..+|+.-+.+.  .-+.+.|.+.. +.+|.+|.+-.+.+.-.       .+..+.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            5678999999988732211 112445777666664  33456777665 88999998887777321       2347889


Q ss_pred             EEEEccCCCCceeEEEEEECccccccccc-ceEEecccccccccccCC-CcccEEEEEEe
Q 015915          331 EVFDKDIGQDKRLGIVKLPLIDLEADTPK-EAELRLLPSLDMLKIKDK-KDRGSITVKVG  388 (398)
Q Consensus       331 ~v~d~d~~~d~~lG~~~i~l~~l~~~~~~-~~~~~L~~~~~~~~~~~~-~~~G~I~l~l~  388 (398)
                      +++.........+|++.+++.++.....+ .....|..      ..++ ..-|+|.+.++
T Consensus        94 ELhqa~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g------~~g~~~~~G~LeywiR  147 (156)
T 2yrb_A           94 EVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIG------TKGDIPNFGTVEYWFR  147 (156)
T ss_dssp             EEEEECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECB------SSSCCTTSEEEEEEEE
T ss_pred             EEEEeeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEc------CCCCcceEEEEEEEEE
Confidence            99887655567999999999999866543 23444432      1222 46799998888

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=86.28  E-value=16  Score=31.77  Aligned_cols=56  Identities=14%  Similarity=0.217  Sum_probs=42.3

Q ss_pred             eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc--CCC---CceeEEEEEECcc
Q 015915          297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD--IGQ---DKRLGIVKLPLID  352 (398)
Q Consensus       297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d--~~~---d~~lG~~~i~l~~  352 (398)
                      ..++|.+...+.+|.|+|++.+.+...  ...-|.|+++...  .++   +...|.+.+||-+
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            457888889999999999999888643  3446788888755  222   2478999999864

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=85.91  E-value=0.79  Score=28.18  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=17.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhh
Q 015915            2 GLISGVFMGMIFGIALMAGWRHMMR   26 (398)
Q Consensus         2 ~~~~g~~~g~~~~l~l~~~~~~~~~   26 (398)
                      |-++|.++|.+.+++++.+..++++
T Consensus        11 GaIAGiVvG~v~gv~li~~l~~~~~   35 (38)
T 2k1k_A           11 GEIVAVIFGLLLGAALLLGILVFRS   35 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeehHHHHHHHHHHHHHHHHe
Confidence            3477888888888887776555443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=82.73  E-value=0.92  Score=28.82  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=14.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcc
Q 015915            4 ISGVFMGMIFGIALMAGWRHMMRYRS   29 (398)
Q Consensus         4 ~~g~~~g~~~~l~l~~~~~~~~~~~~   29 (398)
                      ..|.+-|++...++...|..++++|+
T Consensus        14 A~gVVgGv~~~~ii~~~~~~~~RRr~   39 (44)
T 2ks1_B           14 ATGMVGALLLLLVVALGIGLFMRRRH   39 (44)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EeehhHHHHHHHHHHHHHHHHhhhhH
Confidence            34566666655555555555554443

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=82.48  E-value=7.1  Score=41.72  Aligned_cols=90  Identities=16%  Similarity=0.245  Sum_probs=61.3

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEE--cce---eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEE
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFD  334 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d  334 (398)
                      ...++|+|.++.++...   ..++-||.+.+  |+.   ....|+.+.-..+|.|||...|.+.  + |....|.+++|+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            56899999999988643   34677877765  331   1234554555678999999888773  2 456789999999


Q ss_pred             cc-C--C----------CCceeEEEEEECccccc
Q 015915          335 KD-I--G----------QDKRLGIVKLPLIDLEA  355 (398)
Q Consensus       335 ~d-~--~----------~d~~lG~~~i~l~~l~~  355 (398)
                      .. .  +          .+..+|.+.+++-+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~  326 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYKD  326 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTTS
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCcC
Confidence            64 2  2          24589999999977543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-21
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-19
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-16
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	9e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-14
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-14
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	7e-14
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-13
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-13
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	7e-13
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-12
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	6e-12
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-11
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	5e-07

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.7 bits (214), Expect = 3e-21
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIA 320
            P G + V +V A  L++ + +   DPY  +  +   +           P WN+TF    
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 321 EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKD 379
            +  T+    ++FDKD   +D  +G   +PL  +  +         +       +KD++ 
Sbjct: 67  SEGTTEL-KAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV-------VKDEEY 118

Query: 380 RGSITVKV 387
           +G I V +
Sbjct: 119 KGEIWVAL 126

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 6e-19
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 264 GKVAVTIVKANNLKN---MEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFEL 318
            K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVWN+TFE 
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
           I +  +   L   + D +   D+ LG     +  ++    KE        
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 112

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQ--TFE 317
              ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+  TF+
Sbjct: 32  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366
           +   +   ++L+  V+D D   +   +G  K+P+  ++     E    L 
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK----VKTNVVDNNLNPVWNQTFEL 318
           +  + V +  A NL  M+  G SDPY  + + P  K     KT  +  +LNP WN+TF  
Sbjct: 14  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73

Query: 319 -IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367
            + E  + + L  E++D D   ++  +G +   + +L+     +   +LL 
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 9e-16
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
           ++K  G + V ++KA +L   +  GKSDP+ ++ +    +++T+ V  NLNP WN+ F  
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTF 59

Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDK 377
             +D     L   VFD+D       LG V +PL+ +    P    L+           ++
Sbjct: 60  PIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQ 111

Query: 378 KDRGSITVKV 387
             +G I +++
Sbjct: 112 AFKGVIYLEM 121

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
              + V ++KA +L   ++ G SDPY  V++      + K KT+V     N V+N+   F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL 353
           ++  E  E  S+ F V D +   +++ +G + L     
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK----VKTNVVDNNLNPVWNQTFEL 318
             ++ VTI+ A +L + E     +PY  ++  P        +T  V   L P WNQTF  
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72

Query: 319 IA---EDKETQSLIFEVFDKD---IGQDKRLGIVKLPLIDLEAD 356
                 +   + L   ++D+      + + LG + + L     D
Sbjct: 73  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 3e-14
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 12/131 (9%)

Query: 249 GGIPVDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKV 299
           GGI     ++          GK+ V I++A NLK M++ G SDPY  +H+    K L K 
Sbjct: 5   GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK 64

Query: 300 KTNVVDNNLNPVWNQTFELIAEDKETQ--SLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD 356
           KT +  N LNP +N++F      ++ Q   ++  V D D IG++  +G V +      A+
Sbjct: 65  KTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

Query: 357 TPKEAELRLLP 367
               +++   P
Sbjct: 125 LRHWSDMLANP 135

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 7e-14
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGK-SDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFEL 318
            +    V I +A  L  M+     SDPY  + I P    KVKT V+   L+P +++TF  
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 319 I---AEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
                   +  +L F +   D   +D  +G V +PL  +E    K    R + S
Sbjct: 80  YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 7e-14
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 252 PVDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTN 302
             D  EL          G + VTI+KA+NLK M++ G SDPY    +      L K KT+
Sbjct: 3   KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTS 62

Query: 303 VVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
           +  N LNP +N+   F++  E  E   L   V D D IG ++ +G+ ++  
Sbjct: 63  IKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 113

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 252 PVDTSELELK---PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------ 296
           P+ T E++L+     G + + I++A NL   +  G SDP+  V++ P             
Sbjct: 4   PI-TGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62

Query: 297 -FKVKTNVVDNNLNPVWNQTF---ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLI 351
            +K +T  V  +LNP WNQT     +  E    ++L   V+D D    +  LG V + L 
Sbjct: 63  EYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122

Query: 352 DLEADTPKEAELRLLP 367
                        L  
Sbjct: 123 STSHLDNTPRWYPLKE 138

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.6 bits (156), Expect = 2e-13
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQT--FE 317
              ++ V I++A +L   +  G SDPY  +++ P    K +T V    LNP++N+T  F 
Sbjct: 16  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75

Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAEL 363
           +   +   + L F V+D D   +   +G V L  +   A+ P +  L
Sbjct: 76  VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.3 bits (153), Expect = 7e-13
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 15/123 (12%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQT--F 316
           QG + V I++  +L  M+  G SDP+  + +KP      K KT +    LNP +N+   +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 317 ELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
           ++   D   +SL   V+D D    +  +G  +L +                   + LK K
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHW--------YECLKNK 125

Query: 376 DKK 378
           DKK
Sbjct: 126 DKK 128

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           V + KA          K + Y  + ++   K  T +      P W Q F       +   
Sbjct: 6   VGVKKAKFDGAQ---EKFNTYVTLKVQN-VKSTT-IAVRGSQPSWEQDFMFEINRLDLGL 60

Query: 328 LIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387
            + EV++K +  D  +G V +PL  +     +E     L     L  +       I    
Sbjct: 61  TV-EVWNKGLIWDTMVGTVWIPLRTIRQS-NEEGPGEWLT----LDSQAIMADSEICGTK 114

Query: 388 GASKHSFNL 396
             + H   L
Sbjct: 115 DPTFHRILL 123

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 4e-12
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED 322
           + ++ +T++ A   +N +      PY  V +      KT   +N  +P W Q   +I   
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTP 63

Query: 323 KETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRG 381
                L F V+    +  D  LG   L + +       + E  ++        +  +  G
Sbjct: 64  V--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG 121

Query: 382 SITVKV 387
            +++ +
Sbjct: 122 DLSICL 127

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (146), Expect = 6e-12
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 261 KPQGKVAVTIVKANNL--KNMEMIGKSDPYAVVHIKPL----FKVKTNVV-DNNLNPVWN 313
           +P+ ++ V I+    L   N       DP  +V I  +       +T V+ +N  NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 314 QTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLID 352
             FE      +   + F V D D   ++  +G   +P   
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 100

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 7e-11
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 9/114 (7%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFE 317
             + ++ VT ++A         G  D Y    +       + +T +    L+  W +   
Sbjct: 23  CQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79

Query: 318 LIAEDKETQSLIFEVFDKD---IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368
           L   ++E  +    +  +      +    G ++L L              L  S
Sbjct: 80  LPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 14/112 (12%)

Query: 264 GKVAVTIVKANNLKNMEM-----------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW 312
           G + + I +A +LK                   DPY  +++      +T       +P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 313 NQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAEL 363
           +  F     +         VF    IG D  +    +   +L  +  +  E 
Sbjct: 66  HDEFVTDVCNGRKIE--LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-------FKVKTNVVDNNLNPVWNQT--F 316
           +++T++    L           Y  V +  L       ++ K +   N++NPVW +    
Sbjct: 3   LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 317 ELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPL 350
                  E  SL   V ++    +K LG   +P+
Sbjct: 59  FEKILMPELASLRVAVMEEG---NKFLGHRIIPI 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.88
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.87
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.82
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.81
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.77
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.75
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.73
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.7
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.7
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.68
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.66
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.66
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.64
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.58
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.33
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	90.84

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.4e-23  Score=166.23  Aligned_cols=121  Identities=28%  Similarity=0.439  Sum_probs=104.5

Q ss_pred             CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ  339 (398)
Q Consensus       261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~  339 (398)
                      .+.|.|+|+|++|++|+.++..|.+||||++++++ .+++|+++++|.||.|||+|.|.+.++ .+.|.++|||++ .++
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~   80 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP   80 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-eEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence            57899999999999999999999999999999998 678999999999999999999999875 468999999999 888


Q ss_pred             CceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915          340 DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH  392 (398)
Q Consensus       340 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~  392 (398)
                      |++||++.++++++..+.  ..|+.|...     ...++.+|+|+++++  |.
T Consensus        81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~-----~~~~~~~G~i~l~~~--~i  124 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNK-----DLEQAFKGVIYLEMD--LI  124 (126)
T ss_dssp             EEECCBCEEEGGGCCSSC--CEECCCBCS-----CTTSCCSSEEEEEEE--EE
T ss_pred             cceEEEEEEEHHHCCCCC--ceEEEcccc-----CCCCceeEEEEEEEE--EE
Confidence            999999999999997654  356655431     234556899999998  64

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=4.4e-22  Score=164.37  Aligned_cols=124  Identities=26%  Similarity=0.456  Sum_probs=105.8

Q ss_pred             cCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCCCCeEEEEEEEcc-C
Q 015915          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I  337 (398)
Q Consensus       260 ~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~  337 (398)
                      ..+.|+|+|+|++|++|+.++..|++||||++++++ ...+|++++ ++.||.|||+|.|.+.+. ...|+|+|||+| .
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~   83 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSC
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-eeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCC
Confidence            367899999999999999999999999999999987 467787776 689999999999999874 457999999999 8


Q ss_pred             CCCceeEEEEEECccccccc-ccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          338 GQDKRLGIVKLPLIDLEADT-PKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      ++|++||++.++|.++.... ....|+.+.        .+++.+|+|+++++  |.|..
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~--------~~~~~~G~i~l~l~--~~p~~  132 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVV--------KDEEYKGEIWVALS--FKPSG  132 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEE--------ETTEEEEEEEEEEE--EEECC
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEec--------CCCccCEEEEEEEE--EEeCC
Confidence            89999999999999986543 345677663        34567899999999  99964

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.9e-21  Score=154.28  Aligned_cols=119  Identities=23%  Similarity=0.420  Sum_probs=103.2

Q ss_pred             CcEEEEEEeeeeecccC---cCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccC
Q 015915          263 QGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDI  337 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~---d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~  337 (398)
                      .+.|+|+|++|+||+..   |..|.+||||++++++  ..+++|+++.++.||.|||+|.|.+.+.....|.++|||+|.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            46899999999999874   4568999999999975  356899999999999999999999988777789999999996


Q ss_pred             CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          338 GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       338 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      .+|++||++.++|+++..+...+.|++|.+          ...|+|++++.  +.|
T Consensus        82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~----------~~~g~i~~~l~--~~~  125 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VTEMVLEMSLE--VAS  125 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETT----------TEEEEEEEEEE--CCC
T ss_pred             CCCCeEEEEEEEHHHccCCCeEEEEEEccC----------CCeEEEEEEEE--EEe
Confidence            678999999999999988888889998843          34689999988  766

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.82  E-value=6.5e-20  Score=151.11  Aligned_cols=117  Identities=19%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             CcEEEEEEeeeeecccCc-----------CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEE
Q 015915          263 QGKVAVTIVKANNLKNME-----------MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFE  331 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~  331 (398)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++.....+|++++++.||.|||+|.|.+.+  .+.|+++
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~   82 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEE
Confidence            699999999999998754           356789999999998666799999999999999999999976  3689999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccc--cceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTP--KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN  395 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~  395 (398)
                      |||++ .++|++||.+.++|+++..+..  .+.|++|.            +.|+|++.++  +.|..
T Consensus        83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------p~G~v~l~v~--~~~~~  135 (136)
T d1gmia_          83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------PEGKVYVIID--LSGSS  135 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEE--EEEEE
T ss_pred             EEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC------------CCcEEEEEEE--EEeCC
Confidence            99999 8999999999999999976543  56788773            3699999999  88753

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-19  Score=147.21  Aligned_cols=124  Identities=19%  Similarity=0.299  Sum_probs=98.3

Q ss_pred             CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK  341 (398)
Q Consensus       263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~  341 (398)
                      .+.|.|+|++|++++.++..+.+||||++.+++ +.++|++++++.||.|||.|.|.+.+  .+.|+|+|||+| .++|+
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~   81 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDV   81 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-eEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCc
Confidence            478999999999999988889999999999998 57899999999999999999999875  468999999999 99999


Q ss_pred             eeEEEEEECcccccccc---cceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915          342 RLGIVKLPLIDLEADTP---KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF  394 (398)
Q Consensus       342 ~lG~~~i~l~~l~~~~~---~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~  394 (398)
                      +||++.++|.++.....   ...++.+...   .........|+|.+.+.  +...
T Consensus        82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~---~~~~~~~~~G~L~v~l~--~~~~  132 (133)
T d2nq3a1          82 LLGTAALDIYETLKSNNMKLEEVVVTLQLG---GDKEPTETIGDLSICLD--GLQL  132 (133)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEE---ESSCTTSEEEEEEEEEE--SEEC
T ss_pred             eEEEEEEEHHHhhhhcCCceeeEEEEEecC---CCCCCceEEEEEEEEEe--eEEc
Confidence            99999999999854321   2233332111   11244456799999988  7653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=7.6e-19  Score=143.89  Aligned_cols=105  Identities=28%  Similarity=0.484  Sum_probs=91.7

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCC-CCeEEEEEEEcc
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVFDKD  336 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~L~v~v~d~d  336 (398)
                      ..+.|+|+|++|+||+.+|..|.+||||++++.+    ..+++|+++++|.||.|||+|.|.+.... ...|.|+|||+|
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            4689999999999999999999999999999832    35689999999999999999999986532 457999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                       .++|++||.+.++++++..+ ..+.|++|.+
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence             89999999999999998754 4578999865

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=9.8e-19  Score=145.24  Aligned_cols=111  Identities=28%  Similarity=0.394  Sum_probs=97.0

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~  331 (398)
                      +..|....+.|+|+|++|+||+.++..|.+||||++++.+  ..+++|++++++.||.|||+|.|.+...  ....|.|+
T Consensus        26 sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~  105 (143)
T d1rsya_          26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMA  105 (143)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEE
Confidence            3345567899999999999999999899999999999843  3568999999999999999999988532  45689999


Q ss_pred             EEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915          332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      |||++ .+++++||++.++|+++..+.....|++|.
T Consensus       106 V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         106 VYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             EEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            99999 889999999999999998887788999885

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=6.4e-18  Score=138.07  Aligned_cols=117  Identities=23%  Similarity=0.363  Sum_probs=89.8

Q ss_pred             cEEEEEEeeeeecccC--cCCCCCCcEEEEEEcc----eeeEeccccCC-CCCceeccEEEEEeecCCCCeEEEEEEEcc
Q 015915          264 GKVAVTIVKANNLKNM--EMIGKSDPYAVVHIKP----LFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVFDKD  336 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~--d~~g~~dpyv~v~~~~----~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d  336 (398)
                      ..|+|+|++|++|+..  +..+++||||++++.+    ..+++|+++++ ++||.|||+|.|.+..+....|.++|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  4568899999999842    35788988765 579999999999987766778999999999


Q ss_pred             -CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915          337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG  388 (398)
Q Consensus       337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~  388 (398)
                       .++|++||++.++|+++..+.   .|++|...     ....-..|+|.+++.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~-----~g~~~~~~~L~v~i~  128 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK-----NGDQHPSATLFVKIS  128 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEE---EEEEEECT-----TSCEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCC---EEEECCCC-----CcCCCCCCEEEEEEE
Confidence             889999999999999997653   46776431     111223567877777

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=6.7e-19  Score=146.02  Aligned_cols=106  Identities=28%  Similarity=0.366  Sum_probs=92.2

Q ss_pred             CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-------------eeeEeccccCCCCCceeccEEEEEee---cCCC
Q 015915          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-------------LFKVKTNVVDNNLNPVWNQTFELIAE---DKET  325 (398)
Q Consensus       262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~~kT~~~~~t~nP~Wne~f~~~v~---~~~~  325 (398)
                      ..|.|+|+|++|+||+.++..|.+||||++++.+             ..++||++++++.||.|||+|.|...   +...
T Consensus        16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCC
Confidence            3689999999999999999999999999999842             12368999999999999999998742   2245


Q ss_pred             CeEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          326 QSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       326 ~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      ..|.++|||+| .++|++||++.++|+++..+.....|++|.+
T Consensus        96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~  138 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             CEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence            68999999999 8999999999999999988888889999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=3.3e-18  Score=139.65  Aligned_cols=113  Identities=26%  Similarity=0.330  Sum_probs=92.9

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v  330 (398)
                      ++..|.+..+.|+|+|++|+||+.++..|.+||||++++.+  ..+++|++++++.||.|||+|.|.+...  ....|.|
T Consensus         9 ~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v   88 (130)
T d1dqva1           9 FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHF   88 (130)
T ss_dssp             EEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEE
T ss_pred             EEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEE
Confidence            33445678899999999999999999999999999999953  3568999999999999999999998543  3567999


Q ss_pred             EEEEcc-CCCCceeEEEEEECccc-cc-ccccceEEeccc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDL-EA-DTPKEAELRLLP  367 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l-~~-~~~~~~~~~L~~  367 (398)
                      +|||++ .++|++||++.+++... .. ......|++|.+
T Consensus        89 ~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          89 SVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             EEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             EEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            999999 89999999999986543 33 223457998864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.1e-17  Score=132.94  Aligned_cols=119  Identities=22%  Similarity=0.238  Sum_probs=91.9

Q ss_pred             cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCcee
Q 015915          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRL  343 (398)
Q Consensus       264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~l  343 (398)
                      +.|.|+|.+|++|..+|   +.||||++++++ .+.+|.+++ +.||.|||+|.|.+.++ ...|.++|||++..+|++|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~-~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l   75 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN-VKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV   75 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT-EEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC-EEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence            67999999999999876   679999999997 578888886 55999999999999876 5689999999995569999


Q ss_pred             EEEEEECccccccc--ccceEEecccccccc--c--ccCCCcccEEEEEEe
Q 015915          344 GIVKLPLIDLEADT--PKEAELRLLPSLDML--K--IKDKKDRGSITVKVG  388 (398)
Q Consensus       344 G~~~i~l~~l~~~~--~~~~~~~L~~~~~~~--~--~~~~~~~G~I~l~l~  388 (398)
                      |++.++|+++..+.  ....|+.|.......  .  .........|.++++
T Consensus        76 G~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~  126 (128)
T d2cjta1          76 GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAH  126 (128)
T ss_dssp             EEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEE
T ss_pred             EEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEE
Confidence            99999999997533  356799985432100  0  011123457888887

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.8e-17  Score=132.71  Aligned_cols=109  Identities=16%  Similarity=0.125  Sum_probs=93.0

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc---eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v  330 (398)
                      +..|....+.|.|+|++|++|..   .|.+||||++++.+   ...++|++++++.||.|||+|.|.+...  ....|.|
T Consensus        18 sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~   94 (138)
T d1wfma_          18 CLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTL   94 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEE
T ss_pred             EEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEE
Confidence            33455678999999999999953   46799999999954   2357899999999999999999998543  4568999


Q ss_pred             EEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      +|||++ .+++++||++.++|.++......+.|++|.+
T Consensus        95 ~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          95 TLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             EEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             EEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            999999 8999999999999999987777889999965

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4e-17  Score=132.12  Aligned_cols=108  Identities=25%  Similarity=0.298  Sum_probs=87.1

Q ss_pred             ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEE-eec--CCCCeEE
Q 015915          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQSLI  329 (398)
Q Consensus       257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~~L~  329 (398)
                      ..|.+..+.|+|+|++|+||+.++..+.+||||++++.+    ..+++|++++++.||.|||+|.|. +..  .....|.
T Consensus         7 l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~   86 (125)
T d2bwqa1           7 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLE   86 (125)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEE
T ss_pred             EEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEE
Confidence            345677899999999999999999899999999999842    356899999999999999999996 432  2345799


Q ss_pred             EEEEEcc-C--CCCceeEEEEEECcccccccccceEEec
Q 015915          330 FEVFDKD-I--GQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       330 v~v~d~d-~--~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      |+|||++ .  .++++||++.++++++..... ..|++|
T Consensus        87 i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L  124 (125)
T d2bwqa1          87 ITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL  124 (125)
T ss_dssp             EEEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred             EEEEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence            9999999 4  445699999999999876543 579887

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-16  Score=130.51  Aligned_cols=111  Identities=27%  Similarity=0.371  Sum_probs=89.3

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCC-CCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEe-ecC--CCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIG-KSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIA-EDK--ETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g-~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v-~~~--~~~~L  328 (398)
                      ++..|....+.|+|+|++|+||+.++..+ .+||||++++.+  ..+++|++++++.||.|||+|.|.. ...  ....|
T Consensus        13 ~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L   92 (138)
T d1ugka_          13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELAL   92 (138)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceE
Confidence            34456677899999999999999988665 479999999943  3578999999999999999999964 321  24579


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccc-cceEEec
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTP-KEAELRL  365 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L  365 (398)
                      +|+|||+| .++|++||++.++|+++..... ...|..+
T Consensus        93 ~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          93 HFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            99999999 8899999999999999865443 3455554

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.9e-16  Score=128.43  Aligned_cols=108  Identities=24%  Similarity=0.270  Sum_probs=82.5

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~  329 (398)
                      +..|.+..+.|.|+|++|+||+.++..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+...  ....|.
T Consensus         7 sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~   86 (138)
T d1w15a_           7 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVE   86 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEE
T ss_pred             EEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEE
Confidence            3445677899999999999999999889999999999842    2356899999999999999999998543  344689


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL  365 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L  365 (398)
                      |+|||+| .+++++||++.+++.+...+  ...|+++
T Consensus        87 i~v~d~~~~~~~~~iG~~~i~l~~~~~~--~~hW~~l  121 (138)
T d1w15a_          87 FLVLDSERGSRNEVIGRLVLGATAEGSG--GGHWKEI  121 (138)
T ss_dssp             EEEEECCTTSCCEEEEEEEESTTCCSHH--HHHHHHH
T ss_pred             EEEEeCCCCCCCCEEEEEEEcchhCCch--HHHHHHH
Confidence            9999999 89999999999999875332  2345554

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4.7e-16  Score=130.84  Aligned_cols=99  Identities=33%  Similarity=0.505  Sum_probs=85.2

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L  328 (398)
                      ++..|.+..+.|.|+|++|+||+..+..+.+||||++++.+    ...++|++++++.||.|||+|.|.+...  ....|
T Consensus        16 ~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l   95 (157)
T d1uowa_          16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV   95 (157)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEE
T ss_pred             EEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEE
Confidence            34445677899999999999999999889999999999854    2346899999999999999999998654  34579


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDL  353 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l  353 (398)
                      .++|||++ .+++++||++.+++.+.
T Consensus        96 ~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          96 VVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             EEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             EEEEcccCCCCCCceeEEEEEecccC
Confidence            99999999 89999999999999764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.3e-16  Score=126.89  Aligned_cols=110  Identities=26%  Similarity=0.329  Sum_probs=91.6

Q ss_pred             cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (398)
Q Consensus       256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~  329 (398)
                      +..|.+..|.|+|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+...  ....|.
T Consensus         7 ~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~   86 (137)
T d2cm5a1           7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLD   86 (137)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEE
Confidence            3345678899999999999999998889999999999843    3467999999999999999999998643  356799


Q ss_pred             EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      +++||++ .++|++||++.++++++..  ..+.|+++.+
T Consensus        87 v~v~~~~~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~  123 (137)
T d2cm5a1          87 ISVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYECLK  123 (137)
T ss_dssp             EEEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHHHH
T ss_pred             EEeeeCCCCCCCCEEEEEEeCccccCc--chhhhhhHhh
Confidence            9999999 8999999999999987643  3456776653

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.1e-15  Score=121.27  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=82.2

Q ss_pred             EEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCcee
Q 015915          268 VTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRL  343 (398)
Q Consensus       268 V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~l  343 (398)
                      |.+..+..+  +...+.+||||++++.+.    ...+|+++++|+||+|||+|+|.+.+  .+.|.+.|||+|   |+++
T Consensus         9 ~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~~~   81 (123)
T d1bdya_           9 FNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---EDPM   81 (123)
T ss_dssp             EEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TEEE
T ss_pred             EEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---cccc
Confidence            333444443  334689999999999642    34678889999999999999999975  468999999986   7899


Q ss_pred             EEEEEECccccc-----ccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915          344 GIVKLPLIDLEA-----DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS  393 (398)
Q Consensus       344 G~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P  393 (398)
                      |.+.+++.++..     +...+.|++|.            ++|+|+++++  |++
T Consensus        82 g~~~i~l~~l~~~~~~~~~~~~~W~~L~------------~~Gkl~l~v~--~f~  122 (123)
T d1bdya_          82 SEVTVGVSVLAERCKKNNGKAEFWLDLQ------------PQAKVLMCVQ--YFL  122 (123)
T ss_dssp             EEEEEEHHHHHHHHHTTTTEEEEEEECB------------SSCEEEEEEE--EEE
T ss_pred             CccEEehhheeeccccCCCcccEEEeCC------------CCEEEEEEEE--Eec
Confidence            999999998854     33456788763            4799999999  875

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.5e-16  Score=130.80  Aligned_cols=112  Identities=31%  Similarity=0.434  Sum_probs=92.4

Q ss_pred             ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (398)
Q Consensus       255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L  328 (398)
                      ++..|.+..|.|+|+|++|+||+..+..+.+||||++++.+.    .+++|++++++.||.|||+|.|.+..  .....|
T Consensus        11 ~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l   90 (145)
T d1dqva2          11 FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL   90 (145)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCC
T ss_pred             EEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEE
Confidence            444566788999999999999999988899999999998642    35789999999999999999998753  234579


Q ss_pred             EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915          329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP  367 (398)
Q Consensus       329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~  367 (398)
                      .+.|||++ .++|++||++.++++.+... ....|+++..
T Consensus        91 ~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~  129 (145)
T d1dqva2          91 SIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEMLA  129 (145)
T ss_dssp             CCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred             EEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHHh
Confidence            99999999 89999999999999887533 3456776653

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.4e-12  Score=102.78  Aligned_cols=92  Identities=24%  Similarity=0.371  Sum_probs=69.7

Q ss_pred             EEEEEEeeeeecccCcCCCCCCcEEEEEEcc-----eeeEeccc--cCCCCCceeccE-EEE-EeecCCCCeEEEEEEEc
Q 015915          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNV--VDNNLNPVWNQT-FEL-IAEDKETQSLIFEVFDK  335 (398)
Q Consensus       265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~kT~~--~~~t~nP~Wne~-f~~-~v~~~~~~~L~v~v~d~  335 (398)
                      +|+|+|++|++|+.+    +.||||++++-+     ..+.+|++  ..+++||.|||+ |.+ .+..++...|.+.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999764    589999999832     23344444  467899999976 444 45555556899999997


Q ss_pred             cCCCCceeEEEEEECcccccccccceEEecc
Q 015915          336 DIGQDKRLGIVKLPLIDLEADTPKEAELRLL  366 (398)
Q Consensus       336 d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~  366 (398)
                      |   |+++|++.+|++.+..|-   .+.+|.
T Consensus        78 d---~~~lG~~~ipl~~l~~Gy---R~vpL~  102 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSGY---HHLCLH  102 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCEE---EEEEEE
T ss_pred             C---CCEEEEEEEEcccCcCCc---eEEEcc
Confidence            5   899999999999997663   345554