Citrus Sinensis ID: 015916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHcccccHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEHHHEHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHcHHHccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGFEVSYTSSAGKWLGFVTAVWVQAIsgnnytfsnYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAglasdripaPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCmggnsttwMNTAVLVTCIRNfrrnrgpvsgilKGYVGLSTAIFTDLCsalfaddpaKFLFMLAIVPFVVCLGAIFFlrettpastvdeekEEAKYFSIINTVAIVVALYLQVYdflpnkseTLALIFSGILIILLaspvaipvySFIKswnlnrkrtepdveeqqvvepllngettgteeVVAVEDTVVAVVAVEevkrrpvlgedhtIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Flexible Loop (DISEMBL)
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNfrrnrgpvsGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRettpastvdeeKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSwnlnrkrtepdveeqqvvepllngettgteevvavEDTVVAVVAveevkrrpvlgedhTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Low Complexity Region (SEG)
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDveeqqvvePLLNGettgteevvavedtvvavvaveevKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Disordered region (IsUnstruct)
******YTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA********EAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR************VEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMV**
Disordered Region (DISOPRED)
*************WLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSF*********************************************************GEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Disordered Region (DISEMBL)
*********SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRK*********QVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Disordered Region (DISPRO)
**FEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA*****EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN******************************************VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIKMVHC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q03795	547	Uncharacterized membrane	yes	no	0.904	0.658	0.233	1e-06
Q5AXV1	615	Probable transporter mch1	yes	no	0.432	0.279	0.282	5e-05
Q9P3K8	598	Probable transporter MCH1	N/A	no	0.743	0.494	0.221	0.0005

>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 169/406 (41%), Gaps = 46/406 (11%)

Query: 8   TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GL 66
           T+  G    FV    V   +G  Y FS Y+  L +  ++     + LS    IG +  G+
Sbjct: 13  TNHFGHLKSFVGGNVVALGAGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGI 72

Query: 67  LAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN 126
           LAG+  DR P  +  LIGS+   + Y    L +  K +  S + + + L + G  +    
Sbjct: 73  LAGIVVDRSPK-LSCLIGSMCVFIAY--LILNLCYKHEWSSTFLISLSLVLIGYGSVSGF 129

Query: 127 TAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIVPFVV 185
            A +     NF ++RG          GLS  +F+ LCS LF ++    F+F++     ++
Sbjct: 130 YASVKCANTNFPQHRGTAGAFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVACGCMI 189

Query: 186 CLG----AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLAL 241
            +G     IF   E   AS  + E ++++      T   +V LY    D++ +   +   
Sbjct: 190 LVGYFSLDIFSNAEGDDASIKEWELQKSR-----ETDDNIVPLYENSNDYIGSPVRS--- 241

Query: 242 IFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVV-EPLLNGETTGTEEVVAV 300
                     +SP     Y+   S N         +E++Q+   PLL+  +  T+     
Sbjct: 242 ----------SSPATYETYAL--SDNFQETSEFFALEDRQLSNRPLLSPSSPHTKYDFED 289

Query: 301 EDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF--WILFVSFLCGVG------TGLAVM 352
           E+T    V     ++   L     +F+++ +  F  + + +  L GVG       G  V 
Sbjct: 290 ENTSKNTVGENSAQKSMRL----HVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQ 345

Query: 353 NNMGQIGLALGYVDV----SIFVSLTSIWGFFGRIISGSVSEYFIK 394
             +    L    ++     S+ V+L S+  F GR+ SG +S++ +K
Sbjct: 346 AQVSTPPLNQLPINAEKIQSLQVTLLSLLSFCGRLSSGPISDFLVK 391

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5AXV1|MCH1_EMENI Probable transporter mch1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mch1 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 33/205 (16%)

Query: 27  SGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGL-LAGLASDRI-PAPIILLIG 84
           +G+   FS Y   L T +N TQL +N +S+   I     + LAG   DR  P+P+ L  G
Sbjct: 94  AGSITAFSLYGPLLLTRLNYTQLRVNEVSIAAGISMYLPVSLAGYLCDRYSPSPLTLFAG 153

Query: 85  SLEGLVGYGAQWLVVSRKIQPLS------YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR 138
              GL GY     V      P +      +W M V     G +T  M  A + TC +NF 
Sbjct: 154 IAFGL-GYSLAAFVYKSGPPPDAGGNGWPFWVMVVAFIAIGVATCSMYLAAVTTCAKNFG 212

Query: 139 RNRGP------------VSGILKGYVG---LSTAIFTDLCSALFADDPAKFLFMLAIVPF 183
           R +              +SG+ +  VG   L   +    C  +   D  K+   LAI+  
Sbjct: 213 RGKHKGIILAVPIAAFGLSGMWQSQVGTYFLCERLKDSNCGDV---DVYKYFLFLAILLL 269

Query: 184 VVCLGAIFFLRETTPASTVDEEKEE 208
            + +   F LR       VD+E+E+
Sbjct: 270 TIGVIGTFALR------IVDDEEEK 288

Probable transporter.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 137/384 (35%), Gaps = 88/384 (22%)

Query: 9   SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGL-L 67
           +++ + L F +A+     +G+   FS Y    +  ++ TQ E+N LS          + L
Sbjct: 52  AASARNLSFASALLSSLCAGSITIFSMYGHIFQERLHYTQFEVNGLSSAASFATYMPVPL 111

Query: 68  AGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ--------------PLSYWQMCV 113
            G   DR+    +  + +L    GYG    V  R+                 L+Y  M  
Sbjct: 112 LGYMCDRVGPGPLSFVSALFFAAGYGLAAGVYKREADGAALGNGADGEDTGRLAYAAMIT 171

Query: 114 FLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSAL----F 167
                G  T  M  + + TC +NF R  +RG    +     GLS    + L S +    F
Sbjct: 172 AFVFIGVGTCSMYMSAVATCAKNFGRGKHRGLALAVPIAAFGLSGMWQSQLGSRVFYERF 231

Query: 168 AD------DPAKFLFMLAIVPFVV-CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAI 220
           AD      D   F   L ++ FVV CLG  F L+       +DE  EE           +
Sbjct: 232 ADGTKGDLDVFHFFIFLGVLLFVVGCLG-TFGLKIVDEEDLIDEAVEE-----------L 279

Query: 221 VVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR------KRTE 274
             + YL    FL                                SW  +R      +++ 
Sbjct: 280 ERSGYLDGSTFLQG------------------------------SWTADRPGYGAIEQSP 309

Query: 275 PDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF 334
            D+E   +++P      + +EE    ++  +    V   + R  L  DHT+         
Sbjct: 310 LDMESAGILDPSKPDNDSDSEE--EDDNARIKKTWVLNAETRRFL-TDHTM--------- 357

Query: 335 WILFVSFLCGVGTGLAVMNNMGQI 358
           W   + F   +G G A +NN+G +
Sbjct: 358 WCFALGFFLMIGPGEAFINNLGTV 381

Probable transporter.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
224080606	564	predicted protein [Populus trichocarpa]	0.987	0.696	0.746	1e-174
224103219	564	predicted protein [Populus trichocarpa]	0.984	0.695	0.730	1e-173
297798430	567	nodulin family protein [Arabidopsis lyra	0.934	0.656	0.684	1e-156
15236224	567	major facilitator family protein [Arabid	0.934	0.656	0.679	1e-155
46931328	411	At4g34950 [Arabidopsis thaliana]	0.934	0.905	0.679	1e-155
225427985	549	PREDICTED: uncharacterized protein LOC10	0.977	0.708	0.695	1e-155
297836364	545	nodulin family protein [Arabidopsis lyra	0.974	0.711	0.713	1e-151
15227274	546	putative nodulin protein [Arabidopsis th	0.977	0.712	0.711	1e-150
217074484	552	unknown [Medicago truncatula] gi|3884984	0.959	0.692	0.701	1e-150
449489670	541	PREDICTED: uncharacterized LOC101216743	0.927	0.682	0.679	1e-149

>gi|224080606|ref|XP_002306177.1| predicted protein [Populus trichocarpa] gi|222849141|gb|EEE86688.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/407 (74%), Positives = 347/407 (85%), Gaps = 14/407 (3%)

Query: 1   MGFE--VSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVK 58
           MGF    S + SA KWLGFVTAVWVQAISGNNYTFSNYSDALK+LMNLTQLELNNLSV K
Sbjct: 1   MGFHQTSSISFSATKWLGFVTAVWVQAISGNNYTFSNYSDALKSLMNLTQLELNNLSVAK 60

Query: 59  DIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118
           D+GKAFGLLAGLASDR+P P+ILLIGS+EGL+GYG QWLVVS +IQPL YWQMC+FLC+G
Sbjct: 61  DVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLVVSGRIQPLPYWQMCIFLCLG 120

Query: 119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178
           GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALFA DPAKFL ML
Sbjct: 121 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFAYDPAKFLIML 180

Query: 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET 238
           A++PF VCL AI FLRET PA+T++EEKEE+KYF+I N VA++VA+YL  Y F+PN S  
Sbjct: 181 AVIPFAVCLTAIVFLRETPPAATIEEEKEESKYFNIFNAVAVIVAVYLMAYGFIPNPSHA 240

Query: 239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTE-EV 297
           ++L FS IL++LLASP+A PV++FIKSW LNR + + DV E+Q+ EPLL  E    E + 
Sbjct: 241 ISLAFSVILLVLLASPLAAPVHAFIKSWTLNRFKNQADV-ERQIQEPLLIEEKAQEEIQE 299

Query: 298 VAVEDTVVAVV----AVE------EVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347
              E++  AVV    AVE      EVKRRPV+GEDHTIFEAM TVDFW+LFVSFLCGVGT
Sbjct: 300 KPAEESASAVVEQPQAVEEEKAAVEVKRRPVIGEDHTIFEAMQTVDFWVLFVSFLCGVGT 359

Query: 348 GLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           GLAVMNNMGQIGLALGY DVS+F+S+TSIWGFFGRI+SGSVSEY+IK
Sbjct: 360 GLAVMNNMGQIGLALGYADVSLFISMTSIWGFFGRIVSGSVSEYYIK 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103219|ref|XP_002312970.1| predicted protein [Populus trichocarpa] gi|222849378|gb|EEE86925.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 298/408 (73%), Positives = 345/408 (84%), Gaps = 16/408 (3%)

Query: 1   MGF-EVSYTS-SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVK 58
           MG+ + S TS  A KWLGFVTAVWVQAISGNNYTFSNYSDALKTLM+LTQLELNNLSV K
Sbjct: 1   MGYLQTSSTSFKATKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMSLTQLELNNLSVAK 60

Query: 59  DIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118
           D+GKAFGLLAGLASDR+P P+ILLIGS+EGL+GYG QWLVVSR+IQPLSYWQMC+FLC+G
Sbjct: 61  DVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLVVSRRIQPLSYWQMCIFLCLG 120

Query: 119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178
           GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALFADDPAKFL ML
Sbjct: 121 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFADDPAKFLIML 180

Query: 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET 238
           A++PF VCL AI FLRET PA+T++EEKEE+KYF++ N VA++VA+YL  Y F+PN S  
Sbjct: 181 AVIPFAVCLTAIVFLRETPPAATIEEEKEESKYFNLFNVVAVIVAVYLLAYSFIPNPSHV 240

Query: 239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVV 298
           L+ +FS IL++LLASP+A+P ++FI SWNLNR + + DV E+Q+ EPLL  + T  E++ 
Sbjct: 241 LSSVFSLILLVLLASPLAVPAHAFINSWNLNRFKNQEDV-ERQIQEPLLREDKT-QEKIQ 298

Query: 299 AVEDTVVAVVAVEEVK------------RRPVLGEDHTIFEAMWTVDFWILFVSFLCGVG 346
                  A   VE  +            RRPV+GEDHT+FEAM TVDFWILF+SFLCGVG
Sbjct: 299 EKPAEEAAKAVVERTRAVEEEKAVEVVKRRPVIGEDHTVFEAMSTVDFWILFLSFLCGVG 358

Query: 347 TGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           TGLAVMNNMGQIGLALGY DVS+FVS+TSIWGFFGRIISG+VSEY+IK
Sbjct: 359 TGLAVMNNMGQIGLALGYADVSLFVSMTSIWGFFGRIISGTVSEYYIK 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798430|ref|XP_002867099.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297312935|gb|EFH43358.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/406 (68%), Positives = 326/406 (80%), Gaps = 34/406 (8%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KDIGKAFG+LAGLAS
Sbjct: 16  KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDIGKAFGILAGLAS 75

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           DR+  P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76  DRLSTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF  DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFTSDPASFLVLLSVVPFAVCLTAVFF 195

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
           LRE  P++T DE+ EE+KYF++ N VA+VVA+YLQ YD +  K+   ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTSDEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255

Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV-- 310
           SP+A+P ++FI+S    +   E DV E ++ EPLL    +G+E  + VE+T+V   A   
Sbjct: 256 SPIAVPFHAFIRS----KDHDEQDV-EGRIDEPLLR---SGSE--IEVEETMVGAAAAAD 305

Query: 311 ------------EEV----------KRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
                       EEV          K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLNNEEVENHGNVVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365

Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236224|ref|NP_195221.1| major facilitator family protein [Arabidopsis thaliana] gi|5123712|emb|CAB45456.1| putative protein [Arabidopsis thaliana] gi|7270446|emb|CAB80212.1| putative protein [Arabidopsis thaliana] gi|332661040|gb|AEE86440.1| major facilitator family protein [Arabidopsis thaliana]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/406 (67%), Positives = 325/406 (80%), Gaps = 34/406 (8%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KD+GKAFG+LAGLAS
Sbjct: 16  KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           DR+  P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76  DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFF 195

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
           LRE  P++T  E+ EE+KYF++ N VA+VVA+YLQ YD +  K+   ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255

Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVA--- 309
           SPVA+P ++FI+S    +   E DV E ++ EPLL    +G+E  + VE+T+V   A   
Sbjct: 256 SPVAVPFHAFIRS----KVHDEQDV-EGRIDEPLLR---SGSE--IEVEETIVGAAAAAD 305

Query: 310 ---------------------VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
                                V   K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365

Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46931328|gb|AAT06468.1| At4g34950 [Arabidopsis thaliana]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/406 (67%), Positives = 325/406 (80%), Gaps = 34/406 (8%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KD+GKAFG+LAGLAS
Sbjct: 16  KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           DR+  P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76  DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFSVCLTAVFF 195

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
           LRE  P++T  E+ EE+KYF++ N VA+VVA+YLQ YD +  K+   ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255

Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVA--- 309
           SPVA+P ++FI+S    +   E DV E ++ EPLL    +G+E  + VE+T+V   A   
Sbjct: 256 SPVAVPFHAFIRS----KVHDEQDV-EGRIDEPLLR---SGSE--IEVEETIVGAAAAAD 305

Query: 310 ---------------------VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
                                V   K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365

Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427985|ref|XP_002277695.1| PREDICTED: uncharacterized protein LOC100260696 [Vitis vinifera] gi|297744630|emb|CBI37892.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/394 (69%), Positives = 320/394 (81%), Gaps = 5/394 (1%)

Query: 1   MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDI 60
           MGF +S  SS+ KWLGFVTAVWVQ+ISGNNYTFSNYSDALK+LM LTQL+LNNLSV KD+
Sbjct: 1   MGFHLSPASSSRKWLGFVTAVWVQSISGNNYTFSNYSDALKSLMALTQLQLNNLSVAKDV 60

Query: 61  GKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120
           GKAFGLL+GLASDR+  P++LLIGS+EGLVGYG QWLVVSRKIQPL YWQMC+FLCMGGN
Sbjct: 61  GKAFGLLSGLASDRLSTPMMLLIGSIEGLVGYGVQWLVVSRKIQPLPYWQMCIFLCMGGN 120

Query: 121 STTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI 180
           STTWMNTAVLVTCIRNFR NRGPVSGILKGYVGLSTAIFTDLC+ALFADDPA FL MLAI
Sbjct: 121 STTWMNTAVLVTCIRNFRTNRGPVSGILKGYVGLSTAIFTDLCTALFADDPAIFLLMLAI 180

Query: 181 VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLA 240
           +P +VCL AI FLRE   +ST   EKEE K+F++ N VA+V+A+YL  +D   + S  L+
Sbjct: 181 IPLLVCLSAILFLREVPSSSTAAGEKEETKFFNLFNIVAVVLAVYLLTFDVTGSHSRILS 240

Query: 241 LIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAV 300
             F+ +L+ LLA P++IP+Y  ++ +N +  +   D+ E  + E LL+  +       A 
Sbjct: 241 QAFAVVLLFLLACPLSIPLYFMLQDFNRSGSKPSSDI-EGLITETLLSQNSQPEMAAPAS 299

Query: 301 EDTVVAVVAVEEVKR-RPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
           E+ V  VV   E+KR RP +GEDHTI EA+ T DFWILF SFLCGVGTGLAVMNNMGQ+G
Sbjct: 300 EEKVEPVV---EIKRPRPSIGEDHTIIEAISTTDFWILFASFLCGVGTGLAVMNNMGQMG 356

Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFI 393
           LALGYVDVSIFVSLTSIWGFFGRI+SGSVSEYFI
Sbjct: 357 LALGYVDVSIFVSLTSIWGFFGRILSGSVSEYFI 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836364|ref|XP_002886064.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331904|gb|EFH62323.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/395 (71%), Positives = 327/395 (82%), Gaps = 7/395 (1%)

Query: 1   MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
           MGF+ S +SS+  KWLGFVTAVWVQAISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1   MGFQRSISSSSALKWLGFVTAVWVQAISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query: 60  IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
           +GKAFG+LAGLASDR+P P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61  VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120

Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
           NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180

Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
           ++PF VCL A+FFLRE +PAS+  EE EE +YF+I N VA+VVA+YLQ YD +  K+   
Sbjct: 181 VIPFAVCLTAVFFLREISPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240

Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVA 299
           ++ F+ IL+ LLASP+AIP +SFIKS N      E D  E ++ EPLL  E    E  V 
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLN----HGEQDDLEGRIQEPLLRSEIAAAEREVV 296

Query: 300 VEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
           V   V A   V+  K++PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VVAAVAAEQEVK--KKKPVLGEDHTIMEAILTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 354

Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K
Sbjct: 355 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227274|ref|NP_179257.1| putative nodulin protein [Arabidopsis thaliana] gi|4581109|gb|AAD24599.1| nodulin-like protein [Arabidopsis thaliana] gi|17979283|gb|AAL49867.1| putative nodulin protein [Arabidopsis thaliana] gi|20465250|gb|AAM19945.1| At2g16660/T24I21.7 [Arabidopsis thaliana] gi|23463081|gb|AAN33210.1| At2g16660/T24I21.7 [Arabidopsis thaliana] gi|330251429|gb|AEC06523.1| putative nodulin protein [Arabidopsis thaliana]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/395 (71%), Positives = 327/395 (82%), Gaps = 6/395 (1%)

Query: 1   MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
           MGF+ S +SS+  KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1   MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query: 60  IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
           +GKAFG+LAGLASDR+P P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61  VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120

Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
           NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180

Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
           +VPF VCL A+FFLRE  PAS+  EE EE +YF+I N VA+VVA+YLQ YD +  K+   
Sbjct: 181 VVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240

Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVA 299
           ++ F+ IL+ LLASP+AIP +SFIKS N      E D  E ++ EPLL  E    E+ V 
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLNYG----EQDDLEGRIQEPLLRSEIAAAEKEVI 296

Query: 300 VEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
           V    VA    E+ +++PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VV-AAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 355

Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K
Sbjct: 356 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074484|gb|ACJ85602.1| unknown [Medicago truncatula] gi|388498440|gb|AFK37286.1| unknown [Medicago truncatula]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/388 (70%), Positives = 315/388 (81%), Gaps = 6/388 (1%)

Query: 9   SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLA 68
           S+A KW GFV AVW+QAISGNNYTFSNYSDALK+LM+LTQL+LNNLSV KD+GKAFGLLA
Sbjct: 11  STATKWFGFVAAVWIQAISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGKAFGLLA 70

Query: 69  GLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA 128
           GLASDR+P   ILLIGS EGL+GYG QWLVV + IQPL YWQMCVFLCMGGNSTTWMNTA
Sbjct: 71  GLASDRLPTWAILLIGSFEGLIGYGVQWLVVGQYIQPLPYWQMCVFLCMGGNSTTWMNTA 130

Query: 129 VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188
           VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFT+LCSAL ADDPA FL  LA++PF+VCL 
Sbjct: 131 VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTNLCSALVADDPAFFLLTLALIPFIVCLT 190

Query: 189 AIFFLRETTPA--STVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246
            +FFLRE   A  +T  E+ EE+KYF I N VA+V+A+YL  Y F+PN +  ++ +F  +
Sbjct: 191 GVFFLREVPVAKTTTAAEDSEESKYFGICNAVAVVLAVYLLAYGFVPNANTLVSRVFVAV 250

Query: 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVA 306
           L++LLASP+ IPVY++ K    N  R   DVE Q+V EPLL     G+E    V D +VA
Sbjct: 251 LLVLLASPLGIPVYAYFK--GRNSGRDGGDVEGQRVREPLLQNGEKGSE--TTVTDALVA 306

Query: 307 VVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD 366
              V  +K +P +GE+HTI E M ++DFWILFVSFLCGVGTGLAVMNNMGQIGLALGY D
Sbjct: 307 ETEVVVIKGQPAIGEEHTIMEVMKSLDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYTD 366

Query: 367 VSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           VS+FVSLTSIWGFFGRI+SGSVSE+FIK
Sbjct: 367 VSLFVSLTSIWGFFGRIVSGSVSEHFIK 394

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489670|ref|XP_004158381.1| PREDICTED: uncharacterized LOC101216743 [Cucumis sativus]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/384 (67%), Positives = 314/384 (81%), Gaps = 15/384 (3%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFV+AVWVQAISGNNYTFSNYSDALK+LMNLTQL+LNNLSV KD+GKAFGLLAG+AS
Sbjct: 14  KWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGIAS 73

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           D+ P  +ILLIGS+EGLVGYG QWLVVSR+I PL YWQMC+FLCMGGNSTTWMNTAVLVT
Sbjct: 74  DKFPTWVILLIGSVEGLVGYGTQWLVVSRRISPLPYWQMCIFLCMGGNSTTWMNTAVLVT 133

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFR+NRGPVSGILKGYVGLSTAIFTDLC ALF+ DP+ FL ML++VP  VCL A+FF
Sbjct: 134 CIRNFRKNRGPVSGILKGYVGLSTAIFTDLCFALFSSDPSSFLLMLSLVPLAVCLFAMFF 193

Query: 193 LRETTPASTVD--EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL 250
           LRE    +T+   + ++E+ YFS+ N +A+VVA+YL  +DF+ N    ++ ++S  L+IL
Sbjct: 194 LREIPTQTTITAADTQQESNYFSVFNALAVVVAVYLLCFDFVKNSGRLISQLYSIGLLIL 253

Query: 251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV 310
           L SP+ IP+YSF KSWN  R R   D+EE  V E ++ G         AV++       +
Sbjct: 254 LGSPLIIPIYSFFKSWNSIRSRL--DLEEPLVKEEVVTG---------AVKEEAGETAVI 302

Query: 311 EEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIF 370
           E+  R PV+GE+HTIFEA+ T+DFW+LFVSFLCGVGTGLAVMNNMGQIGLALGY DVS+F
Sbjct: 303 EQ--RAPVIGEEHTIFEAVRTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMF 360

Query: 371 VSLTSIWGFFGRIISGSVSEYFIK 394
           VSLTSIWGFFGRI+SG++SE+F+K
Sbjct: 361 VSLTSIWGFFGRILSGTISEHFLK 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.977	0.712	0.691	2.8e-144
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.989	0.694	0.654	2.7e-139
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.613	0.417	0.374	6.1e-64
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.650	0.447	0.337	8.8e-61
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.655	0.483	0.344	3.3e-59
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.655	0.483	0.344	3.3e-59
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.635	0.438	0.330	1.8e-58
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.630	0.417	0.352	6.5e-58
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.964	0.684	0.332	5.3e-56
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.608	0.460	0.320	1.7e-49

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
 Identities = 273/395 (69%), Positives = 313/395 (79%)

Query:     1 MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
             MGF+ S +SS+  KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct:     1 MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query:    60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
             +GKAFG+LAGLASDR+P P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct:    61 VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120

Query:   120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
             NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct:   121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180

Query:   180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
             +VPF VCL A+FFLRE  PAS+  EE EE +YF+I N VA+VVA+YLQ YD +  K+   
Sbjct:   181 VVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240

Query:   240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDXXXXXXXXPLLNGXXXXXXXXXX 299
             ++ F+ IL+ LLASP+AIP +SFIKS N      E D        PLL            
Sbjct:   241 SVAFASILLFLLASPIAIPFHSFIKSLNYG----EQDDLEGRIQEPLLRSEIAAAEKEVI 296

Query:   300 XXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
                           K+ PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct:   297 VVAAVAAEEEEKKRKK-PVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 355

Query:   360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
             LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K
Sbjct:   356 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK 390

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
 Identities = 269/411 (65%), Positives = 316/411 (76%)

Query:     1 MGFEVSYTSSAG---KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVV 57
             MGF  S +SS+    KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV 
Sbjct:     1 MGFGTSSSSSSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVA 60

Query:    58 KDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM 117
             KD+GKAFG+LAGLASDR+  P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCM
Sbjct:    61 KDVGKAFGILAGLASDRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCM 120

Query:   118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM 177
             GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +
Sbjct:   121 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVL 180

Query:   178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSE 237
             L++VPF VCL A+FFLRE  P++T  E+ EE+KYF++ N VA+VVA+YLQ YD +  K+ 
Sbjct:   181 LSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTG 240

Query:   238 TLALIFSGILIILLASPVAIPVYSFIKS-----WNLNRKRTEP--DXXXXXXXXPLLNGX 290
               ++ F+ IL+ILLASPVA+P ++FI+S      ++  +  EP             + G 
Sbjct:   241 AFSIAFASILLILLASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGA 300

Query:   291 XXXXXXXX-------XXXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLC 343
                                           K+RPVLGE+HTI EAM TVDFW+LFVSFLC
Sbjct:   301 AAAADNELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLC 360

Query:   344 GVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
             GVGTGLAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct:   361 GVGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 94/251 (37%), Positives = 152/251 (60%)

Query:    13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
             +WL FV A+W+Q+ +G  Y F + S  +K+ +N  Q +L+ L V KD+G + G LAG  S
Sbjct:    16 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAGTLS 75

Query:    73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
             + +P    LL+GS++ LVGYG  WL+V+ +   L  W MC+ + +G N  T+ NTA LV+
Sbjct:    76 EILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAALVS 135

Query:   133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
              ++NF ++RGPV GILKG+ GL  AI + + + + + D A  +FM+A+ P VV +  +FF
Sbjct:   136 GVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFF 195

Query:   193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ----VYDFLPNKSETLALIFSGILI 248
             +R       +     +A  F++I  V I++A YL     V DF+ + S ++ + F+ +L 
Sbjct:   196 IRPVGGHRQI--RSSDATSFTVIYAVCILLAAYLMAVMLVEDFI-DLSHSIIIAFTVVLF 252

Query:   249 ILLASPVAIPV 259
              +L  P+ IP+
Sbjct:   253 AILLVPIFIPI 263

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 90/267 (33%), Positives = 154/267 (57%)

Query:     5 VSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF 64
             VS+ ++  +WL FV A+W+Q+ +G  Y F + S  +K+ +N  Q EL+ L V KD+G + 
Sbjct:    10 VSFINN--RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSV 67

Query:    65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTW 124
             G +AG  S+ +P    LL+G+++ L+GYG  WL+V+ +   L  W MCV + +G N  T+
Sbjct:    68 GFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETY 127

Query:   125 MNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184
              NT  LV+ ++NF ++RGPV GILKG+ GL  AI + + + + + +PA  + M+A+ P V
Sbjct:   128 FNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAV 187

Query:   185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLAL 241
             V +  +FF+R       +     +   F+ I  V +++A YL     + +    S  +  
Sbjct:   188 VVVCLMFFIRPVGGHKQI--RPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245

Query:   242 IFSGILIILLASPVAIPVY-SFIKSWN 267
             +F+ +L ++L  P+ +P+  SF    N
Sbjct:   246 VFTIVLFVILVVPILVPIMTSFFTETN 272

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 92/267 (34%), Positives = 150/267 (56%)

Query:    13 KWLGFVTAVWVQAISGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             +WL FV A+WVQ+++G  Y F  + S A+KT +   Q ++  L V K++G A G ++G  
Sbjct:    16 RWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGAL 75

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             S+  P+ ++LL+G+ + L GYG  WLVV+ ++  L  W + V + +G N  T+ NTA LV
Sbjct:    76 SEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLV 135

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             +CI NF  +RGPV GILKG+ GLS AI T +         +  + M+A+ P VV L  +F
Sbjct:   136 SCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLF 195

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ---VYDFLPNKSETLALIFSGILI 248
              +R    +   +   ++ ++ +I     +V+A+YL    V   + + ++T+      IL+
Sbjct:   196 IVRPVERSCRTNLRSDDLRFLAIYG-FCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILV 254

Query:   249 ILLASPVAIPVYS-FIKSWNLNRKRTE 274
             I +  PV +P  S FI   N+   + E
Sbjct:   255 IFMVVPVLVPFSSVFISGNNVTSVKPE 281

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 92/267 (34%), Positives = 150/267 (56%)

Query:    13 KWLGFVTAVWVQAISGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             +WL FV A+WVQ+++G  Y F  + S A+KT +   Q ++  L V K++G A G ++G  
Sbjct:    16 RWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGAL 75

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             S+  P+ ++LL+G+ + L GYG  WLVV+ ++  L  W + V + +G N  T+ NTA LV
Sbjct:    76 SEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLV 135

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             +CI NF  +RGPV GILKG+ GLS AI T +         +  + M+A+ P VV L  +F
Sbjct:   136 SCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLF 195

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ---VYDFLPNKSETLALIFSGILI 248
              +R    +   +   ++ ++ +I     +V+A+YL    V   + + ++T+      IL+
Sbjct:   196 IVRPVERSCRTNLRSDDLRFLAIYG-FCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILV 254

Query:   249 ILLASPVAIPVYS-FIKSWNLNRKRTE 274
             I +  PV +P  S FI   N+   + E
Sbjct:   255 IFMVVPVLVPFSSVFISGNNVTSVKPE 281

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 86/260 (33%), Positives = 138/260 (53%)

Query:    12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             G+W     +  + A +G  Y F  YS  +K+ +   Q  LN L   KD+G   G+L+GL 
Sbjct:    16 GRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLI 75

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             ++  P   +L IGS    VGY   WL V+ K+     WQMC+++C+G NS  + NT  LV
Sbjct:    76 AEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALV 135

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             TC++NF  +RG + G+LKGYVGLS AIFT L  A++  D    + ++A +P  V L  ++
Sbjct:   136 TCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVY 195

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIFSGILI 248
              +RE      V +  E + ++  +  ++I +AL+L   +    +   S+      + I  
Sbjct:   196 LIREK---KVVRQRNELSVFYQFLY-ISIFLALFLMAMNIAEKQVHFSKAAYAASATICC 251

Query:   249 ILLASPVAIPVYSFIKSWNL 268
              LL  P+ + V   ++ WN+
Sbjct:   252 ALLFVPLTVSVKQELEVWNM 271

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 6.5e-58, Sum P(2) = 6.5e-58
 Identities = 91/258 (35%), Positives = 136/258 (52%)

Query:    12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             G+W  F  ++ + + +G  Y F  YS  +K  +   Q  LN LS  KD+G   G+LAGL 
Sbjct:    20 GRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLL 79

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             ++  P   ILLIG++    GY   WL V+ +I     W MC+++C+G NS ++ NT  LV
Sbjct:    80 NEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGANSQSFANTGSLV 139

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             TC++NF  +RG V GILKGYVGLS AI T L  A + +D  + + M+  +P +V      
Sbjct:   140 TCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGWLPAIVSFA--- 196

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG---ILI 248
             FLR T     V  +  E K F     +++ +A +L V   +   S      F G   ++I
Sbjct:   197 FLR-TIRIMKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFGGSAAVVI 255

Query:   249 ILLASPVAIPVYSFIKSW 266
             +LL  P+ + +    K W
Sbjct:   256 VLLLLPIIVVILEEKKLW 273

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 134/403 (33%), Positives = 207/403 (51%)

Query:     8 TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLL 67
             + S   W+G   A WVQ  +G+  TF  YS ALK+++  +Q ++  L V  D+G+  GLL
Sbjct:     8 SGSRPPWVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGLL 67

Query:    68 AGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127
              G AS+++P   +LLIG+    +G+G  WL VS+ +  L +W + V L +  NS +W  T
Sbjct:    68 PGYASNKLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFGT 127

Query:   128 AVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI-VPFVVC 186
             A LVT +RNF  +RGPV+G+LKGY+G+S A FT L S +        L  L + +P V+C
Sbjct:   128 ASLVTNMRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIP-VIC 186

Query:   187 LGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIF 243
             L  ++F+R   PA+   E+  E  YF+ +   +I+ A YL V   L         L  + 
Sbjct:   187 LTVMYFIRPCIPAT--GEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVL 244

Query:   244 SGILIILLASPVAIPVYSFI-----------KSWNLNRKRTEPDXXXXXXXXPLLN-GXX 291
               I+++LL SP+A+P+   +            S NL ++    +           N G  
Sbjct:   245 VAIMVLLLLSPLAVPIKMTLFRSNAKSSPLGSSDNLAKEEGTHEEPLLTPSTSASNLGPI 304

Query:   292 XXXXXXXXXXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAV 351
                                   KR+P  GED    +     DFW+L+  +  G+G+G+ V
Sbjct:   305 FEGDDESDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTV 364

Query:   352 MNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
              NN+ QIG A G  D +I + L S + F GR+ SG++SE+F++
Sbjct:   365 SNNLAQIGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVR 407

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
 Identities = 84/262 (32%), Positives = 140/262 (53%)

Query:    13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGL-- 70
             KW+    ++W+Q+ SG +YTF  YS  LK+  +  Q  L+ +SV KDIG   G+L+GL  
Sbjct:     7 KWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGILSGLFY 66

Query:    71 ---ASDR------IPAP-IILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120
                AS +         P +++ +G L+  VGYG  W+  S  I       MC+F+   G+
Sbjct:    67 TAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLFMFFAGH 126

Query:   121 STTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI 180
                + NTA++VT +RNF    G   GI+KGY+GLS AI   +       DP  ++ +LA+
Sbjct:   127 CQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNYILLLAV 186

Query:   181 VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPN---KSE 237
             VP ++ L  + F+R  T  + +  +K   K+ + ++ +++++  YL V   + N    S 
Sbjct:   187 VPSLLILTLMPFVR--TYDTVIAGDK---KHLNGLSAISLIIVTYLMVVILVENIIGMSM 241

Query:   238 TLALIFSGILIILLASPVAIPV 259
              + +     L++LLASP+ + V
Sbjct:   242 PMKICSFTFLLLLLASPLLVAV 263

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	3e-96
PTZ00207	591	PTZ00207, PTZ00207, hypothetical protein; Provisio	5e-10
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-05

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  287 bits (737), Expect = 3e-96
 Identities = 111/250 (44%), Positives = 161/250 (64%), Gaps = 5/250 (2%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           +WLG V A+W+Q+ +G NY FS YS ALK+ +  +Q++LN L V KD+GK FG L+GLA+
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           + +P  ++LL+G+  G VGYG QWL V+ KI  L YW +C+ +C+ GNS  W NTA LVT
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNF  +RG V GILKGY GLS AI+T L +A+F +D +  L + A+VP VV L A++F
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIFSGILII 249
           +R         E++ E+  F + N +++ +A+YL     L      S         I+++
Sbjct: 181 IRPCPGKVG--EQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVL 238

Query: 250 LLASPVAIPV 259
           LL  P+A+P+
Sbjct: 239 LLLVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 92/369 (24%), Positives = 149/369 (40%), Gaps = 66/369 (17%)

Query: 31  YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-PAPI------ILLI 83
           Y F+  S A++   NLTQ +L+ ++ V      F L      D + P PI      +  +
Sbjct: 44  YAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL 103

Query: 84  GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGP 143
           G+L  L     Q ++    ++   Y  +    CM        +   +VT +  F  NRG 
Sbjct: 104 GTL--LFALTFQEVIEGSVVRLSVYNGLMTLGCM------LFDLGAVVTVLSVFPSNRGA 155

Query: 144 VSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPAST-- 201
           V  I+K + GL +AI   +  A F+D+ + + F L     VV + AI F+R      T  
Sbjct: 156 VVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGY 215

Query: 202 ----VDEE-------------KEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244
               +DEE             K++A  +  +    I++ L +    FLP +   +A +  
Sbjct: 216 QEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV----FLPLQGALVAYLKL 271

Query: 245 G-----------ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTG 293
           G           I++ ++   +A P+ +F    +  R   + D + ++ VE         
Sbjct: 272 GSNFKVGFAVTVIVLTVIFPFMAFPLTTF----DGKRPHDDSDGKAKEHVE--------A 319

Query: 294 TEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMN 353
            EEV A ED VV    V+ +   P   E  T  E + T   W L  S  C VG    ++ 
Sbjct: 320 GEEVSAAEDKVVE-TDVDYIA--PQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIF 374

Query: 354 NMGQIGLAL 362
           N   I  AL
Sbjct: 375 NARFIYTAL 383

Length = 591

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 311 EEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--S 368
                  V  +D+T++E + T  FW+L++SF     +GL ++      G +LG  D    
Sbjct: 184 LIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLV 243

Query: 369 IFVSLTSIWGFFGRIISGSVSEY 391
           + VS++SI+   GR   G++S+ 
Sbjct: 244 LAVSISSIFNGGGRPFLGALSDK 266

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
PTZ00207	591	hypothetical protein; Provisional	100.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.87
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
PRK12307	426	putative sialic acid transporter; Provisional	99.87
TIGR00891	405	2A0112 putative sialic acid transporter.	99.86
PRK03545	390	putative arabinose transporter; Provisional	99.86
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.86
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.86
TIGR00893	399	2A0114 d-galactonate transporter.	99.85
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.85
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.85
TIGR00895	398	2A0115 benzoate transport.	99.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.84
PRK03699	394	putative transporter; Provisional	99.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.83
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.83
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.82
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.82
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.82
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.82
TIGR00898	505	2A0119 cation transport protein.	99.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.81
PRK10642	490	proline/glycine betaine transporter; Provisional	99.81
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.8
PRK10504	471	putative transporter; Provisional	99.8
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.79
PRK10091	382	MFS transport protein AraJ; Provisional	99.79
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.79
KOG0569	485	consensus Permease of the major facilitator superf	99.78
PRK11043	401	putative transporter; Provisional	99.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.78
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.77
PRK03893	496	putative sialic acid transporter; Provisional	99.77
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.77
PRK10133	438	L-fucose transporter; Provisional	99.77
TIGR00900	365	2A0121 H+ Antiporter protein.	99.77
PRK15075	434	citrate-proton symporter; Provisional	99.76
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.75
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.75
PRK09952	438	shikimate transporter; Provisional	99.75
PRK03633	381	putative MFS family transporter protein; Provision	99.74
KOG2532	466	consensus Permease of the major facilitator superf	99.74
PRK12382	392	putative transporter; Provisional	99.74
PRK05122	399	major facilitator superfamily transporter; Provisi	99.73
TIGR00901	356	2A0125 AmpG-related permease.	99.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.68
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.68
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.68
PRK10054	395	putative transporter; Provisional	99.67
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.67
KOG0254	513	consensus Predicted transporter (major facilitator	99.67
TIGR00805	633	oat sodium-independent organic anion transporter.	99.65
PRK10489	417	enterobactin exporter EntS; Provisional	99.65
PRK09874	408	drug efflux system protein MdtG; Provisional	99.65
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.65
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.65
PRK11010	491	ampG muropeptide transporter; Validated	99.63
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.62
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.61
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.6
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.6
PRK11902	402	ampG muropeptide transporter; Reviewed	99.59
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.59
KOG2533	495	consensus Permease of the major facilitator superf	99.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.56
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.54
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.53
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.53
KOG2563	480	consensus Permease of the major facilitator superf	99.53
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.5
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.43
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.4
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.39
PRK10642	490	proline/glycine betaine transporter; Provisional	99.36
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.35
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.34
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.32
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.31
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.28
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.25
PRK15011	393	sugar efflux transporter B; Provisional	99.24
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.14
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.13
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.1
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.08
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.08
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.07
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.06
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.06
PRK09528	420	lacY galactoside permease; Reviewed	99.05
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.02
PRK05122	399	major facilitator superfamily transporter; Provisi	99.01
PRK09669	444	putative symporter YagG; Provisional	99.01
PF13347	428	MFS_2: MFS/sugar transport protein	98.99
PRK10489	417	enterobactin exporter EntS; Provisional	98.97
PRK03545	390	putative arabinose transporter; Provisional	98.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.96
PRK03699	394	putative transporter; Provisional	98.95
KOG2615	451	consensus Permease of the major facilitator superf	98.95
PRK09952	438	shikimate transporter; Provisional	98.94
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.94
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.88
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.87
PRK10504	471	putative transporter; Provisional	98.86
PRK11010	491	ampG muropeptide transporter; Validated	98.85
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.85
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.84
PRK12382	392	putative transporter; Provisional	98.83
PRK12307	426	putative sialic acid transporter; Provisional	98.83
PRK09874	408	drug efflux system protein MdtG; Provisional	98.82
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.82
PRK09705	393	cynX putative cyanate transporter; Provisional	98.81
PRK10429	473	melibiose:sodium symporter; Provisional	98.81
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.8
PRK03633	381	putative MFS family transporter protein; Provision	98.8
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.8
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.78
PRK03893	496	putative sialic acid transporter; Provisional	98.77
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.76
PLN00028	476	nitrate transmembrane transporter; Provisional	98.75
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
TIGR00891	405	2A0112 putative sialic acid transporter.	98.73
PRK15075	434	citrate-proton symporter; Provisional	98.73
TIGR00900	365	2A0121 H+ Antiporter protein.	98.72
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.72
PRK09848	448	glucuronide transporter; Provisional	98.72
TIGR00895	398	2A0115 benzoate transport.	98.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.71
TIGR00893	399	2A0114 d-galactonate transporter.	98.7
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.7
PRK10091	382	MFS transport protein AraJ; Provisional	98.7
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.66
PRK11043	401	putative transporter; Provisional	98.66
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.65
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.65
KOG0569	485	consensus Permease of the major facilitator superf	98.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.62
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.61
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.61
PRK11663	434	regulatory protein UhpC; Provisional	98.58
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.57
PRK11462	460	putative transporter; Provisional	98.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.54
PRK10054	395	putative transporter; Provisional	98.53
PRK11902	402	ampG muropeptide transporter; Reviewed	98.52
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.48
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.48
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.48
TIGR00901	356	2A0125 AmpG-related permease.	98.48
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.47
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.46
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.46
PRK10133	438	L-fucose transporter; Provisional	98.46
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.46
TIGR00898	505	2A0119 cation transport protein.	98.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.45
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.44
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.42
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.39
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.39
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.31
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.31
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.3
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.28
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.28
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.27
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.27
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.26
PRK09848	448	glucuronide transporter; Provisional	98.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.22
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.14
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.1
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.09
PF13347	428	MFS_2: MFS/sugar transport protein	98.08
KOG0254	513	consensus Predicted transporter (major facilitator	98.06
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.04
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.94
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.94
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.9
COG2211	467	MelB Na+/melibiose symporter and related transport	97.86
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.86
PRK09669	444	putative symporter YagG; Provisional	97.85
PRK10429	473	melibiose:sodium symporter; Provisional	97.78
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.73
COG0477	338	ProP Permeases of the major facilitator superfamil	97.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.62
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.61
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.56
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.49
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.48
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.44
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.37
PRK11462	460	putative transporter; Provisional	97.31
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.26
COG2211	467	MelB Na+/melibiose symporter and related transport	97.25
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.16
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.09
KOG2532	466	consensus Permease of the major facilitator superf	97.08
KOG2533	495	consensus Permease of the major facilitator superf	97.07
KOG3762	618	consensus Predicted transporter [General function	96.94
KOG3626	735	consensus Organic anion transporter [Secondary met	96.91
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.81
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.72
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.68
PF12832	77	MFS_1_like: MFS_1 like family	96.61
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.52
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.3
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.24
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.16
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.04
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.89
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.52
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.39
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.33
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.01
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.99
PTZ00207	591	hypothetical protein; Provisional	92.96
PRK03612	521	spermidine synthase; Provisional	92.92
KOG2615	451	consensus Permease of the major facilitator superf	92.74
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.73
PF12832	77	MFS_1_like: MFS_1 like family	91.48
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.85
TIGR00805	633	oat sodium-independent organic anion transporter.	90.84
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.03
KOG0637	498	consensus Sucrose transporter and related proteins	89.83
KOG2563	480	consensus Permease of the major facilitator superf	87.38
KOG3762	618	consensus Predicted transporter [General function	84.69
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	84.54
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	83.09

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-43  Score=358.08  Aligned_cols=367  Identities=22%  Similarity=0.281  Sum_probs=283.8

Q ss_pred             CCCCcHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhcccCchHHHHHHHHHH
Q 015916            9 SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      ...+||..++++++++.+.|..|.|+++.+++++++|+|++|++++...+...+.+++++|++.||+|+|+++.+|.+++
T Consensus        22 ~e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999976654444455778999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++|++++++++.+.+. .+++++++++++.|+|.+..++++..++.+|||++||+++|+..++.++|+++++++...++.
T Consensus       102 ~iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987544332 468999999999999999888889999999999999999999999999999999999998887


Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCC--c--hhhhhh-----------------hhHHHHHHHHHHHHHHHH
Q 015916          169 DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV--D--EEKEEA-----------------KYFSIINTVAIVVALYLQ  227 (398)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~--~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~  227 (398)
                      ++.+.+++++++++.++++++.+++|++|+....  +  .++++.                 +++.+.+..++++++|++
T Consensus       181 ~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~  260 (591)
T PTZ00207        181 DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLP  260 (591)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHH
Confidence            7677889999999999999999999988854321  0  012222                 277788888899999999


Q ss_pred             HHhhccCCccch---hHHHHHHHH-HHHHhh-hhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhc
Q 015916          228 VYDFLPNKSETL---ALIFSGILI-ILLASP-VAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVED  302 (398)
Q Consensus       228 ~~~~~~~~~~~~---~~~~~~~~~-~~l~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  302 (398)
                      ++++++++++++   +..+.++++ +++..| +++|++. +++++++   +++|.|+++..++  +++.       .+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~---~~~~~~~~~~~~~--~~~~-------~~~~  327 (591)
T PTZ00207        261 LQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPH---DDSDGKAKEHVEA--GEEV-------SAAE  327 (591)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcC---CCccccccccccc--cccc-------cccc
Confidence            999999988875   566666665 677888 7888754 2222111   1111111000000  0000       0000


Q ss_pred             ch--hhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh-CC-Cch--hH-HHHHHH
Q 015916          303 TV--VAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GY-VDV--SI-FVSLTS  375 (398)
Q Consensus       303 ~~--~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~-g~-~~~--a~-~vsl~s  375 (398)
                      .+  +++  ++  ...|+.++  |.+|.+++.|||++|++++|+.|.+++++||++||.+++ |+ ++.  +. +++++|
T Consensus       328 ~~~~~~~--~~--~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~s  401 (591)
T PTZ00207        328 DKVVETD--VD--YIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNG  401 (591)
T ss_pred             ccccccc--cc--CCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhh
Confidence            00  000  10  12244443  999999999999999999999999999999999999999 87 333  33 899999


Q ss_pred             HHHHHhhhhhhhhhHHHHhH
Q 015916          376 IWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       376 i~~~~GRl~~G~lsD~~~~~  395 (398)
                      ++|++||++.|+++....+|
T Consensus       402 i~~~~GRl~~g~~~~~~~~~  421 (591)
T PTZ00207        402 VGSAVGRLCMSYFEIWSQKR  421 (591)
T ss_pred             HHHHhhHHHHHHHHHHHHhh
Confidence            99999999999998444433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=100.00  E-value=3.2e-35  Score=269.35  Aligned_cols=246  Identities=50%  Similarity=0.906  Sum_probs=229.1

Q ss_pred             cHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGY   92 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~   92 (398)
                      ||..++++++++.++|+.|.|+.|+|++|+.+|+|++|++.++++.++|..++++.|.+.||+|||.++.+|.+...+||
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChh
Q 015916           93 GAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPA  172 (398)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~  172 (398)
                      ..++.++.+.+++.++|+++++.++.|.|.+..++++..++.++||++||++.|+.++.+||++++++.++..+++++..
T Consensus        81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~  160 (250)
T PF06813_consen   81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS  160 (250)
T ss_pred             HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence            99999999887656799999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccch---hHHHHHHHHH
Q 015916          173 KFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL---ALIFSGILII  249 (398)
Q Consensus       173 ~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  249 (398)
                      .|++++++.|.++++++.+++|+.|+.....++++|++++...+...++++.|++...+.+++.+.+   +.....++++
T Consensus       161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l  240 (250)
T PF06813_consen  161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL  240 (250)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998765545556788888888888999999999999999999887   5667777778


Q ss_pred             HHHhhhhhc
Q 015916          250 LLASPVAIP  258 (398)
Q Consensus       250 ~l~~p~~~~  258 (398)
                      ++.+|+++|
T Consensus       241 lL~~Pl~i~  249 (250)
T PF06813_consen  241 LLLLPLAIP  249 (250)
T ss_pred             HHHhhhhcc
Confidence            889999877

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=1.5e-24  Score=210.90  Aligned_cols=269  Identities=22%  Similarity=0.284  Sum_probs=197.8

Q ss_pred             CcHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      |+|+.+.+.+......+..|.++.+.|++++++|+|..+.+++.+...++... .++.|++.||+|||+++.++.++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            45676776666677777788999999999999999999999987777788765 79999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCC
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD  170 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~  170 (398)
                      +.+.+.+.       ++++.+++.|++.|++.+..+......+.+|+|++||++.++...+.++|..+.+++...+.+. 
T Consensus        81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-  152 (377)
T TIGR00890        81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINL-  152 (377)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhc-
Confidence            99887765       5788888899999999988877778889999999999999999999999998888777665432 


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHH
Q 015916          171 PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL  250 (398)
Q Consensus       171 ~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
                                                           .+||..+...+.+.+.                           
T Consensus       153 -------------------------------------~~~~~~f~~~~~~~~~---------------------------  168 (377)
T TIGR00890       153 -------------------------------------EGVPAAFIYMGIIFLL---------------------------  168 (377)
T ss_pred             -------------------------------------ccHHHHHHHHHHHHHH---------------------------
Confidence                                                 3455433222110000                           


Q ss_pred             HHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhc
Q 015916          251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMW  330 (398)
Q Consensus       251 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~  330 (398)
                      ...+....    ++     +++.+       +.++   +               ++       .    ..++.+.++.+|
T Consensus       169 ~~~~~~~~----~~-----~~~~~-------~~~~---~---------------~~-------~----~~~~~~~~~~~~  203 (377)
T TIGR00890       169 VIVLGAFL----IG-----YPPGQ-------LIKT---N---------------IE-------V----SVKDYTVWEMLR  203 (377)
T ss_pred             HHHHHHHh----ee-----cCchh-------cccc---C---------------cc-------c----chhhhhHHHHHc
Confidence            00000000    11     01000       0000   0               00       0    001234578899


Q ss_pred             cHhHHHHHHHHHhcccceeeeeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHhc
Q 015916          331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMVH  397 (398)
Q Consensus       331 t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~~  397 (398)
                      ++++|.+.+.+++.........+..+++.++.|.++  .....++.++.+.+++++.|+++||++||+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  272 (377)
T TIGR00890       204 TPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT  272 (377)
T ss_pred             CccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999988877766665556666777888888764  4568889999999999999999999999864

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.7e-24  Score=217.65  Aligned_cols=314  Identities=18%  Similarity=0.142  Sum_probs=227.3

Q ss_pred             CCCcHHHHHHHHHHHH-HhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHHHH
Q 015916           10 SAGKWLGFVTAVWVQA-ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLE   87 (398)
Q Consensus        10 ~~~~w~~l~~~~~~~~-~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~   87 (398)
                      .-..|.+++++++.+. ..|..++++++.+.++++++-+.++++|+.+...... ..+|+.+.+.||||.|.++++|.++
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            3457999999999864 6788999999999999999999999999655544444 4589999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCchHHHHHH-HHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916           88 GLVGYGAQWLVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus        88 ~~ig~~~~~~~~~~~~~~~~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      .++|+++.+++       +++|++++ ++++.|+|.|+.|.++...+..||+|||++|.|+..++.|+|..+++++...+
T Consensus       121 ~~~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l  193 (509)
T KOG2504|consen  121 AALGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYL  193 (509)
T ss_pred             HHHHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence            99999999987       67888886 79999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          167 FADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      ++.-+|++.+++-....+.++.+...+|+.+....+.++++.+...                 ...++.           
T Consensus       194 ~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------  245 (509)
T KOG2504|consen  194 LSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSA-----------------ASVEST-----------  245 (509)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcccc-----------------cccccc-----------
Confidence            9876676666555555677777777777655443321111111100                 000000           


Q ss_pred             HHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCC-CcCCcc--
Q 015916          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRP-VLGEDH--  323 (398)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--  323 (398)
                                      -. ...+...      +  ..++........ .+.. +    +++   +  +... ..+...  
T Consensus       246 ----------------~~-~~~~~~~------~--~~~~~~~~~~~~-~~~~-~----~~~---~--~~~~~~~~~~~~~  289 (509)
T KOG2504|consen  246 ----------------PK-PVELRIS------E--RDSGLKKLSLSN-LATL-K----RGP---D--KWRNSPLQAFLSM  289 (509)
T ss_pred             ----------------cc-ccccccc------c--CCCCCCcccccc-hhhh-h----hCC---c--cccccchhhhhhh
Confidence                            00 0000000      0  000000000000 0000 0    000   0  0000 011111  


Q ss_pred             hHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHhCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 015916          324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (398)
Q Consensus       324 t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~  394 (398)
                      --++++|++.|+.+.+...+...........++.+.++.|++  +++.++++.++.+.+||++.|++.|+...
T Consensus       290 ~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~  362 (509)
T KOG2504|consen  290 LDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI  362 (509)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc
Confidence            126899999999999999999888888889999999999997  48899999999999999999999999873

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=7.2e-23  Score=203.88  Aligned_cols=292  Identities=13%  Similarity=0.072  Sum_probs=205.5

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      +.+|......++...+... ....+...|.+++++|++..+.+++.+...++..+ +++.|++.||+|||+++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            4467766666665544333 45667778889999999999999987777777755 799999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .++.++.+++       ++++.+++.|++.|++.+..++.....+.+|||+ +||+++|+...+.++|..+.+.+...+.
T Consensus        84 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        84 GIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988764       5688888999999999998777777788999995 6999999999999999999888877765


Q ss_pred             C------CChhHHHHHHHHHHH-HHHHhhhhcccccCCCCCC-chhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccch
Q 015916          168 A------DDPAKFLFMLAIVPF-VVCLGAIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL  239 (398)
Q Consensus       168 ~------~~~~~~~~~~~~~~~-~i~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (398)
                      +      ...|++.+.+..++. +..++..+++||+|++... ++  ++......                         
T Consensus       157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~--~~~~~~~~-------------------------  209 (412)
T TIGR02332       157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE--EDKKALKE-------------------------  209 (412)
T ss_pred             hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH--HHHHHHHH-------------------------
Confidence            3      236777777755554 4445555677888764321 00  00000000                         


Q ss_pred             hHHHHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCc
Q 015916          240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVL  319 (398)
Q Consensus       240 ~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  319 (398)
                                            ..+++   .. +        .+++   ++              +.+      + .+ .
T Consensus       210 ----------------------~~~~~---~~-~--------~~~~---~~--------------~~~------~-~~-~  230 (412)
T TIGR02332       210 ----------------------MIDND---QL-T--------LEQP---EG--------------AFA------H-AA-M  230 (412)
T ss_pred             ----------------------HHHhc---cc-c--------cccc---cc--------------ccc------c-cc-c
Confidence                                  00000   00 0        0000   00              000      0 00 0


Q ss_pred             CCcchHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh--CCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          320 GEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL--GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       320 ~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~--g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      .....++ .++++.+|...+.+++.......+.+++++++++.  |.+  +++...++..+++.+|++++|+++||+++|
T Consensus       231 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       231 PQRSMLR-EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             cHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            0011223 34578999999888887777777888999999986  444  355678999999999999999999999866


Q ss_pred             h
Q 015916          396 V  396 (398)
Q Consensus       396 ~  396 (398)
                      +
T Consensus       310 ~  310 (412)
T TIGR02332       310 K  310 (412)
T ss_pred             H
Confidence            4

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.88  E-value=8.3e-22  Score=197.52  Aligned_cols=156  Identities=14%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             cHHHHHHHHHHHHHh-cccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~-g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      ||..+...++..... ...+.++.+.|.+.+++|+|..+.+++.+...++.. .+++.|++.||+|+|+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            444444444433322 234566788899999999999999997777777775 489999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      +.+++.+.       ++++.+++.|++.|++.|..+.+....+.+|||+ +||+++|+...+.++|+.+.+.+...+.+.
T Consensus       101 ~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663        101 INILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            98877664       5688888889999998888777788889999985 699999999999999999998888777654


Q ss_pred             ChhHHH
Q 015916          170 DPAKFL  175 (398)
Q Consensus       170 ~~~~~~  175 (398)
                      ..|++.
T Consensus       174 ~gw~~~  179 (434)
T PRK11663        174 YGWRYG  179 (434)
T ss_pred             ccHHHH
Confidence            334433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=9e-22  Score=199.10  Aligned_cols=272  Identities=13%  Similarity=0.042  Sum_probs=180.6

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      ...+++..|++++++|++..+.+++.+...++..+ .++.|++.||+|+|+++.++.++.+++.+.++......  ++++
T Consensus        45 r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~  122 (467)
T PRK09556         45 RKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG--SVSL  122 (467)
T ss_pred             hcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc--cchH
Confidence            45677888999999999999999987777777755 79999999999999999999888888777666532211  1468


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC---ChhHH-HHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD---DPAKF-LFMLAIVPF  183 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~---~~~~~-~~~~~~~~~  183 (398)
                      +.+++.|++.|++.+...++....+.+|||+ +||+++|+..++.++|+++.+.+.....+.   ..|+. +...++...
T Consensus       123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~  202 (467)
T PRK09556        123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL  202 (467)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence            8888999999999988878888899999985 699999999999999999887765443221   01211 111122222


Q ss_pred             HHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccc
Q 015916          184 VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI  263 (398)
Q Consensus       184 ~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~  263 (398)
                      +++++..+++++.|++..                                                              
T Consensus       203 ~~~i~~~~~~~~~p~~~~--------------------------------------------------------------  220 (467)
T PRK09556        203 IIGFIGLRYGSDSPEELG--------------------------------------------------------------  220 (467)
T ss_pred             HHHHHHHHhCCCChhhcC--------------------------------------------------------------
Confidence            222222222222221100                                                              


Q ss_pred             ccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHh
Q 015916          264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC  343 (398)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~  343 (398)
                               .. +. ++...++  .+          +   +++.  -   ++.+....+.-.++.+|++.+|.+.+..++
T Consensus       221 ---------~~-~~-~~~~~~~--~~----------~---~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  269 (467)
T PRK09556        221 ---------WG-KA-EEIFGEP--IS----------E---EDKE--T---ESTDMTKWQIFVEYVLKNPVIWLLCFANIF  269 (467)
T ss_pred             ---------CC-Ch-hhcccCc--cc----------h---hhhc--c---ccccCcHHHHHHHHHHcChHHHHHHHHHHH
Confidence                     00 00 0000000  00          0   0000  0   000000001112348899999999998887


Q ss_pred             cccceeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          344 GVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       344 ~~~~g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ......++.+.++.++++ .|++  +++...++..+++.+|++++|+++||+++|+
T Consensus       270 ~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~  325 (467)
T PRK09556        270 LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR  325 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            777666677788887755 6886  3567788899999999999999999999875

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=3.3e-21  Score=190.68  Aligned_cols=244  Identities=12%  Similarity=0.023  Sum_probs=180.8

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      .++.+...|++++++|+|..+.+++.+...++..+ +++.|++.||+|+|+++..+..+.+++.+..+++       +++
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-------~~~   97 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-------PQS   97 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-------cch
Confidence            46778899999999999999999977777777754 8999999999999999999999999999998875       578


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  188 (398)
                      +.+.+.|++.|+|.+..+......+.+|||++|++++|+..++..+|..+.+.+...+.+.                   
T Consensus        98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~-------------------  158 (393)
T PRK09705         98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQH-------------------  158 (393)
T ss_pred             HHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            8888899999999998887778888999998999999999988888888887776654431                   


Q ss_pred             hhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccc
Q 015916          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (398)
Q Consensus       189 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (398)
                                        ..+||..+.+.+...+                            +.....++    ..+   
T Consensus       159 ------------------~~~w~~~~~~~~~~~~----------------------------~~~~~~~~----~~~---  185 (393)
T PRK09705        159 ------------------SETWYQTLAWWALPAV----------------------------VALFAWWW----QSA---  185 (393)
T ss_pred             ------------------cCCHHHHHHHHHHHHH----------------------------HHHHHHHH----Hhc---
Confidence                              1245543322111000                            00000001    010   


Q ss_pred             cccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccce
Q 015916          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (398)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g  348 (398)
                      ++++           ++                   ++       +  +     .+.++.+|++++|.+.+.+++.....
T Consensus       186 ~~~~-----------~~-------------------~~-------~--~-----~~~~~~l~~~~~~~l~~~~~~~~~~~  221 (393)
T PRK09705        186 REVA-----------SS-------------------HK-------T--T-----TTPVRVVFTPRAWTLGVYFGLINGGY  221 (393)
T ss_pred             CCCc-----------cc-------------------cC-------C--C-----cCCcccccCHhHHHHHHHHHHHHHHH
Confidence            0110           00                   00       0  0     01235678889998887776665555


Q ss_pred             eeeeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          349 LAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       349 ~~~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ..+.+.++++.++.|.+.  .....+++++++.+||++.|++.||+++|+
T Consensus       222 ~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~  271 (393)
T PRK09705        222 ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK  271 (393)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence            567788899999888863  567889999999999999999999999875

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.87  E-value=9.6e-21  Score=191.01  Aligned_cols=284  Identities=13%  Similarity=0.091  Sum_probs=188.8

Q ss_pred             CCcHHHHHHHHHHHHH-hcccccccccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHHHHH
Q 015916           11 AGKWLGFVTAVWVQAI-SGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        11 ~~~w~~l~~~~~~~~~-~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      .++|.++.++++.... .+..+.++.+.|++++++|++.++.+++.+...++. ..+++.|++.||+|+|++++.+.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            4579888887776542 344567888999999999999999999666555555 45899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHH-HHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .++.++++++       ++++.+++ .|++.|++.+....+....+.+|||++|+++.|+..++.++|+.+.+++...+.
T Consensus        95 ~~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892        95 SLGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             HHHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9888887664       45677664 578889988876667777888999999999999999999999999988887765


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHH
Q 015916          168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL  247 (398)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
                      +...|++.+++..+..+++.+..+++++.++.                                                
T Consensus       168 ~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~------------------------------------------------  199 (455)
T TIGR00892       168 ESFGWRGSFLILGGLLLHCCVCGALMRPVGPS------------------------------------------------  199 (455)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhCCCCcc------------------------------------------------
Confidence            53333333332222222221111111111100                                                


Q ss_pred             HHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHH
Q 015916          248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE  327 (398)
Q Consensus       248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~  327 (398)
                                             ++.+++. +++..++   ++..   +       ++..      .+..+...+.-..+
T Consensus       200 -----------------------~~~~~~~-~~~~~~~---~~~~---~-------~~~~------~~~~~~~~~~~~~~  236 (455)
T TIGR00892       200 -----------------------QRVSKSK-SKEGLPP---DGST---K-------KLSK------KSTAEKINRFLDFS  236 (455)
T ss_pred             -----------------------ccccccc-ccccCCC---CCcc---c-------cccc------cchhhhhhhhcchH
Confidence                                   0000000 0000000   0000   0       0000      00000000111136


Q ss_pred             HhccHhHHHHHHHHHhcccceeeeeechHHHHHHhCCC--chhHHHHHHHHHHHHhhhhhhhhhHHH
Q 015916          328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYF  392 (398)
Q Consensus       328 ~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~  392 (398)
                      ++|++.||.+.+..++...........++++.++.|++  +.+...++.++++.+++++.|+++||.
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       237 LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88999999988877776666666677888888998887  366788999999999999999999973

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.4e-21  Score=187.10  Aligned_cols=284  Identities=15%  Similarity=0.110  Sum_probs=205.7

Q ss_pred             cHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      ||.+++..++.....- +.-.|++-.|.++++.++|.+|++.+.+...+..-+ -.+.|.++||.++|..+.+|.++.++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai  106 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence            4445555555433221 234678889999999999999999998888888755 69999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHH--HhHc
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC--SALF  167 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~--~~~~  167 (398)
                      ..+++++.       ++++.+.++.++.|.-+|...+++..++.+|||+ +||+..++-++...+|+++.+++.  ..+.
T Consensus       107 ~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         107 VNILFGFS-------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHhhh-------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            99998875       5788888888999999998889999999999996 699999999999999999999998  5555


Q ss_pred             CCChhHH-HHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          168 ADDPAKF-LFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       168 ~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      .+..|+. +++-+++..++++++.+.+|+.|++...                                            
T Consensus       180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL--------------------------------------------  215 (448)
T COG2271         180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL--------------------------------------------  215 (448)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC--------------------------------------------
Confidence            5434443 3333344445555555555666653211                                            


Q ss_pred             HHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHH
Q 015916          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF  326 (398)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~  326 (398)
                                                  |++|+-.++.+   + .       ++   +|+       ++++-...+.=.+
T Consensus       216 ----------------------------P~ie~~~~d~~---e-~-------~~---~~~-------~~~~ls~~~i~~~  246 (448)
T COG2271         216 ----------------------------PPIEEYRGDPL---E-I-------YE---EEK-------ENEGLTAWQIFVK  246 (448)
T ss_pred             ----------------------------CCHHHhhcCch---h-h-------hh---hhc-------cCCCccHHHHHHH
Confidence                                        11111000000   0 0       00   000       0001111123356


Q ss_pred             HHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh-CCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       327 ~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~-g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+||||..|++.++.++.-..=.++....+-++.+. |++  +++...+++=++...|.+++||+|||+.+.+
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr  319 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR  319 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence            788999999999999888877778888888777664 666  5778999999999999999999999998443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=1.7e-20  Score=190.23  Aligned_cols=263  Identities=13%  Similarity=0.081  Sum_probs=172.5

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      .+.++.+.|.+++++|++..+.+++.+...++... .++.|++.||+|+|+++..+.++.+++.++.+++       .++
T Consensus        52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~s~  124 (476)
T PLN00028         52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-------SSA  124 (476)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------cCH
Confidence            46677788999999999999999977777777765 6999999999999999999999998888877664       467


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  187 (398)
                      +.+++.|++.|++.+.. .+....+.+|||+ +||+++|+..+...+|+.+.+.+...+...                  
T Consensus       125 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~------------------  185 (476)
T PLN00028        125 TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL------------------  185 (476)
T ss_pred             HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence            77778899999887753 4555668899985 699999999876667766655444222100                  


Q ss_pred             hhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccc
Q 015916          188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (398)
Q Consensus       188 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (398)
                      +     ....   .   .+..+||..+...+.+.+..                           .... ..    +.++ 
T Consensus       186 ~-----~~~~---~---~~~~gWr~~f~i~g~l~l~~---------------------------~l~~-~~----~~~~-  221 (476)
T PLN00028        186 I-----KDAG---A---PSFTAWRIAFFVPGLLHIIM---------------------------GILV-LT----LGQD-  221 (476)
T ss_pred             H-----HhcC---C---cchhhhHHHHHHHHHHHHHH---------------------------HHHH-HH----HcCc-
Confidence            0     0000   0   01246776554332211100                           0000 00    1111 


Q ss_pred             ccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccc
Q 015916          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (398)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~  347 (398)
                        .|+.+        .++   .          +   ++.+      .+ + ......+++.+|++++|.+++.+++..+.
T Consensus       222 --~p~~~--------~~~---~----------~---~~~~------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (476)
T PLN00028        222 --LPDGN--------YRE---L----------K---KSGT------MP-K-DSFSKVLRYGVTNYRTWILALTYGYSFGV  267 (476)
T ss_pred             --CCCCc--------hhh---H----------H---hcCc------cc-c-ccHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence              11000        000   0          0   0000      00 0 00112457889999999999887766666


Q ss_pred             eeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          348 GLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       348 g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ...+.+.++.++.+ .|++  ++..+.++.++++.+||+++|+++||++||+
T Consensus       268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~  319 (476)
T PLN00028        268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF  319 (476)
T ss_pred             HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence            66666677877655 5886  3667888999999999999999999999874

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.87  E-value=1.1e-20  Score=188.36  Aligned_cols=164  Identities=16%  Similarity=0.120  Sum_probs=128.2

Q ss_pred             ccCCCCCCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHH
Q 015916            5 VSYTSSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL   82 (398)
Q Consensus         5 ~~~~~~~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~   82 (398)
                      .|++.. .+|..+..+.+.....+. .+..+...|.+++++|+|..+.+++.+...++..+ +++.|++.||+|||+++.
T Consensus         9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~   87 (426)
T PRK12307          9 YSEITR-PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMM   87 (426)
T ss_pred             cccCCH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            344443 345555555555544444 33445566888999999999999987777788765 799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHH
Q 015916           83 IGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTD  161 (398)
Q Consensus        83 ~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~  161 (398)
                      ++.++.+++.++..+.       ++++.++++|++.|++.+..+......+.+++|+ +|+++.|+...+.++|..+.+.
T Consensus        88 ~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~  160 (426)
T PRK12307         88 WSIVAYSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY  160 (426)
T ss_pred             HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence            9999999999887765       4688888999999999998888888889999985 5999999999999999999888


Q ss_pred             HHHhHcCCChhHHHH
Q 015916          162 LCSALFADDPAKFLF  176 (398)
Q Consensus       162 l~~~~~~~~~~~~~~  176 (398)
                      +...+.+...|++.+
T Consensus       161 l~~~l~~~~~w~~~f  175 (426)
T PRK12307        161 FMPSFAEAYGWRAAF  175 (426)
T ss_pred             HHHHHcccCCHHHHH
Confidence            776665433344333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.86  E-value=2.7e-20  Score=183.27  Aligned_cols=180  Identities=17%  Similarity=0.140  Sum_probs=142.2

Q ss_pred             CCCCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHH
Q 015916            9 SSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSL   86 (398)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~   86 (398)
                      .++++|+.+...++.....+. .+..+...|++++++|++..+.+++.+...++..+ +++.|++.||+|||+++.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            556788887777776655554 46677888999999999999999977777777654 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916           87 EGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus        87 ~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      +..++.+++.+.       ++++.+++.|++.|++.+..+......+.+++| ++|+++.|+..++.++|..+.+.+...
T Consensus        86 ~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        86 LFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988887664       468888889999999999888888888999998 469999999999999999998888777


Q ss_pred             HcCCC--hhHHHHHHHHHHHHHHHhhhhcccc
Q 015916          166 LFADD--PAKFLFMLAIVPFVVCLGAIFFLRE  195 (398)
Q Consensus       166 ~~~~~--~~~~~~~~~~~~~~i~~~~~~~l~~  195 (398)
                      +.+..  .|++.+.+++++.++.+.....+|+
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  190 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFALWLRKNIPE  190 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            66532  3666666555555444433333333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.86  E-value=5.5e-20  Score=181.56  Aligned_cols=263  Identities=8%  Similarity=-0.019  Sum_probs=180.5

Q ss_pred             CCCcHHHHHHHHHHHHHh-cccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHH
Q 015916           10 SAGKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLE   87 (398)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~-g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~   87 (398)
                      ++++|..+....+..... ...|......|++++++|+|.++.+++.+...++.. ..++.|++.||+|+|+++..+.++
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   83 (390)
T PRK03545          4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL   83 (390)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            345675444333333222 223333445789999999999999997777666664 478999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus        88 ~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      .+++.+.+.++       ++++.+++.|++.|++.+..++.....+.+++| ++||+++|+...+.++|..+.+++...+
T Consensus        84 ~~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l  156 (390)
T PRK03545         84 FIASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI  156 (390)
T ss_pred             HHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99998888764       578889899999999888777777788899998 5799999999999999999988887665


Q ss_pred             cCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          167 FADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      .+                                      ..+||..+...+.+...                       
T Consensus       157 ~~--------------------------------------~~gw~~~f~~~~~~~~l-----------------------  175 (390)
T PRK03545        157 GQ--------------------------------------YLGWRTTFLAIGGGALI-----------------------  175 (390)
T ss_pred             HH--------------------------------------HhcHHHHHHHHHHHHHH-----------------------
Confidence            43                                      34566544222210000                       


Q ss_pred             HHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHH
Q 015916          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF  326 (398)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~  326 (398)
                          ........    ++    +++          ++++                    ++              ..+.+
T Consensus       176 ----~~~~~~~~----~~----~~~----------~~~~--------------------~~--------------~~~~~  199 (390)
T PRK03545        176 ----TLLLLIKL----LP----LLP----------SEHS--------------------GS--------------LKSLP  199 (390)
T ss_pred             ----HHHHHHHh----CC----CCC----------CCCc--------------------ch--------------HHHHH
Confidence                00000000    00    000          0000                    00              01346


Q ss_pred             HHhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       327 ~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +.+|++.+|..++..++......+..+.++++.++ .|.+.  .....+++++++.+|+++.|+++||+++|.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        200 LLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            78999999877665555444444445566777776 47663  566788899999999999999999998764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.86  E-value=3.7e-20  Score=183.47  Aligned_cols=154  Identities=15%  Similarity=0.016  Sum_probs=128.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHH
Q 015916            7 YTSSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIG   84 (398)
Q Consensus         7 ~~~~~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g   84 (398)
                      .+..+++|.++..+++.....+. .+..+...|.+.+++|++..+.+++.+...++... .++.|++.||+|+|+++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (406)
T PRK11551          7 SASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS   86 (406)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            34556789888888777665554 56778888999999999999999987777787765 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHH
Q 015916           85 SLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLC  163 (398)
Q Consensus        85 ~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~  163 (398)
                      .++..++.+++.+.       ++++.+.+.|++.|++.+..+......+.+++| ++||+++|+...+..+|+.+.+.+.
T Consensus        87 ~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551         87 VALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             HHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888887776653       467888889999999998887778888999998 5799999999999999988887776


Q ss_pred             HhHc
Q 015916          164 SALF  167 (398)
Q Consensus       164 ~~~~  167 (398)
                      ..+.
T Consensus       160 ~~~~  163 (406)
T PRK11551        160 VLAA  163 (406)
T ss_pred             HHHc
Confidence            5443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.86  E-value=1.6e-19  Score=184.13  Aligned_cols=315  Identities=14%  Similarity=0.059  Sum_probs=203.9

Q ss_pred             CcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL   89 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (398)
                      |+|..++..++..+.... ....++..|++.+++|.+..+.+|+.+.+.++.. ..++.|++.||+|||+++.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456665555554433332 3455677899999999999999998777777775 47999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh-c-cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF-R-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        90 ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~F-p-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      ++.+.++++       ++++.++++|+++|+|.+..++.....+.+++ | ++|+++.|+.....++|..+.+.+.+.+.
T Consensus        83 ~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         83 LASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             HHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999988765       57889999999999999887766677777888 4 47999999999999999999999999888


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhh-hcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          168 ADDPAKFLFMLAIVPFVVCLGAI-FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~~~~-~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      +...|++.+++.....++.++.. +++|+.|+....    +.++...........+..+..... ..++.  +.+.  ..
T Consensus       156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~----~~d~~g~~~~~~~~~~l~~~~~~~-~~~~~--~~~~--~~  226 (495)
T PRK14995        156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQ----PLNLGHALMLIVAILLLVYSAKTA-LKGFL--SLWV--TS  226 (495)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC----CCChHhHHHHHHHHHHHHHHHHhc-cccCC--chHH--HH
Confidence            88788888877665554444433 445554432111    222222211111111111111110 01100  0000  00


Q ss_pred             HHHHHHhh-hhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchH
Q 015916          247 LIILLASP-VAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI  325 (398)
Q Consensus       247 ~~~~l~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~  325 (398)
                      ..+++... +..++   .++                 ..                             .+.|     .-.
T Consensus       227 ~~~~~~~~~l~~f~---~~e-----------------~~-----------------------------~~~p-----~~~  252 (495)
T PRK14995        227 LTLLTGALLLGLFI---RTQ-----------------LA-----------------------------ASRP-----MID  252 (495)
T ss_pred             HHHHHHHHHHHHHH---HHH-----------------hc-----------------------------CCCC-----CcC
Confidence            00000000 00010   000                 00                             0001     111


Q ss_pred             HHHhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       326 ~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+++|++.|+...+..++......+....++...+. .|++  ++..+...++++..++.++.|++.||+++|+
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~  326 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL  326 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            468889998887776665554444444556666665 5776  3667888899999999999999999999875

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.85  E-value=3.7e-20  Score=180.63  Aligned_cols=266  Identities=16%  Similarity=0.133  Sum_probs=189.0

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.++...|.+++++|++..+.+++.+...++... .++.|++.||+|||+++.++.++..++...+++.       .+++
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~   83 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAYV   83 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCHH
Confidence            4556777889999999999999987777777765 7999999999999999999999999988887764       4688


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHH-HH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV-CL  187 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~  187 (398)
                      .+++.|++.|++.+...++....+.+++|+ +|+++.|+.....++|..+.+.+...+.+...|++.+.+.....++ .+
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  163 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV  163 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            888999999999998888888899999985 6999999999999999999998888766544444444333322222 22


Q ss_pred             hhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccc
Q 015916          188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (398)
Q Consensus       188 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (398)
                      +..++.+++|+....                                                                 
T Consensus       164 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  178 (399)
T TIGR00893       164 LWLKFIPDPPQKAKW-----------------------------------------------------------------  178 (399)
T ss_pred             HhhheecCCCCcccc-----------------------------------------------------------------
Confidence            222223333321110                                                                 


Q ss_pred             ccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccc
Q 015916          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (398)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~  347 (398)
                            +  .++++....  .+ ..       +   ++++      + ++...+..+.++.+|++++|.+.+..++....
T Consensus       179 ------~--~~~~~~~~~--~~-~~-------~---~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (399)
T TIGR00893       179 ------L--TEEEKYIVV--GG-LL-------A---EQQG------K-GPSTPKKYQIKELLKDRRVWGLALGQFLVNIG  230 (399)
T ss_pred             ------C--CHHHHhhcc--hh-hc-------c---cccc------c-cccCCCccchHHHhcCHHHHHHHHHHHHHHhH
Confidence                  0  000000000  00 00       0   0000      0 00011123568899999999999988888777


Q ss_pred             eeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          348 GLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       348 g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ...+.+..+.+.++ .|.+  +.....++..+++.+++++.|+++||++||+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            77777788887765 5665  3567888899999999999999999999985

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.85  E-value=6.1e-20  Score=180.08  Aligned_cols=243  Identities=15%  Similarity=0.065  Sum_probs=162.6

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.++...|++++++|+|.+|.+++.+...++... +++.|++.||+|||+++..+......+.. ....      .++++
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~------~~~~~   80 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD------PFNYE   80 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH------hccHH
Confidence            4667788999999999999999987777777754 78999999999988876554444433322 2211      03678


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  188 (398)
                      .+.+.|++.|+|.+. +.+.....++|+| ++|++++++...+..+|..+.+.+...+.+                    
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~--------------------  139 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT--------------------  139 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            888999999999985 4566667789998 579999999999999999999877766544                    


Q ss_pred             hhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccc
Q 015916          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (398)
Q Consensus       189 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (398)
                                        ..+||..+...+.+.+..                            ..+....   ++ +  
T Consensus       140 ------------------~~gWr~~f~~~~~l~~~~----------------------------~~~~~~~---lp-~--  167 (368)
T TIGR00903       140 ------------------AGGLQLLIIPIAAVAAAG----------------------------IILVLAA---LP-A--  167 (368)
T ss_pred             ------------------ccchHHHHHHHHHHHHHH----------------------------HHHHHHH---cC-C--
Confidence                              345665443222111000                            0000000   11 0  


Q ss_pred             cccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccce
Q 015916          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (398)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g  348 (398)
                       +|+.        +.+.   .              +..+      .       ...+++++|++++|.+++..++.....
T Consensus       168 -~p~~--------~~~~---~--------------~~~~------~-------~~~~~~ll~~~~~~~~~~~~~~~~~~~  208 (368)
T TIGR00903       168 -LPFQ--------AAEG---F--------------GFKD------A-------VKEFGALAGRKDLWIIGAILGFGVALF  208 (368)
T ss_pred             -CCCC--------CCCC---c--------------chHH------H-------HHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence             1100        0000   0              0000      0       013678999999999999999988888


Q ss_pred             eeeeechHHHHHHhCCCc-hhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          349 LAVMNNMGQIGLALGYVD-VSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       349 ~~~~~n~~~i~~~~g~~~-~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      ..+.+.+++++++.|++. .....++..+   .|-+..++++||..||
T Consensus       209 ~~~~~wlp~~L~~~g~s~~~~~~~~l~~~---~g~~g~~~~~d~~~r~  253 (368)
T TIGR00903       209 DNLAIWLEAALRPAGLEDIAGDAVALAIL---AGLIGVAVIPDRVARA  253 (368)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHH---HHHHHHHHhhHHhhhh
Confidence            888889999999888764 2233334344   4445568999998765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.85  E-value=7.7e-20  Score=186.70  Aligned_cols=189  Identities=13%  Similarity=0.052  Sum_probs=139.1

Q ss_pred             cHHHHHHHHHHHHHhccc-ccccccHHHHHHHc-----CCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISGNN-YTFSNYSDALKTLM-----NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGS   85 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g~~-~~~s~~~~~l~~~~-----g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~   85 (398)
                      ++..+..+.+..+..|.. ...+...|.+.+++     +.+..+.+++.....++..+ .++.|++.||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            444444444444444432 23344556665542     34555667777777787765 799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHH
Q 015916           86 LEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus        86 ~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~  164 (398)
                      ++..++.++.+++... .+..+++.++++|++.|++.|..+.....++.+++|+ +||+++++......+|..+.+.+..
T Consensus        94 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASGLSPGS-SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHccCc-ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988877654111 0001256788899999999999888889999999995 6999999999998888877766654


Q ss_pred             hHcC-----------------------CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 015916          165 ALFA-----------------------DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (398)
Q Consensus       165 ~~~~-----------------------~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~  202 (398)
                      .+..                       +..|++++.++.+|.++.++..+++||.|+++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~  233 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTAD  233 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3321                       1259999999999999998989999999998654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00895 2A0115 benzoate transport

Probab=99.84  E-value=3.4e-20  Score=181.80  Aligned_cols=182  Identities=20%  Similarity=0.159  Sum_probs=141.9

Q ss_pred             CCCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHH
Q 015916           10 SAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE   87 (398)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~   87 (398)
                      .+++|..+..+++.....+. .+.++.+.|.+.+++|++..+.+++.....++... .++.|++.||+|||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            34556666666655554443 45667788899999999999999977777777655 79999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus        88 ~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      ..++.+++.+.       ++++.+++.+++.|++.+..+......+.+++|+ +|+++.|+...+..+|..+.+.+...+
T Consensus        92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895        92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence            88888877653       4677788889999999998888888899999985 699999999999999999999888887


Q ss_pred             cCCChhHHHHHHH-HHHHHHHHhhhhcccccCC
Q 015916          167 FADDPAKFLFMLA-IVPFVVCLGAIFFLRETTP  198 (398)
Q Consensus       167 ~~~~~~~~~~~~~-~~~~~i~~~~~~~l~~~p~  198 (398)
                      .+...|+..+.+. +.+.+..++..+++|++|+
T Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID  197 (398)
T ss_pred             hhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence            7765565554444 4555555555566666654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.84  E-value=5.7e-20  Score=185.20  Aligned_cols=285  Identities=13%  Similarity=0.058  Sum_probs=177.2

Q ss_pred             CcHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL   89 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (398)
                      ++|..+.+.++...... ..+.++...|.++++ |+|..+.+++.+...++.. .+++.|++.||+|+|++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            34655544444333222 234466777888888 9999999997777777765 48999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHh-Hc
Q 015916           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA-LF  167 (398)
Q Consensus        90 ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~-~~  167 (398)
                      ++.+.+++....   ..+++.+++.+++.|++.+..+.+....+.+|||+ +||+++|+...+.++|+.+.+++... ..
T Consensus       105 i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        105 AVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             HHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            888877654111   12566777788999998887776667788899985 69999999999988887666655432 11


Q ss_pred             CCChhHHHHHHHH-HHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          168 ADDPAKFLFMLAI-VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       168 ~~~~~~~~~~~~~-~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      ....|++.+++.. ...++.++..+++|+.|++...                                            
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~--------------------------------------------  217 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL--------------------------------------------  217 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC--------------------------------------------
Confidence            1112222222211 1111122222222222211000                                            


Q ss_pred             HHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHH
Q 015916          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF  326 (398)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~  326 (398)
                                              +    +.++.+.+.+   ++.             +++      ++......+.-.+
T Consensus       218 ------------------------~----~~~~~~~~~~---~~~-------------~~~------~~~~~~~~~~~~~  247 (452)
T PRK11273        218 ------------------------P----PIEEYKNDYP---DDY-------------NEK------HEQELTAKQIFMQ  247 (452)
T ss_pred             ------------------------C----Chhhhhhccc---ccc-------------ccc------cCCCccHHHHHHH
Confidence                                    0    0000000000   000             000      0000000011123


Q ss_pred             HHhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 015916          327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (398)
Q Consensus       327 ~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~  394 (398)
                      .++|++.+|.+++..++.........+.++.+.++ .|++  +++....++++++.+|+++.|+++||+++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            47899999999888877766656677888888887 4776  35567778899999999999999999954

>PRK03699 putative transporter; Provisional

Probab=99.84  E-value=2.1e-19  Score=177.71  Aligned_cols=264  Identities=14%  Similarity=0.099  Sum_probs=183.6

Q ss_pred             CCcHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916           11 AGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      .+||+....+++.....+ ..+.++...|++++++|+|.++.+++.+...++..+ .++.|++.||+|+|+++..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456665555555555444 357788899999999999999999977777777765 789999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .++.++..+.       ++++.+++.|++.|++.+..+......+.+++|+ +||.+.++.....++|+.+.+.+...++
T Consensus        83 ~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         83 ILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             HHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888877654       4678888899999998887777777888999985 6999999998888999888888776654


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHH
Q 015916          168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL  247 (398)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
                      .+                                     ..+||..+...+.+.+.                        
T Consensus       156 ~~-------------------------------------~~gw~~~f~~~~~~~~~------------------------  174 (394)
T PRK03699        156 AR-------------------------------------SIEWYWVYACIGLVYVA------------------------  174 (394)
T ss_pred             hc-------------------------------------cccHHHHHHHHHHHHHH------------------------
Confidence            31                                     23555543222110000                        


Q ss_pred             HHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHH
Q 015916          248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE  327 (398)
Q Consensus       248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~  327 (398)
                          ...+.+.     . +   .|+.+       ++++   +               ++       +  +..       +
T Consensus       175 ----~~~~~~~-----~-~---~p~~~-------~~~~---~---------------~~-------~--~~~-------~  200 (394)
T PRK03699        175 ----IFILTLF-----S-E---FPALG-------KHAP---K---------------AD-------K--PVA-------K  200 (394)
T ss_pred             ----HHHHHHh-----c-C---Ccccc-------ccCc---c---------------cc-------C--ccc-------c
Confidence                0000000     0 1   11000       0000   0               00       0  000       0


Q ss_pred             HhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       328 ~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ...++.+|.+.+..++.......+.+.++.++++ .|++  +.....+.+.+++.+||++.|+++||+++|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  272 (394)
T PRK03699        201 EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR  272 (394)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            0124678888877777665555667788888865 5776  3667889999999999999999999999986

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.83  E-value=7.1e-20  Score=178.19  Aligned_cols=265  Identities=16%  Similarity=0.183  Sum_probs=178.0

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      ...++...|.+++++|+|..+.+++.+...++... .++.|++.||+|+|+++.++.++..++.+++.+.       +++
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   83 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TSL   83 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hhH
Confidence            34566778889999999999999987777777765 7999999999999999999999999998888765       467


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHh-HcCCChhHHHHHHHH-HHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA-LFADDPAKFLFMLAI-VPFVV  185 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~-~~~~~~~~~~~~~~~-~~~~i  185 (398)
                      +.+++.+++.|++.+..++.....+.+++|+ +|+++.|+...+..+|..+.+++... +.+...|++.+.+.. ...+.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV  163 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            8888899999999998888888899999985 69999999999999999998854333 322222332222111 11122


Q ss_pred             HHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccc
Q 015916          186 CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKS  265 (398)
Q Consensus       186 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~  265 (398)
                      .+++.++.|+.|+...                                                                
T Consensus       164 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  179 (379)
T TIGR00881       164 SLICFLLLRDSPQSCG----------------------------------------------------------------  179 (379)
T ss_pred             HHHHheeeCCCccccc----------------------------------------------------------------
Confidence            2222222222221100                                                                


Q ss_pred             ccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcc
Q 015916          266 WNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGV  345 (398)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~  345 (398)
                             .++ .+++.++++   + +            +++.      ++++....+...++.+|++.+|.+.+..++..
T Consensus       180 -------~~~-~~~~~~~~~---~-~------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (379)
T TIGR00881       180 -------LPP-AEEMPNEEP---D-G------------DAEK------KEEELTKKQIFLQYVLLNKVLWYISLGYVFVY  229 (379)
T ss_pred             -------cCc-cccCccccc---c-c------------cccc------ccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence                   000 000000000   0 0            0000      00000111234678899999999988877766


Q ss_pred             cceeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          346 GTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       346 ~~g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      .....+.+..+.+.++ .|.+  +.....++.++.+.+|+++.|++.||..+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       230 VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            6655666667777654 5776  356788899999999999999999987543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.83  E-value=6.2e-19  Score=174.56  Aligned_cols=157  Identities=9%  Similarity=-0.017  Sum_probs=126.6

Q ss_pred             ccCCCCCCcHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHH
Q 015916            5 VSYTSSAGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL   82 (398)
Q Consensus         5 ~~~~~~~~~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~   82 (398)
                      .+++..|+.|..+........... ..|....+.|++.+++|++.++.++..+...++.. ..++.|++.||+|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~   89 (394)
T PRK10213         10 GADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVI   89 (394)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence            455677778886555555433333 23444446788999999999999996666666664 5899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHH
Q 015916           83 IGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTD  161 (398)
Q Consensus        83 ~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~  161 (398)
                      .+.++.+++.++..+.       ++++.+++.|++.|++.+...+.....+.+++| ++|+++.++..++.++|..+.++
T Consensus        90 ~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~  162 (394)
T PRK10213         90 LFAVLLTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAP  162 (394)
T ss_pred             HHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988887664       578999999999999999887888888899998 46999999999999999999998


Q ss_pred             HHHhHcC
Q 015916          162 LCSALFA  168 (398)
Q Consensus       162 l~~~~~~  168 (398)
                      +...+.+
T Consensus       163 l~~~l~~  169 (394)
T PRK10213        163 LGSFLGE  169 (394)
T ss_pred             HHHHHHh
Confidence            8877654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.83  E-value=1.5e-19  Score=189.94  Aligned_cols=185  Identities=13%  Similarity=0.080  Sum_probs=151.9

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      +.+|..++++++..+..+. ....+...|.+++++|++..+.+++.+...++.++ .++.|++.||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4467666655555544444 34456678889999999999999987777888866 799999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +++.++++++       ++++.++++|++.|+|.+...+....++.+++|+ +||+++++..++..+|+++.+.+...+.
T Consensus       243 ~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       243 GFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888887764       4688888999999999998888888999999995 6999999999999999888877655544


Q ss_pred             CC-------------ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 015916          168 AD-------------DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (398)
Q Consensus       168 ~~-------------~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~  202 (398)
                      +.             ..|++++++++++.++.++..+++||.|+++..
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~  363 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLE  363 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            21             358889999999999999999999999998654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.83  E-value=2.5e-19  Score=174.51  Aligned_cols=269  Identities=14%  Similarity=0.129  Sum_probs=173.8

Q ss_pred             ccccccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 015916           29 NNYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (398)
Q Consensus        29 ~~~~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~  106 (398)
                      ..+.++.+.|+ +++++|+|..+.+++.+...++..+ .++.|++.||+|+|+++.++.++..++.+++.+.       +
T Consensus        16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-------~   88 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-------V   88 (366)
T ss_pred             HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------h
Confidence            34566778885 8999999999999987777777765 7999999999999999999999999998888764       4


Q ss_pred             -hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 015916          107 -SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (398)
Q Consensus       107 -~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (398)
                       +++.+++.|++.|++.+. +.+....+.+|+|+ +|+++.++......+|..+.+.+...+...               
T Consensus        89 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~---------------  152 (366)
T TIGR00886        89 QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS---------------  152 (366)
T ss_pred             hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------
Confidence             678888899999988654 45677889999985 699999998866666666555544332210               


Q ss_pred             HHHhhhhcccccCCCCCCchhhhhhhhHHH-HHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccc
Q 015916          185 VCLGAIFFLRETTPASTVDEEKEEAKYFSI-INTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI  263 (398)
Q Consensus       185 i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~  263 (398)
                             +.+..++      ....+||..+ ...+.+...                           ........    .
T Consensus       153 -------~~~~~~~------~~~~~w~~~~~~~~~~~~~~---------------------------~~~~~~~~----~  188 (366)
T TIGR00886       153 -------LIFGAGL------PAHLAWGWAFVIVPAGILLL---------------------------PALLIFFV----G  188 (366)
T ss_pred             -------HHhcccc------cccccccchhHHHHHHHHHH---------------------------HHHHHHHh----c
Confidence                   0000000      0124566543 111100000                           00000000    1


Q ss_pred             ccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHh
Q 015916          264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC  343 (398)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~  343 (398)
                      + +   ++++++   ++++.+.   ++              +..      .  ...+...+.++.+|++++|.+.+.+++
T Consensus       189 ~-~---~~~~~~---~~~~~~~---~~--------------~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (366)
T TIGR00886       189 A-D---TPPGKP---ATGKLSF---KG--------------ARW------S--VGTGALGDQLKVFRDRHTWILALLYSV  236 (366)
T ss_pred             c-c---CCcccc---cchhccc---cc--------------ccc------c--ccchhHHHHHHHHhccchhhHHHHHHH
Confidence            1 1   110000   0000000   00              000      0  000001145778999999999888877


Q ss_pred             cccceeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          344 GVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       344 ~~~~g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ..+....+.+..+.+.++ .|.++  ...+.++..+.+.++|+++|+++||+++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  292 (366)
T TIGR00886       237 TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR  292 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence            766666667778887765 47763  556788899999999999999999999875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.83  E-value=4.1e-19  Score=177.94  Aligned_cols=281  Identities=11%  Similarity=-0.025  Sum_probs=170.4

Q ss_pred             CCCCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcC---CChhhHHH---HHHHHHhhhhh-hhhhhhhhcccCchHH
Q 015916            9 SSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMN---LTQLELNN---LSVVKDIGKAF-GLLAGLASDRIPAPII   80 (398)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g---~s~~~~~~---i~~~~~~~~~~-~~~~G~l~Dr~G~r~~   80 (398)
                      +++++|..+..+++....... .+.++...|.+.++++   .+..+...   +.....++..+ +++.|++.||+|||++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            445666655555554444333 4557778888999884   55554333   22333344434 7899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc-cCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHH
Q 015916           81 LLIGSLEGLVGYGAQWLVVSRK-IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAI  158 (398)
Q Consensus        81 ~~~g~~~~~ig~~~~~~~~~~~-~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i  158 (398)
                      +.++.++++++.++++++..-. +...++..+.++|+++|+|.|..++...+++.||+| ++||++.++...+...|..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999998887641000 000123457779999999999888888999999998 57999999887776666555


Q ss_pred             HHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccc
Q 015916          159 FTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET  238 (398)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (398)
                      .+.+...+..                       .+   ++    .+-...+||..+...+...+                
T Consensus       176 ~~~~~~~~~~-----------------------~~---~~----~~~~~~gWr~~F~i~~~~~l----------------  209 (432)
T PRK10406        176 ALLVVVVLQQ-----------------------TL---ED----AELREWGWRIPFALGAVLAV----------------  209 (432)
T ss_pred             HHHHHHHHHH-----------------------hC---CH----HHHhccchHHHHHHHHHHHH----------------
Confidence            4433211100                       00   00    00013577765532211000                


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCC
Q 015916          239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPV  318 (398)
Q Consensus       239 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  318 (398)
                                  + .   +.    ++..   .+          |.++   .              ++++      .+   
T Consensus       210 ------------l-~---~~----~~~~---~~----------e~~~---~--------------~~~~------~~---  230 (432)
T PRK10406        210 ------------V-A---LW----LRRQ---LD----------ETSQ---Q--------------ETRA------LK---  230 (432)
T ss_pred             ------------H-H---HH----HHhc---CC----------CCch---H--------------HHhh------hc---
Confidence                        0 0   00    1100   00          0000   0              0000      00   


Q ss_pred             cCCcchHHHHhccHhHHHHHHHHHhc-ccceeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 015916          319 LGEDHTIFEAMWTVDFWILFVSFLCG-VGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (398)
Q Consensus       319 ~~~~~t~~~~l~t~~Fw~l~~~~~~~-~~~g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~  394 (398)
                        +..+.++++|++++|.+.+...+. ......+.+.+++++++ .|++.  .....++..+...++..+.|+++||++|
T Consensus       231 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr  308 (432)
T PRK10406        231 --EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR  308 (432)
T ss_pred             --ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence              012467889999999877665543 33334456677887754 68763  4456777788888999999999999998


Q ss_pred             Hh
Q 015916          395 MV  396 (398)
Q Consensus       395 ~~  396 (398)
                      |+
T Consensus       309 r~  310 (432)
T PRK10406        309 RT  310 (432)
T ss_pred             hH
Confidence            86

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.82  E-value=2e-19  Score=181.69  Aligned_cols=252  Identities=10%  Similarity=0.050  Sum_probs=172.5

Q ss_pred             HcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhh
Q 015916           43 LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (398)
Q Consensus        43 ~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (398)
                      +++++..+.+++.+...++... +++.|++.||+|+|+++.++.++.+++.++..+...     .+++.+++.|++.|++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHh
Confidence            7899999999987777788765 799999999999999999999988888777654321     2466777899999999


Q ss_pred             hhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhh-hhcccccCC
Q 015916          122 TTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGA-IFFLRETTP  198 (398)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~-~~~l~~~p~  198 (398)
                      .+..++.....+.+|+| ++||++.|+..++..+|..+.+++...+.+. ..|+..+.+..+..++..+. ..+.++.|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            99888888889999998 4799999999999999999999988776543 13332222221111111111 111111111


Q ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccCCCCCcc
Q 015916          199 ASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVE  278 (398)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~  278 (398)
                      .                                                                          ++..+
T Consensus       225 ~--------------------------------------------------------------------------~~~~~  230 (465)
T TIGR00894       225 I--------------------------------------------------------------------------HPCIS  230 (465)
T ss_pred             c--------------------------------------------------------------------------CCCCC
Confidence            0                                                                          00000


Q ss_pred             hhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeeeechHHH
Q 015916          279 EQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI  358 (398)
Q Consensus       279 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i  358 (398)
                      ++ +.+..                 +++   .+. ++.+. .....+++++|++.+|.+.+..++.......+.+.++.+
T Consensus       231 ~~-~~~~i-----------------~~~---~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~  287 (465)
T TIGR00894       231 KF-EKKYI-----------------NSS---LQG-QKGST-RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTF  287 (465)
T ss_pred             HH-HHHHH-----------------Hhh---ccc-ccCCC-CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 00000                 000   000 00000 112357899999999999998888777777777888888


Q ss_pred             HHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          359 GLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       359 ~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +++ +|++.  .....++..++..+++++.|+++||+.+|+
T Consensus       288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            765 57763  566778889999999999999999988654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.82  E-value=7.6e-19  Score=177.88  Aligned_cols=296  Identities=12%  Similarity=0.041  Sum_probs=193.1

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      ..+...|.+.+++|.+..+.+++.+...++..+ .++.|++.||+|||+++.++.++..++.+++.++       ++++.
T Consensus        20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~   92 (485)
T TIGR00711        20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------PNLEL   92 (485)
T ss_pred             HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-------CCHHH
Confidence            445678889999999999999987777777765 7999999999999999999999999998887654       56888


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  189 (398)
                      +.++|++.|++.+...+.....+.+++| ++||++.++...+..+|..+.+.+...+.+...|++.+++.....++.++.
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~  172 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV  172 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence            8899999999999888888888999998 579999999999999999999988888877767877776666555444444


Q ss_pred             h-hcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccch-hHHHHHHHHHHHHhhhhhcccccccccc
Q 015916          190 I-FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL-ALIFSGILIILLASPVAIPVYSFIKSWN  267 (398)
Q Consensus       190 ~-~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (398)
                      . +++|++++....    +.++..............+.....-..++.+.. ...........+..    .    .    
T Consensus       173 ~~~~~~~~~~~~~~----~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~----  236 (485)
T TIGR00711       173 AFFILPRDKPAASE----NFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIA----F----V----  236 (485)
T ss_pred             HHHHcCCccccccC----CCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHH----H----H----
Confidence            3 344443322111    222222111111000000000000000000000 00000000000000    0    0    


Q ss_pred             ccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccc
Q 015916          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (398)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~  347 (398)
                                                     .    .|..      +++     .....+.+|+++||...+..++....
T Consensus       237 -------------------------------~----~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (485)
T TIGR00711       237 -------------------------------V----WELT------DDN-----PLVDLRLFKYRNFTIGCVYMSLLGLG  270 (485)
T ss_pred             -------------------------------H----HHHc------CCC-----CccCHHHHcCCChHHHHHHHHHHHHH
Confidence                                           0    0000      000     11224688999999887777666555


Q ss_pred             eeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          348 GLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       348 g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .....+.++.+.++ .|++.  ........+++..+++++.|++.||++||+
T Consensus       271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  322 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK  322 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence            55566677777776 57763  567788899999999999999999999886

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.82  E-value=3.9e-19  Score=178.22  Aligned_cols=163  Identities=17%  Similarity=0.083  Sum_probs=128.7

Q ss_pred             ccccHHHHHHHcCCC--------hhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 015916           33 FSNYSDALKTLMNLT--------QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI  103 (398)
Q Consensus        33 ~s~~~~~l~~~~g~s--------~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~  103 (398)
                      .+...+.+..+++.+        ..+.+++.+...++..+ +++.|++.||+|||++++++.++..++.++..+...   
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---  123 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF---  123 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            344456666666655        88999977777777755 899999999999999999999999998888754311   


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHH---HhHcCCChhHHHHHHH
Q 015916          104 QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC---SALFADDPAKFLFMLA  179 (398)
Q Consensus       104 ~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~---~~~~~~~~~~~~~~~~  179 (398)
                       ..+++.++++|++.|+|.+..+......+.+++|+ +|+++.++...+..+|..+.+.+.   ....+...|++.+.+.
T Consensus       124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~  202 (481)
T TIGR00879       124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ  202 (481)
T ss_pred             -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence             13456788899999999998888888899999984 699999999999999999988887   3333445788888887


Q ss_pred             HHHHHHHHhhhhcccccCCC
Q 015916          180 IVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       180 ~~~~~i~~~~~~~l~~~p~~  199 (398)
                      ....++.++..+++++.|+.
T Consensus       203 ~~~~~~~~~~~~~l~~~~~~  222 (481)
T TIGR00879       203 LIPAGLLFLGLFFLPESPRW  222 (481)
T ss_pred             HHHHHHHHHHHhcCCCChHH
Confidence            77777777777788877653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.82  E-value=6.2e-19  Score=176.94  Aligned_cols=286  Identities=16%  Similarity=0.077  Sum_probs=180.2

Q ss_pred             cHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      +|..+.+.++...... ....+....|.+++ +|+++.+.+++.+...++... .++.|++.||+|+|+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4554444444333222 23445555676775 699999999977777777755 79999999999999999999999988


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      +.+.+.....  . ..+++.+++.+++.|++.+..+.+....+.++|| ++||+++|+..++.++|+.+.+++.......
T Consensus       104 ~~~~~~~~~~--~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       104 VMLLMGFVPW--A-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHhcccc--c-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            8877654310  0 1346667778999999888777777788899998 5799999999999999999988877654432


Q ss_pred             -ChhHHHHHHHHHH-HHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHH
Q 015916          170 -DPAKFLFMLAIVP-FVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL  247 (398)
Q Consensus       170 -~~~~~~~~~~~~~-~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
                       ..|+..+++.... .+..++..+++||.|++...                                             
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------------------  215 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL---------------------------------------------  215 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC---------------------------------------------
Confidence             2344333332222 22222222233332221000                                             


Q ss_pred             HHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHH
Q 015916          248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE  327 (398)
Q Consensus       248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~  327 (398)
                                             ++.    ++++.+.+  .+.             .++.      ++ +...++...++
T Consensus       216 -----------------------~~~----~~~~~~~~--~~~-------------~~~~------~~-~~~~~~~~~~~  246 (438)
T TIGR00712       216 -----------------------PPI----EEYRNDYP--DDY-------------NEKA------EQ-ELTAKEIFMQY  246 (438)
T ss_pred             -----------------------CCc----hhcccccc--ccc-------------cccc------cc-ccchHHHHHHH
Confidence                                   000    00000000  000             0000      00 00001111235


Q ss_pred             HhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       328 ~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+|++.+|.+.+..++.......+.+.++.++++ .|.+.  +.+..+++++.+.+|++++|+++||+++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            7899999999887766655555667788888887 47763  567788899999999999999999996543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00898 2A0119 cation transport protein

Probab=99.81  E-value=1.4e-19  Score=184.75  Aligned_cols=163  Identities=16%  Similarity=0.218  Sum_probs=135.6

Q ss_pred             cccccccHHHHHHHcCCC---hhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           30 NYTFSNYSDALKTLMNLT---QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s---~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      .|.++.+.+.++++++++   ..+.++..+...++..+ +++.|++.||+|||++++++.++..++.++.+++       
T Consensus       105 ~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-------  177 (505)
T TIGR00898       105 EYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-------  177 (505)
T ss_pred             EecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-------
Confidence            355556778899999999   88999988888888866 7999999999999999999999999888887764       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (398)
                      ++++.++++|++.|++.+..+......+.+++|+ +|+.+.++...+.++|..+.+.+.. ++.+  |++.+++..++.+
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~--wr~~~~~~~i~~~  254 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY-FIPD--WRWLQLAVSLPTF  254 (505)
T ss_pred             ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhH--HHHHHHHHHHHHH
Confidence            5788899999999999998888888999999985 6999999998888888777766654 3332  8888887777887


Q ss_pred             HHHhhhhcccccCCCCCC
Q 015916          185 VCLGAIFFLRETTPASTV  202 (398)
Q Consensus       185 i~~~~~~~l~~~p~~~~~  202 (398)
                      +.++..+++||.|++...
T Consensus       255 ~~~~~~~~~~esp~~l~~  272 (505)
T TIGR00898       255 LFFLLSWFVPESPRWLIS  272 (505)
T ss_pred             HHHHHHHhcCCChHHHHH
Confidence            777777888998877543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.81  E-value=2e-18  Score=169.18  Aligned_cols=246  Identities=12%  Similarity=0.041  Sum_probs=172.4

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      .+....|.+++++|.|..+.+++.+...++... .++.|++.||+|+|+++.++.++..++.+.+.+.       ++++.
T Consensus        23 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~   95 (385)
T TIGR00710        23 MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNIET   95 (385)
T ss_pred             HhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHH
Confidence            344556889999999999999987777777765 7999999999999999999999999988887764       46788


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  189 (398)
                      +++.+++.|++.+...++....+.+++|+ +|+++.|+......+|..+.+.+...+.+                     
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------------------  154 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV---------------------  154 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            88899999999998888888889999985 69999999999999999888888776543                     


Q ss_pred             hhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccccc
Q 015916          190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN  269 (398)
Q Consensus       190 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~  269 (398)
                                       ..+|+..+...+.+...                           ..... ...   .++    
T Consensus       155 -----------------~~~~~~~~~~~~~~~~~---------------------------~~~~~-~~~---~~~----  182 (385)
T TIGR00710       155 -----------------WLSWHAIFAFLSLAGIL---------------------------LSALI-FFI---LPE----  182 (385)
T ss_pred             -----------------HcCHHHHHHHHHHHHHH---------------------------HHHHH-HHh---CCC----
Confidence                             23454433211110000                           00000 000   010    


Q ss_pred             ccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhccccee
Q 015916          270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL  349 (398)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~  349 (398)
                      .++.        ++++                  ++++             ...+.++.+|++++|.+.+...+......
T Consensus       183 ~~~~--------~~~~------------------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (385)
T TIGR00710       183 TLPY--------EARI------------------QIST-------------YFETFLLLLKSKMFWGYALIYGASFGGFF  223 (385)
T ss_pred             CCCC--------cccC------------------CHHH-------------HHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            0000        0000                  0000             01235778899999988776655544444


Q ss_pred             eeeechHHHHH-HhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          350 AVMNNMGQIGL-ALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       350 ~~~~n~~~i~~-~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ......+.+.+ +.|.++  .....+..++...+|+++.|+++||+++|+
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  273 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS  273 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            44455566665 567763  556778889999999999999999999876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=1.3e-18  Score=169.38  Aligned_cols=243  Identities=12%  Similarity=0.037  Sum_probs=172.5

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+++...|++++++|+|.++.+++.+...++..+ +++.|++.||+|+|+++.++.++..++.+.. ..       ++.+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-------~~~~   88 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-------PGTA   88 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-------ccHH
Confidence            4567788999999999999999987777777765 8999999999999999999998888777655 22       3567


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  189 (398)
                      .+.+.|++.|+|.+.........+.+++|++|+++.|+...+.++|..+.+.+...+.+..                   
T Consensus        89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-------------------  149 (355)
T TIGR00896        89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHS-------------------  149 (355)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence            7778899999999877666667788999999999999999999999888887766553210                   


Q ss_pred             hhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccccc
Q 015916          190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN  269 (398)
Q Consensus       190 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~  269 (398)
                                       ..+||..+.....+.+                            +.....++     + . + 
T Consensus       150 -----------------~~~w~~~f~~~~~~~~----------------------------~~~~~~~~-----~-~-~-  176 (355)
T TIGR00896       150 -----------------GGHWQQALAWWALPAL----------------------------LALLAWIP-----Q-V-R-  176 (355)
T ss_pred             -----------------hhhHHHHHHHHHHHHH----------------------------HHHHHHhh-----h-h-c-
Confidence                             1235544322211000                            00000001     0 0 0 


Q ss_pred             ccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhccccee
Q 015916          270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL  349 (398)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~  349 (398)
                      ++           .++                   +++      .      ...+.++++|++.+|.+.+..++......
T Consensus       177 ~~-----------~~~-------------------~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (355)
T TIGR00896       177 RR-----------VAA-------------------NQT------T------TRLTPVRIWRSPLAWQVTVFFGLQSGLYY  214 (355)
T ss_pred             cc-----------cCC-------------------CCC------C------CCCCCchhhcCHhHHHHHHHHHHHHHHHH
Confidence            00           000                   000      0      01124578899999988776666655656


Q ss_pred             eeeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          350 AVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       350 ~~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      .+.+.++.+.++.|.+.  .....+++.++..+||++.|+++||+++|
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            66778888998888863  56788999999999999999999999543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.81  E-value=1.6e-18  Score=172.78  Aligned_cols=279  Identities=12%  Similarity=0.065  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHH-HHhcccccccccHHHHHH-HcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           14 WLGFVTAVWVQ-AISGNNYTFSNYSDALKT-LMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        14 w~~l~~~~~~~-~~~g~~~~~s~~~~~l~~-~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      |+.+..+.+.. .+...-+.++...+.+.+ ++|+|++|.+++.+...++. +..++.|++.||+|+|+++.++.++..+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            45555555543 233345677777788765 89999999999655555554 4568889999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      ..+..+++..+..  ++++.+++.|++.|++ +..+.+....+.+|||+ +||++.|+..+...+|..+...+...+.. 
T Consensus       113 ~~~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~-  188 (462)
T PRK15034        113 PCVWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF-  188 (462)
T ss_pred             HHHHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence            9888876533222  4688999999999998 55778899999999996 59999999976656666655544332210 


Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHH
Q 015916          170 DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILII  249 (398)
Q Consensus       170 ~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (398)
                                     ..+...+--+..+....    ...+++........+.                            
T Consensus       189 ---------------~~l~~~~G~~~~~~~~g----~~~~~~~~~~~~~~~~----------------------------  221 (462)
T PRK15034        189 ---------------VPVFAFLGVNGVPQADG----SVMSLANAAWIWVPLL----------------------------  221 (462)
T ss_pred             ---------------HHHHHHhcccccccccc----chHHHHHHHHHHHHHH----------------------------
Confidence                           00000010001110000    1344554332111100                            


Q ss_pred             HHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHh
Q 015916          250 LLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAM  329 (398)
Q Consensus       250 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l  329 (398)
                      ++...+.+.    .. +   +.          ++.+                    .+              -...++.+
T Consensus       222 iv~~i~~~~----~~-~---~~----------~~~~--------------------~~--------------~~~~~~vl  249 (462)
T PRK15034        222 AIATIAAWS----GM-N---DI----------ASSR--------------------AS--------------IADQLPVL  249 (462)
T ss_pred             HHHHHHHHH----hC-C---Cc----------cccc--------------------cC--------------HHHHHHHh
Confidence            000000011    11 0   00          0000                    00              01246799


Q ss_pred             ccHhHHHHHHHHHhcccceeeeeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          330 WTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       330 ~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      |+|+.|++.+.+++..+...++.+.++.+.++ .+++  ......+..+...++|.++|+++||+++++
T Consensus       250 k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~  317 (462)
T PRK15034        250 QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR  317 (462)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence            99999999999999888888887788888766 3433  222345668889999999999999999886

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.81  E-value=1.6e-18  Score=176.45  Aligned_cols=143  Identities=15%  Similarity=0.003  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhh-HHHH-----HHHHHhhhhh-hhhhhhhhcccCchHHHHHHH
Q 015916           14 WLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLE-LNNL-----SVVKDIGKAF-GLLAGLASDRIPAPIILLIGS   85 (398)
Q Consensus        14 w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~-~~~i-----~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~   85 (398)
                      +..+..+.+.....+. .+.++...|.+.++++.+..+ .+++     .....++..+ +++.|++.||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3444444444444443 345566778888888644322 1221     2334455554 789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCchHH--------HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhH
Q 015916           86 LEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLST  156 (398)
Q Consensus        86 ~~~~ig~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~  156 (398)
                      ++++++.++++++       ++++        +++++|+++|+|.|..+++...++.+|+| ++||++.++...+..+|.
T Consensus        95 ~l~~i~~~~~a~~-------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642         95 VIMSISTFCIGLI-------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            9999999998875       3443        36678999999999988899999999998 579999999987777776


Q ss_pred             HHHHHHH
Q 015916          157 AIFTDLC  163 (398)
Q Consensus       157 ~i~~~l~  163 (398)
                      .+.+.+.
T Consensus       168 ~lg~~~~  174 (490)
T PRK10642        168 VLGAGVV  174 (490)
T ss_pred             HHHHHHH
Confidence            6655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.80  E-value=6.8e-19  Score=168.88  Aligned_cols=272  Identities=15%  Similarity=0.041  Sum_probs=187.5

Q ss_pred             CCCcHHHHHHHHHHH-HHhcccccccccHHHHHHHcCCChhhHHHH-HHHHHhhhhhhhhhhhhhcccCchHHHHHHHHH
Q 015916           10 SAGKWLGFVTAVWVQ-AISGNNYTFSNYSDALKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIPAPIILLIGSLE   87 (398)
Q Consensus        10 ~~~~w~~l~~~~~~~-~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~   87 (398)
                      ++.+++.+..+.+.. .+...-+.++...+.+++++|+|..|.+++ .+....|.+.=++.|.+.||||+|++..++.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            344566666666653 233344677888888999999999999995 555555667789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus        88 ~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      ..+-.+..+++...    +++|++.+.+++.|++.+. +...+..+++|||| ++|.|+|+.- ..++|.++...+...+
T Consensus        89 ~~IP~~~~~~a~~~----~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          89 LLIPCLGLAFAVTY----PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHccC----CchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            99988888876443    4578999999999987764 46788899999996 5899999998 4567766654443332


Q ss_pred             cCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          167 FADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      .....                                   ...|+........ .++                       
T Consensus       163 ~~~~g-----------------------------------~~~w~~~~~i~~~-~l~-----------------------  183 (417)
T COG2223         163 AVAFG-----------------------------------FLAWRNVAGIYVV-ALA-----------------------  183 (417)
T ss_pred             HHHHh-----------------------------------hHHHHHHHHHHHH-HHH-----------------------
Confidence            21000                                   0124432211110 000                       


Q ss_pred             HHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHH
Q 015916          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF  326 (398)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~  326 (398)
                          +..-+.+..   .+ +.   |          +.++   +               .+       +     .+....+
T Consensus       184 ----v~~v~~~~~---~~-d~---p----------~~r~---~---------------~~-------~-----~~~~~~~  212 (417)
T COG2223         184 ----IAAVLAWLG---MN-DV---P----------EHRA---S---------------VK-------P-----QLPAQLK  212 (417)
T ss_pred             ----HHHHHHHHH---hC-CC---h----------hhhc---c---------------cc-------c-----cchhHHH
Confidence                000000110   11 10   0          0011   0               00       0     0013357


Q ss_pred             HHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh-CCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHhc
Q 015916          327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMVH  397 (398)
Q Consensus       327 ~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~-g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~~  397 (398)
                      .+.|+++-|.+.+.++...|.-.++.+.++.++++. |.+  ++.....++...+.+-|.++|+++||++.++.
T Consensus       213 ~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         213 AVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            788899999999999999999999999999988875 666  35589999999999999999999999998763

>PRK10504 putative transporter; Provisional

Probab=99.80  E-value=1.6e-17  Score=168.09  Aligned_cols=153  Identities=12%  Similarity=0.023  Sum_probs=124.1

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.++...|.+.+++|++..+.+++.+...++.. ..++.|++.||+|+|++++.+.++.+++.+...+.       ++++
T Consensus        27 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~   99 (471)
T PRK10504         27 TIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-------GTLN   99 (471)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------CCHH
Confidence            445567788999999999999997777777765 47999999999999999999998888888776553       4677


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  188 (398)
                      .+.+.|++.|++.+...+.....+.+++|+ +|+.+.|+......+|..+.+.+...+.+...|++.+.+......+..+
T Consensus       100 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~  179 (471)
T PRK10504        100 ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAI  179 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            888899999999998777777888999985 6999999999999999999999988887776788777666544444443


Q ss_pred             hh
Q 015916          189 AI  190 (398)
Q Consensus       189 ~~  190 (398)
                      ..
T Consensus       180 ~~  181 (471)
T PRK10504        180 AT  181 (471)
T ss_pred             HH
Confidence            33

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.79  E-value=3.7e-18  Score=172.82  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=123.7

Q ss_pred             cccHHHHHHHc--------CCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHh---c
Q 015916           34 SNYSDALKTLM--------NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS---R  101 (398)
Q Consensus        34 s~~~~~l~~~~--------g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~---~  101 (398)
                      +...|.+++++        +++..+.+++.+...++..+ +++.|++.||+|||++++++.+++.++.+..++...   .
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~  111 (479)
T PRK10077         32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS  111 (479)
T ss_pred             hHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            33445577766        89999999987777888865 799999999999999999999999888877664210   0


Q ss_pred             c-cCC-chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc--------CCC
Q 015916          102 K-IQP-LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF--------ADD  170 (398)
Q Consensus       102 ~-~~~-~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~--------~~~  170 (398)
                      . .++ ..++.++++|++.|++.|..++....++.+|+|+ +||+++|+...+..+|..+.+.+...+.        +..
T Consensus       112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        112 IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            0 001 2245567899999999999888899999999985 6999999999998899887655443322        223


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 015916          171 PAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       171 ~~~~~~~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      .|++.+.+..++.++.++..+++||.|++
T Consensus       192 gWr~~f~~~~~~~~~~~~~~~~l~~s~~~  220 (479)
T PRK10077        192 GWRYMFASEAIPALLFLMLLYFVPETPRY  220 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence            57777776666666666666677776654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.79  E-value=7.3e-18  Score=166.06  Aligned_cols=131  Identities=11%  Similarity=0.035  Sum_probs=111.5

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +......|.+++++|++.++.+++.+...++..+ .++.|++.||+|+|+++.++.++.+++.+++.++       ++++
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~~   92 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSYL   92 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence            3445577889999999999999987777788765 7999999999999999999999999998887764       5788


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      .+++.|++.|++.+.........+.+++|+ +|++++|+...+..+|..+.+++...+.+
T Consensus        93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            999999999999887766666778899986 69999999999999999988888766543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=2.2e-17  Score=159.82  Aligned_cols=267  Identities=13%  Similarity=0.105  Sum_probs=202.9

Q ss_pred             CCCCCCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHH
Q 015916            7 YTSSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIG   84 (398)
Q Consensus         7 ~~~~~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g   84 (398)
                      ++..++.|..+..-.+..++.|+ -+.-.-..|++.+++|.|..+.++..+.+..+.. .+|+...+.||+.||++++..
T Consensus         5 ~~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~   84 (394)
T COG2814           5 ATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGL   84 (394)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHH
Confidence            34444556655554455555555 3555667899999999999999996666666665 589999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHH
Q 015916           85 SLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC  163 (398)
Q Consensus        85 ~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~  163 (398)
                      .+++.++-++.+++       ++++.+.+.|++.|+..|...........+.-|+ ||++|+++..++..++..+..|+.
T Consensus        85 l~lFi~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG  157 (394)
T COG2814          85 LALFIVSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG  157 (394)
T ss_pred             HHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence            99999999999886       6899999999999999998888888889999984 799999999999999999998887


Q ss_pred             HhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHH
Q 015916          164 SALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIF  243 (398)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (398)
                      ..+=+                                      ..+||..+.....+.++..+...              
T Consensus       158 t~ig~--------------------------------------~~GWR~~F~~ia~l~ll~~~~~~--------------  185 (394)
T COG2814         158 TFLGQ--------------------------------------LFGWRATFLAIAVLALLALLLLW--------------  185 (394)
T ss_pred             HHHHH--------------------------------------HhhHHHHHHHHHHHHHHHHHHHH--------------
Confidence            76522                                      57888876544433222221110              


Q ss_pred             HHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcc
Q 015916          244 SGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDH  323 (398)
Q Consensus       244 ~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  323 (398)
                             ...|                |++.        .++                            .    ..+-.
T Consensus       186 -------~~lP----------------~~~~--------~~~----------------------------~----~~~~~  202 (394)
T COG2814         186 -------KLLP----------------PSEI--------SGS----------------------------L----PGPLR  202 (394)
T ss_pred             -------HhCC----------------CccC--------CCC----------------------------C----Ccchh
Confidence                   0000                0000        000                            0    00112


Q ss_pred             hHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh-CCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       324 t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~-g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +..+.+|+|+.|...+..++..+...+..+.+.+++++. |.+  +.++..-+++++..+|-++.|.++|| +.|+
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~  277 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR  277 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh
Confidence            357899999999999999999999999999999999987 555  36678899999999999999999999 5544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.5e-17  Score=162.91  Aligned_cols=275  Identities=16%  Similarity=0.112  Sum_probs=190.2

Q ss_pred             HHHHHcC--CChhhHHH----HHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           39 ALKTLMN--LTQLELNN----LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        39 ~l~~~~g--~s~~~~~~----i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      .+.+++|  .+..+..+    +.+...+|.++ +...|++.||+|||..+.++.++..++.+.+.++...    +++..+
T Consensus        44 t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----~~~e~l  119 (485)
T KOG0569|consen   44 TLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----PSFEML  119 (485)
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----hhHHHH
Confidence            3445666  44444433    35555667766 6899999999999999999999998888887765332    467788


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHh-HcC-CChhHHHHHHHHHHHHHHHh
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSA-LFA-DDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~-~~~-~~~~~~~~~~~~~~~~i~~~  188 (398)
                      .++|++.|+..|........++.|.-|++ ||....+...+..+|-.+...+... ++. ++.|.+++....+++++.++
T Consensus       120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  120 ILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence            88999999999988888888899999975 9999999999988887777554433 444 36699999999999999999


Q ss_pred             hhhcccccCCCCCC-chhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccc
Q 015916          189 AIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (398)
Q Consensus       189 ~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (398)
                      ..+++||.|+++.. +++.+++.+....                                               ++.. 
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~-----------------------------------------------y~G~-  231 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALKF-----------------------------------------------YRGK-  231 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHHH-----------------------------------------------HhCC-
Confidence            99999999998754 3333333321000                                               2210 


Q ss_pred             ccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHh----HHHHHHHHHh
Q 015916          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVD----FWILFVSFLC  343 (398)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~----Fw~l~~~~~~  343 (398)
                             .|++++++...              +    |.+      +++...+++.|.+|++|+++    .++.....++
T Consensus       232 -------~~~~~~~e~~~--------------~----e~~------~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~  280 (485)
T KOG0569|consen  232 -------EDVEAEIEEML--------------R----EIE------EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFA  280 (485)
T ss_pred             -------CcchhHHHHHH--------------H----HHH------HhccccccCCcHHHHhcCcchhHHHHHHHHHHHH
Confidence                   00001001000              0    000      00011224678899998753    3344444455


Q ss_pred             cccceee-eeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          344 GVGTGLA-VMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       344 ~~~~g~~-~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ....|.. +......|.++.|.++  +.......++.|.+..++..++.||+|||.
T Consensus       281 qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp  336 (485)
T KOG0569|consen  281 QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP  336 (485)
T ss_pred             HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            5555555 4444556888899874  566778899999999999999999999985

>PRK11043 putative transporter; Provisional

Probab=99.78  E-value=1.5e-17  Score=164.69  Aligned_cols=242  Identities=16%  Similarity=0.059  Sum_probs=166.3

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      .+....|++++++|++.++.+++.+...++..+ +++.|++.||+|+|+++..+.++..++.+++.+.       ++++.
T Consensus        24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~   96 (401)
T PRK11043         24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------ESAAQ   96 (401)
T ss_pred             HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------cCHHH
Confidence            333445667899999999999987777777765 7999999999999999999999988888877654       46788


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  189 (398)
                      +++.|++.|++.+.........+.+++|+ +|+.+.+......++++.+.+.+...+.+                     
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---------------------  155 (401)
T PRK11043         97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN---------------------  155 (401)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            88899999998876666666778899986 57888888888888888888888776544                     


Q ss_pred             hhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccccc
Q 015916          190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN  269 (398)
Q Consensus       190 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~  269 (398)
                                       ..+||..+.....+.+.                           ...+ ...    +++    
T Consensus       156 -----------------~~g~~~~~~~~~~~~~~---------------------------~~~~-~~~----~~~----  182 (401)
T PRK11043        156 -----------------HFGWQAIFATLFAITLL---------------------------LILP-TLR----LKP----  182 (401)
T ss_pred             -----------------cCChHHHHHHHHHHHHH---------------------------HHHH-HHH----cCC----
Confidence                             23455433211110000                           0000 000    110    


Q ss_pred             ccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhccccee
Q 015916          270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL  349 (398)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~  349 (398)
                      ++           .++   +               ++       +      +..+.++.+|++++|...+...+......
T Consensus       183 ~~-----------~~~---~---------------~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
T PRK11043        183 SK-----------KAR---K---------------QS-------Q------DALTFKQLLKSKTYLGNVLIFAACSAAFF  220 (401)
T ss_pred             CC-----------Ccc---c---------------cc-------h------HHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            00           000   0               00       0      01346788999999877665555444444


Q ss_pred             eeeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          350 AVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       350 ~~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+.+..+.+.++.|++.  .........++..+|+++.+++.||+++|+
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~  269 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ  269 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            45566777788888874  445556677888999999999999998775

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.78  E-value=2e-17  Score=164.68  Aligned_cols=277  Identities=11%  Similarity=0.045  Sum_probs=183.2

Q ss_pred             HHhcccccc-cccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 015916           25 AISGNNYTF-SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK  102 (398)
Q Consensus        25 ~~~g~~~~~-s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~  102 (398)
                      +..|..+.. +...|.+++++|+|..|.+++.+...++..+ +++.|++.||+|+|+++.+|.++++++.+++..+... 
T Consensus        13 ~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-   91 (410)
T TIGR00885        13 ALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-   91 (410)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            344544333 5778999999999999999988888888765 8999999999999999999999999998876543211 


Q ss_pred             cCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCCh---hHHHHHH
Q 015916          103 IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP---AKFLFML  178 (398)
Q Consensus       103 ~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~---~~~~~~~  178 (398)
                         ++++.+++.+++.|.|.|...++....+.++.|+ +|++..++..+.+++|+.+.+.+...++....   .....  
T Consensus        92 ---~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~--  166 (410)
T TIGR00885        92 ---MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL--  166 (410)
T ss_pred             ---ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh--
Confidence               3678888899999999999888888888888885 58999999999999999999888777643210   00000  


Q ss_pred             HHHHHHHHHhhhhcccccCCCCCC-chhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhh
Q 015916          179 AIVPFVVCLGAIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAI  257 (398)
Q Consensus       179 ~~~~~~i~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~  257 (398)
                                    .+..|..... .+....+||..+...+.+.++..                        ++.     
T Consensus       167 --------------~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~------------------------~~~-----  203 (410)
T TIGR00885       167 --------------DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA------------------------LLI-----  203 (410)
T ss_pred             --------------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHH-----
Confidence                          0000000000 00123457665533322111000                        000     


Q ss_pred             ccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHH
Q 015916          258 PVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWIL  337 (398)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l  337 (398)
                      .    +. +   .|+.+    +   +++                   +        +  ++.  ..+.++.+|+|++|..
T Consensus       204 ~----~~-~---~p~~~----~---~~~-------------------~--------~--~~~--~~~~~~~~~~~~~~~~  237 (410)
T TIGR00885       204 M----LT-K---MPALN----H---SDA-------------------K--------Q--ISF--SASLSRLARIRHYREG  237 (410)
T ss_pred             H----Hh-c---CCCCC----c---ccc-------------------c--------c--ccc--hhhHHHHHhChhHHHH
Confidence            0    01 0   11000    0   000                   0        0  000  0134578899999998


Q ss_pred             HHHHHhcccceeeeeechHHHHHHhCC--Cc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          338 FVSFLCGVGTGLAVMNNMGQIGLALGY--VD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       338 ~~~~~~~~~~g~~~~~n~~~i~~~~g~--~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+..++..+...+..++++.+.++.+.  ++  ++...+.+-....+||+++|++.||+++|+
T Consensus       238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~  300 (410)
T TIGR00885       238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK  300 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            888888878777777888888877643  22  344666666788999999999999998875

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.78  E-value=2.5e-17  Score=162.61  Aligned_cols=130  Identities=15%  Similarity=0.053  Sum_probs=108.5

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.+....|.+++++|.|..+.++..+...++... .++.|++.||+|||+.+.++.++..++.+.+...       ++++
T Consensus        20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~~~   92 (392)
T PRK10473         20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ETSS   92 (392)
T ss_pred             HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence            3444678999999999999999977777777755 7999999999999999999999999988887654       4577


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .+++.|++.|++.+..+......+.+++| ++|+++.|+......+|..+.+.+...+.
T Consensus        93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999988877778888999998 57999999999888888877777665543

>TIGR00897 2A0118 polyol permease family

Probab=99.77  E-value=3.4e-17  Score=162.51  Aligned_cols=249  Identities=12%  Similarity=0.009  Sum_probs=161.4

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~  114 (398)
                      +.+++.+++|+|.++.+++.+...++... .++.|++.||+|||+++..+.++..++.+++...  ... ..+++.+++.
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~~~  111 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF--GLG-HANYPLILLF  111 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hcc-CccHHHHHHH
Confidence            45667788999999999977777777654 8999999999999999999999998886654221  000 1356777788


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHH-HHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhc
Q 015916          115 LCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTA-IFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  192 (398)
                      |++.|+|.+.........+.+++| ++||+++|+..++.++|.. +.+.+...+.+...++                   
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~-------------------  172 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM-------------------  172 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH-------------------
Confidence            999999887665555666778876 6799999999999988864 4455544443311100                   


Q ss_pred             ccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccC
Q 015916          193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKR  272 (398)
Q Consensus       193 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~  272 (398)
                                    ...|+...  ..                            .   +...+...    +.++. ++++
T Consensus       173 --------------~~~~~~~~--~~----------------------------~---~~~~~~~~----~~~~~-~~~~  200 (402)
T TIGR00897       173 --------------NTLWSALA--FV----------------------------L---TGGVIALF----SNKDI-FTPQ  200 (402)
T ss_pred             --------------HHHHHHHH--HH----------------------------H---HHHHHHHh----ccCCC-CCcc
Confidence                          01121110  00                            0   00000000    11110 0010


Q ss_pred             CCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeee
Q 015916          273 TEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVM  352 (398)
Q Consensus       273 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~  352 (398)
                      .        .+++                   ++.      +   +.  ....++++|+|.+|...+..++......+..
T Consensus       201 ~--------~~~~-------------------~~~------~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (402)
T TIGR00897       201 H--------MQTR-------------------EKF------S---EL--GKAATILFTNPNVLLGGMVRIINTIGLFGFA  242 (402)
T ss_pred             c--------ccCC-------------------cch------h---hH--HHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence            0        0000                   000      0   00  1134678999999998877776655555667


Q ss_pred             echHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          353 NNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       353 ~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +..+.+.++.|++.  .....++..+++.+|+++.|+++||++||+
T Consensus       243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  288 (402)
T TIGR00897       243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN  288 (402)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            78888888888863  456777888999999999999999999875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.77  E-value=9e-17  Score=163.46  Aligned_cols=180  Identities=19%  Similarity=0.215  Sum_probs=140.5

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      +++|..+....+..+..+. .+..+...|.+++++|+|..+.+++.+...++... +++.|++.||+|+|+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3456655555554444443 34445677889999999999999976666777755 799999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +++.+++.+.       .+++.+++.+++.|++.+..+......+.+++|+ +|+++.++...+..+|..+.+.+...+.
T Consensus        96 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893         96 SVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887764       4688888899999999888888888889999985 6999999999999999999999988888


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcccccC
Q 015916          168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETT  197 (398)
Q Consensus       168 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p  197 (398)
                      +...|++.+.++.++.++.+.....+|+.+
T Consensus       169 ~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~  198 (496)
T PRK03893        169 PVWGWRALFFIGILPIIFALWLRKNLPEAE  198 (496)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            777788877776666555444433444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.77  E-value=2.2e-17  Score=163.77  Aligned_cols=129  Identities=16%  Similarity=0.083  Sum_probs=104.9

Q ss_pred             ccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        33 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      +....|++++++|+|..+.++..+...++..+ .++.|++.||+|+|+++.++.++..++.+...+.       ++++.+
T Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l  104 (406)
T PRK15402         32 IQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------QSIEQF  104 (406)
T ss_pred             HhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------ccHHHH
Confidence            33455778899999999999976777777755 7999999999999999999999999888877654       467788


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++.|++.|++.+.........+.+++|+ +|+++.++......++..+.+.+...+.+
T Consensus       105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  162 (406)
T PRK15402        105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH  162 (406)
T ss_pred             HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999998887666777888999986 58888998888777887777777665543

>PRK10133 L-fucose transporter; Provisional

Probab=99.77  E-value=4.6e-17  Score=163.42  Aligned_cols=149  Identities=11%  Similarity=0.044  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHH
Q 015916           14 WLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVG   91 (398)
Q Consensus        14 w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig   91 (398)
                      +..++..+++.+..+. ....+.+.|.+++++|+|..+.++..+...++..+ +++.|++.||+|+|+++.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3333333333333443 34556788999999999999999987777788765 899999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916           92 YGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      .+++.....    +++++.+++.|+++|+|.+...++....+.++.|++ |+..+++.++.+++|..+.+.+...+
T Consensus       105 ~~l~~~~~~----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        105 AALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987642211    146888889999999999998888888888887765 55689999999999998888776554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.77  E-value=1.4e-17  Score=161.28  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=108.3

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      ...|.+..+++.+..+.+++.+...++..+ .++.|++.||+|||+++.++.++..++.++..+.....  +.+++.+++
T Consensus        20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   97 (365)
T TIGR00900        20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG--GLNIWQVYV   97 (365)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHH
Confidence            344567778899999999987777777754 89999999999999999999998888877766542110  126888888


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      .+++.|++.+...++....+.+++|+ +|+++.|+...+.++|..+.+.+...+.+
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  153 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA  153 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998878888889999985 69999999999999999988888776543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.76  E-value=4.5e-17  Score=163.26  Aligned_cols=146  Identities=13%  Similarity=-0.012  Sum_probs=106.8

Q ss_pred             CcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHH-HHHHHHhhh-----h-hhhhhhhhhcccCchHHHHH
Q 015916           12 GKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNN-LSVVKDIGK-----A-FGLLAGLASDRIPAPIILLI   83 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~-i~~~~~~~~-----~-~~~~~G~l~Dr~G~r~~~~~   83 (398)
                      .||+.....++..+.... ...++...|.++++++.+..+.+. ..+....+.     . .+++.|++.||+|||++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            355554444444444333 356778899999999998877654 332222221     2 25788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCchHH--------HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhh
Q 015916           84 GSLEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL  154 (398)
Q Consensus        84 g~~~~~ig~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~gl  154 (398)
                      +.++..++.++++++       ++++        .++++|++.|++.+.........+.+|+|+ +||+++++...+..+
T Consensus        92 ~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~  164 (434)
T PRK15075         92 TLSIMASGTLLIAFV-------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV  164 (434)
T ss_pred             HHHHHHHHHHHHHhC-------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence            999999998888764       3444        356789999999988777777889999984 699999999888777


Q ss_pred             hHHHHHHHHH
Q 015916          155 STAIFTDLCS  164 (398)
Q Consensus       155 g~~i~~~l~~  164 (398)
                      |..+.+.+..
T Consensus       165 g~~~g~~~g~  174 (434)
T PRK15075        165 AVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHH
Confidence            7666655543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.75  E-value=1.1e-17  Score=161.52  Aligned_cols=129  Identities=22%  Similarity=0.230  Sum_probs=108.6

Q ss_pred             ccccHH-HHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           33 FSNYSD-ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        33 ~s~~~~-~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      +....| .+++++|+|..+++++.+...++.. .+++.|++.||+|+|+++.++.++.+++.++..++       ++.+.
T Consensus        15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~   87 (352)
T PF07690_consen   15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWL   87 (352)
T ss_dssp             HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHH
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHH
Confidence            344556 7889999999999997777777765 48999999999999999999999999995555543       35667


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +++.+++.|++.+.........+.+++|+ +|+++.|+...+.++|..+.+.+...+.+
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  146 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS  146 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence            77899999999988888899999999996 79999999999999999999888877653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.75  E-value=5.7e-17  Score=158.82  Aligned_cols=129  Identities=11%  Similarity=0.031  Sum_probs=109.2

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      .+....|.+.+++|+|..+.+++.+...++... .++.|++.||+|||+++..+.++..++.+.+.+.       ++++.
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~~   81 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTIDQ   81 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHH
Confidence            344567888899999999999977777777755 7999999999999999999999999998887764       46777


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +++.+++.|++.+.........+.+++|+ +|+++.++...+..+|..+.+.+...+.
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999887777778889999985 6999999999999999888888776554

>PRK09952 shikimate transporter; Provisional

Probab=99.75  E-value=9.6e-17  Score=161.13  Aligned_cols=146  Identities=10%  Similarity=0.051  Sum_probs=105.1

Q ss_pred             CcHHHHHHHHHHHHHhcc-cccccccHHH-HHHHc--CCChhhHHHHHH-----HHHhhhhh-hhhhhhhhcccCchHHH
Q 015916           12 GKWLGFVTAVWVQAISGN-NYTFSNYSDA-LKTLM--NLTQLELNNLSV-----VKDIGKAF-GLLAGLASDRIPAPIIL   81 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~-~~~~s~~~~~-l~~~~--g~s~~~~~~i~~-----~~~~~~~~-~~~~G~l~Dr~G~r~~~   81 (398)
                      ++|..+..+++...+.+. ...++...|. +.+++  +.++. .+++..     ...++..+ +++.|++.||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            445555555555444443 3455556664 45555  67766 344322     22233433 68899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchHH--------HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhh
Q 015916           82 LIGSLEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYV  152 (398)
Q Consensus        82 ~~g~~~~~ig~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~  152 (398)
                      .++.++++++.++++++       ++++        .+.++|+++|++.|..+.....++.||+|+ +||+..+....+.
T Consensus        98 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~  170 (438)
T PRK09952         98 MLTVWMMGIATALIGLL-------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY  170 (438)
T ss_pred             HHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence            99999999998888764       3443        466789999999998888888899999985 6999999999998


Q ss_pred             hhhHHHHHHHHHh
Q 015916          153 GLSTAIFTDLCSA  165 (398)
Q Consensus       153 glg~~i~~~l~~~  165 (398)
                      .+|..+...+...
T Consensus       171 ~~G~~l~~~~~~~  183 (438)
T PRK09952        171 GVGLLLSTGLVSL  183 (438)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.74  E-value=1.4e-16  Score=156.77  Aligned_cols=129  Identities=19%  Similarity=0.145  Sum_probs=108.2

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      ....+.|.+++++|+|..+++++.+...++..+ .++.|++.||+|+|+++.++.++..++.+...+.       ++++.
T Consensus        24 ~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~~   96 (381)
T PRK03633         24 VLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------VGFWS   96 (381)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHH
Confidence            345678889999999999999987877888765 7999999999999999999999999988877654       46888


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +.+.|++.|++.+...+.....+.++.| ++||++.|+...+..+|..+.+.+...+.
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8889999999998766555556666665 57999999999999999998888876654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.74  E-value=4.2e-17  Score=163.51  Aligned_cols=253  Identities=12%  Similarity=0.109  Sum_probs=186.5

Q ss_pred             HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHh
Q 015916           41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (398)
Q Consensus        41 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (398)
                      +.+++|+..|-+++.+....|.++ .+++|+++||+|.|+++..+.++.+++.++.-.+..     .+++.+++.|+++|
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQG  139 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhH
Confidence            457999999999988888899977 689999999999999999999999999988876643     34566677999999


Q ss_pred             hhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHH-HHHHHHhhhhccccc
Q 015916          120 NSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIV-PFVVCLGAIFFLRET  196 (398)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~-~~~i~~~~~~~l~~~  196 (398)
                      ++.|..+++.....++|.| ++|++..+++.++..+|..+.-++.+.+.+. .+|+..+++... ..+..++..++.++.
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~  219 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS  219 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999998888888999998 5799999999999999999999998888765 334333332222 222222222222333


Q ss_pred             CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccCCCCC
Q 015916          197 TPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPD  276 (398)
Q Consensus       197 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~  276 (398)
                      |.+                                                                          ++.
T Consensus       220 P~~--------------------------------------------------------------------------h~~  225 (466)
T KOG2532|consen  220 PSK--------------------------------------------------------------------------HPN  225 (466)
T ss_pred             ccc--------------------------------------------------------------------------CCC
Confidence            322                                                                          111


Q ss_pred             cchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeeeechH
Q 015916          277 VEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMG  356 (398)
Q Consensus       277 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~  356 (398)
                      +.++|. +-              -    +.+  ..  ++....+....++++++++.+|.++++.++........+..+|
T Consensus       226 is~~El-~~--------------I----~~~--k~--~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~P  282 (466)
T KOG2532|consen  226 ISEKEL-KY--------------I----EKG--KS--EAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLP  282 (466)
T ss_pred             CCHHHH-HH--------------H----Hhc--cc--ccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            100000 00              0    000  00  0000111356789999999999999999999888888999999


Q ss_pred             HHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          357 QIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       357 ~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      .+.++ ++++  +.+.+.++=-+...+-++++|.++||+.+|
T Consensus       283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~  324 (466)
T KOG2532|consen  283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR  324 (466)
T ss_pred             HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            98887 4765  577888999999999999999999999885

>PRK12382 putative transporter; Provisional

Probab=99.74  E-value=2.6e-16  Score=155.30  Aligned_cols=164  Identities=13%  Similarity=-0.031  Sum_probs=113.9

Q ss_pred             cccCCCCCCcHHHHHHHHHHHH-Hh--cccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchH
Q 015916            4 EVSYTSSAGKWLGFVTAVWVQA-IS--GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPI   79 (398)
Q Consensus         4 ~~~~~~~~~~w~~l~~~~~~~~-~~--g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~   79 (398)
                      .+|.|+.+++|........... ..  +.....+.....+++++|+|..+++++.+...++..+ +++.|++.||+|||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~   82 (392)
T PRK12382          3 AVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKR   82 (392)
T ss_pred             ccccCcCCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchH
Confidence            3577777776654433333221 11  1111222232346889999999999977777777754 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-cccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHH
Q 015916           80 ILLIGSLEGLVGYGAQWLVVS-RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTA  157 (398)
Q Consensus        80 ~~~~g~~~~~ig~~~~~~~~~-~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~  157 (398)
                      ++.++.+...++.+....... ......+++.+++.|++.|++.+...++....+.+++| ++|++++|+...+..+|..
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~  162 (392)
T PRK12382         83 SALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA  162 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH
Confidence            999998877765443222100 00001357778889999999998777777778889998 5799999999888888888


Q ss_pred             HHHHHHHhHc
Q 015916          158 IFTDLCSALF  167 (398)
Q Consensus       158 i~~~l~~~~~  167 (398)
                      +.+++...+.
T Consensus       163 ~g~~~~~~l~  172 (392)
T PRK12382        163 AGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHHHH
Confidence            8887766554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.73  E-value=3.1e-16  Score=155.07  Aligned_cols=131  Identities=12%  Similarity=-0.012  Sum_probs=102.2

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHh-cccCCchHHHHHHHH
Q 015916           38 DALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS-RKIQPLSYWQMCVFL  115 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~-~~~~~~~~~~l~~~~  115 (398)
                      ..+++++|+|..+++++.+...++..+ +++.|++.||+|||+++..+.++.+++...+.+... +.....+++.+++.|
T Consensus        40 ~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  119 (399)
T PRK05122         40 GYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGR  119 (399)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Confidence            346889999999999987777777754 899999999999999999999988877665544321 100012456677899


Q ss_pred             HHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          116 CMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++.|++.+.........+.+++| ++|+++.|+...+..+|..+.+++...+.+
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999877777777888887 579999999888888887777777766543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.69  E-value=2.1e-15  Score=146.78  Aligned_cols=129  Identities=11%  Similarity=-0.095  Sum_probs=95.9

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhccc-----CchHHH-HHHHHHHHHHHHHHHHHHhcccCCch
Q 015916           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~-----G~r~~~-~~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      +...|.+.+++|+|.+|+++........ ...++.|++.||+     ||||.+ +.+.++.++....+++...    ..+
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----~~~   82 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLVGLPY-SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----STD   82 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----chh
Confidence            3456778899999999999976553333 3489999999998     899974 5666666666655554311    134


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      ++.+....++.+...+....+....+.+++| ++|+++.|+...+..+|..+.+.+...+.
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666666666677777666777888999997 57999999999999999888888776554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.68  E-value=2.8e-15  Score=146.36  Aligned_cols=124  Identities=15%  Similarity=0.040  Sum_probs=87.7

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHH-HHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Q 015916           38 DALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLI-GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFL  115 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~-g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~  115 (398)
                      +.+++++|+|..+++++.+...+.. +.+++.|++.||+|+|+.+++ +.+...++.++.+++       ++++.+++.+
T Consensus        22 ~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~   94 (375)
T TIGR00899        22 LFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-------RNYFLLLVLG   94 (375)
T ss_pred             HHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-------chHHHHHHHH
Confidence            3468899999999999766666655 458999999999999987665 444445555555543       4677777778


Q ss_pred             HHHhhhhhhhhhHHHHHHHHhhcc-CCcch--HHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          116 CMGGNSTTWMNTAVLVTCIRNFRR-NRGPV--SGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a--~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++.|.+.+...+.......++.|+ +|+.+  .++...+.++|..+.+++...+.+
T Consensus        95 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  150 (375)
T TIGR00899        95 VLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL  150 (375)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence            777766555444445556677764 35544  577777788898888888776643

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.68  E-value=3.4e-15  Score=148.78  Aligned_cols=130  Identities=19%  Similarity=0.091  Sum_probs=106.2

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      ..+..-.|.+.++++.+..+.++..+...++.. ..++.|++.||+|||++++.+.++..++.+.+.++       ++++
T Consensus        33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~  105 (413)
T PRK15403         33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TSMT  105 (413)
T ss_pred             HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CCHH
Confidence            344445677899999999999996666667665 47999999999999999999999999888877654       5688


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .+++.|+++|++.+.........+.+++|+ +|++++++......+|..+.+.+...+.
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999998886555666778899985 5899999999999999888877765544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.68  E-value=4.6e-15  Score=146.55  Aligned_cols=130  Identities=12%  Similarity=0.035  Sum_probs=105.6

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.+....|++.+++|+|..+.+++.+...++..+ .++.|++.||+|||+++.++.++..++.+...+.       ++++
T Consensus        25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~   97 (394)
T PRK11652         25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSLT   97 (394)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence            3444556888999999999999977777777765 7999999999999999999999998888877653       4678


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .+++.|++.|++.+...........++++ ++|+.+.++...+..++..+.+.+...+.
T Consensus        98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999888766666667778887 46899999988888888878777766554

>PRK10054 putative transporter; Provisional

Probab=99.67  E-value=1.5e-15  Score=150.37  Aligned_cols=151  Identities=12%  Similarity=0.065  Sum_probs=107.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHH
Q 015916            8 TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSL   86 (398)
Q Consensus         8 ~~~~~~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~   86 (398)
                      +.+++.|..++..++...  +....++.+.+.+++++|+|..+++++.+...+... ..++.|++.||+|+|+++.++.+
T Consensus         4 ~~~~~~~~l~~~~~~~~~--g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~   81 (395)
T PRK10054          4 SLRRSTSALLASSLLLTI--GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAIT   81 (395)
T ss_pred             CCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHH
Confidence            444444544443333322  222233445556788999999999997666666554 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916           87 EGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus        87 ~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      ...++++...+.       ++++.+++.+.+.|.+.+...........+.+|+ +|+++.|+......+|.++.+.+...
T Consensus        82 ~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054         82 AFASGFIAIPLV-------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877654       4566666667676665554444455556677764 69999999999999999999888766


Q ss_pred             Hc
Q 015916          166 LF  167 (398)
Q Consensus       166 ~~  167 (398)
                      +.
T Consensus       155 l~  156 (395)
T PRK10054        155 LV  156 (395)
T ss_pred             HH
Confidence            53

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.67  E-value=1.9e-15  Score=147.77  Aligned_cols=128  Identities=13%  Similarity=-0.018  Sum_probs=93.9

Q ss_pred             ccccccHHHHHHHcC--CChhhHHHHHHHHH-----hhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 015916           31 YTFSNYSDALKTLMN--LTQLELNNLSVVKD-----IGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK  102 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g--~s~~~~~~i~~~~~-----~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~  102 (398)
                      +.++...+.+.+++.  .++.+.+...+...     ++.. .+++.|++.||+|||+++.++.++..++.+++.+.    
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----   85 (394)
T TIGR00883        10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL----   85 (394)
T ss_pred             HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC----
Confidence            445556666766654  44555555322221     2222 36899999999999999999999999998887764    


Q ss_pred             cCCchH--------HHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916          103 IQPLSY--------WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus       103 ~~~~~~--------~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                         +++        +.+++.|++.|++.+.........+.+++| ++||++.++...+..+|..+.+.+...
T Consensus        86 ---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  154 (394)
T TIGR00883        86 ---PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL  154 (394)
T ss_pred             ---CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence               222        235668999999998877778888999998 479999999999988888887766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=3.8e-15  Score=152.61  Aligned_cols=263  Identities=18%  Similarity=0.112  Sum_probs=186.2

Q ss_pred             hhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhh
Q 015916           49 LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT  127 (398)
Q Consensus        49 ~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~  127 (398)
                      .+.+++.+...++... ++++|++.|++|||++++++.+++.+|.++++++       .+++.+.++|++.|+|.|....
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhh
Confidence            3457888888888865 7999999999999999999999999999999886       5788999999999999999888


Q ss_pred             HHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCC--hhHHHHHHHHHHHHHHHhhhhcccccCCCCCCch
Q 015916          128 AVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE  204 (398)
Q Consensus       128 ~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~  204 (398)
                      ....++++.-|+ .||...++......+|..+. .+.+...++.  .|+..+.++.+|+++..++.+++||.|+++...+
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g  240 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG  240 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC
Confidence            888889999996 59999999999988665554 6666666554  7999999999999999999999999999876533


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhccc
Q 015916          205 EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVE  284 (398)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (398)
                      +.++..+...          .                                     ++..+    +.  |.++  +.+
T Consensus       241 ~~~~a~~~l~----------~-------------------------------------l~g~~----~~--~~~~--~~~  265 (513)
T KOG0254|consen  241 RLEEAKRSLK----------R-------------------------------------LRGLS----PE--DVEV--ELE  265 (513)
T ss_pred             ChHHHHHHHH----------H-------------------------------------HhCCC----Cc--chHH--HHH
Confidence            3233322100          0                                     11000    00  0000  000


Q ss_pred             CCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHH----HhccHhHHHHHHHHHhcccceeeeeechHHHHH
Q 015916          285 PLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE----AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL  360 (398)
Q Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~----~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~  360 (398)
                      .+            +.++..+..      .    ...+...++    ..+++.++...+..+-.......++...+++.+
T Consensus       266 ~~------------~~~~~~~~~------~----~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  266 LL------------KIKLLVEAE------V----AEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             HH------------HHHHHHhhh------c----ccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence            00            000000000      0    000111222    334445555666555555555678888899999


Q ss_pred             HhCCCch-hHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          361 ALGYVDV-SIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       361 ~~g~~~~-a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +.|.++. .....+.++.|.++-++..++.||++||.
T Consensus       324 ~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~  360 (513)
T KOG0254|consen  324 SAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK  360 (513)
T ss_pred             hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            9998754 67778889999999999999999999986

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.65  E-value=2.2e-16  Score=164.99  Aligned_cols=134  Identities=16%  Similarity=0.071  Sum_probs=110.1

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHH--hccc-------
Q 015916           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVV--SRKI-------  103 (398)
Q Consensus        34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~--~~~~-------  103 (398)
                      +...++++++|+++.++.+++.+...++..+ .++.|++.||+|||+.+.+|.+++++|.+++++.-  .+..       
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            4556889999999999999988888888865 79999999999999999999999999999887541  0000       


Q ss_pred             ---------------------------------C--CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHH
Q 015916          104 ---------------------------------Q--PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI  147 (398)
Q Consensus       104 ---------------------------------~--~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi  147 (398)
                                                       .  +..+..+++.|++.|+|.+..++....++.+|+|+ +|++.+|+
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                             0  01234556789999999999888889999999985 69999999


Q ss_pred             HHhhhhhhHHHHHHHHHhHc
Q 015916          148 LKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       148 ~~~~~glg~~i~~~l~~~~~  167 (398)
                      ..++..+|..+.+.+.+.+.
T Consensus       213 ~~~~~~iG~~lG~llgg~l~  232 (633)
T TIGR00805       213 LESIAVFGPAFGYLLGSFCL  232 (633)
T ss_pred             HHHHHHhhhHHHHHHHHHHH
Confidence            99999999888877766654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.65  E-value=3.7e-15  Score=148.43  Aligned_cols=133  Identities=17%  Similarity=0.056  Sum_probs=105.0

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      ....|.+.++++.+..+.+++.....++... +++.|++.||+|||+++.++.++.++++.........  ..++++.++
T Consensus        37 ~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  114 (417)
T PRK10489         37 GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL--PEPSLLAIY  114 (417)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--CCCcHHHHH
Confidence            3456777788888999999987777788765 7999999999999999999988888877665432110  114577777


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +.+++.|++.+....+....+.+++|+ +|+++.++.....++|..+.+.+...+.+
T Consensus       115 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        115 LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence            889999988887766777788899985 69999999998899998888888776543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.65  E-value=1e-14  Score=144.24  Aligned_cols=129  Identities=13%  Similarity=-0.010  Sum_probs=99.5

Q ss_pred             cccccHHHHHHHcCCChhhH-----HHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           32 TFSNYSDALKTLMNLTQLEL-----NNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~-----~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      .+..+.|.+.+++|++..+.     +++.+...++.. ..++.|++.||+|+|+++..+.++.+++.+++.+.       
T Consensus        32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------  104 (408)
T PRK09874         32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-------  104 (408)
T ss_pred             HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-------
Confidence            34556788888899987653     555555555554 47999999999999999999999888888776653       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++++.+++.+++.|++.+. +......+.+++| ++||++.|+...+..+|..+.+.+...+.+
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888889998887654 3455566778887 579999999999988998888888766543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.65  E-value=1.5e-14  Score=138.94  Aligned_cols=132  Identities=23%  Similarity=0.183  Sum_probs=114.3

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      .+.++...|.+.+++|.+..+.+++.....++... .++.|++.||+|||+.+.++.++..++.+...+.       +++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   87 (352)
T cd06174          15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSL   87 (352)
T ss_pred             hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccH
Confidence            34566777888889999999999987777777755 8999999999999999999999999999887764       467


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +.+++.+++.|++.+...........+++|+ +|+++.++.....++|..+.+.+...+.+
T Consensus        88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999998888888899999996 79999999999999999999888777654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.65  E-value=1.4e-14  Score=143.73  Aligned_cols=147  Identities=17%  Similarity=0.200  Sum_probs=116.2

Q ss_pred             CcHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      .+|..+...++....  ....++...+.+++++|+|..+++++.....+... .+++.|++.||+|+|+++.++.++..+
T Consensus        11 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~   88 (400)
T PRK11646         11 GKYFLLIDNMLVVLG--FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA   88 (400)
T ss_pred             cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence            345555555554433  23345566666889999999999997666556654 589999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +.+.+.+.       ++++.+++.+++.|++.+...++....+.+++| ++||++.|+......+|..+.+.+...+.
T Consensus        89 ~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646         89 GFATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98887653       467888888999999888766666777889997 57999999999999999999988877664

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.63  E-value=2.2e-14  Score=146.06  Aligned_cols=130  Identities=17%  Similarity=0.022  Sum_probs=98.9

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhccc-----CchHH-HHHHHHHHHHHHHHHHHHHhcccCCch
Q 015916           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPII-LLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~-----G~r~~-~~~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      +...|.+.++.|.+.++++.++... ......++.|++.||+     |||+. +.++.+...++...+++.  .  +..+
T Consensus        32 ~~~l~~~l~~~g~~~~~ig~~~~~~-~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~--~--~~~~  106 (491)
T PRK11010         32 SGTLQAWMTVENIDLKTIGFFSLVG-QAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL--E--PGTQ  106 (491)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc--C--Ccch
Confidence            4456677778899999999864433 2234689999999999     99986 657777776777666553  1  1145


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++.+.+.+++.+++.+....+...+..+|+| ++||++.++...+..+|..+.+.+...+.+
T Consensus       107 l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010        107 LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777778888888888777788888999998 579999999999999998888777666543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.62  E-value=3.2e-14  Score=140.86  Aligned_cols=124  Identities=14%  Similarity=0.035  Sum_probs=102.6

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      ...+++.++++.+..+.+++.....+... ++|+.|++.||+|||++++++.++..++.+.+.+.       .+.   .+
T Consensus        24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------~~~---~~   93 (393)
T PRK11195         24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------IHP---LL   93 (393)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------HHH---HH
Confidence            33455678899999999997777777765 58999999999999999999999998887766543       222   56


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      .|+++|++.+..+++....+.+++|+ +|++++|+......+|..+.+.+.+.+.+
T Consensus        94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999998888889999999985 69999999999988888888888776653

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.61  E-value=2e-15  Score=146.36  Aligned_cols=146  Identities=18%  Similarity=0.152  Sum_probs=119.9

Q ss_pred             cHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      .++.++.-++..+..-. -|+..-..+.+++++|++.++.+++.+...+... ++|++|.+.|||.||.++.+|..+..+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            34445544454443332 4666656788999999999999998887777765 589999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      +.++.++.       ..+|++.++|.+.|+|-+...+.+...+++.||+ +|+++.++...+...|+.+.-.+...
T Consensus       111 Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  111 AVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            99999876       4699999999999999998888999999999995 79999999999888887665544433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.61  E-value=1e-13  Score=132.65  Aligned_cols=274  Identities=16%  Similarity=0.112  Sum_probs=190.5

Q ss_pred             HHhccc-ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 015916           25 AISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK  102 (398)
Q Consensus        25 ~~~g~~-~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~  102 (398)
                      ...|.. -...+..|++++.|++++.|.+++..+...+... ++++|++.+|+|.|+.+++|..++++|+.+++-+... 
T Consensus        23 fl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-  101 (422)
T COG0738          23 FLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-  101 (422)
T ss_pred             HHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence            345543 3557899999999999999999988887777755 7999999999999999999999999999998744221 


Q ss_pred             cCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHH
Q 015916          103 IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV  181 (398)
Q Consensus       103 ~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~  181 (398)
                         .++..++...++.|.|.+..-++++.++....|+ +...=+.+..+++++|+++.|.+.+.++..+ +.        
T Consensus       102 ---~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~-~~--------  169 (422)
T COG0738         102 ---KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG-VA--------  169 (422)
T ss_pred             ---hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh-hh--------
Confidence               3455566677889999999999999999999985 5778889999999999999999999876532 00        


Q ss_pred             HHHHHHhhhhcccccCCCCC-CchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccc
Q 015916          182 PFVVCLGAIFFLRETTPAST-VDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVY  260 (398)
Q Consensus       182 ~~~i~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~  260 (398)
                                 ..-.++... ........+++.|+..+.                          ..+++....   .  
T Consensus       170 -----------~~~~~~~~~~~~~~~~~~v~~pYl~~~~--------------------------~lvll~v~~---~--  207 (422)
T COG0738         170 -----------LTMSAAQILAIKGADASSVQFPYLILAG--------------------------LLVLLAVLI---L--  207 (422)
T ss_pred             -----------hccCHHHHHHHHHHHHHhhhhHHHHHHH--------------------------HHHHHHHHH---H--
Confidence                       000000000 000011223333322211                          010000000   0  


Q ss_pred             cccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHH
Q 015916          261 SFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS  340 (398)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~  340 (398)
                        +. +   .|..+       +..|                    +.      .   +. .+.+..+++|+|++|.-.+.
T Consensus       208 --~~-k---~p~~~-------~~~~--------------------~~------~---~~-~~~~~~~l~~~~~~~~gvl~  244 (422)
T COG0738         208 --LS-K---LPDLQ-------VAAP--------------------SL------G---AS-GSAGLSSLFQNKHLRLGVLA  244 (422)
T ss_pred             --hc-c---CCcCC-------cccc--------------------cc------c---cc-ccchHHHHHhChHHHHHHHH
Confidence              11 0   11100       0011                    00      0   01 12267899999999999999


Q ss_pred             HHhcccceeeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          341 FLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       341 ~~~~~~~g~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .++-.|...++-+.+++++.+ .|.+  +++.+++.+-++-.+||++.-++..|+...+
T Consensus       245 ~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k  303 (422)
T COG0738         245 IFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK  303 (422)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            999999999999999999999 6766  4778999999999999998888887876654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.60  E-value=6.7e-14  Score=137.92  Aligned_cols=239  Identities=11%  Similarity=-0.049  Sum_probs=154.9

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHH----HHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIIL----LIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~----~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      +.|.+.+++|+|.+|++++.+...+.. ..+++.|++.||+|+|+..    .++..+..+.  ....       .++++.
T Consensus        26 ~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~--~~~~-------~~~~~~   96 (382)
T TIGR00902        26 FFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA--FSAG-------AHNAWL   96 (382)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH--HHHh-------hhhHHH
Confidence            456778899999999999666655555 4589999999999985432    2322222221  1111       146888


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhh
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI  190 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~  190 (398)
                      +++.+++.|.+.+...+.. ..+..+++++|+++.|......++|..+.+++.+.+.+                      
T Consensus        97 l~~~~~l~~~~~~~~~p~~-~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~----------------------  153 (382)
T TIGR00902        97 LFIAIGLFALFFSAGMPIG-DALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG----------------------  153 (382)
T ss_pred             HHHHHHHHHHHHccchhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            8888888877766544443 34456667889999999999999999999988887754                      


Q ss_pred             hcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccc
Q 015916          191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR  270 (398)
Q Consensus       191 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~  270 (398)
                                      ..+||..+.....+                          .+ +....   ..   ++++   .
T Consensus       154 ----------------~~g~~~~f~~~~~~--------------------------~~-~~~~~---~~---~~~~---~  181 (382)
T TIGR00902       154 ----------------MFDEQNILAILTAG--------------------------LA-FMLIG---FL---IKPT---I  181 (382)
T ss_pred             ----------------HcChhHHHHHHHHH--------------------------HH-HHHHH---HH---cCCC---C
Confidence                            24555432111100                          00 00000   00   1100   0


Q ss_pred             cCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceee
Q 015916          271 KRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLA  350 (398)
Q Consensus       271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~  350 (398)
                      ++++       + ++                   ++       ++    .+..+.++.+|+|+||.+.+..++..+....
T Consensus       182 ~~~~-------~-~~-------------------~~-------~~----~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~  223 (382)
T TIGR00902       182 PPKD-------A-IP-------------------ED-------ES----QGDSAFIALLKNPMNLRFLAAVCLIQGAHAA  223 (382)
T ss_pred             CCCc-------c-cc-------------------cc-------cc----ccchhHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            0000       0 00                   00       00    0112467899999999999888887777777


Q ss_pred             eeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          351 VMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       351 ~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +.+..+.+.++.|.++  .....++..+...++.++.|.+.||+++|+
T Consensus       224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~  271 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD  271 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence            8888888899999874  556777888899999999999999998875

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.60  E-value=6.3e-14  Score=138.05  Aligned_cols=239  Identities=13%  Similarity=0.018  Sum_probs=151.6

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCch----HHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAP----IILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r----~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      +.|.+.+++|+|.++++++.+...+... .+++.|++.||+|+|    +.+.++.....+   ....  .    ++++|.
T Consensus        26 ~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~---~~~~--~----~~~~~~   96 (382)
T PRK11128         26 FWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV---AFWF--G----AHSFWL   96 (382)
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH---HHHH--h----cccHHH
Confidence            4456778899999999997666667665 489999999999984    333332222211   1111  1    146888


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhh
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI  190 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~  190 (398)
                      +++.|.+.|.+.+........ ...+++++|+++.|.......+|..+.+++...+.+                      
T Consensus        97 l~i~~~l~g~~~~~~~~~~~a-~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~----------------------  153 (382)
T PRK11128         97 LFVAIGLFNLFFSPLVPLTDA-LANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS----------------------  153 (382)
T ss_pred             HHHHHHHHHHHHcccccHHHH-HHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            888898888877755444444 444557789999999988889999999998887654                      


Q ss_pred             hcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccc
Q 015916          191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR  270 (398)
Q Consensus       191 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~  270 (398)
                                      ..+||..+...+.     ..                         ..+....+   .+++  ++
T Consensus       154 ----------------~~g~~~~f~~~~~-----~~-------------------------~~~~~~~~---~~~~--~~  182 (382)
T PRK11128        154 ----------------WFGEQAILWILTA-----GV-------------------------ASMLLGQL---LRPT--IM  182 (382)
T ss_pred             ----------------HcChhHHHHHHHH-----HH-------------------------HHHHHHHH---ccCC--CC
Confidence                            2455543321110     00                         00000000   1100  00


Q ss_pred             cCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceee
Q 015916          271 KRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLA  350 (398)
Q Consensus       271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~  350 (398)
                      +++          ++                   +++      .+  +  ...+.++.+|++.+|.+.+..++.......
T Consensus       183 ~~~----------~~-------------------~~~------~~--~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~  223 (382)
T PRK11128        183 PQG----------ES-------------------RQQ------ES--A--GWPAWKALLKEPTVWRFLLCVSLLQGSHAA  223 (382)
T ss_pred             Ccc----------cc-------------------ccc------cc--c--ccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence            000          00                   000      00  0  123568999999999887766666555445


Q ss_pred             eeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          351 VMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       351 ~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +.+..+.+.++.|+++  .+...++..+...+++++.|++.||+++|+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  271 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD  271 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            6667777888888874  456777888899999999999999998875

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.59  E-value=7.8e-14  Score=138.36  Aligned_cols=136  Identities=15%  Similarity=0.071  Sum_probs=100.2

Q ss_pred             hccccccc-ccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhccc-----CchH-HHHHHHHHHHHHHHHHHHHH
Q 015916           27 SGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPI-ILLIGSLEGLVGYGAQWLVV   99 (398)
Q Consensus        27 ~g~~~~~s-~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~-----G~r~-~~~~g~~~~~ig~~~~~~~~   99 (398)
                      .|..+.+. --.|.+-++.|+|.+|++++...... ..+.++.|++.||+     |+|| .+.++.+..+++...+++..
T Consensus        11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~   89 (402)
T PRK11902         11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP   89 (402)
T ss_pred             HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence            34444443 23455666789999999998665544 45689999999999     8876 67777888877777765531


Q ss_pred             hcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          100 SRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       100 ~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .    ..+++.+++..++.+...+...++....+.+++|+ +|+++.++...++++|..+.+.+...+.
T Consensus        90 ~----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902         90 P----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             c----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            1    13567676666666766666667778889999986 5999999999999999888888766554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.59  E-value=3.5e-14  Score=140.13  Aligned_cols=162  Identities=15%  Similarity=0.029  Sum_probs=139.5

Q ss_pred             ccccccccHHHHHHHcCCChhh-HHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 015916           29 NNYTFSNYSDALKTLMNLTQLE-LNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (398)
Q Consensus        29 ~~~~~s~~~~~l~~~~g~s~~~-~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~  106 (398)
                      ..-..++..|++.+++|+|.+| .+.+..+...+..+ .+++|++.||+|+|+++.++.+...+..++..++       +
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-------~  113 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-------T  113 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------H
Confidence            4456777889999999999999 88888888888765 7999999999999999999999999999988875       5


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChh---HHHHHHHHHH
Q 015916          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPA---KFLFMLAIVP  182 (398)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~---~~~~~~~~~~  182 (398)
                      +++.+.+.|++.|++.|..+ +...++.+|||+ +|+++.|+..++..+|.++.+++...+. .-.|   ..+..+....
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s  191 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVF  191 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHH
Confidence            68888999999999999888 899999999995 6999999999999999999999988843 3334   3466677788


Q ss_pred             HHHHHhhhhcccccCCC
Q 015916          183 FVVCLGAIFFLRETTPA  199 (398)
Q Consensus       183 ~~i~~~~~~~l~~~p~~  199 (398)
                      ..++++..+++|.+++.
T Consensus       192 ~~~a~~~a~~LP~~~~s  208 (511)
T TIGR00806       192 MTFSVFLALFLKRPKRS  208 (511)
T ss_pred             HHHHHHHHHhCCCCchh
Confidence            88999999999976653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=4.7e-14  Score=140.70  Aligned_cols=149  Identities=19%  Similarity=0.121  Sum_probs=88.4

Q ss_pred             CcHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      +-|...+.-++.....+.  ..+.+...+++++|+|..+++++.+...++.. .+++.|++.||+|+|++++++....++
T Consensus        11 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSS--WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             chHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            345544433333332332  33455556788899999999997666666665 589999999999999999887766655


Q ss_pred             HHHHHHHHHhcccCCchHHH--HHHHHHHHhhhhhhhhhHHHHHHHHh---hccCCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916           91 GYGAQWLVVSRKIQPLSYWQ--MCVFLCMGGNSTTWMNTAVLVTCIRN---FRRNRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~g~g~~~~~~~~~~~~~---Fp~~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      +.........     .+.+.  ......+.++..+............|   ++++||.+.|......++|..+.+.+...
T Consensus        89 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  163 (420)
T PRK09528         89 LFGPFFIYVF-----APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGI  163 (420)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHH
Confidence            4432211100     01111  11112222222222222222233333   45668889999988889999998888766


Q ss_pred             Hc
Q 015916          166 LF  167 (398)
Q Consensus       166 ~~  167 (398)
                      +.
T Consensus       164 l~  165 (420)
T PRK09528        164 LF  165 (420)
T ss_pred             HH
Confidence            54

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.59  E-value=5.6e-14  Score=141.57  Aligned_cols=253  Identities=16%  Similarity=0.127  Sum_probs=183.3

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      ++++.+....+.+.+.+...++.++ .+++|.+.||++..+.+....+..++-.++.+..       ++++.+.+.|++.
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~ll  144 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------HSFPGLIALRFLL  144 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHH
Confidence            4578888889999988888888865 6899999999998777776666665433333322       5789999999999


Q ss_pred             hhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC------ChhHHH-HHHHHHHHHHHHhhh
Q 015916          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD------DPAKFL-FMLAIVPFVVCLGAI  190 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~------~~~~~~-~~~~~~~~~i~~~~~  190 (398)
                      |+..+..+++...++..||.+ +||+.+|+..+..++|+.+.+.+...+++.      .+|+|. +.-+++..+.++++.
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            999999999899999999985 799999999999999999999998886531      235543 333445555566666


Q ss_pred             hcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccc
Q 015916          191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR  270 (398)
Q Consensus       191 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~  270 (398)
                      +++|+.|+.....+ ++|+ +.                                                  ..++    
T Consensus       225 ~~lp~~P~~~~fl~-~~ek-~~--------------------------------------------------~~~~----  248 (495)
T KOG2533|consen  225 FFLPDNPSKAWFLT-DEEK-EL--------------------------------------------------VVER----  248 (495)
T ss_pred             EEecCChhhccccc-hHHH-HH--------------------------------------------------HHHH----
Confidence            66666665311000 0000 00                                                  0000    


Q ss_pred             cCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceee
Q 015916          271 KRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLA  350 (398)
Q Consensus       271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~  350 (398)
                                .+.++   +              +..       ++   +.+....+|++|+|..|.+.+..++......+
T Consensus       249 ----------~~~~~---~--------------~~~-------~~---~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~  291 (495)
T KOG2533|consen  249 ----------LRESP---S--------------GGI-------EN---KFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG  291 (495)
T ss_pred             ----------HHhcc---C--------------CCc-------cc---ccCHHHHHHHHhchhHHHHHHHHHHHhhcccc
Confidence                      00000   0              000       00   01236789999999999999999999999999


Q ss_pred             eeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHH
Q 015916          351 VMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYF  392 (398)
Q Consensus       351 ~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~  392 (398)
                      +.+.++.+.++ .|++  ++..+...+.+++++|-++.|+++||+
T Consensus       292 ~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  292 FSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            99999999999 4466  366788899999999999999999994

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.56  E-value=1e-13  Score=154.91  Aligned_cols=129  Identities=14%  Similarity=0.054  Sum_probs=99.1

Q ss_pred             ccHHHHHHHcCCChhh--HHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           35 NYSDALKTLMNLTQLE--LNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~--~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      ...+.+..+++.+.+.  .+++.+...++.. +++++|++.||+|||++++++.++..++.++..++...    .+++.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l  106 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWLA  106 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHHH
Confidence            3445566667766543  4666666666665 48999999999999999999887766665554433211    357888


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      ++.|++.|++.+...++...++.+++|+ +|++++|+..++..+|..+.+.+...+.
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999998888888899999985 6999999999999999888888776654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.54  E-value=2.5e-17  Score=165.52  Aligned_cols=154  Identities=17%  Similarity=0.141  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhH
Q 015916           50 ELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA  128 (398)
Q Consensus        50 ~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~  128 (398)
                      +.++......+|..+ ++++|++.||+|||+++.++.++..+|.++..++...    .+++.+++.|++.|++.|..+..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY----NNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence            456667777788876 6899999999999999999999999999988765110    16778888999999999988888


Q ss_pred             HHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC---CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCch
Q 015916          129 VLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA---DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE  204 (398)
Q Consensus       129 ~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~  204 (398)
                      ...++.|.-|+ +||....+...+..+|..+...+......   ++.|+..+.++.++.++.++..+++||.|+++..++
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~  202 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG  202 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccc
Confidence            88889999985 69999999999998887666555433322   245999999999999888999999999999987644


Q ss_pred             hhh
Q 015916          205 EKE  207 (398)
Q Consensus       205 ~~~  207 (398)
                      +.+
T Consensus       203 ~~~  205 (451)
T PF00083_consen  203 RDE  205 (451)
T ss_pred             ccc
Confidence            333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.53  E-value=5.5e-12  Score=128.33  Aligned_cols=179  Identities=9%  Similarity=0.026  Sum_probs=129.9

Q ss_pred             CcHHHHHHHHHHHHHh-cccccccc-cHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcc-cCchHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAIS-GNNYTFSN-YSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR-IPAPIILLIGSLE   87 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~-g~~~~~s~-~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr-~G~r~~~~~g~~~   87 (398)
                      ++|+.+...+.....- ...|.... ....+++++|+++++.+++........ ...+++|++.|| +|+|+++++|.++
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            3455555444443322 23454443 344568899999999999655554444 457899999999 9999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc---CCcchHHHHHhhhhhhHHHHHHHHH
Q 015916           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus        88 ~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l~~  164 (398)
                      +.+|++.+++..      .....+++.+.++|+|.|...+.....+.++||+   +|+.+.++...+.++|+++.+.+..
T Consensus        91 ~~~g~~~~~~~~------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         91 LAIGYFMTGMSL------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHhc------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            999999887641      1122345678889999998877778889999974   3588999999999999999888888


Q ss_pred             hHcCCChhHHHHHHHHHHHHHHHhhhhccccc
Q 015916          165 ALFADDPAKFLFMLAIVPFVVCLGAIFFLRET  196 (398)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~  196 (398)
                      .+.+..+|++.+++..+..++.++...+.++.
T Consensus       165 ~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~  196 (489)
T PRK10207        165 VIADKFGYSVTYNLCGAGLIIALLVYFACRGM  196 (489)
T ss_pred             HHHHhhChHHHHHHHHHHHHHHHHHHHHcchh
Confidence            87776668877777655555555555555544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.53  E-value=2e-13  Score=152.61  Aligned_cols=242  Identities=12%  Similarity=0.058  Sum_probs=152.0

Q ss_pred             HHHHcCCChhh-HHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHH--HHHHHHHHHHHHHhcccCCchHHHHHHHH
Q 015916           40 LKTLMNLTQLE-LNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSL--EGLVGYGAQWLVVSRKIQPLSYWQMCVFL  115 (398)
Q Consensus        40 l~~~~g~s~~~-~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~--~~~ig~~~~~~~~~~~~~~~~~~~l~~~~  115 (398)
                      +.++.+.+... .++......+... +++++|++.||+|+|+++.....  +........++. .     .+++.+++.+
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-~-----~s~~~l~~~~  115 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-L-----NSVPLLFAAL  115 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-H-----hhHHHHHHHH
Confidence            33444444433 4555555556654 58999999999999998643222  222222222221 1     4688899999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 015916          116 CMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (398)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~  194 (398)
                      +++|++.++..++...++.+++|+ +|++++|+..++.++|..+.+.+.+.+...                         
T Consensus       116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-------------------------  170 (1140)
T PRK06814        116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-------------------------  170 (1140)
T ss_pred             HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-------------------------
Confidence            999999998888889999999985 699999999999999999999998877653                         


Q ss_pred             ccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccCCC
Q 015916          195 ETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTE  274 (398)
Q Consensus       195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~  274 (398)
                                   .+|+..+.....+.+                            +...+...    +.+    .+..+
T Consensus       171 -------------~~~~~~~~~~~~~~~----------------------------~~~~~~~~----~~~----~~~~~  201 (1140)
T PRK06814        171 -------------GNFVILVALLMGIAV----------------------------LGWLASLF----IPK----TGNAA  201 (1140)
T ss_pred             -------------cccHHHHHHHHHHHH----------------------------HHHHHHhh----CCC----CCCCC
Confidence                         233322210000000                            00000000    110    00000


Q ss_pred             CCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeeeec
Q 015916          275 PDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNN  354 (398)
Q Consensus       275 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n  354 (398)
                            .+..+   +               .+.  .        ......++++.|++.+|.+.+..++......++...
T Consensus       202 ------~~~~~---~---------------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1140)
T PRK06814        202 ------PDLKI---D---------------RNI--I--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQ  247 (1140)
T ss_pred             ------CCCee---c---------------cch--H--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence                  00000   0               000  0        000124678889999999998877776666666678


Q ss_pred             hHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          355 MGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       355 ~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      ++.++++ +|.+.  .....+.++++..+|.++.|+++|+..++
T Consensus       248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence            8888876 46653  56788999999999999999999765543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.53  E-value=3.9e-13  Score=130.20  Aligned_cols=288  Identities=13%  Similarity=0.110  Sum_probs=192.7

Q ss_pred             CCCCCcHHHHHHHHHHHHHhccc-ccccccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHH
Q 015916            8 TSSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGS   85 (398)
Q Consensus         8 ~~~~~~w~~l~~~~~~~~~~g~~-~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~   85 (398)
                      +-.+|||+++++..+...+.+.. -.|+.......+.|| +.....|.+..+.+.. .+++++-|+.|++|-|...++|.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            35678999998888887777653 466777777888999 6666667766666655 46899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCchHH--HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHH
Q 015916           86 LEGLVGYGAQWLVVSRKIQPLSYW--QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDL  162 (398)
Q Consensus        86 ~~~~ig~~~~~~~~~~~~~~~~~~--~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l  162 (398)
                      ++.++|..+-..+....++ +.++  ....+..+.+.++.+....+....+-||| ++|..|..+...+..+|.++...+
T Consensus       117 ~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            9999999988765443332 2344  44467788888887766667788999997 579999999999988998877665


Q ss_pred             HHhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHH
Q 015916          163 CSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI  242 (398)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (398)
                      -..+.++                          +++.      ++..|-...++.+.-++++                  
T Consensus       196 ppilV~~--------------------------~~~~------~~~~~~~~~~f~~~~~l~~------------------  225 (480)
T KOG2563|consen  196 PPILVPS--------------------------SKDS------EDNSWLFFTLFLGVECLAA------------------  225 (480)
T ss_pred             cceecCC--------------------------CCCc------chhHHHHHHHHHHHHHHHH------------------
Confidence            5444332                          1110      1233322111111111111                  


Q ss_pred             HHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCc
Q 015916          243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED  322 (398)
Q Consensus       243 ~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  322 (398)
                            + + .++...    .++.   +|+          +.|   + .            .+..      .+  +..--
T Consensus       226 ------l-~-l~l~~~----~~~~---~P~----------tPp---s-~------------s~~~------~~--~~~f~  256 (480)
T KOG2563|consen  226 ------L-L-LALVLF----VFTK---KPP----------TPP---S-A------------SQAA------LQ--DASFP  256 (480)
T ss_pred             ------H-H-HHHHHH----hcCC---CCC----------CCC---c-h------------hHhh------hh--cCcHH
Confidence                  0 0 122222    1111   111          111   1 0            0000      10  11113


Q ss_pred             chHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHhCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       323 ~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+.+++++|++|-++.+++.++.|.-....+.+-..+...||.  ++.....+.-++.++|.++.|.+.||.++-+
T Consensus       257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk  332 (480)
T KOG2563|consen  257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK  332 (480)
T ss_pred             HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            5789999999999999999888888777777777677777887  4666777788899999999999999987643

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.52  E-value=1.3e-12  Score=129.19  Aligned_cols=127  Identities=17%  Similarity=0.037  Sum_probs=79.3

Q ss_pred             HHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc-CCchHHHHHHHHH
Q 015916           39 ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI-QPLSYWQMCVFLC  116 (398)
Q Consensus        39 ~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~-~~~~~~~l~~~~~  116 (398)
                      .+++++|++..+.+++.....+... ..++.|++.||+|||+.++.+.+..+++............ .....+..++.++
T Consensus        28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T TIGR00882        28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL  107 (396)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3577899999999997666667665 5899999999999999999887766655443322111000 0011222334566


Q ss_pred             HHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          117 MGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      +.|++.+...........+ ..++++...|......++|.++.+.+...+
T Consensus       108 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       108 YLGFVFSAGAGAIEAYIEK-VSRNSNFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHhccchhhHHHHHHH-hhhhcccccchhhhhcccHHHHHHHHHhhh
Confidence            6666555443332222222 224456677777777788888888776544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.50  E-value=2.6e-12  Score=127.16  Aligned_cols=146  Identities=14%  Similarity=0.033  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHH-HHHHhhhhhhhhhhhhhcccCchHHHH-HHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLS-VVKDIGKAFGLLAGLASDRIPAPIILL-IGSLEGLV   90 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~-~~~~~~~~~~~~~G~l~Dr~G~r~~~~-~g~~~~~i   90 (398)
                      .|..++..++.....+.  ..+...+.+++++|+|.++++++. .....+...+++.|...||+|+|+.++ .+.+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~--~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         17 STAFLIVAFLTGIAGAL--QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVL   94 (393)
T ss_pred             hHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            35444444443332222  223344457899999999999964 444556666655444499999998755 44555556


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHH-HHHhhhhhhhhhHHHHHHHHhhccC-C--cchHHHHHhhhhhhHHHHHHHHHhH
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFL-CMGGNSTTWMNTAVLVTCIRNFRRN-R--GPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~-~l~G~g~g~~~~~~~~~~~~~Fp~~-R--G~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      +..+..++       .+++.+++.+ ++.+.+. ...+.......++.|++ |  +...++..++..+|..+.+++...+
T Consensus        95 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l  166 (393)
T PRK15011         95 ACTLFAWN-------RNYFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL  166 (393)
T ss_pred             HHHHHHHh-------hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            66555443       4566665544 4444433 33333333344444432 3  2334677778889999998888776


Q ss_pred             cC
Q 015916          167 FA  168 (398)
Q Consensus       167 ~~  168 (398)
                      .+
T Consensus       167 ~~  168 (393)
T PRK15011        167 AM  168 (393)
T ss_pred             HH
Confidence            54

>TIGR00889 2A0110 nucleoside transporter

Probab=99.50  E-value=8.1e-13  Score=131.95  Aligned_cols=82  Identities=11%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCc-hHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~-r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      ...+.+++++|++.+|++++.....++... +++.|++.||+|+ |+++.++.+...++.....+.       ++++.++
T Consensus        24 ~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~   96 (418)
T TIGR00889        24 TLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV-------TTPAGMF   96 (418)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-------cCHHHHH
Confidence            344456788999999999987777777764 8999999999965 778888887776766665543       3577777


Q ss_pred             HHHHHHhhhhh
Q 015916          113 VFLCMGGNSTT  123 (398)
Q Consensus       113 ~~~~l~G~g~g  123 (398)
                      +.+++.|++.+
T Consensus        97 ~~~~l~~~~~~  107 (418)
T TIGR00889        97 PVLLANSLAYM  107 (418)
T ss_pred             HHHHHHHHHHc
Confidence            77777676544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.45  E-value=1.3e-12  Score=134.13  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=130.3

Q ss_pred             HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhh
Q 015916           42 TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN  120 (398)
Q Consensus        42 ~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  120 (398)
                      +.++.+.....+..+...+|.++ +++.|.++||+|||++++++.++..++.+..+++       ++++.++++|++.|+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGF  183 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHh
Confidence            55677777777777788888876 5799999999999999999999999998888775       689999999999999


Q ss_pred             hhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 015916          121 STTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       121 g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      +.+..+.....++.++++ ++|+.+..+ ......++.+.++....+.+  .|+++.++...+.++.++..++.+|.|+|
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rw  260 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRW  260 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHH
Confidence            998888888999999996 569999999 77777888888888888876  79999998888888887777777799998


Q ss_pred             CCCc
Q 015916          200 STVD  203 (398)
Q Consensus       200 ~~~~  203 (398)
                      +...
T Consensus       261 l~~~  264 (521)
T KOG0255|consen  261 LLSK  264 (521)
T ss_pred             HHHc
Confidence            7653

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.43  E-value=1.2e-11  Score=117.14  Aligned_cols=244  Identities=12%  Similarity=0.046  Sum_probs=183.0

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      ..+.+...+++++++|.|.++++.+++.-.+.. .++|++.++..|+|.++.+..+.++.++|..+-..        .+.
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~--------~~~   99 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL--------GGL   99 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--------ccH
Confidence            456677888999999999999999766555544 67999999999999999999999999999998754        235


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  188 (398)
                      +.++..-++.|.|.+..++.-...+-++||||-|..+|+.++..++|+++.+.+.-.+-++                   
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~-------------------  160 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQH-------------------  160 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh-------------------
Confidence            6677788889999998888888889999999999999999999999988887776554331                   


Q ss_pred             hhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccc
Q 015916          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (398)
Q Consensus       189 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (398)
                                        ..+||....+.....+..+                        ++-.|.       ..    
T Consensus       161 ------------------~~gW~~aL~~WAl~allAl------------------------~~WlPq-------~~----  187 (395)
T COG2807         161 ------------------SGGWRGALGFWALLALLAL------------------------LIWLPQ-------AL----  187 (395)
T ss_pred             ------------------hccHHHHHHHHHHHHHHHH------------------------HHHhhh-------cc----
Confidence                              2467765433332111111                        111110       00    


Q ss_pred             cccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccce
Q 015916          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (398)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g  348 (398)
                      |+            ..+   +               .+.      +       ..+...+.|+|.-|.+.+-+.+.....
T Consensus       188 r~------------~~~---~---------------~~~------~-------~~~~~~vw~~~~aW~vtLfmGlqS~~~  224 (395)
T COG2807         188 RE------------QAA---S---------------IAT------K-------LVSVRKVWRSPLAWQVTLFMGLQSLLY  224 (395)
T ss_pred             cc------------ccc---c---------------ccc------c-------cccccccccCchhHHHHHHHHhhHHHH
Confidence            00            000   0               000      0       112234789999999999999999999


Q ss_pred             eeeeechHHHHHHhCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          349 LAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       349 ~~~~~n~~~i~~~~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ..++..+++|+.|.|++  ++..++++..+.+....++.-++.+|...++
T Consensus       225 Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r  274 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR  274 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999998  3678999999999999999999999855443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.40  E-value=4.4e-12  Score=123.02  Aligned_cols=167  Identities=17%  Similarity=0.161  Sum_probs=113.4

Q ss_pred             ccccccHHHHHHH-cC-------CChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhc
Q 015916           31 YTFSNYSDALKTL-MN-------LTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR  101 (398)
Q Consensus        31 ~~~s~~~~~l~~~-~g-------~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~  101 (398)
                      ++.+...+-+... +|       ++..-.+.+..+..+|.++ +++.|++.||+|||++.....+++.++.+.+++....
T Consensus        58 F~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~  137 (538)
T KOG0252|consen   58 FSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT  137 (538)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC
Confidence            4445555555432 33       3344455677888899887 7999999999999999999999999999877664333


Q ss_pred             ccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHH---HHHHHHHhHcCC--------
Q 015916          102 KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTA---IFTDLCSALFAD--------  169 (398)
Q Consensus       102 ~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~---i~~~l~~~~~~~--------  169 (398)
                      ..+..-.+.++.+|++.|+|.|.=|+.+.+..+|.-.+ +||.-.+.+.+..|+|-.   +.+.+....++.        
T Consensus       138 ~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~  217 (538)
T KOG0252|consen  138 TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTY  217 (538)
T ss_pred             CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCc
Confidence            22222356778899999999999888777767777664 699999998888887633   334444444432        


Q ss_pred             ----ChhHHHHHHHHHHHHHHHhhhhcccccC
Q 015916          170 ----DPAKFLFMLAIVPFVVCLGAIFFLRETT  197 (398)
Q Consensus       170 ----~~~~~~~~~~~~~~~i~~~~~~~l~~~p  197 (398)
                          ..||..+.++.+|++..+..-+.+||++
T Consensus       218 ~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~  249 (538)
T KOG0252|consen  218 PHLDGVWRIIFGLGAVPALLVLYFRLKMPETA  249 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Confidence                1366666666666665554444443333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.39  E-value=7.7e-11  Score=120.65  Aligned_cols=156  Identities=16%  Similarity=0.067  Sum_probs=112.1

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      +...+.+-+++|-+ ....|+++...++... .++.|+++|.||||..++.|.++..+|.++.+.+       ++...+.
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------~~~~~~i  135 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------QNMNTFI  135 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------CcHHHHH
Confidence            34456778888865 5667777777777654 7999999999999999999999999999998754       5677888


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhh-
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI-  190 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  190 (398)
                      .+..+.|+|.|.... ....++|..|. +|+.+.++.....-....+.+.+.+.+..+..|||.+++.+....+.++.. 
T Consensus       136 ag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  136 AGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            888999998876654 34457888884 598887777655434333445555555556678887777776555554444 


Q ss_pred             hcccccCC
Q 015916          191 FFLRETTP  198 (398)
Q Consensus       191 ~~l~~~p~  198 (398)
                      ++.++|++
T Consensus       215 ~fY~PP~~  222 (599)
T PF06609_consen  215 FFYFPPPR  222 (599)
T ss_pred             HHhCCCch
Confidence            44454443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.36  E-value=3.1e-11  Score=122.98  Aligned_cols=170  Identities=15%  Similarity=0.077  Sum_probs=113.9

Q ss_pred             ccccccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 015916           29 NNYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (398)
Q Consensus        29 ~~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~  106 (398)
                      ..|.+..+.|++ ++++|++..+..++.....++... .+..|++.||+|||+++.++.+...++...+......    .
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~  340 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS----N  340 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC----C
Confidence            345566677875 567899988776665666666655 6889999999999999988876554433322211111    2


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHH
Q 015916          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFV  184 (398)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~  184 (398)
                      +...+++.+++.|++.+.........+.+.||+ .||+++|+......+++.+.+.+...+.+. ..+....++..++++
T Consensus       341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  420 (490)
T PRK10642        341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV  420 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            345555667776665554444455667789996 599999986555556677788887777653 234444445566777


Q ss_pred             HHHhhhhcccccCCCCCC
Q 015916          185 VCLGAIFFLRETTPASTV  202 (398)
Q Consensus       185 i~~~~~~~l~~~p~~~~~  202 (398)
                      ++++..+++||.|++...
T Consensus       421 i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        421 IGLITGVTMKETANRPLK  438 (490)
T ss_pred             HHHHHHHHhccccCCCCC
Confidence            777788888999987653

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.35  E-value=1.4e-11  Score=116.32  Aligned_cols=185  Identities=13%  Similarity=0.061  Sum_probs=139.0

Q ss_pred             CcHHHHHHHHHHH-HHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQ-AISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL   89 (398)
Q Consensus        12 ~~w~~l~~~~~~~-~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (398)
                      -+|.....+.... .-.+-....+...|.++..+|.+..|..+++....+++.+ +...|.+.|++|||+...+..+..+
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~  154 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG  154 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence            3455444333332 2223334456778888999999999999999988999977 6899999999999999888877776


Q ss_pred             HHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus        90 ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +.-++.+.       ++++..++++|.+.|+|.|. ++...+.-.+.-|. +|++-+-.. ..+.+|..+-..+.-..+.
T Consensus       155 v~~~is~~-------spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~  225 (528)
T KOG0253|consen  155 VFGVISGA-------SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS  225 (528)
T ss_pred             HHHHhhcC-------CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH
Confidence            65554432       26788899999999999986 44444445555574 788877666 7788887777777666677


Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchh
Q 015916          169 DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEE  205 (398)
Q Consensus       169 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~  205 (398)
                      +-+|+|+++...+|..+.....++++|.|+-...+++
T Consensus       226 ~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~  262 (528)
T KOG0253|consen  226 NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD  262 (528)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC
Confidence            7789999999999999999999999999998765433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.34  E-value=1.8e-11  Score=122.44  Aligned_cols=129  Identities=14%  Similarity=0.009  Sum_probs=87.5

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcc----cCchH-HHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDR----IPAPI-ILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr----~G~r~-~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.+.+.+++|++..+++++.+...+...+ .|+.|+++||    +|||| .++++....+++.++++.... .......+
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~-~~~~~~~~  100 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD-FSATGKLV  100 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC-CCcchHHH
Confidence            34456888999999999977777777654 8999999998    67745 577787888877777654211 00001234


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      .+++.+++.+.+.+...++......+..+  ++|+++.++...+..+|+.+.+.+...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~  158 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP  158 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455667777777655555666666653  579999998887777777666555433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.32  E-value=1.2e-10  Score=118.18  Aligned_cols=157  Identities=13%  Similarity=0.014  Sum_probs=120.3

Q ss_pred             ccccccHHH-HHHH--cCCChhhHHHHHHHHHhhhh-hhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           31 YTFSNYSDA-LKTL--MNLTQLELNNLSVVKDIGKA-FGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        31 ~~~s~~~~~-l~~~--~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      |....+.|. ++++  +|++..+.+++.....++.. ..+++|++.|| +|+|+++.++.++.+++++++++.       
T Consensus        27 ~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-------   99 (475)
T TIGR00924        27 YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-------   99 (475)
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------
Confidence            333333444 4666  99999999996666666655 47899999999 899999999999999999887753       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc----CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR----NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV  181 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~----~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~  181 (398)
                      .+++.+++.+++.|+|.|...+.....+++++|+    +|+.+.++...+..+|+++.+.+...+.+...|++.+.++.+
T Consensus       100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~  179 (475)
T TIGR00924       100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV  179 (475)
T ss_pred             ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            3456677788889999988777777889999974    388999999999999999999998888776567776666655


Q ss_pred             HHHHHHhhhhccc
Q 015916          182 PFVVCLGAIFFLR  194 (398)
Q Consensus       182 ~~~i~~~~~~~l~  194 (398)
                      ..+++++..++.+
T Consensus       180 ~~~~~~l~~~~~~  192 (475)
T TIGR00924       180 GMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHHHHHHcc
Confidence            4444544444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.31  E-value=9.6e-11  Score=119.67  Aligned_cols=156  Identities=8%  Similarity=0.040  Sum_probs=116.0

Q ss_pred             cccccccHHH-HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 015916           30 NYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (398)
Q Consensus        30 ~~~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~  106 (398)
                      .|.+..+.+. +++++|++.++.+++......... ..+++|++.|| +|+|+++.+|.++.+++++++.+.  .    .
T Consensus        37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~--~----~  110 (500)
T PRK09584         37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS--G----H  110 (500)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--c----c
Confidence            3444444444 578999999998885544443333 35789999999 599999999999999998887753  1    2


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC---CcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHH
Q 015916          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN---RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPF  183 (398)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~---RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~  183 (398)
                      +.+.+++.+++.|+|.|.........+.++||++   |+.+.++...+.++|+.+.+.+...+.+..+|++.+.++.+..
T Consensus       111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~  190 (500)
T PRK09584        111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM  190 (500)
T ss_pred             cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            3445566788889998877667778899999842   4567888888999999999999888877667888777777555


Q ss_pred             HHHHhhhh
Q 015916          184 VVCLGAIF  191 (398)
Q Consensus       184 ~i~~~~~~  191 (398)
                      +++++..+
T Consensus       191 ~i~~i~~~  198 (500)
T PRK09584        191 LITVVNFA  198 (500)
T ss_pred             HHHHHHHH
Confidence            55444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.28  E-value=4e-10  Score=111.21  Aligned_cols=255  Identities=12%  Similarity=-0.037  Sum_probs=141.9

Q ss_pred             HHhcccccc-cccHHHHHHHcCCChhhHHHHHHH--HHhhh-hhhhhh-hhhhcccCchHHHHHHHHHHHH-HHHHHHHH
Q 015916           25 AISGNNYTF-SNYSDALKTLMNLTQLELNNLSVV--KDIGK-AFGLLA-GLASDRIPAPIILLIGSLEGLV-GYGAQWLV   98 (398)
Q Consensus        25 ~~~g~~~~~-s~~~~~l~~~~g~s~~~~~~i~~~--~~~~~-~~~~~~-G~l~Dr~G~r~~~~~g~~~~~i-g~~~~~~~   98 (398)
                      ...|..+.+ ..+.|.+.++.|.|.++++.++..  ..+.. +.+|+. ++..||+|+||..+++..+... ....+...
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~   90 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALV   90 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcC
Confidence            345554333 345677778889999999996422  23333 347776 4478999999997666543322 22222211


Q ss_pred             HhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHH
Q 015916           99 VSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM  177 (398)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~  177 (398)
                        ....+...+.+ ....+.++.....+...-....++.++ +++...+....+..+|..+.+.....+.+         
T Consensus        91 --~~~~~~~~~~~-~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~---------  158 (390)
T TIGR02718        91 --GPDVAGAGWAV-GLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG---------  158 (390)
T ss_pred             --CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              10001112222 222333333343444444456677764 46888888888878888877766555443         


Q ss_pred             HHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhh
Q 015916          178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAI  257 (398)
Q Consensus       178 ~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~  257 (398)
                                                   ..+||..+...+.+.+.                           ...+. +
T Consensus       159 -----------------------------~~gw~~~f~~~a~l~~~---------------------------~~~~~-~  181 (390)
T TIGR02718       159 -----------------------------KFGQRPAFLLVACVPLA---------------------------SLVCV-L  181 (390)
T ss_pred             -----------------------------HhCHHHHHHHHHHHHHH---------------------------HHHHH-H
Confidence                                         34555543222211000                           00110 0


Q ss_pred             ccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHH
Q 015916          258 PVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWIL  337 (398)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l  337 (398)
                      .    +.++   ++           .++                   +++      +     ++..+.++.+|+|.+|.+
T Consensus       182 ~----~~~~---~~-----------~~~-------------------~~~------~-----~~~~~~~~~l~~~~~~~~  213 (390)
T TIGR02718       182 W----LKDR---AV-----------ASP-------------------EAP------L-----ARRASLFRFFRRPLAWSL  213 (390)
T ss_pred             H----cCCC---Cc-----------Ccc-------------------ccc------h-----hhHHHHHHHHcCcCHHHH
Confidence            1    1100   00           000                   000      0     001246789999999887


Q ss_pred             HHHHHhcccceeeeeechHHHHHHhCCCc--hhHHHHHHH-HHHHHhhhhhhhhhHHHHhHh
Q 015916          338 FVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTS-IWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       338 ~~~~~~~~~~g~~~~~n~~~i~~~~g~~~--~a~~vsl~s-i~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+..++.........+..+.+.++.|++.  .....++.+ +...+|.++.|++.||+++|+
T Consensus       214 ~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  275 (390)
T TIGR02718       214 LALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR  275 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            77666665545455566677888999874  445556655 466788999999999999886

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.6e-11  Score=117.14  Aligned_cols=149  Identities=19%  Similarity=0.187  Sum_probs=119.6

Q ss_pred             HcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhh
Q 015916           43 LMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (398)
Q Consensus        43 ~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (398)
                      ..+-++++++++.....+..+ ..|+.|.+.||+|+|..+++|.+++....+++++.       .+++.+++.|.++|+|
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgvg  172 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGVG  172 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhhh
Confidence            355667788886555556665 58999999999999999999999999999998874       5788899999999999


Q ss_pred             hhhhhhHHHHHHHHhhcc--CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhH-HHHHHHHHHHHHHHhhhhcccccCC
Q 015916          122 TTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIVPFVVCLGAIFFLRETTP  198 (398)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~l~~~p~  198 (398)
                      .++..++...++++.||+  +||.++|+..++.++|-.+.|++.+.+++-.+.. -++.++++..+-..+..+.+++...
T Consensus       173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            999999999999999995  3899999999999999999999988888754433 3445555555555555555544333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.25  E-value=4.7e-10  Score=113.44  Aligned_cols=176  Identities=12%  Similarity=0.003  Sum_probs=119.5

Q ss_pred             cHHHHHHHHHHHHH-hcccccccccHHH-HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhccc-CchHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAI-SGNNYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRI-PAPIILLIGSLEG   88 (398)
Q Consensus        13 ~w~~l~~~~~~~~~-~g~~~~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~~g~~~~   88 (398)
                      ++..+...+..... ....|....+.|. +++++|++..+.+.+......... ..+++|++.||+ |||+++.+|.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            34434444443332 2345666556665 467899999999986665555554 478999999999 9999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc---CCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      .+|++++...  +    .+...+++...+.++|.|.........+.+.||+   +|..+.++...+..+|+.+.|.+...
T Consensus        87 ~lg~lll~~~--~----~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~  160 (493)
T PRK15462         87 AIGHVVLGAS--E----IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY  160 (493)
T ss_pred             HHHHHHHHHh--h----cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence            9998766532  1    1112233332333345555444455678999984   59999999999999999999999988


Q ss_pred             HcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 015916          166 LFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (398)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~i~~~~~~~l~  194 (398)
                      +.+..+|++.+.++.+..+++++..++.+
T Consensus       161 L~~~~Gw~~~F~iaaigm~l~li~~~~~~  189 (493)
T PRK15462        161 AQEEYSWAMGFGLAAVGMIAGLVIFLCGN  189 (493)
T ss_pred             HHhhhChHHHHHHHHHHHHHHHHHHHHhh
Confidence            87766677776666655555555444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.24  E-value=3.8e-10  Score=111.67  Aligned_cols=157  Identities=10%  Similarity=0.052  Sum_probs=111.0

Q ss_pred             cccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        32 ~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+..+.|. +++++|++..+.+++.....+.... .++.|++.||+|+|+.+..+.+...+.+......       ++.+
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~  306 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------HSPA  306 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------hhHH
Confidence            33445555 5678999999888854444444443 6899999999999998887766555544333221       2445


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  189 (398)
                      .+.+.+++.+++.+...........+.+|++||++.++......+|..+.+.+.+.+.+...++..+.++.+..++.++.
T Consensus       307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~  386 (393)
T PRK15011        307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC  386 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            55556666666555544444556778899899999999988889999999988888777556777777777777777777


Q ss_pred             hhcccc
Q 015916          190 IFFLRE  195 (398)
Q Consensus       190 ~~~l~~  195 (398)
                      .+++|+
T Consensus       387 ~~~~~~  392 (393)
T PRK15011        387 LLRIKD  392 (393)
T ss_pred             HHhhcC
Confidence            776654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.14  E-value=1.2e-09  Score=90.34  Aligned_cols=125  Identities=15%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             hhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 015916           60 IGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR  138 (398)
Q Consensus        60 ~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp  138 (398)
                      ++.. .+++.|++.||+|+|+.+..+.....++.+.....       ++++.+.+.+++.|++.+..+........+.+|
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            4444 47899999999999999999999888888776653       356777778889999888777777788899998


Q ss_pred             c-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhh
Q 015916          139 R-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF  191 (398)
Q Consensus       139 ~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  191 (398)
                      + +|+++.++......+|..+.+.+...+.+...+++.+.+.....++..+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            5 6999999999999999999998888887665565555555444444443333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.13  E-value=2.6e-09  Score=104.20  Aligned_cols=148  Identities=14%  Similarity=0.133  Sum_probs=107.3

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      +++++|.+..+.+++......... ..++.|++.||+|+|+++.++.+...+.+....+.       ++.+.+.+..++.
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  298 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------NSLWALLMLQLLN  298 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            467899999988885444433333 46889999999999999988877666555444332       3456566667777


Q ss_pred             hhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 015916          119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~  194 (398)
                      |++.+...........+.+|++|+.+.|+......+|..+.+.+.+.+.+...++..+.+..+..+++.+...++|
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            8777766666667778888988899999999888899999999888877654555555555555666666555554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.10  E-value=2.4e-09  Score=106.02  Aligned_cols=158  Identities=18%  Similarity=0.103  Sum_probs=113.5

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +....+.|.+.++.|++..+.+.+.....++... .++.|++.||+|+|+.+..+.+...++.+...+.       ++.+
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~  309 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------PSFA  309 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------CcHH
Confidence            3344566777778899999988866666666654 7899999999999999888766666665554332       2445


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~  187 (398)
                      .+.+..++.|++.+...........+.+|+ +||++.|+.....++|+++.+.+.+.+.+. ..+...+.......++.+
T Consensus       310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        310 GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            555555666666655556667778899985 699999999999999999999999988875 344555555555555555


Q ss_pred             hhhhcccc
Q 015916          188 GAIFFLRE  195 (398)
Q Consensus       188 ~~~~~l~~  195 (398)
                      ++.+.+.+
T Consensus       390 ~~~~~~~~  397 (406)
T PRK11551        390 LAALLLVS  397 (406)
T ss_pred             HHHHHHhc
Confidence            55555433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.08  E-value=2.6e-09  Score=113.05  Aligned_cols=131  Identities=12%  Similarity=0.051  Sum_probs=93.2

Q ss_pred             HHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 015916           57 VKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIR  135 (398)
Q Consensus        57 ~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~  135 (398)
                      ...++.+. .+++|++.||+|||++++++.++.+++.+++++.       .+.+.+.+.+++.|+..+........++++
T Consensus       603 l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       603 LGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-------NSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444 6899999999999999999999999888877654       233444455556666555555667778899


Q ss_pred             hhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccc
Q 015916          136 NFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRE  195 (398)
Q Consensus       136 ~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~  195 (398)
                      +||. +||+++|+..+...+|+++.|.+...+.... ...+++++.+..+++.+..+++||
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~LPE  735 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALKLPD  735 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9995 6999999999999999999998887776533 233444444444445555555543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.08  E-value=3.1e-09  Score=106.12  Aligned_cols=162  Identities=10%  Similarity=0.087  Sum_probs=111.3

Q ss_pred             ccHHHHHHHcCCCh--------hhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           35 NYSDALKTLMNLTQ--------LELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        35 ~~~~~l~~~~g~s~--------~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      .+.+.+.++.|.+.        ++.+...+...+... ..++.|++.||+|+|+++.++.++..+++.+.... .. . .
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~-~~-~-~  305 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG-DP-E-Y  305 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-Cc-c-h
Confidence            44455555666553        344554444444444 46899999999999999999999888887666542 10 0 0


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHH-hhhhhhHHHHHHHHHhHcCC------ChhHHHH-
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFAD------DPAKFLF-  176 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~------~~~~~~~-  176 (398)
                      .+.+.+++..++.|++.+..+......+.+++|+ +||++.|+.. ...++|+++.+.+.+.+.+.      .+|+..+ 
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence            1245556678888888887766777788999995 6999999997 67889999999998888764      1255444 


Q ss_pred             HHHHHHHHHHHhhhhcccccCCC
Q 015916          177 MLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       177 ~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      ..++...+.+++..+++|++...
T Consensus       386 ~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       386 FFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccC
Confidence            34445555666666777766443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.07  E-value=2.4e-09  Score=108.39  Aligned_cols=159  Identities=14%  Similarity=0.037  Sum_probs=103.2

Q ss_pred             ccccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           31 YTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        31 ~~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      +....+.|. +++++|+|..+.++......++..+ .++.|++.||+|+|+.+..+.....++.....+. ..    .+.
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-~~----~~~  349 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-HA----TSE  349 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-hc----CcH
Confidence            344566775 5678999999998876666666655 7999999999999988776655444433222221 11    234


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhh-hHHHHHHHHHhHcC------------CChhHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL-STAIFTDLCSALFA------------DDPAKF  174 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~gl-g~~i~~~l~~~~~~------------~~~~~~  174 (398)
                      +.+++..++.|...............+++|+ +||++.|+......+ |+++.+.+.+.+.+            ...|+.
T Consensus       350 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~  429 (467)
T PRK09556        350 YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAG  429 (467)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHH
Confidence            4444555555543322222222455699996 599999999888776 66888999888887            234555


Q ss_pred             HHHHHHHHHHHHHhhhhccc
Q 015916          175 LFMLAIVPFVVCLGAIFFLR  194 (398)
Q Consensus       175 ~~~~~~~~~~i~~~~~~~l~  194 (398)
                      .+.+..+..+++++..++++
T Consensus       430 ~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        430 TFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555566666665554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.06  E-value=4.1e-09  Score=101.00  Aligned_cols=154  Identities=22%  Similarity=0.229  Sum_probs=121.2

Q ss_pred             cccccHHHHHH-HcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchH-HHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           32 TFSNYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPI-ILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        32 ~~s~~~~~l~~-~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~-~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      .+..+.|.+.+ .+|.+..+.+++.....++... .++.|++.||+|+|+ .+.++.++..++.+.....       ++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~  265 (352)
T cd06174         193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------PSL  265 (352)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------ccH
Confidence            33445566544 4599999999977777777755 789999999999999 9999999999988877653       345


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  187 (398)
                      +.+.+..++.|++.+...........+.+| ++||++.|+......+|..+.+.+.+.+.+...++..+.+..+..++..
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~  345 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            666778888899888888888888999999 5799999999999999999999999998876666666665555555555


Q ss_pred             hhhhc
Q 015916          188 GAIFF  192 (398)
Q Consensus       188 ~~~~~  192 (398)
                      +..++
T Consensus       346 i~~~~  350 (352)
T cd06174         346 LLLLL  350 (352)
T ss_pred             HHhee
Confidence            44443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00897 2A0118 polyol permease family

Probab=99.06  E-value=7.4e-09  Score=102.74  Aligned_cols=162  Identities=11%  Similarity=0.051  Sum_probs=107.2

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHH-HHHHHHHHHHHHHHHHHhcccCCch
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL-IGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~-~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      .+.+..+.|.+.+++|++..+.+.+.....++... .+..|++.||+|+|+... .+.+...++.+.+...... . .++
T Consensus       238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~~  315 (402)
T TIGR00897       238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH-F-GHS  315 (402)
T ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc-c-CCc
Confidence            34555677887778999999888765555566654 789999999999988764 3333333333332221110 0 124


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  187 (398)
                      .+.++++.++.|++.+.. .+......+..|++||++.|+.+....+|+.+.|.+.+.+++..++...+.+.++..++..
T Consensus       316 ~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            555555666777766643 3344556677788999999999999999999999999988876555555555555555555


Q ss_pred             hhhhccc
Q 015916          188 GAIFFLR  194 (398)
Q Consensus       188 ~~~~~l~  194 (398)
                      +..+++|
T Consensus       395 ~~~~~~~  401 (402)
T TIGR00897       395 FLTAFIR  401 (402)
T ss_pred             HHHHHhc
Confidence            5555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.05  E-value=2.7e-09  Score=106.40  Aligned_cols=149  Identities=13%  Similarity=0.092  Sum_probs=107.8

Q ss_pred             cCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhh
Q 015916           44 MNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNST  122 (398)
Q Consensus        44 ~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~  122 (398)
                      .+.+..+.+++.....+... ..++.|++.||+|+|+.+..+.++..++.++.++.       ++.+.+.+.+++.|++.
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~l~g~~~  329 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------TGPLEVSILKLLHAFEV  329 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHH
Confidence            46677777776555555554 47899999999999999999999888888777653       35666677788888877


Q ss_pred             hhhhhHHHHHHHHhhccC-CcchHHH-HHhhhhhhHHHHHHHHHhHcCCChhHHHHH-HHHHHHHHHHhhhhcccccCCC
Q 015916          123 TWMNTAVLVTCIRNFRRN-RGPVSGI-LKGYVGLSTAIFTDLCSALFADDPAKFLFM-LAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       123 g~~~~~~~~~~~~~Fp~~-RG~a~gi-~~~~~glg~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      +.........+.+++|++ |+++.+. .+...++|+.+.+++.+.+.+..+++..+. .+++..+..++..+.+|++|++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~~  409 (420)
T PRK09528        330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDREL  409 (420)
T ss_pred             HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            766666677888999864 8887655 456678999999999988887644544444 4555555555555666665554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.02  E-value=6e-09  Score=101.11  Aligned_cols=143  Identities=13%  Similarity=-0.036  Sum_probs=103.3

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~  114 (398)
                      +.+++.+++|++..+.+++.....++... .++.|++.||+|+|+.+.++.++..++++.+.+..     +.+.+.++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  301 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----MLNDVLFLAT  301 (377)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----cchhHHHHHH
Confidence            44556677899988888866666666654 78999999999999999999988888877665431     0122223334


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHH
Q 015916          115 LCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPF  183 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~  183 (398)
                      .++.|++.+..+......+.+.+|+ +||++.|+......+|+.+.+.+.+.+.+..+++..+.+..+..
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~  371 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA  371 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence            4556666665555555678899985 69999999999999999999999888877655655555444333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.01  E-value=7.1e-09  Score=102.46  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=110.2

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      .+.+.+.++.|++.  .++......++... .++.|++.||+|+|+.+..+..+..+++++..+.       ++.+.+.+
T Consensus       237 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  307 (399)
T PRK05122        237 TFITLYYAARGWDG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------PSPWMALI  307 (399)
T ss_pred             HHHHHHHHHccccc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHH
Confidence            34454444556643  33433334445444 6889999999999999999988888887766543       34555666


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhc
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  192 (398)
                      ..++.|++.+..+........+.+| ++||++.|+......+|..+.+++.+.+.+..+++..+.+..+..+++++..++
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888766555566778887 469999999999999999999988888776545666666666666666666666


Q ss_pred             ccccCCC
Q 015916          193 LRETTPA  199 (398)
Q Consensus       193 l~~~p~~  199 (398)
                      +++.+++
T Consensus       388 ~~~~~~~  394 (399)
T PRK05122        388 LYRRAPR  394 (399)
T ss_pred             hcccccc
Confidence            6555543

>PRK09669 putative symporter YagG; Provisional

Probab=99.01  E-value=6.8e-09  Score=104.43  Aligned_cols=124  Identities=13%  Similarity=-0.054  Sum_probs=81.4

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcc----cCch-HHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           38 DALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAP-IILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr----~G~r-~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      ..+.+.+|+|..+++.+....-+.. +..|+.|+++||    +||| +.++.+.+..++..+++.... +.......+.+
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p-~~~~~~~~~~~  112 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP-DFGATGKIIYA  112 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-CCCcchHHHHH
Confidence            3467889999999999666555555 458999999999    7774 556577777777766554321 10001223444


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHH
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDL  162 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l  162 (398)
                      ++..++.+.+......+..+...++.+  ++|++..+.-..+..+|+.+.+.+
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~  165 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVI  165 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555666677788875  569988888777777776665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.99  E-value=4.2e-09  Score=105.39  Aligned_cols=257  Identities=12%  Similarity=0.026  Sum_probs=151.9

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhc----ccCchHHHH-HHHHHHHHHHHHHHHH-HhcccCCchHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPAPIILL-IGSLEGLVGYGAQWLV-VSRKIQPLSYW  109 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~D----r~G~r~~~~-~g~~~~~ig~~~~~~~-~~~~~~~~~~~  109 (398)
                      .+.+.+.+|++...++.+....-+-. ...|+.|.++|    |+|||+..+ +|.+..++++++++.. ..+........
T Consensus        25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~  104 (428)
T PF13347_consen   25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV  104 (428)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence            34467888999999999655555554 45899999999    899777655 6778888888887653 11111111222


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  187 (398)
                      .+++..++..++......+..+...+..+  ++|.+..+.-..+..+|+.+.+.+...+.+.                  
T Consensus       105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~------------------  166 (428)
T PF13347_consen  105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSW------------------  166 (428)
T ss_pred             HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh------------------
Confidence            33444555567777666777777888886  3699999998888777776555554443321                  


Q ss_pred             hhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhcccccccccc
Q 015916          188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (398)
Q Consensus       188 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (398)
                                  ... ++...+++......+.+.+                            +...+....   .+|  
T Consensus       167 ------------~g~-~~~~~~~~~~~~v~~iv~~----------------------------v~~~i~~~~---~ke--  200 (428)
T PF13347_consen  167 ------------FGG-GDTSNGYRWMALVLAIVGL----------------------------VFFLITFFF---VKE--  200 (428)
T ss_pred             ------------hcc-CccchHHHHHHHHHHHHHH----------------------------HHhhhhhhe---eee--
Confidence                        000 0001133332211111000                            000000000   110  


Q ss_pred             ccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccc
Q 015916          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (398)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~  347 (398)
                       ++.           +.+                   +++      +   ........++.+|++.|+.+.+..++....
T Consensus       201 -~~~-----------~~~-------------------~~~------~---~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~  240 (428)
T PF13347_consen  201 -RSV-----------EVT-------------------EQE------K---KISLRDSLRSLFRNRPFRILLLAFFLQWLA  240 (428)
T ss_pred             -ccc-----------ccc-------------------ccc------c---ccccccchhhhcccchHHHHHHHHHHHHhh
Confidence             000           000                   000      0   000122468899999999998888877555


Q ss_pred             eeeeeechHHHHHHh-CCCc-hhHHHHHHHHHHHHhhhhhhhhhHHHHhHhc
Q 015916          348 GLAVMNNMGQIGLAL-GYVD-VSIFVSLTSIWGFFGRIISGSVSEYFIKMVH  397 (398)
Q Consensus       348 g~~~~~n~~~i~~~~-g~~~-~a~~vsl~si~~~~GRl~~G~lsD~~~~~~~  397 (398)
                      .....+....+.+.. |.++ .+....+..+.+.++-+++++++||+++|+.
T Consensus       241 ~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  241 FALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             hhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence            555555555555553 4443 4567778899999999999999999999874

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.97  E-value=1.5e-08  Score=100.84  Aligned_cols=158  Identities=15%  Similarity=0.117  Sum_probs=115.3

Q ss_pred             cccHHHHHHH-cCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           34 SNYSDALKTL-MNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        34 s~~~~~l~~~-~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      ..+.|.+.++ +|.+..+.+++.....++... .++.|++.||.++++.+..+.++.+++.+++.+.       ++.+..
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~  315 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------PMWILA  315 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------chHHHH
Confidence            3455665444 899999988876666677655 6889999999988888888888887777665432       345555


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhh
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGA  189 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~  189 (398)
                      .+..++.|++.+.........+.+.+|+ +||++.|+......+|..+.+.+.+.+.+. +....+...+++..+++++.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            5666777777776555556678889986 599999999998889999999998888765 33445555566666666666


Q ss_pred             hhcccccCC
Q 015916          190 IFFLRETTP  198 (398)
Q Consensus       190 ~~~l~~~p~  198 (398)
                      ...+++.++
T Consensus       396 ~~~~~~~~~  404 (417)
T PRK10489        396 LLVLGELRR  404 (417)
T ss_pred             HHhcccccc
Confidence            666666554

>PRK03545 putative arabinose transporter; Provisional

Probab=98.97  E-value=2.6e-08  Score=98.25  Aligned_cols=154  Identities=13%  Similarity=0.073  Sum_probs=102.9

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Q 015916           38 DALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~  116 (398)
                      +.+++++|.|..+.+++.....++... .++.|++.||+|+|+. ..+..+..++....... .     ++.+.+++..+
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~-~-----~~~~~~~~~~~  302 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPA-A-----NSEWHLSVLSI  302 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHH-h-----chHHHHHHHHH
Confidence            335667899998888866655666654 7899999999998764 45555554444433221 1     34566666677


Q ss_pred             HHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH-hhhhcccc
Q 015916          117 MGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL-GAIFFLRE  195 (398)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~l~~  195 (398)
                      +.|++.+.........+.+..|++||.+.|+......+|..+.+.+.+.+.+..+.+..+...++..++++ ......++
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence            77777655444445566677788899999999998899999999998888877555555555544444444 44445554


Q ss_pred             cCC
Q 015916          196 TTP  198 (398)
Q Consensus       196 ~p~  198 (398)
                      +|.
T Consensus       383 ~~~  385 (390)
T PRK03545        383 FPV  385 (390)
T ss_pred             cch
Confidence            443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.96  E-value=3.1e-08  Score=99.27  Aligned_cols=166  Identities=11%  Similarity=0.006  Sum_probs=93.6

Q ss_pred             cccccccHHHH-HHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCch
Q 015916           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        30 ~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      .|.+..+.|++ ++++|++..+.+.......+.. ..+++.|++.||+|+|+++.++.++..+........... .  .+
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~--~~  335 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-V--SS  335 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-C--Cc
Confidence            34555667774 6678999988887544444443 457888999999999998887766544433322211111 1  12


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhh-hHHHHHHHHHhHcCC-ChhHHHHHHHHHHHH
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL-STAIFTDLCSALFAD-DPAKFLFMLAIVPFV  184 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~  184 (398)
                      .+.......+.+...+..........+++||+ +||++.|+......+ .+...+.+.. +++. +.+...++..++..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHH
Confidence            22222111222222222223345567899996 599999998765443 2333444444 4432 223444455555666


Q ss_pred             HHHhhhhcccccCCC
Q 015916          185 VCLGAIFFLRETTPA  199 (398)
Q Consensus       185 i~~~~~~~l~~~p~~  199 (398)
                      +.+++.++++++++.
T Consensus       415 i~~~~~~~l~~~~~~  429 (432)
T PRK10406        415 VAFLVSLMLHRKGKG  429 (432)
T ss_pred             HHHHHHHHhhhcccc
Confidence            666666666655543

>PRK03699 putative transporter; Provisional

Probab=98.95  E-value=1.4e-08  Score=100.50  Aligned_cols=159  Identities=10%  Similarity=-0.045  Sum_probs=107.1

Q ss_pred             ccccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        31 ~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      +.+..+.|.+ ++++|+|..+.+.+.+...++... .+..|++.||+|+|+.+.....+..++.++....       ++.
T Consensus       222 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------~~~  294 (394)
T PRK03699        222 LTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------DDP  294 (394)
T ss_pred             HHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------CCc
Confidence            4445567765 577899999988866665566554 6899999999999999888777666655544322       233


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  188 (398)
                      +.+.+..++.|++.+..++.......+..|++++...|.......+|+.+.|.+.+.+.+..+++..++......+++++
T Consensus       295 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        295 SHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            34444555666666655555555566666777888999998888999999999998887754444444444444444444


Q ss_pred             hhhccccc
Q 015916          189 AIFFLRET  196 (398)
Q Consensus       189 ~~~~l~~~  196 (398)
                      ....+.+.
T Consensus       375 ~~~~~~~~  382 (394)
T PRK03699        375 MCILLGFV  382 (394)
T ss_pred             HHHHHHHH
Confidence            34444333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.95  E-value=3.9e-09  Score=100.57  Aligned_cols=133  Identities=14%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             cccccccccH-HHHHHHcCCCh----hhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhc
Q 015916           28 GNNYTFSNYS-DALKTLMNLTQ----LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR  101 (398)
Q Consensus        28 g~~~~~s~~~-~~l~~~~g~s~----~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~  101 (398)
                      +..|-+.++. .+++...+-++    .-.+.+.+.+.+...+ ++..|.++||+|||+++++|.+..++.+.+.+.+   
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---  118 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---  118 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---
Confidence            3445554443 22333333333    3345567777777765 8999999999999999999999999988887764   


Q ss_pred             ccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          102 KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       102 ~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                          .++..+.+.|++.|+..|.. ....+++.+.++ |+|+++++.+...+++|-.+.|.+.+.+-.
T Consensus       119 ----~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 ----RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ----HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence                56744555699999999865 467888999997 569999999999999998888888777644

>PRK09952 shikimate transporter; Provisional

Probab=98.94  E-value=4.4e-08  Score=98.48  Aligned_cols=162  Identities=9%  Similarity=0.083  Sum_probs=102.8

Q ss_pred             ccccccHHHH-HHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        31 ~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      |....+.|++ ++++|.+..+...+.....+... ..++.|++.||+|+|+++..+.++..++...+......   ..+.
T Consensus       267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~  343 (438)
T PRK09952        267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA---QSIF  343 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc---CChH
Confidence            4344455554 67789888765544333333333 46889999999999999988877665554433332111   1223


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhh-hhhhHHHHHHHHHhHcCC--ChhHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGY-VGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFV  184 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~-~glg~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~  184 (398)
                      +.+.+..++.+++.+.........+.+.||+ .|+.+.|+.... ..+|+.+.|.+...+.+.  +.+...+.+..+..+
T Consensus       344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~  423 (438)
T PRK09952        344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCL  423 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            3333344555666665555566778899996 599998886543 457888889888888762  335555555666666


Q ss_pred             HHHhhhhcccc
Q 015916          185 VCLGAIFFLRE  195 (398)
Q Consensus       185 i~~~~~~~l~~  195 (398)
                      +..++.+.+|+
T Consensus       424 i~~v~~~~~~~  434 (438)
T PRK09952        424 ISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHccc
Confidence            66666666654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.94  E-value=3.7e-08  Score=97.10  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=109.8

Q ss_pred             ccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        33 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      +..+.|.+.+++|.+..+.+.......+.... .++.|++.||+|+|+++.++.+...+.++...+.       ++.+.+
T Consensus       224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~  296 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------EAFPLI  296 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------hhHHHH
Confidence            33455666567999999999865555555554 6899999999999999999999999999887654       467778


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHH-hhhhhhHHHHHHHHHhHcCCChhHHHHHHHH
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFADDPAKFLFMLAI  180 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~  180 (398)
                      ++..++.|+..+....+....+.+. |+ +|+++.++.+ ...|+|..+.+.+.+.+.+......++..+.
T Consensus       297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~  366 (382)
T TIGR00902       297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAI  366 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8888999999998888888888887 75 6899999975 5678999999999988887644433333443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.94  E-value=5.7e-08  Score=99.39  Aligned_cols=126  Identities=16%  Similarity=0.141  Sum_probs=98.1

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      +..+..-|...++++..+..+-.+ +++++|.+.||+.+|++++.+-++.++..+.+........  .++|.++++.++.
T Consensus        36 lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~--~~~~~Ll~~~fl~  113 (524)
T PF05977_consen   36 LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL--LSPWLLLILTFLL  113 (524)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc--CCHHHHHHHHHHH
Confidence            444556677788887777777764 5999999999999999999999888776655544322111  3578888888999


Q ss_pred             hhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      |++.++..++....+.+..|+ +...|+++......++..++|.+.+.++
T Consensus       114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen  114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            999998878888888899996 5789999999888888888877776654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.92  E-value=2e-08  Score=100.61  Aligned_cols=165  Identities=16%  Similarity=0.083  Sum_probs=105.2

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCC----c
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP----L  106 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~----~  106 (398)
                      ....+.|.+.+++|++..+.++......++.. ..++.|++.||+|+|+.+.++.++..++.+++.+........    .
T Consensus       302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (481)
T TIGR00879       302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS  381 (481)
T ss_pred             ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence            34456777888899999777776655555554 478999999999999999999888888877765321111110    0


Q ss_pred             hHHHHHH-HHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHH-HHHHHHH
Q 015916          107 SYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLF-MLAIVPF  183 (398)
Q Consensus       107 ~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~-~~~~~~~  183 (398)
                      +...+.. ..+..+.+.+.. ......+.+.+|+ +||++.|+......+|+++.+.+...+.+...+.+.+ ..+++..
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~  460 (481)
T TIGR00879       382 GNVAIVFILLFIAFFAMGWG-PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV  460 (481)
T ss_pred             hHHHHHHHHHHHHHHHcccc-CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHH
Confidence            2222222 222222233321 2334556899985 6999999999999999999999988887654444433 3333334


Q ss_pred             HHHHhhhhcccccC
Q 015916          184 VVCLGAIFFLRETT  197 (398)
Q Consensus       184 ~i~~~~~~~l~~~p  197 (398)
                      +..++..++.|+++
T Consensus       461 ~~~i~~~~~~~~~~  474 (481)
T TIGR00879       461 LGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHheecccCC
Confidence            44444444555544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.90  E-value=9.1e-08  Score=94.88  Aligned_cols=163  Identities=13%  Similarity=0.084  Sum_probs=108.5

Q ss_pred             cccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           32 TFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        32 ~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+..+.|.+ ++++|++..+.++......++... .++.|++.||+|+|+.+.++.++..++.+.........  ..+.+
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~  310 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS--SHAYL  310 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc--cccHH
Confidence            344445554 677999998888755544555554 68999999999999999999888888877766532111  12344


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH-h
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL-G  188 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~  188 (398)
                      .+.+..++.|+|.+...+..........|++||++.++......+|..+.+.+.+.+.+...+......+....++.+ .
T Consensus       311 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK15402        311 WLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLL  390 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence            555666777888776554444444344456899999999999999999999998888776544434444443333333 3


Q ss_pred             hhhccccc
Q 015916          189 AIFFLRET  196 (398)
Q Consensus       189 ~~~~l~~~  196 (398)
                      ...++|+.
T Consensus       391 ~~~~~~~~  398 (406)
T PRK15402        391 VRIFLKDK  398 (406)
T ss_pred             HHHHhccC
Confidence            33344443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.89  E-value=2.9e-08  Score=96.87  Aligned_cols=137  Identities=13%  Similarity=-0.020  Sum_probs=92.7

Q ss_pred             cccccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCch
Q 015916           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        30 ~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      .+....+.|.+ ++++|.+..+.+.+.....++... .++.|++.||+|+|+.+..+..+..+...........   ..+
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  311 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD---SGS  311 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc---CCc
Confidence            34445566665 577899998888865555566554 7899999999999998876655544332211111111   124


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHH-HhhhhhhHHHHHHHHHhHcCC
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~-~~~~glg~~i~~~l~~~~~~~  169 (398)
                      .+.+.+..++.|++.+..+.+....+.+.+|+ +|+++.|+. ..+..+|+.+.|.+.+.+.+.
T Consensus       312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~  375 (394)
T TIGR00883       312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM  375 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence            45555556677777776777778889999996 599999985 344557777888888777664

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.88  E-value=1.7e-07  Score=94.61  Aligned_cols=137  Identities=6%  Similarity=-0.035  Sum_probs=90.3

Q ss_pred             cccccccc---cHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhc----ccCchHHHHHH-HHHHHHHHHHHHHH
Q 015916           28 GNNYTFSN---YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASD----RIPAPIILLIG-SLEGLVGYGAQWLV   98 (398)
Q Consensus        28 g~~~~~s~---~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~D----r~G~r~~~~~g-~~~~~ig~~~~~~~   98 (398)
                      |..++|+.   +.+++.+++|.+..+.+++.....+... ..|+.|+++|    |+|||+.++++ .+...++++++.++
T Consensus        15 Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~   94 (477)
T TIGR01301        15 GVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA   94 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence            44444443   4455678899999999997666666554 5899999999    59999998875 55555666666543


Q ss_pred             Hhc------ccCCc-hH---HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CC--cchHHHHHhhhhhhHHHHHHHHH
Q 015916           99 VSR------KIQPL-SY---WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR--GPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus        99 ~~~------~~~~~-~~---~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R--G~a~gi~~~~~glg~~i~~~l~~  164 (398)
                      -.-      ..... ..   +...+...+..++......+..+.+++.+|+ +|  +.+.++.....++|+.+.+.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~  173 (477)
T TIGR01301        95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA  173 (477)
T ss_pred             chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110      00000 01   1222233344556666667778889999984 33  78999998888999888777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.87  E-value=1.1e-07  Score=92.93  Aligned_cols=131  Identities=16%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             cccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        32 ~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+..+.|. +++++|++..+.+++.....++... .++.|++.||+|+|+.+..+..+..++.+++........  .+.+
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  301 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL--GSWA  301 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHH
Confidence            33344454 4668999999999876666666654 789999999999999999998888877766654321110  1233


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~  164 (398)
                      .+.....+.|++.+..+........+.+|++||++.++.......++.+.+++..
T Consensus       302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       302 MIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566677877777766777777888988999999988877777777777766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10504 putative transporter; Provisional

Probab=98.86  E-value=8.6e-08  Score=96.99  Aligned_cols=130  Identities=11%  Similarity=0.053  Sum_probs=95.2

Q ss_pred             ccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           35 NYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        35 ~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      .+.|.+ +..+|.+..+.++......++... .++.|++.||+|+|+++.++.++..++..++.+...    ..+.+.+.
T Consensus       282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  357 (471)
T PRK10504        282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL----LGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc----cccHHHHH
Confidence            345554 446899998888866666666654 689999999999999999999888877766554211    12333334


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +..++.|++.+..+.+......+.+|+ .||.+.|+.+....+|..+.+.+.+.+++
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777778888885 59999999999888888888877766653

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.85  E-value=1.1e-07  Score=97.06  Aligned_cols=156  Identities=11%  Similarity=0.105  Sum_probs=105.5

Q ss_pred             HHHHHHcCCChhhHHHHH-HHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Q 015916           38 DALKTLMNLTQLELNNLS-VVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFL  115 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~-~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~  115 (398)
                      |.+.+++|++..+.+++. ....++... .+++|++.||+|+|+.+.++.++.+++.+........   .++.+.+.+..
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~---~~~~~~l~~~~  323 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT---DKNLYSMGAAV  323 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHH
Confidence            445678999999999864 455556555 6899999999999998887776655544333221111   12333333333


Q ss_pred             HHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 015916          116 CMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (398)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~  194 (398)
                      ++..+..|..+.+......+..|+ .+++..|+.++..++|..+.+++.+.+.+..+++..+.+..+..+.+++....+|
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333343344456667778886 4899999999999999999999888888765676666667767777777776666


Q ss_pred             cc
Q 015916          195 ET  196 (398)
Q Consensus       195 ~~  196 (398)
                      +.
T Consensus       404 ~~  405 (491)
T PRK11010        404 QT  405 (491)
T ss_pred             hc
Confidence            54

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.6e-07  Score=91.62  Aligned_cols=165  Identities=12%  Similarity=0.011  Sum_probs=124.2

Q ss_pred             HhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015916           26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        26 ~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~  104 (398)
                      ..|..-.|+...|.+++..|.|.++++++...+.++..+ ..++|++.|| ++|+.+.....+..+.++.+.+.  .   
T Consensus       224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~--~---  297 (394)
T COG2814         224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT--G---  297 (394)
T ss_pred             HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--c---
Confidence            345555666677888999999999999988888888876 6999999999 99999999988888887776654  1   


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 015916          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (398)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (398)
                       .+.+...+.-++.|++.+..-..-..-.++..|+.++.+.++..+.+.+|.++.+.+.+.++++.......+.+....+
T Consensus       298 -~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~  376 (394)
T COG2814         298 -ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLL  376 (394)
T ss_pred             -chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence             2344444444456665554434444445565578999999999999999999999999999988777777777777777


Q ss_pred             HHHhhhhcccccC
Q 015916          185 VCLGAIFFLRETT  197 (398)
Q Consensus       185 i~~~~~~~l~~~p  197 (398)
                      ++++..+..+..+
T Consensus       377 ~a~~~~~~~~~~~  389 (394)
T COG2814         377 LALLLALLSARKD  389 (394)
T ss_pred             HHHHHHHHHHhcc
Confidence            7776666554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.84  E-value=8.7e-08  Score=96.12  Aligned_cols=138  Identities=13%  Similarity=0.063  Sum_probs=87.4

Q ss_pred             cccccccccHHHH-HHHcCCChhhHHHH-HHHHHhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           28 GNNYTFSNYSDAL-KTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        28 g~~~~~s~~~~~l-~~~~g~s~~~~~~i-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      |...+++.+.|.+ ++++  +....... .....++.+..|++|+++||+|+|+++.++.+...++.......... .++
T Consensus       266 G~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~-~~~  342 (462)
T PRK15034        266 GSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG-TGS  342 (462)
T ss_pred             HHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc-ccc
Confidence            3433455566665 4444  33322222 22223344557999999999999999999998887776554433211 111


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc----------------------CCcchHHHHHhhhhhhHHHHHHHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR----------------------NRGPVSGILKGYVGLSTAIFTDLC  163 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~----------------------~RG~a~gi~~~~~glg~~i~~~l~  163 (398)
                      .+++.+.+..+...+..|..+.+....+.+.||+                      +-|.+.|+..+..++|+++.|.++
T Consensus       343 ~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~  422 (462)
T PRK15034        343 GNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAF  422 (462)
T ss_pred             cHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence            2444444433333344455555667788888884                      347889999999999999999998


Q ss_pred             HhHcC
Q 015916          164 SALFA  168 (398)
Q Consensus       164 ~~~~~  168 (398)
                      +...+
T Consensus       423 g~~~~  427 (462)
T PRK15034        423 GMSLN  427 (462)
T ss_pred             HHHHH
Confidence            88765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.84  E-value=3.6e-08  Score=99.58  Aligned_cols=127  Identities=12%  Similarity=-0.009  Sum_probs=91.8

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcc--cCchHHHHHHHHHH--HHHHHHHHHHHhcccCCchHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDR--IPAPIILLIGSLEG--LVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr--~G~r~~~~~g~~~~--~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+.|++.+++|++..+.+++.....++..+ .++.|++.||  +++|+...++....  ++++++..+.       ++++
T Consensus       262 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------~~~~  334 (455)
T TIGR00892       262 IFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-------GDYT  334 (455)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-------chHH
Confidence            456666677899999998865555666654 7899999998  44554444443333  3333333221       3566


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      .+++.+++.|++.+.........+.+.+|+ +||++.|+..+...+|+++.+.+.+.+.+
T Consensus       335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            677788888888877766777778888885 68999999999999999999999887765

>PRK12382 putative transporter; Provisional

Probab=98.83  E-value=4.9e-08  Score=96.28  Aligned_cols=148  Identities=14%  Similarity=0.147  Sum_probs=103.4

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      .+.+.+-++.+++..  +.......++.. ..++.|++.||+|+|+.+..+..+..+++++..+.       ++.+.+.+
T Consensus       237 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  307 (392)
T PRK12382        237 TFVSLYFASKGWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------PTAWVALA  307 (392)
T ss_pred             HHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------ccHHHHHH
Confidence            444555455676643  333333344444 46899999999999999999998888888766542       34555566


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhh
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF  191 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  191 (398)
                      ..++.|++.+..+........+.+| ++||++.|+......+|.++.+.+.+.+.+..+++..+.+.....++.++..+
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            7778888877666555566778887 57999999999999999999999999888765555554444444444444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.83  E-value=1.2e-07  Score=94.49  Aligned_cols=135  Identities=15%  Similarity=0.078  Sum_probs=87.8

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +....+.|.+.++.|.+..+.+.+.....++... .++.|++.||+|+|+.+..+.++..++.+..... ..    .+..
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~  322 (426)
T PRK12307        248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQ----DNYL  322 (426)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-cc----ccHH
Confidence            3344566777667899988888765555555554 7899999999999999998887776665544322 11    1222


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCC
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD  170 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~  170 (398)
                      .+.+..+..+.+...........+.+.+|+ +||++.|+......+|+.+.+.+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        323 LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM  384 (426)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence            211111111111111112233567899995 5999999999998999999988888876653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.82  E-value=1.1e-07  Score=93.93  Aligned_cols=128  Identities=13%  Similarity=0.051  Sum_probs=92.3

Q ss_pred             HHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 015916           58 KDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRN  136 (398)
Q Consensus        58 ~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~  136 (398)
                      ..++.. ..+..|++.||+|+|+++..+.....++.+...+.       ++.+.+++.+++.|++.+...+.....+.+.
T Consensus       267 ~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        267 PGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------QTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            334444 46889999999999999999888777776655442       3456666777888888887766666666666


Q ss_pred             hcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhc
Q 015916          137 FRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (398)
Q Consensus       137 Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  192 (398)
                      .|+ +||++.|+......+|..+.+.+.+.+.+...++..+.+.....++..+..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            674 69999999999999999999988888776655555555555444444444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.82  E-value=7.8e-08  Score=98.36  Aligned_cols=136  Identities=13%  Similarity=0.026  Sum_probs=85.9

Q ss_pred             cccccccHHHHHHHcCCChhhHHH------------HHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNN------------LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQW   96 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~------------i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~   96 (398)
                      .|....+.|.+.++.|++..+.+.            ......++... .++.+++.||+|||++++++.++.+++..++.
T Consensus       304 ~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~  383 (502)
T TIGR00887       304 FYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG  383 (502)
T ss_pred             HHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence            456666788877788886542211            11222233333 47889999999999999999888887776666


Q ss_pred             HHHhcccCCchHHHHHH-HHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916           97 LVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus        97 ~~~~~~~~~~~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      ..... .+......++. +....+.+.   .........|.||.+ ||++.|+..+...+++++.+.+...+.+.
T Consensus       384 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       384 FAYNH-LSTHGFLAIYVLAQFFANFGP---NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             HHHHh-cchhHHHHHHHHHHHHHhcCC---CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            54221 00011111111 111112221   123445568999965 99999999999999999999998888763

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.81  E-value=1.8e-07  Score=92.68  Aligned_cols=153  Identities=11%  Similarity=0.051  Sum_probs=102.4

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +....+.|++-+++|++..+.+.......++... .+..|++.||+|+|+.+.++..+..+++..+...  .    .+..
T Consensus       222 ~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~--~----~~~~  295 (393)
T PRK09705        222 ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL--P----LQLP  295 (393)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc--c----chHH
Confidence            3444566776666899999998866666677655 6899999999999999999888777776654321  1    1111


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVC  186 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~  186 (398)
                      .+.  .++.|++.+..+........+.++  ++||++.|+......+++.+.+.+.+.+.+. +.+...+.+..+.+++.
T Consensus       296 ~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (393)
T PRK09705        296 VLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL  373 (393)
T ss_pred             HHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            121  234566666555555555556664  3689999999998889989999888888764 23444444444444444


Q ss_pred             Hhhhh
Q 015916          187 LGAIF  191 (398)
Q Consensus       187 ~~~~~  191 (398)
                      +++..
T Consensus       374 ~~~~~  378 (393)
T PRK09705        374 MIITL  378 (393)
T ss_pred             HHHHH
Confidence            44433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.81  E-value=8.6e-08  Score=97.34  Aligned_cols=124  Identities=16%  Similarity=0.093  Sum_probs=78.9

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhc----ccCc-hHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           38 DALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~D----r~G~-r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      ..+.+.+|++..+++.+....-+.. +..|+.|.++|    |+|| |+-+++|.+..++++++++.. .+......++.+
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-p~~~~~~~~~~~  109 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-HLFEGTAQYVFV  109 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-CCCCccHHHHHH
Confidence            3467788999999999655544444 45899999999    6699 556667887878877666432 110001123333


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHH
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDL  162 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l  162 (398)
                      ++..++.+.+..+..++..+...+.-+  ++|.+..+.-..+..+|+.+.+.+
T Consensus       110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666667777663  569998888666556665555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.80  E-value=2e-07  Score=91.85  Aligned_cols=131  Identities=15%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      .+.|.+-++.|++..+.+.+.....++... .++.|++.||+|+|+++.++.+..+++++.....       ++.+.+.+
T Consensus       226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~  298 (382)
T PRK11128        226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------TALPWLIV  298 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHH
Confidence            344555567999998888865555555544 6899999999999999999999888887766543       45677777


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHH-hhhhhhHHHHHHHHHhHcCCChh
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILK-GYVGLSTAIFTDLCSALFADDPA  172 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~~~~  172 (398)
                      ..++.|++.+..+........+..+++++++.++.. ...++|..+.+.+.+.+.+....
T Consensus       299 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        299 IQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            788888888877666666677765567888888876 44677778888888888775433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.80  E-value=1.6e-07  Score=92.40  Aligned_cols=141  Identities=9%  Similarity=0.049  Sum_probs=96.9

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~  114 (398)
                      +.|.+.++.|.+..+.+++.....++... .++.|++.||+|+|+++..+.++..++.+... .        . ......
T Consensus       222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~--------~-~~~~~~  291 (381)
T PRK03633        222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S--------Q-AAMAPA  291 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h--------h-HHHHHH
Confidence            45666667899988888865555555554 78899999999999999988888777765442 1        0 111223


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHH
Q 015916          115 LCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVC  186 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~  186 (398)
                      .++.|.+....++.....+.+..|+ +++.+.+.....+++|+++.|.+.+.+.+...+.+.+.+.....++.
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~  364 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3444554444556666667788875 57778888888889999999999998887655555544444444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.80  E-value=1.6e-07  Score=95.04  Aligned_cols=129  Identities=11%  Similarity=0.022  Sum_probs=86.8

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      .+.|.+.+++|.+..+..+......+... ..++.|++.||+|+|++++.+.++.+++.+.+........  .+.+. ..
T Consensus       292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~--~~~~~-~~  368 (479)
T PRK10077        292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIVA-LL  368 (479)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc--ccHHH-HH
Confidence            45677878899887766665444444444 4789999999999999999999999998887764322111  11221 12


Q ss_pred             HHHHHhhhhhhhh-hHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          114 FLCMGGNSTTWMN-TAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       114 ~~~l~G~g~g~~~-~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      +.++.+.+.+... +.....+.+.||+ +||.++|+..+...+|+.+.+.+...+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            2223333333222 3456778899985 699999999998888888776665433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.79  E-value=4.4e-07  Score=92.06  Aligned_cols=155  Identities=18%  Similarity=0.192  Sum_probs=99.1

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhcccC-----chHHHHHHHHHHH-HHHHHHHHHHhcccCCchH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLIGSLEGL-VGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~~~~~-ig~~~~~~~~~~~~~~~~~  108 (398)
                      ...+.+++++|+|.++++.+.+...+...+.++.|++.||++     ||+.++++.++.. +++..+..     .+ ...
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~-----~~-~~~  120 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPG-----KV-SSA  120 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccc-----cc-chH
Confidence            344557889999999998877767777777888999999998     7888888877663 33332221     11 122


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHH---hhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILK---GYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~---~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i  185 (398)
                      ....+..++.+++.+..+.+.-....+..+++++...+...   ...++|..+.+.+.+.+.+...|+..+++.....++
T Consensus       121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll  200 (468)
T TIGR00788       121 KVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLL  200 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            22333677888888888888888999999854544333333   333478778777777666543455444443333333


Q ss_pred             HHhhhhcccc
Q 015916          186 CLGAIFFLRE  195 (398)
Q Consensus       186 ~~~~~~~l~~  195 (398)
                      .+...++++|
T Consensus       201 ~~~~~~~~~E  210 (468)
T TIGR00788       201 QLFVSNLSKE  210 (468)
T ss_pred             HHHHHHhccc
Confidence            3333444444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.78  E-value=3.4e-08  Score=95.59  Aligned_cols=141  Identities=20%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             HHhcccccccccHHH-HHHHcCCChhhHHHHHHH-HHhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 015916           25 AISGNNYTFSNYSDA-LKTLMNLTQLELNNLSVV-KDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK  102 (398)
Q Consensus        25 ~~~g~~~~~s~~~~~-l~~~~g~s~~~~~~i~~~-~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~  102 (398)
                      .+.|..-.++.+.|. ++++|+.+..+.+.+... ..++.+.=+.+|+++||+|.++++.+..+.++++..+.++.....
T Consensus       229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~  308 (417)
T COG2223         229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF  308 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc
Confidence            344555566777776 588999999998875444 444555679999999999999999999999998888777643221


Q ss_pred             cCCchHHHH----HHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          103 IQPLSYWQM----CVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       103 ~~~~~~~~l----~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      ....+.+..    ....+..|+|.|.    ....+...||++-|.+.|+..+..++|+...|.......+.
T Consensus       309 ~~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~  375 (417)
T COG2223         309 GHGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDL  375 (417)
T ss_pred             ccCcchHHHHHHHHHHHHHhccCcch----heeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHh
Confidence            101222222    2245666666664    45789999999999999999999999999999888887764

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.77  E-value=1.8e-07  Score=95.25  Aligned_cols=135  Identities=11%  Similarity=0.035  Sum_probs=92.2

Q ss_pred             cccHHHHH-HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           34 SNYSDALK-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        34 s~~~~~l~-~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      ..+.|.+. +++|++..+.+++.+...++... .++.|++.||+|+|+++.++.++..++.+..... .    ..+.+.+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~  369 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-G----GANVWVL  369 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-c----ccHHHHH
Confidence            34566654 68999999999977766777655 7899999999999999888877666655443321 1    1233333


Q ss_pred             HHHHHHH-hhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHH
Q 015916          112 CVFLCMG-GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKF  174 (398)
Q Consensus       112 ~~~~~l~-G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~  174 (398)
                      .+..++. +.+.+. .......+.+.+|+ +||+++|+..+...+|+.+.+.+.+.+.+..+++.
T Consensus       370 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~  433 (496)
T PRK03893        370 GLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGT  433 (496)
T ss_pred             HHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHH
Confidence            3332222 222232 23344567788885 69999999999999999999988888776544443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.76  E-value=1.3e-07  Score=90.61  Aligned_cols=194  Identities=12%  Similarity=0.006  Sum_probs=124.4

Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (398)
                      .+++.+.+..++.|.|.+...+..+.+++...|+ ++.+.+++.++.+++|+.+.|.+...++....             
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~-------------   74 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGA-------------   74 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------------
Confidence            3577777888999999999999999999999874 68999999999999999999999887653100             


Q ss_pred             HHHhhhhcccccCCCCCCch--hhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccc
Q 015916          185 VCLGAIFFLRETTPASTVDE--EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSF  262 (398)
Q Consensus       185 i~~~~~~~l~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~  262 (398)
                               .+  ....+.+  .....|+..+...+.+.                          + ++..... .    
T Consensus        75 ---------~~--~~~~~~~~~~~~~~~~~~yl~ia~~~--------------------------~-~~~i~~~-~----  111 (310)
T TIGR01272        75 ---------GD--LSMQVATANAEAAKVHTPYLLLAGAL--------------------------A-VLAIIFA-F----  111 (310)
T ss_pred             ---------cc--hhhhhhhhhHHHHHHHHHHHHHHHHH--------------------------H-HHHHHHH-H----
Confidence                     00  0000000  01234544432221110                          0 0000000 0    


Q ss_pred             cccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHH
Q 015916          263 IKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFL  342 (398)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~  342 (398)
                      .+     .|+.++   +  +.++                   ++       ++  +   +...++.+|+|.+|+..+.++
T Consensus       112 ~~-----~p~~~~---~--~~~~-------------------~~-------~~--~---~~~~~~~~~~~~~~l~~~~~f  150 (310)
T TIGR01272       112 LP-----LPELQE---A--DVAR-------------------VS-------SG--D---TTQKTSAFQFTHLVLGALGIF  150 (310)
T ss_pred             cc-----CCCCCc---c--cccc-------------------cc-------cc--c---ccchhhHHhhHHHHHHHHHHH
Confidence            00     110000   0  0000                   00       00  0   011235788999999999999


Q ss_pred             hcccceeeeeechHHHHHHh---CCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          343 CGVGTGLAVMNNMGQIGLAL---GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       343 ~~~~~g~~~~~n~~~i~~~~---g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +..+....+.+.++.++.+.   |.+  +.+...+.+..+..+||++.+++.||+++|+
T Consensus       151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~  209 (310)
T TIGR01272       151 VYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR  209 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            99888888888899888753   665  3677899999999999999999999998765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.75  E-value=8.9e-08  Score=97.34  Aligned_cols=157  Identities=15%  Similarity=-0.024  Sum_probs=92.4

Q ss_pred             ccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchH-------HHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           35 NYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPI-------ILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        35 ~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~-------~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      .+.|. +.+++|++..+.+.+.....++... .++.|++.||+|+|+       ...+..++.++..++....       
T Consensus       273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-------  345 (476)
T PLN00028        273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA-------  345 (476)
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc-------
Confidence            34555 4677899999988876666666654 789999999998762       2222222222222222111       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i  185 (398)
                      .+.+...+..++.+++.+...........+..|++||.+.|+...+..+|+.+.+.+.. .-....+...+++..+..++
T Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        346 NSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHH
Confidence            23333333333444443333333333444556788999999998888888888887654 11122355555555666677


Q ss_pred             HHhhhhcccccCCC
Q 015916          186 CLGAIFFLRETTPA  199 (398)
Q Consensus       186 ~~~~~~~l~~~p~~  199 (398)
                      +.++.+++|.+.+.
T Consensus       425 ~~~~~~~~~~~~~~  438 (476)
T PLN00028        425 CTLPVAFIHFPQWG  438 (476)
T ss_pred             HHHHHHheeccchh
Confidence            77777777755443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=9.1e-09  Score=94.39  Aligned_cols=130  Identities=15%  Similarity=0.112  Sum_probs=96.9

Q ss_pred             HHhccccccc---ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHH
Q 015916           25 AISGNNYTFS---NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVV   99 (398)
Q Consensus        25 ~~~g~~~~~s---~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~   99 (398)
                      +..|..++|-   ....+++.+.+++.++..++.+...--.++ ..++|+++|| +|.|.-.++-+....+|.++++.  
T Consensus        52 lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~--  129 (459)
T KOG4686|consen   52 LGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAA--  129 (459)
T ss_pred             hcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHh--
Confidence            3456666663   334456677778887877766666555544 7899999997 88888777777777788887753  


Q ss_pred             hcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHH
Q 015916          100 SRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAI  158 (398)
Q Consensus       100 ~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i  158 (398)
                       +.+. +.+|.+..+|++.|+|.-..-++-.++...||. |+-+.+.|+..+.-.+|+.+
T Consensus       130 -Ggi~-~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv  187 (459)
T KOG4686|consen  130 -GGIS-HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV  187 (459)
T ss_pred             -chHH-HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence             2222 578999999999999886555677888899998 56899999998888888764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.73  E-value=1.6e-07  Score=92.26  Aligned_cols=128  Identities=15%  Similarity=0.082  Sum_probs=89.4

Q ss_pred             cHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      +.|. +++++|++..+.+++.....++... .++.|++.||+|+|+.+.++.+...+........  .    .+.+.+.+
T Consensus       260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~  333 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--G----ANVAVLGL  333 (405)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--C----CchHHHHH
Confidence            3444 5678999999999876666666654 7899999999999999988876654333222111  1    23444444


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      ..++.+...+.........+.+.+|+ +||++.|+......+|+.+.+++.+.+.+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       334 GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43444433333334455677899985 699999999999999999999999888764

>PRK15075 citrate-proton symporter; Provisional

Probab=98.73  E-value=4.4e-07  Score=91.04  Aligned_cols=135  Identities=16%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             ccccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHH-HHHHHHHHHhcccCCch
Q 015916           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV-GYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        31 ~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~i-g~~~~~~~~~~~~~~~~  107 (398)
                      +....+.|.+ ++.+|++..+.+++.....++... .++.|++.||+|+|++..++..+..+ ++.........    .+
T Consensus       255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~  330 (434)
T PRK15075        255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA----PS  330 (434)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC----Cc
Confidence            3445567775 556899998888776666666654 78999999999999998877555433 22111111111    22


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHh-hhhhhHHHHHHHHHhHcCC
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG-YVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~-~~glg~~i~~~l~~~~~~~  169 (398)
                      +..+.+..++.+++.+...........+.+|+ +||.+.|+... +..+++.+.|.+...+.+.
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            32332333334444444434445667899985 59999998644 3445577788888776654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.72  E-value=1.9e-07  Score=90.28  Aligned_cols=128  Identities=12%  Similarity=-0.035  Sum_probs=100.0

Q ss_pred             ccHHHHHH-HcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           35 NYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        35 ~~~~~l~~-~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      .+.|.+.+ .+|++..+.+.+.....++... .++.|++.||+|+|+.+..+.++.+++.+...+.  .    ++.+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--P----PNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--c----hhHHHHH
Confidence            34566544 4899999999876666666654 7889999999999999998877777777666543  1    1356666


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +..++.|++.+..+......+.+.+|+ +||++.|+......+++.+.+.+.+.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888887777777888999985 69999999999999999999888877654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.72  E-value=2.5e-07  Score=93.28  Aligned_cols=165  Identities=10%  Similarity=-0.022  Sum_probs=95.4

Q ss_pred             cccccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhccc--CchHHH-HHHHHHHHHHHHHHHHHHhcccC
Q 015916           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        30 ~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~-~~g~~~~~ig~~~~~~~~~~~~~  104 (398)
                      .|....+.|.+ +++.|++..+.+.......++... .++.|++.||+  |+|+.. .....+..++.+.+...  . . 
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~--~-~-  344 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN--P-A-  344 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh--c-c-
Confidence            34555677775 566899998888866665566654 78999999999  555432 22223333333332221  0 1 


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHH-HHHHHHhHcCCChhHHHHHHHHHH
Q 015916          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAI-FTDLCSALFADDPAKFLFMLAIVP  182 (398)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i-~~~l~~~~~~~~~~~~~~~~~~~~  182 (398)
                       .+.+...+..+..|.+.............+.+|+ +||+++|+......+|+++ .+.+.+.+.+..+++..+.+....
T Consensus       345 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~  423 (452)
T PRK11273        345 -GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  423 (452)
T ss_pred             -cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence             1222222222333332211111222345688885 6999999998877787766 467777776654455555555555


Q ss_pred             HHHHHhhhhcccccCCC
Q 015916          183 FVVCLGAIFFLRETTPA  199 (398)
Q Consensus       183 ~~i~~~~~~~l~~~p~~  199 (398)
                      .+++++....+...|..
T Consensus       424 ~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        424 SILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHHHHHHHHHHhccccc
Confidence            66666666666555543

>PRK09848 glucuronide transporter; Provisional

Probab=98.72  E-value=2.8e-07  Score=92.80  Aligned_cols=119  Identities=9%  Similarity=-0.029  Sum_probs=68.7

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhccc----CchHHH-HHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRI----PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~----G~r~~~-~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      ...+++.+|++..+++.+.....+... ..|+.|+++||.    |||+.. .++.+...+..+++.....+.......+.
T Consensus        32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            345788899999999997666666665 589999999996    667654 56666555544443221111111112222


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhh--ccCCcchHHHHHhhhhhh
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNF--RRNRGPVSGILKGYVGLS  155 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~F--p~~RG~a~gi~~~~~glg  155 (398)
                      +++...+.+++.++..++......+.-  |++|....++-..+..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~  158 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLT  158 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            333345556666665554444434333  346877766655443443

>TIGR00895 2A0115 benzoate transport

Probab=98.71  E-value=1.8e-07  Score=91.49  Aligned_cols=129  Identities=16%  Similarity=0.081  Sum_probs=93.0

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +....+.|.+.+++|++..+.+.+.....++... .++.|++.||+|+|+.+... .+..+...+.... .     .+.+
T Consensus       267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-----~~~~  339 (398)
T TIGR00895       267 YFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGST-L-----FSPT  339 (398)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHH-h-----hCHH
Confidence            3444566778888999999888866666666654 78999999999999554443 3333333332221 1     2344


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      ..++..++.|++.+..+......+.+.+|+ +||++.|+..+...+|+++.+.+.+.+
T Consensus       340 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       340 LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            555666777888877777778889999985 699999999999999999988887653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.71  E-value=2.4e-07  Score=94.63  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=103.3

Q ss_pred             cccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        32 ~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+..+.|. +++.+|+|..+.+.......++... +++.|++.||+|+|+.+..|.++..++++.+...  ...  .+.+
T Consensus       277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~--~~~--~~~~  352 (495)
T PRK14995        277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT--DFS--TQQW  352 (495)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh--cCC--CchH
Confidence            33344454 5777999999999976666676654 7999999999999999999998888888766543  111  2445


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ...+..++.|+|.|....+....+.+..|+ ++|.+.++......+|+.+.+.+.+.++.
T Consensus       353 ~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        353 QAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555677888999988777777778888885 69999999999999999999888887654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.70  E-value=2.9e-07  Score=89.54  Aligned_cols=152  Identities=13%  Similarity=0.038  Sum_probs=91.7

Q ss_pred             cccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHH-HHHHHHHHHHHHHHHH-HhcccCCch
Q 015916           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL-IGSLEGLVGYGAQWLV-VSRKIQPLS  107 (398)
Q Consensus        32 ~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~-~g~~~~~ig~~~~~~~-~~~~~~~~~  107 (398)
                      .+..+.|. +++++|.+..+.+++.....++... .++.|++.||+|+|+... .......++.+..... ..... ..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  311 (399)
T TIGR00893       233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY-VNI  311 (399)
T ss_pred             HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc-chh
Confidence            33445555 4677899999988866666666654 789999999999996111 1111111111111110 00000 012


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCCh-hHHHHHHHHHHHHH
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVV  185 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~i  185 (398)
                      .+.......+.+.+.+ ..........+.+|+ +||++.|+......+|+.+.+.+.+.+.+... +...+.+.....++
T Consensus       312 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~  390 (399)
T TIGR00893       312 PYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI  390 (399)
T ss_pred             HHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHH
Confidence            3333333334444444 456677788899985 69999999999999999999999988887643 55444444433333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.70  E-value=6.7e-07  Score=88.22  Aligned_cols=144  Identities=10%  Similarity=-0.098  Sum_probs=91.8

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHH-hhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKD-IGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~-~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~  114 (398)
                      .+++.++.|++.++++++..... +.... .++.|++.||+|+|+++.++.++..+..+.. +.........+.+.++..
T Consensus       231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW-FAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHcccCCcHHHHHHH
Confidence            34444568999999998644443 45555 5799999999999999988877664433322 211111000122333333


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHH
Q 015916          115 LCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV  181 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~  181 (398)
                      ..+.+++.+....+......+..+  ++||+..++.++..++|..+.+.+.+.+.+..+++..+..+..
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~  378 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTV  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            444455556555555566667765  4589999999999999999999998888764344444444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.70  E-value=7e-07  Score=87.94  Aligned_cols=150  Identities=9%  Similarity=0.052  Sum_probs=93.2

Q ss_pred             HHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Q 015916           38 DALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~  116 (398)
                      |.+++.+|++..+.+++.....++... .++.|++.||+|+|+.+.++..+..+++++.... .     ++.+...+..+
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-~-----~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-G-----GMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-H-----hhHHHHHHHHH
Confidence            445667899999999876666666654 7999999999999999999988888887655432 1     12333333344


Q ss_pred             HHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhhhhcc
Q 015916          117 MGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFFL  193 (398)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~l  193 (398)
                      +.+.|......+......+..+++|..+.+.......+|.++.+.+.+.+++. ..++..+....+..++.+.+....
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            44444433333333333344433333333344566789999999999888874 345555555544444444444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.66  E-value=2.7e-07  Score=93.42  Aligned_cols=131  Identities=12%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             ccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           35 NYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        35 ~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      .+.|.+ ++.+|++..+.+++.....++... .++.|++.||+|+|+.+.++..+.+++...+.+....   +.+.+.+.
T Consensus       276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~  352 (485)
T TIGR00711       276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP---DTPFLAIA  352 (485)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC---CCCHHHHH
Confidence            345554 566899999999876666666654 7999999999999999999998888888776532111   13455555


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ...++.|+|.+..+.+......+.+| ++||.+.|+......+|+.+.+.+.+.+++
T Consensus       353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       353 LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888776666666778888 469999999999999999999998888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11043 putative transporter; Provisional

Probab=98.66  E-value=1.8e-06  Score=85.39  Aligned_cols=137  Identities=15%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +.+..+.|.+.+++|++..+.++......++... +...+++.||+|+|+....+.+...++.+.+........  .+.+
T Consensus       220 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  297 (401)
T PRK11043        220 FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH--PSLV  297 (401)
T ss_pred             HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcHH
Confidence            3444456777777899999988855555555544 678899999999999877766666555444332211111  2334


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      .+.+...+.|.+.+..+........+.+|++||++.|+..+....++...+.+.+.+.+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        298 PLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            444445566777777766666666677888999999999988777888888888877664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.65  E-value=1.9e-06  Score=84.18  Aligned_cols=147  Identities=10%  Similarity=0.080  Sum_probs=86.5

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHH-HHHHhcccCCchHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQ-WLVVSRKIQPLSYWQMCVFLCM  117 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~-~~~~~~~~~~~~~~~l~~~~~l  117 (398)
                      +.+++|++..+.+++.....++... .++.|++.||+|+|+++.++..+..+..+.. .....+    .+++...+...+
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  296 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD----LGFWALVVGVAA  296 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHH
Confidence            5677899999999866666666654 7899999999999999998887654432222 211111    234443333333


Q ss_pred             HhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhh-hhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhc
Q 015916          118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGY-VGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (398)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~-~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  192 (398)
                      .+.+.+.........+.+..|++||.+.++.... +++|+.+.+.+. .....+.+.+....++ ..+.+++..++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~  370 (377)
T PRK11102        297 FVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS-LAPFTSAWPMVWSMAF-CSILSILFYLY  370 (377)
T ss_pred             HHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH-hccCCChHHHHHHHHH-HHHHHHHHHHH
Confidence            3333444444445556677788899999997654 556666655543 3333333444343333 33333333333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.65  E-value=1.4e-06  Score=86.31  Aligned_cols=134  Identities=10%  Similarity=-0.056  Sum_probs=94.0

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHH-HHHHHHHHHHhcccCCchHHHHHHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL-VGYGAQWLVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~-ig~~~~~~~~~~~~~~~~~~~l~~~  114 (398)
                      .|.+.+++|++..+.+.+.....++... .++.|++.||.+ |+....+..+.. .+.++....       .+.+.+.+.
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~  311 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG-------SDKIVATGV  311 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Confidence            3657778899999888866666666655 689999999965 444444444433 333333221       245666667


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHH
Q 015916          115 LCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML  178 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~  178 (398)
                      .++.|++.+..+....+.+.+..|++++++.++..+...+|..+.+.+.+.+++..+....+..
T Consensus       312 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~  375 (394)
T PRK10213        312 AIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLML  375 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence            7778888887776667678888888888888888888899999999999998875444333333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.4e-06  Score=87.48  Aligned_cols=169  Identities=17%  Similarity=0.099  Sum_probs=107.5

Q ss_pred             HhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015916           26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        26 ~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~  104 (398)
                      ..|. +....|...+-++.|++..+..+......+... ..+.+.++.||+|||++++++..++.+..+++.....-...
T Consensus       283 ~sGi-~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~  361 (485)
T KOG0569|consen  283 FSGI-NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNS  361 (485)
T ss_pred             hcCc-ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 344456677888899999988887666666554 47999999999999999999999998877776543221110


Q ss_pred             C-chHHHHH---HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHH
Q 015916          105 P-LSYWQMC---VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA  179 (398)
Q Consensus       105 ~-~~~~~l~---~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~  179 (398)
                      . ...+.++   ++..+..++.|.. +.+.-..+|.||+ .|..|.++......++.++....+..+.+.-+. +.+++-
T Consensus       362 ~~~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF  439 (485)
T KOG0569|consen  362 FGSWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILF  439 (485)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHH
Confidence            0 0111122   2334444555544 4566789999996 599999999999888888776665555443222 333333


Q ss_pred             HHHHHH-HHhhhhcccccC
Q 015916          180 IVPFVV-CLGAIFFLRETT  197 (398)
Q Consensus       180 ~~~~~i-~~~~~~~l~~~p  197 (398)
                      +++.++ .+.....+||..
T Consensus       440 ~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  440 VIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHhCcccC
Confidence            333333 333333444444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.62  E-value=5.7e-06  Score=82.13  Aligned_cols=59  Identities=15%  Similarity=0.073  Sum_probs=42.0

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCc-hHHHHHHHHHHHHHHHHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPA-PIILLIGSLEGLVGYGAQ   95 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~-r~~~~~g~~~~~ig~~~~   95 (398)
                      .+.+-++.|+|..|++.+.+...+...+ .++.|.+.||+++ |+.+.+..++.++..+..
T Consensus        25 ~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen   25 LPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3445567899999999987777777765 6899999999864 556656555555544333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.61  E-value=7.4e-07  Score=87.72  Aligned_cols=123  Identities=17%  Similarity=0.059  Sum_probs=64.9

Q ss_pred             HHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHH--HHHHHHHH-HHHhcccCCchHHHHHHH
Q 015916           39 ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEG--LVGYGAQW-LVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        39 ~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~--~ig~~~~~-~~~~~~~~~~~~~~l~~~  114 (398)
                      -++++.|+|.+|++.+.++..+..+ .+|+.|.+.||+|.||-++......  ..+-+..+ +...-   ..+.   .+.
T Consensus        33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll---~~n~---~lg  106 (412)
T PF01306_consen   33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL---QSNF---WLG  106 (412)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH---HTT----HHH
T ss_pred             HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHH
Confidence            3567799999999997777777765 4899999999999777654433222  22333222 11000   0122   223


Q ss_pred             HHHHhhhhhhhhhHHHHHHH---HhhccCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          115 LCMGGNSTTWMNTAVLVTCI---RNFRRNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~---~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .++.|+..++.+.+......   +-..++.+.=-|=.-+..++|-++.+.+.+.++
T Consensus       107 ~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~  162 (412)
T PF01306_consen  107 AIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILF  162 (412)
T ss_dssp             HHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence            33344444444433333332   222333455555555555666666666666654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.61  E-value=1.6e-06  Score=88.91  Aligned_cols=149  Identities=14%  Similarity=0.073  Sum_probs=111.7

Q ss_pred             HHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Q 015916           37 SDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (398)
Q Consensus        37 ~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~  114 (398)
                      .|.+ ++++|.+....+++..+..+|+++ ++..+++.+|+++++++..+.+.++++.+.+++.       ++.+..++.
T Consensus       241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------~~~~~~~~~  313 (524)
T PF05977_consen  241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------PSFWLALIA  313 (524)
T ss_pred             hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------hHHHHHHHH
Confidence            4554 678999999999988888899976 6899999999999999999998888888877664       466777777


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhc
Q 015916          115 LCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (398)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  192 (398)
                      .++.|.+.....+...+.+++.-|++ ||+++++..+....+..+.+.+.+.+.+..+.+..+.++.+..++..+....
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            77888887777667777788888964 9999999988777777777777776665433344444444444444444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.58  E-value=1.1e-06  Score=88.19  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             cccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhccc--CchHHH-HHHHHHHHHHHHHHHHHHhcccCCc
Q 015916           32 TFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPL  106 (398)
Q Consensus        32 ~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~-~~g~~~~~ig~~~~~~~~~~~~~~~  106 (398)
                      ....+.|.+ ++++|++..+.+.......++..+ .++.|++.||+  ++|+.. ....+...+........  . .  .
T Consensus       261 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~-~--~  335 (434)
T PRK11663        261 AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P-F--A  335 (434)
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c-c--c
Confidence            334456665 477899999988866666666655 78999999998  333322 22211112122111111  1 0  1


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHH
Q 015916          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPF  183 (398)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~  183 (398)
                      +.+...+..+..|++.............+.+|+ +||+++|+......+|+++.|++.+.+.+...+...+.......
T Consensus       336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~  413 (434)
T PRK11663        336 SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAA  413 (434)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHH
Confidence            222222222233332211111122345788874 79999999999999999999999998887544544443333333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.57  E-value=1.2e-06  Score=86.57  Aligned_cols=140  Identities=12%  Similarity=0.115  Sum_probs=93.7

Q ss_pred             CCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhh
Q 015916           45 NLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTT  123 (398)
Q Consensus        45 g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g  123 (398)
                      +.+..+.+.+.....+... ..+..|++.||+|+|+.+.++.++.++++.+....       ++.+.+++..++.|++.+
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~l~g~~~~  322 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------TTALEVVILKMLHAFEVP  322 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHH
Confidence            4555566665444444443 46889999999999999999999888877765542       356666667778887766


Q ss_pred             hhhhHHHHHHHHhhccC-CcchHHH-HHhhhhhhHHHHHHHHHhHcCCCh-hHHHHHHHHHHHHHHHhhhh
Q 015916          124 WMNTAVLVTCIRNFRRN-RGPVSGI-LKGYVGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVVCLGAIF  191 (398)
Q Consensus       124 ~~~~~~~~~~~~~Fp~~-RG~a~gi-~~~~~glg~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~  191 (398)
                      ...........+.+|++ |+++.+. .+....+|+.+.+.+.+.+.+..+ ...++..+++..+.+++..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       323 FLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            55444555566666654 6666655 456778999999999888887533 34444455555555554443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.57  E-value=1.4e-06  Score=83.42  Aligned_cols=118  Identities=16%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             HcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhh
Q 015916           43 LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (398)
Q Consensus        43 ~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (398)
                      ++|++.++.+...+....+... .+..+++.||+|+|+.+.++..+..++.++....       ++.+.+ ....+.|++
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-------~~~~~~-~~~~l~g~~  243 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-------HGYVAM-WFVLALGLF  243 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCHHHH-HHHHHHHHH
Confidence            3799999988876666666655 6899999999999999998888887776554432       112222 233467888


Q ss_pred             hhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          122 TTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      .+..++.......+.+|++.+.+.++.. ...+|+++.|++.+.+.+.
T Consensus       244 ~s~i~P~~~s~a~~~~~~~~~~asai~~-~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       244 NSIMFPTIFSLALNALGRHTSQGSGILC-LAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHHhcchHHHHHHHHHHHh
Confidence            8888888788888999988888888864 4568999999998887764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=98.56  E-value=3.9e-06  Score=84.98  Aligned_cols=123  Identities=10%  Similarity=-0.116  Sum_probs=79.7

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcc----cCchHHHH-HHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAPIILL-IGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr----~G~r~~~~-~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      +.+.+|++...++++....-+-- ..-|+.|.++||    +|||+..+ +|.+.+++++++++... +.........+++
T Consensus        36 yt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~~~~~y~~~  114 (460)
T PRK11462         36 YTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMNGKMIYAAI  114 (460)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcchHHHHHHH
Confidence            56789999999998655544444 457999999996    78876555 56678888777665421 1011111233333


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHH
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLC  163 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~  163 (398)
                      ..++...+..+...+-.+...+.-+  ++|.+..++-..+..+|+.+.+.+.
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666666666666665  5699999998887777766655543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.54  E-value=2.6e-06  Score=86.32  Aligned_cols=158  Identities=16%  Similarity=0.135  Sum_probs=109.7

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCch--HHHHHHHHHHHHHHHHHHH-HHhcccCCchHHHHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAP--IILLIGSLEGLVGYGAQWL-VVSRKIQPLSYWQMC  112 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r--~~~~~g~~~~~ig~~~~~~-~~~~~~~~~~~~~l~  112 (398)
                      ....++++|++..|+..+.....+.+.. +.+.|++.||+|+|  +++.++.++..+-.+.-.+ ........++.+.++
T Consensus       305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~  384 (477)
T PF11700_consen  305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW  384 (477)
T ss_pred             HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence            3335679999999988877777776654 78999999999999  8888877766432222111 001111114567888


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhhh
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAI  190 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~  190 (398)
                      ++.++.|+..|..+..+-++.++.-|+ +.+.-.|+.....-.++.+.|.+.+.+.+. +..++-+..-.+..+++++..
T Consensus       385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999996 689999999887777777777777776653 223444443344444555555


Q ss_pred             hccc
Q 015916          191 FFLR  194 (398)
Q Consensus       191 ~~l~  194 (398)
                      +.++
T Consensus       465 ~~v~  468 (477)
T PF11700_consen  465 FFVD  468 (477)
T ss_pred             hhcc
Confidence            5543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10054 putative transporter; Provisional

Probab=98.53  E-value=3.3e-06  Score=83.70  Aligned_cols=150  Identities=9%  Similarity=-0.030  Sum_probs=96.9

Q ss_pred             HcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhh
Q 015916           43 LMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (398)
Q Consensus        43 ~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (398)
                      +.+.+....+++.....+... ..++.|++.||+++|+.+.++.++..+++....+. .     ++.+.+.+..++.|+|
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~g  311 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-G-----NSLLLWGMSAAVFTVG  311 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-c-----hHHHHHHHHHHHHHHH
Confidence            445566666654444433333 36888999999999999999988888888766542 1     2455555666777777


Q ss_pred             hhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChh-HHHHHHHHHHHHHHHhhhhcccccCCC
Q 015916          122 TTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPA-KFLFMLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      .+...+.....+.+.-|+ +||++.|... ...+|.++.+.+.+.+.+.... ..+..++...++..++...-.+++|+.
T Consensus       312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (395)
T PRK10054        312 EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARPWG  390 (395)
T ss_pred             HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCccc
Confidence            765444444556666675 6899988765 4458888999888888875433 334444444444444444445555543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.52  E-value=4.1e-06  Score=83.06  Aligned_cols=147  Identities=14%  Similarity=0.149  Sum_probs=92.3

Q ss_pred             HHHHHHcCCChhhHHHHHH-HHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH-
Q 015916           38 DALKTLMNLTQLELNNLSV-VKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF-  114 (398)
Q Consensus        38 ~~l~~~~g~s~~~~~~i~~-~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~-  114 (398)
                      +.+.+++|++..+.+++.. ...++... .++.|++.||+|+|+.+.++.+...+..+........  + ++.+.+.+. 
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--~-~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--P-KHLWTMALAI  310 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--C-CcHHHHHHHH
Confidence            4467779999999998643 33344444 6899999999999998887777766554433221111  0 233443332 


Q ss_pred             ---HHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhh
Q 015916          115 ---LCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI  190 (398)
Q Consensus       115 ---~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~  190 (398)
                         .+..|++.+..+......+.+.+|.+   ..++..+..++|..+.+++.+.+.+..+++.++.++....++.++..
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence               24555666665666666677777643   34555555677877777777777776566666666665555554444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.50  E-value=1.7e-05  Score=80.44  Aligned_cols=73  Identities=14%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             chHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHH-HhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       323 ~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~-~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      .+.+++.|.|+...+.++.++..-...+++.....+.+ .+|+++  ......+..+.+++|.+++|++.||++.|
T Consensus       272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k  347 (477)
T PF11700_consen  272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK  347 (477)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            46788888888888888777665444445555555555 578875  34566778899999999999999999998

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.48  E-value=8.1e-06  Score=80.53  Aligned_cols=127  Identities=13%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      +++.+|++..+.+++.....++.+. +++.+++.||+|++...  +.....++.+.........  ..+.+.+.+..++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  309 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFG--VMNVWTLLVPAALF  309 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence            4566899999988876666666655 68899999999833322  2222222222221110000  02345556667778


Q ss_pred             hhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCC
Q 015916          119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD  170 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~  170 (398)
                      |.|.+..++.......+.+|+++|.+.++..+...+|+.+.+.+...+....
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            8888877777777788889999999999999999999999998877765443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.48  E-value=2.6e-06  Score=95.68  Aligned_cols=121  Identities=17%  Similarity=0.100  Sum_probs=94.0

Q ss_pred             HHHHHcCCChh-hHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Q 015916           39 ALKTLMNLTQL-ELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (398)
Q Consensus        39 ~l~~~~g~s~~-~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~  116 (398)
                      .+++.+|++.. +.+++.+...++.++ +++.|++.||+++|+++.++.++.+++.+++.+.       .+.+.+++..+
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  330 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------PSLASVLVLFF  330 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------hhHHHHHHHHH
Confidence            35778999998 888877777777765 7899999999999999999888888777766543       34556666677


Q ss_pred             HHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          117 MGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      +.|++.+....+....+.+.+|+ +||++.|+......+|+.+.+.+...+
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            78888887766777778888885 699999999988888876665554433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.48  E-value=2.9e-06  Score=82.54  Aligned_cols=150  Identities=13%  Similarity=0.078  Sum_probs=106.9

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      -+.++||++.|+..+.....+.+. .++++|++.||+|.|+++.++.++..+..+...+. .      .-..+.++.++.
T Consensus       279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-~------~~~~f~i~gll~  351 (438)
T COG2270         279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-E------GELDFWILGLLV  351 (438)
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-c------ccHHHHHHHHHH
Confidence            356999999999998777777775 47999999999999999999999888776665443 1      122345567788


Q ss_pred             hhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhhhhccccc
Q 015916          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFFLRET  196 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~l~~~  196 (398)
                      |...|-....+-.+.++..|+ |-|+..|+.+...-.++.+.|.+.+.+.+- +..+.-+..-++...++++..+.+|++
T Consensus       352 g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         352 GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            888888888899999999996 569999999887666666666665554431 223333333333444555555555554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.48  E-value=2.3e-06  Score=83.20  Aligned_cols=119  Identities=9%  Similarity=0.040  Sum_probs=84.9

Q ss_pred             ccHHHHHHHcCCChhhHHHHHH-HHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc----CCchH
Q 015916           35 NYSDALKTLMNLTQLELNNLSV-VKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI----QPLSY  108 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~-~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~----~~~~~  108 (398)
                      .+.|++.+++|++.++.+.+.. ...+.... .+++|++.||+|+|+.+.++.++..+++....+......    ..++.
T Consensus       230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (356)
T TIGR00901       230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL  309 (356)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            3455554559999999887544 34345544 689999999999999999999888877665543211100    00134


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhh
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVG  153 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~g  153 (398)
                      +.+....++.+++.+..+.+......+.+|+ +||+..|+..+..+
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            5555667777888888888888999999985 69999999877654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.47  E-value=6.7e-06  Score=81.60  Aligned_cols=151  Identities=13%  Similarity=0.098  Sum_probs=101.6

Q ss_pred             HHHHcC-CChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH----HH
Q 015916           40 LKTLMN-LTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM----CV  113 (398)
Q Consensus        40 l~~~~g-~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l----~~  113 (398)
                      .-++.| .+....+...+...+.=+ +-...+++..|+|.|++++++.+..++=+.+.+...      ++.+..    .+
T Consensus       233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------~~~~~~~~~~~l  306 (400)
T PF03825_consen  233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------DPWPFIVALQLL  306 (400)
T ss_pred             HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------CCcHHHHHHHHH
Confidence            344555 666666653333333323 356889999999999999999999888777766531      122221    22


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHh-hhhhhHHHHHHHHHhHcCCCh------h-HHHHHHHHHHHH
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKG-YVGLSTAIFTDLCSALFADDP------A-KFLFMLAIVPFV  184 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~-~~glg~~i~~~l~~~~~~~~~------~-~~~~~~~~~~~~  184 (398)
                      ...+.|+.-++.+.++..++.+..|++ |+++.|+..+ ..|+|+.+.+.+.+.+++...      + ......+++..+
T Consensus       307 ~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~  386 (400)
T PF03825_consen  307 GQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALV  386 (400)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence            345688888888889999999999964 9999999876 479999999999998887521      1 233333444444


Q ss_pred             HHHhhhhccccc
Q 015916          185 VCLGAIFFLRET  196 (398)
Q Consensus       185 i~~~~~~~l~~~  196 (398)
                      +.++..++.||+
T Consensus       387 ~~~~f~~~fk~~  398 (400)
T PF03825_consen  387 ILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHhhccCC
Confidence            444444555544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.46  E-value=2.8e-06  Score=85.87  Aligned_cols=159  Identities=14%  Similarity=0.127  Sum_probs=91.9

Q ss_pred             ccccccHHHH-HHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHH--------HHHHHHHHHHHHHHHHHHHh
Q 015916           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPII--------LLIGSLEGLVGYGAQWLVVS  100 (398)
Q Consensus        31 ~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~--------~~~g~~~~~ig~~~~~~~~~  100 (398)
                      +.+..+.|.+ ++.+|.+..+.++......++.. ..+++|++.||+++|+.        +..+......+.........
T Consensus       278 ~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (465)
T TIGR00894       278 TILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL  357 (465)
T ss_pred             HHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4445567765 67789999999987666566665 47899999998765421        11111111111111111110


Q ss_pred             cccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCC---hhHHHHH
Q 015916          101 RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD---PAKFLFM  177 (398)
Q Consensus       101 ~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~---~~~~~~~  177 (398)
                        .  .+.+...+...+.+.+.+...........+..|+.+|.+.|+......+|+.+.+.+.+.+.+.+   .|...+.
T Consensus       358 --~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~  433 (465)
T TIGR00894       358 --S--AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL  433 (465)
T ss_pred             --C--CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHH
Confidence              0  12222223333333333333333334455667888999999999999999999999988877643   3555555


Q ss_pred             HHHHHHHHHHhhhhcc
Q 015916          178 LAIVPFVVCLGAIFFL  193 (398)
Q Consensus       178 ~~~~~~~i~~~~~~~l  193 (398)
                      +..+..+++.+...++
T Consensus       434 ~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       434 IMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHHHHHHeeee
Confidence            5555555555444444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.46  E-value=1.2e-06  Score=86.93  Aligned_cols=154  Identities=12%  Similarity=0.048  Sum_probs=116.7

Q ss_pred             HHHHHHHcC----CChhhHHH-HHHHHHhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           37 SDALKTLMN----LTQLELNN-LSVVKDIGKAFGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        37 ~~~l~~~~g----~s~~~~~~-i~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      .-.+..+++    ++++++.- ++....+..+..+++||++|| .|+|+++.+|++++.+|+++++..-   .  .....
T Consensus        45 ~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~--~~~~g  119 (498)
T COG3104          45 ILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---V--SGPGG  119 (498)
T ss_pred             HHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---c--ccccH
Confidence            334555555    99988766 455555555567899999999 7999999999999999999987631   0  12445


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhcc---CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  187 (398)
                      +++...+.++|.|..=......+.+.+|+   ||-.+.++...+..+|+.+.+.+...+-+...|+..+-++.+-...++
T Consensus       120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl  199 (498)
T COG3104         120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL  199 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            66666677789998766667778899973   478888888899999999998888887776677777777777777777


Q ss_pred             hhhhcccc
Q 015916          188 GAIFFLRE  195 (398)
Q Consensus       188 ~~~~~l~~  195 (398)
                      +..++.|+
T Consensus       200 ~~f~~~~r  207 (498)
T COG3104         200 VIFLLGRR  207 (498)
T ss_pred             HHHHHccc
Confidence            77766653

>PRK10133 L-fucose transporter; Provisional

Probab=98.46  E-value=4.7e-06  Score=83.83  Aligned_cols=120  Identities=9%  Similarity=-0.044  Sum_probs=91.1

Q ss_pred             HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHh
Q 015916           41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (398)
Q Consensus        41 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (398)
                      ++.+|++..+.++......+++.. .++.|++.||+|+|+++..+.++..++.++..+.       .+.+. .....+.|
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~l~g  358 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GGHVG-LIALTLCS  358 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------CChHH-HHHHHHHH
Confidence            567899999999976666677665 6899999999999999998877776665544332       12222 23455678


Q ss_pred             hhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      ++.+..++.......+.+|++.+.+.++... ..+|+++.+++.+.+.+.
T Consensus       359 lg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHh
Confidence            8889888888888889999888899998875 447888888888877654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.46  E-value=3.8e-06  Score=80.45  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             HHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhh
Q 015916           42 TLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN  120 (398)
Q Consensus        42 ~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  120 (398)
                      +++|++..|++.+...+..... ++++.|.+.||+|||+..++-+++..++++..-        +++++.+++.|++.|+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--------~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--------SSNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHH
Confidence            6799999999997777777665 599999999999999999998888888876432        1568889999999999


Q ss_pred             hhhhhhhHH
Q 015916          121 STTWMNTAV  129 (398)
Q Consensus       121 g~g~~~~~~  129 (398)
                      ++.+.+.+-
T Consensus       134 aTSLLfS~F  142 (354)
T PF05631_consen  134 ATSLLFSAF  142 (354)
T ss_pred             HHHHHHHHH
Confidence            998876543

>TIGR00898 2A0119 cation transport protein

Probab=98.46  E-value=2.4e-06  Score=87.26  Aligned_cols=126  Identities=17%  Similarity=0.019  Sum_probs=83.0

Q ss_pred             hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCc
Q 015916           64 FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRG  142 (398)
Q Consensus        64 ~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG  142 (398)
                      ..++.+++.||+|||+++.++.++.+++.+++.+..     +...+...+..++.+.+.+..+.......++.+|. .|+
T Consensus       371 ~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  445 (505)
T TIGR00898       371 AKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN  445 (505)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence            357889999999999999999988888877765531     11123333344455555555556666778899995 599


Q ss_pred             chHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhccccc
Q 015916          143 PVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRET  196 (398)
Q Consensus       143 ~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~  196 (398)
                      .++|+..+...+|+.+.|.+.. +.+.+ ....+.+..+..++..+..+++||.
T Consensus       446 ~~~g~~~~~~~ig~~i~p~i~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       446 LGVGVCSTMARVGSIISPFLVY-LGEKW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             hhHhHHHHHHHHHHHHHhHHHH-HHHHH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            9999999999999999988877 33222 2222222233333344444556543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.45  E-value=2.8e-06  Score=85.33  Aligned_cols=144  Identities=10%  Similarity=-0.079  Sum_probs=78.8

Q ss_pred             ccccccHHHH-HHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        31 ~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      |.+..+.|.+ ++..|++..+.++......++.. ..+..|++.||+|+++....+.....+.............  .+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  345 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA--GNP  345 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC--Cch
Confidence            4444566665 55679999888886555555554 4789999999997554333343332222111111011111  122


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhH-HHHHHHHHhHcCCChhHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLST-AIFTDLCSALFADDPAKFLF  176 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~-~i~~~l~~~~~~~~~~~~~~  176 (398)
                      +...+..+..|.+.............+.+|+ +||++.|+......+|+ ++.+.+.+.+.+...+...+
T Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~  415 (438)
T TIGR00712       346 LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  415 (438)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHH
Confidence            3332333333333211111112345688885 69999999987766665 56777777776653343333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00896 CynX cyanate transporter

Probab=98.44  E-value=3.3e-06  Score=82.05  Aligned_cols=130  Identities=15%  Similarity=0.110  Sum_probs=90.8

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      +....+.|.+.++.|++..+.+.+.+...++... .++.|++.||+ ++|+++.++.++..++.+.+.+...     .+.
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  288 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-----HGL  288 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-----hHH
Confidence            4444567777667899999998876666677655 79999999999 5666777887788887776654311     122


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      +   ...++.|++.+..++.......+.++  +++|.+.|+......+++++.|.+.+.+.+
T Consensus       289 ~---~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       289 W---AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             H---HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   13456677877766554555554443  357999999888778888888888887764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.42  E-value=2.1e-05  Score=77.56  Aligned_cols=118  Identities=11%  Similarity=-0.092  Sum_probs=73.5

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      +++++|++..+.+.......++.. ..++.|++.||+|+|+.+.++..+..++.+.+.+..       +.+..+....+.
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~  302 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-------SHAVSLFGITLI  302 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            467889999888876555555554 478999999999999999999988888877766531       222222222233


Q ss_pred             hhhhhhhhhHHHHHHHHhhc--cCCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          119 GNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      +.|.+..+..  ....+..|  ++.|.+.++...+..+|+.+.+.+...+
T Consensus       303 ~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        303 CAGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333332222  22333445  3347777666656566666666665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.39  E-value=4.8e-06  Score=83.20  Aligned_cols=146  Identities=14%  Similarity=0.106  Sum_probs=98.3

Q ss_pred             ChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhh
Q 015916           47 TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWM  125 (398)
Q Consensus        47 s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~  125 (398)
                      +..+.+++.....++... .++.|++.||+|+|+++.++.++..++++...+.  .    .+.+.+++..++.|++.+..
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~g~~~~~~  328 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--G----SNLPLILVLIILAGFGQNFV  328 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--c----hhHHHHHHHHHHHHHHHHHH
Confidence            344555554444555554 7899999999999999999998888887766542  1    23455555667777877776


Q ss_pred             hhHHHHHHHHhhc--------cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-----C-------hhHHHHHHHHHHHHH
Q 015916          126 NTAVLVTCIRNFR--------RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-----D-------PAKFLFMLAIVPFVV  185 (398)
Q Consensus       126 ~~~~~~~~~~~Fp--------~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-----~-------~~~~~~~~~~~~~~i  185 (398)
                      ........++..|        +++|.+.|+.+....+|..+.+.+.+.+++.     +       ..........+|++.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~  408 (437)
T TIGR00792       329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALF  408 (437)
T ss_pred             HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence            6666666666543        3479999999998888888888887776531     1       023444555666666


Q ss_pred             HHhhhhccc-ccCC
Q 015916          186 CLGAIFFLR-ETTP  198 (398)
Q Consensus       186 ~~~~~~~l~-~~p~  198 (398)
                      .+++.+++. ..|-
T Consensus       409 ~~~~~~~~~~~y~l  422 (437)
T TIGR00792       409 LLLAAIIIGRFYKL  422 (437)
T ss_pred             HHHHHHHHHHHeeC
Confidence            666666553 4443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.39  E-value=1.3e-05  Score=79.48  Aligned_cols=121  Identities=15%  Similarity=-0.028  Sum_probs=88.2

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      +++.+|.+..+.+++.....++... ++..+++.||+++|+++..+. ..++..+.+.+.       ++++...+..++.
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------~~~~~~~~~~~~~  303 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------HSLLPAYPLLILI  303 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------hHHHHHHHHHHHH
Confidence            5677999999999977777777765 789999999999999888775 333333333321       3455555566677


Q ss_pred             hhhhhhhhhHHHHHHHHhhccC--CcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          119 GNSTTWMNTAVLVTCIRNFRRN--RGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~--RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      |++.+....+..+...+.-|++  ||++.++.+....++..+...+...+..
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~  355 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK  355 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            8888876666666666665553  6999999999998988888877775543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.31  E-value=2.6e-05  Score=76.65  Aligned_cols=151  Identities=9%  Similarity=0.061  Sum_probs=83.2

Q ss_pred             ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhcccC---chHHHHH-HHHHHHHHHHHHHHHHhcccC
Q 015916           29 NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP---APIILLI-GSLEGLVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        29 ~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G---~r~~~~~-g~~~~~ig~~~~~~~~~~~~~  104 (398)
                      ..|.+..+.|++-++.|++.. .+.......+...  +..+++.||..   +|+.... ..++.+++.....+.      
T Consensus       207 ~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~--~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------  277 (368)
T TIGR00903       207 LFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL--IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------  277 (368)
T ss_pred             HHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH--HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------
Confidence            345666788887677788764 3443222222222  22356666654   3444332 333333333333221      


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHH
Q 015916          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPF  183 (398)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~  183 (398)
                       .+.+...+...+.++.....+.......++.+|+ .||++.|+......+|+.+.+.+...++. +....+..++ .+.
T Consensus       278 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~-~~~  354 (368)
T TIGR00903       278 -LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLA-ILI  354 (368)
T ss_pred             -cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH-HHH
Confidence             1222223333444444444444455678899996 69999999999999999888888877764 3233333333 344


Q ss_pred             HHHHhhhh
Q 015916          184 VVCLGAIF  191 (398)
Q Consensus       184 ~i~~~~~~  191 (398)
                      +++.+..+
T Consensus       355 ~i~~~~~~  362 (368)
T TIGR00903       355 TIAFAIAL  362 (368)
T ss_pred             HHHHHHHH
Confidence            44444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.31  E-value=5.7e-06  Score=82.47  Aligned_cols=134  Identities=10%  Similarity=0.042  Sum_probs=81.1

Q ss_pred             ccccccccHHHHHHHc--CCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHH-HHHHHHHHHHHHHHHHHHHhcccC
Q 015916           29 NNYTFSNYSDALKTLM--NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPII-LLIGSLEGLVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        29 ~~~~~s~~~~~l~~~~--g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~-~~~g~~~~~ig~~~~~~~~~~~~~  104 (398)
                      ..+.+..+.|++-+++  +.+..+.+.+.....++... .++.|++.||+++|+. +....++..+++.+. .. .   .
T Consensus       257 ~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~-~~-~---~  331 (412)
T TIGR02332       257 TLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA-SA-T---D  331 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH-Hh-c---C
Confidence            3455566788876654  56777777766666666655 6899999999998775 334443444443222 11 1   1


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                       .+... .....+.+.|.............+.+|+ +||++.|+......+|+++.+.+.+.+.+.
T Consensus       332 -~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~  395 (412)
T TIGR02332       332 -HNLIQ-LLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA  395 (412)
T ss_pred             -CHHHH-HHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence             12211 1111222222221112222333566774 699999999999999999999998887764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.30  E-value=1e-05  Score=80.26  Aligned_cols=128  Identities=13%  Similarity=-0.042  Sum_probs=87.2

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhh-hcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLA-SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l-~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~  112 (398)
                      .+.|.+.++.+.+..+.+++.....++. ....+.+++ .||++.|+.+..+.++.+++.+++.+.       ++++.+.
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~  301 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------SNLQQLF  301 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------hhHHHHH
Confidence            3456654454446677777544444433 334444554 456777877888888888887766543       3455555


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      +...+.+.|.+...+.....+.+..|+ +||++.|+.....++|+.+.+.+.+.+.+.
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            555666777776655666777888884 699999999999999999999988888764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.28  E-value=4.3e-06  Score=80.36  Aligned_cols=125  Identities=20%  Similarity=0.107  Sum_probs=92.8

Q ss_pred             cccccHHHH-HHHcCCC-hhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           32 TFSNYSDAL-KTLMNLT-QLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        32 ~~s~~~~~l-~~~~g~s-~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      .+..+.|.+ ++++|++ ..+.+.+.....+... ..++.|++.||+|+|+...+......++.+.+......    .+.
T Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  299 (352)
T PF07690_consen  224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS----SSP  299 (352)
T ss_dssp             HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH----CHH
T ss_pred             HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----hhH
Confidence            355666775 8889999 7888875555555554 47899999999999888888777777766655432111    233


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFT  160 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~  160 (398)
                      .......++.|++.+..+......+.+.+|+ +||++.|+.....++|+.+.|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4444466677888887778888888999985 699999999999999988875

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.28  E-value=1.4e-07  Score=96.82  Aligned_cols=297  Identities=16%  Similarity=0.079  Sum_probs=2.8

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHH--Hhcc---------
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV--VSRK---------  102 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~--~~~~---------  102 (398)
                      ....+++++|+++.+|.+++.+...++..+ .++..++.+|..|-+.+-+|.+++++|.+++++-  ..+.         
T Consensus        24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~  103 (539)
T PF03137_consen   24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS  103 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence            445679999999999999999999999865 7888899999888888999999999999887641  0000         


Q ss_pred             ------------------------------cCCch--HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHH
Q 015916          103 ------------------------------IQPLS--YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK  149 (398)
Q Consensus       103 ------------------------------~~~~~--~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~  149 (398)
                                                    ..+.+  ++.++++.++.|+|..-.|+...+++=++-++ +-+.-+|+..
T Consensus       104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~  183 (539)
T PF03137_consen  104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILY  183 (539)
T ss_dssp             ------------------------------------------------SSS-----------------------------
T ss_pred             ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhh
Confidence                                          00001  23334568889999988888888888888875 4688888888


Q ss_pred             hhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCC---CCchhhhhhhhHHHHHHHHHHHHHHH
Q 015916          150 GYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPAS---TVDEEKEEAKYFSIINTVAIVVALYL  226 (398)
Q Consensus       150 ~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (398)
                      +...+|.++.-.+.+.+..-                      ++ +.++..   ..-...+..|-.+. +++      |+
T Consensus       184 ~~~~lGPa~Gf~lg~~~L~~----------------------yv-D~~~~~~~~~~i~p~dp~WvGAW-WLG------fl  233 (539)
T PF03137_consen  184 AMSILGPALGFLLGSFCLRI----------------------YV-DFPKVPPDGVGITPSDPRWVGAW-WLG------FL  233 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhccHHHHHHHHHHHHhc----------------------ee-CCccccccCCCCCCCCccHHHHH-HHH------HH
Confidence            88777766655544433320                      00 111100   00000122222111 111      11


Q ss_pred             HHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhh
Q 015916          227 QVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVA  306 (398)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  306 (398)
                      ..                ..+.++...|+..+.++ +.+.  ++...+    + +..+.   +++..+.+...    +++
T Consensus       234 i~----------------g~~~~l~aipl~~FPk~-lp~~--~~~~~~----~-~~~~~---~~~~~~~~~~~----~~~  282 (539)
T PF03137_consen  234 IC----------------GILLFLSAIPLFFFPKK-LPGT--SERQEE----K-ESSER---KEEDSDKDSFK----DPK  282 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HH----------------HHHHHHHHHHHHcCCcc-CCCc--ccccch----h-hhhhc---chhhhhhhccc----ccc
Confidence            10                11223344555443322 1100  000000    0 00000   00000000000    000


Q ss_pred             hhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh-CCC--chhHHHHHHHH-HHHHhh
Q 015916          307 VVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSI-WGFFGR  382 (398)
Q Consensus       307 ~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~-g~~--~~a~~vsl~si-~~~~GR  382 (398)
                      +  .+. ......+--.+.++++|||-|-...++..+-.....++...++.+++.. +.+  +++.+.++..+ +.++|-
T Consensus       283 ~--~~~-~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~  359 (539)
T PF03137_consen  283 S--KKS-FGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGI  359 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c--ccc-hhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheeh
Confidence            0  000 0000011124678999999999998888888888888889999888865 554  46667766666 667899


Q ss_pred             hhhhhhhHHHHhH
Q 015916          383 IISGSVSEYFIKM  395 (398)
Q Consensus       383 l~~G~lsD~~~~~  395 (398)
                      +++|++..|+.-+
T Consensus       360 llGG~ivkk~kl~  372 (539)
T PF03137_consen  360 LLGGYIVKKFKLS  372 (539)
T ss_dssp             -------------
T ss_pred             heEEEEEEEecCc
Confidence            9999999887543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.27  E-value=4.9e-06  Score=82.00  Aligned_cols=130  Identities=11%  Similarity=0.124  Sum_probs=103.0

Q ss_pred             hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-Cc
Q 015916           64 FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RG  142 (398)
Q Consensus        64 ~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG  142 (398)
                      ...+..++.+|+|+|+.++++.+++++=+..++++       ++.+.+.+...+-|+-.+....+...++++.||+| .+
T Consensus       275 ~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA  347 (412)
T PF01306_consen  275 MMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA  347 (412)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH
Confidence            35688999999999999999999999988887765       56788888899999999998899999999999976 56


Q ss_pred             chHHHH-HhhhhhhHHHHHHHHHhHcCCCh-hHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 015916          143 PVSGIL-KGYVGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVVCLGAIFFLRETTPAS  200 (398)
Q Consensus       143 ~a~gi~-~~~~glg~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~l~~~p~~~  200 (398)
                      ++..+. ....++|..+++++.+.+.+.-+ ...++.++.+.....+++.+.++..++..
T Consensus       348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence            777774 56678999999999999988744 44566777777888888888887766543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.27  E-value=1.5e-05  Score=89.71  Aligned_cols=133  Identities=14%  Similarity=-0.049  Sum_probs=97.4

Q ss_pred             cHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhc------------
Q 015916           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR------------  101 (398)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~------------  101 (398)
                      +.|. +++.+|.+..+.+++.....+++++ +++.|++.||+++++.+..+.++.+++.+.+.+....            
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            4455 4667899999999977777778765 7899999999888887777776666555544331000            


Q ss_pred             -ccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          102 -KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       102 -~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                       .....+.|.+++..++.|++.+....+..+.+.+.+|+ .||+++|+.+....+|..+.+.+...+..
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00012456666677778888887777778888999985 69999999999988888888888777653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.26  E-value=3.7e-06  Score=81.70  Aligned_cols=121  Identities=21%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             cccccHHH-HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        32 ~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      .+..+.|. +++.+|++..+.+.+.....+... ..++.|++.||+|+|+.+..+......+..++.+.....   .+.+
T Consensus       243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  319 (366)
T TIGR00886       243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP---LSLA  319 (366)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc---chHH
Confidence            33444444 467789999998876555555554 478999999999999988888777776666554421110   0333


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLS  155 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg  155 (398)
                      ......++.+.+.|..+.......++.+|++||.+.|+..+...+|
T Consensus       320 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       320 VFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            3322222333333333334455667788889999999988876665

>PRK09848 glucuronide transporter; Provisional

Probab=98.23  E-value=1.4e-05  Score=80.39  Aligned_cols=153  Identities=18%  Similarity=0.074  Sum_probs=103.1

Q ss_pred             HHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHh
Q 015916           41 KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (398)
Q Consensus        41 ~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (398)
                      ++.+|.+.....+......++.. ..++.+++.||+|+|+++.+|.++..++++.+.+.  .   ..+++.+++..++.|
T Consensus       256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~g  330 (448)
T PRK09848        256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--S---VWSLPVALVALAIAS  330 (448)
T ss_pred             eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--C---chhHHHHHHHHHHHH
Confidence            45577765544444444344444 47899999999999999999999888888776542  1   134566556667788


Q ss_pred             hhhhhhhhHHHHHHHHhhcc--------CCcchHHHHHhhhhhhHHHHHHHHHhHcC-----CC---h----hHHHHHHH
Q 015916          120 NSTTWMNTAVLVTCIRNFRR--------NRGPVSGILKGYVGLSTAIFTDLCSALFA-----DD---P----AKFLFMLA  179 (398)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp~--------~RG~a~gi~~~~~glg~~i~~~l~~~~~~-----~~---~----~~~~~~~~  179 (398)
                      +|.+..........++.-|.        ++|...|+.+....+|.++.+.+...+++     .+   .    ........
T Consensus       331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~~~~  410 (448)
T PRK09848        331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIA  410 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHH
Confidence            88887776666666666542        25999999988888888888777666542     10   1    23444555


Q ss_pred             HHHHHHHHhhhhcccccCC
Q 015916          180 IVPFVVCLGAIFFLRETTP  198 (398)
Q Consensus       180 ~~~~~i~~~~~~~l~~~p~  198 (398)
                      .+|++..+++.+++...|-
T Consensus       411 ~~p~~~~~~~~~~~~~y~l  429 (448)
T PRK09848        411 LVPCGFMLLAFVIIWFYPL  429 (448)
T ss_pred             HHHHHHHHHHHHHHHHeeC
Confidence            6777777777766655554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.22  E-value=1.2e-05  Score=78.00  Aligned_cols=132  Identities=14%  Similarity=0.056  Sum_probs=80.1

Q ss_pred             ccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH---HHHHHHHHHHHhcccCCch
Q 015916           33 FSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG---LVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        33 ~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~---~ig~~~~~~~~~~~~~~~~  107 (398)
                      +..+.|. +++++|++..+.+.......++... .++.|++.||+++|+.........   .++......   .  +..+
T Consensus       235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~  309 (379)
T TIGR00881       235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL---N--PAAN  309 (379)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---C--cchh
Confidence            3344555 4677899999998866666666654 789999999864333222222211   112221111   0  0123


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      .+...+..++.|...............+.+|+ +||++.|+......+|+.+.+.+.+.+.+.
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  372 (379)
T TIGR00881       310 PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG  372 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence            33333444455543333333344567788885 699999999999999999999888877653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.14  E-value=5.9e-05  Score=69.78  Aligned_cols=148  Identities=13%  Similarity=0.120  Sum_probs=101.4

Q ss_pred             CcHHHHHHHHHHHHHhcccccccccHHH-HHHHcCCChhhHHHH-HHHHHhhhhhhhhhhhhhcccCchHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISGNNYTFSNYSDA-LKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGL   89 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~~~~s~~~~~-l~~~~g~s~~~~~~i-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (398)
                      .-|+..+.|++-....-..++.   .|- ++++||+|..+.+.+ ++...+.....|+.|.++|++|++.....++.+..
T Consensus       265 pfw~~~iicv~yyva~fPFi~l---g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t  341 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITL---GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT  341 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhh---hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence            3477666666544332223322   222 689999999998884 66666677779999999999999988777666554


Q ss_pred             -HHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           90 -VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        90 -ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                       ++...+.+++.         .=++...+.|++-.+.-.+-...++...|+ +-|++-|...+...+|-++.+.+.+.+.
T Consensus       342 l~~H~~l~Ft~l---------sPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  342 LLGHSGLFFTFL---------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHhhhHHhhhc---------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence             45665555422         123344455665554433456667778897 4799999999999999998888887777


Q ss_pred             CCCh
Q 015916          168 ADDP  171 (398)
Q Consensus       168 ~~~~  171 (398)
                      +++.
T Consensus       413 d~~g  416 (459)
T KOG4686|consen  413 DGDG  416 (459)
T ss_pred             cCCC
Confidence            6543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.10  E-value=8.9e-05  Score=74.31  Aligned_cols=188  Identities=13%  Similarity=0.092  Sum_probs=119.5

Q ss_pred             CCCCcHHHHHHHHHHHHHhccc-cc-ccccHHHHHH-HcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCc-hHHHHH
Q 015916            9 SSAGKWLGFVTAVWVQAISGNN-YT-FSNYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPA-PIILLI   83 (398)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~~-~~-~s~~~~~l~~-~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~-r~~~~~   83 (398)
                      ..+.+|+.+..+.+.++..+.. +. +...-|++++ |.+-+.+..+++..+..++.+. .+..|+...|.|. |+.++.
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~  107 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV  107 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence            3456788777777666544432 11 1222244443 4667777888876777788765 8999999999986 888899


Q ss_pred             HHHHHHHHHHHH-HHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHH-HhhccCCcchHHHHHhhhhhhHHHHHH
Q 015916           84 GSLEGLVGYGAQ-WLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI-RNFRRNRGPVSGILKGYVGLSTAIFTD  161 (398)
Q Consensus        84 g~~~~~ig~~~~-~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~-~~Fp~~RG~a~gi~~~~~glg~~i~~~  161 (398)
                      |.++..+|.++- ++.  .. ++...+.+.+.|++.|+|.+.. ...-.+++ ...++.|-+|.+....++-+|..++|.
T Consensus       108 s~ii~~~g~llY~~l~--~~-~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALA--YV-PNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHH--hc-ccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            999999998876 332  21 2225667778999999998754 34455544 456788888888888877777666655


Q ss_pred             HHHhHcC---C-----C-----hhH-HHHHHHHHHHHHHHhhhhcccccCCCC
Q 015916          162 LCSALFA---D-----D-----PAK-FLFMLAIVPFVVCLGAIFFLRETTPAS  200 (398)
Q Consensus       162 l~~~~~~---~-----~-----~~~-~~~~~~~~~~~i~~~~~~~l~~~p~~~  200 (398)
                      +...+-+   .     .     ... -.++.++...+..+...++++|.++..
T Consensus       184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            4333321   1     0     111 223333344444555566778887664

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.09  E-value=3.7e-06  Score=80.21  Aligned_cols=127  Identities=9%  Similarity=-0.009  Sum_probs=88.5

Q ss_pred             hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-Cc
Q 015916           64 FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RG  142 (398)
Q Consensus        64 ~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG  142 (398)
                      ..++.++++||+|||++|....+++++..+++..+....   .-..+++.+|.+.-.+    +.+...+..+.||.. |+
T Consensus       397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---~~tvllf~arafisg~----fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---AYTVLLFTARAFISGA----FQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---hhHHHHHHHHHHHhch----heEEEEecCcccchhhhh
Confidence            357899999999999999999999999888877653321   1123345667654333    334456788999965 99


Q ss_pred             chHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 015916          143 PVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       143 ~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      +++|...+..-+|+.+.|.+.  +..+......+++-....+++.++.+++|..++.
T Consensus       470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence            999999999999988877776  3333333334444445566677777777766654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.08  E-value=5e-05  Score=75.98  Aligned_cols=151  Identities=15%  Similarity=0.187  Sum_probs=103.3

Q ss_pred             HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHh
Q 015916           41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (398)
Q Consensus        41 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (398)
                      +..+|.+ ...+.+.....+.... .++.+++.||+|+|+++..+.++.+++.+...+...     ++.+.+++..++.|
T Consensus       253 ~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~g  326 (428)
T PF13347_consen  253 TYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAG  326 (428)
T ss_pred             HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhH
Confidence            4445655 4455555555566554 789999999999999999999999999998877521     25677778888899


Q ss_pred             hhhhhhhhHHHHHHHHhhc--------cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-----C--------hhHHHHHH
Q 015916          120 NSTTWMNTAVLVTCIRNFR--------RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-----D--------PAKFLFML  178 (398)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp--------~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-----~--------~~~~~~~~  178 (398)
                      ++.+..+.......++..+        ++.|...|+.....-++..+.+.+...+++.     +        ........
T Consensus       327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~~q~~~~~~~i~~~~  406 (428)
T PF13347_consen  327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAAVQSASALSGIRILF  406 (428)
T ss_pred             hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHH
Confidence            9998877777777777664        1247778877777777777766665554321     1        12344555


Q ss_pred             HHHHHHHHHhhhhcccccC
Q 015916          179 AIVPFVVCLGAIFFLRETT  197 (398)
Q Consensus       179 ~~~~~~i~~~~~~~l~~~p  197 (398)
                      +.+|++..+++..+++..|
T Consensus       407 ~~~p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  407 SIVPAIFLLLAIIFMRFYP  425 (428)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            5566666666665555444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.06  E-value=0.00011  Score=75.46  Aligned_cols=169  Identities=15%  Similarity=0.095  Sum_probs=100.5

Q ss_pred             HhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015916           26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        26 ~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~  104 (398)
                      ++|.. ....|.+++-+..|.+... .+.+....+... ...++..+.||+|||+.++.|...+.++.++++........
T Consensus       308 ~tG~~-~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~  385 (513)
T KOG0254|consen  308 LTGIN-YVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALY  385 (513)
T ss_pred             HhCCc-eEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            44543 3345777777777777543 222222222333 35666899999999999999999999999888764332110


Q ss_pred             ------CchHHH-HHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhHcCCC--hhHH
Q 015916          105 ------PLSYWQ-MCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKF  174 (398)
Q Consensus       105 ------~~~~~~-l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~~--~~~~  174 (398)
                            ...... ..+...+..+..+.. ..+.....+.||.+ |+++.++..+...+.+.+....+....+..  ...+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~v~~f~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f  464 (513)
T KOG0254|consen  386 YPNSSKGAGWLAIVFLCLFIFSFAIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTF  464 (513)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHhcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence                  001111 112333444444543 34556789999965 999999999998888887766665555442  3444


Q ss_pred             HHHHHHHHHHHHHhhhhcccccC
Q 015916          175 LFMLAIVPFVVCLGAIFFLRETT  197 (398)
Q Consensus       175 ~~~~~~~~~~i~~~~~~~l~~~p  197 (398)
                      .++.++..........+++||..
T Consensus       465 ~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  465 GYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHHHHHHHHHHHHHheEEcccCC
Confidence            44444433332223344444443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.04  E-value=0.00025  Score=70.67  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=90.3

Q ss_pred             cccccccHHHH-HHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCch
Q 015916           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        30 ~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      .+.+..+.|.+ ++.+|++..+.++.......+... +.+.+++.+|.++++....+..+..+|..++...... .+ ++
T Consensus       234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~-~~-~~  311 (413)
T PRK15403        234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL-WP-HV  311 (413)
T ss_pred             HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH-cc-cc
Confidence            34555556654 667899999999865555555544 5777776655444444433344444444443322100 01 23


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc--CCcchHHHHHhhhhhhHHHHHHHHHhHcCCC-hhHHHHHHHHHHHH
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFADD-PAKFLFMLAIVPFV  184 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~  184 (398)
                      .+..++..++.+.|.+........  ..++++  .+|++.++.......+..+.+...+.+.+.. .+.+.....+...+
T Consensus       312 ~~~~~~~~~l~~~G~~~~~p~~~~--~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        312 WLWSVLGTSLYAFGIGLIFPTLFR--FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH--HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            333344566667777765433332  335543  4899999988877777777777766654432 33343333333333


Q ss_pred             HHHhhhhcccccCCC
Q 015916          185 VCLGAIFFLRETTPA  199 (398)
Q Consensus       185 i~~~~~~~l~~~p~~  199 (398)
                      .........|.+|.+
T Consensus       390 ~~~~~~~~~~~~~~~  404 (413)
T PRK15403        390 VVFTLAGLLNRVRQH  404 (413)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            333334444444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.95  E-value=5.5e-05  Score=77.29  Aligned_cols=156  Identities=13%  Similarity=0.143  Sum_probs=109.5

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHH--HHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIIL--LIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~--~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      ...++.|.+.+..+++..+.+...+...+.... -++.|++.|+...++..  .++.+..+++.+.+.++       +++
T Consensus       316 ~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-------~~~  388 (509)
T KOG2504|consen  316 VPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-------TTY  388 (509)
T ss_pred             HHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-------ccH
Confidence            445677888889999999999966655566655 59999999999954444  44444444444333332       568


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVC  186 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~  186 (398)
                      +.+..+.++.|+..|....-...++.+..+ ++-..+.|+.....+++..+.+++.+.+.+. +.+...+..+.+..+++
T Consensus       389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s  468 (509)
T KOG2504|consen  389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLS  468 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHH
Confidence            888888899998888765544457778887 5679999999999999999999999977764 22444444444444444


Q ss_pred             Hhhhhccc
Q 015916          187 LGAIFFLR  194 (398)
Q Consensus       187 ~~~~~~l~  194 (398)
                      ..+.++.+
T Consensus       469 ~~~~~~~~  476 (509)
T KOG2504|consen  469 AVLLLILR  476 (509)
T ss_pred             HHHHHHhH
Confidence            44444444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.94  E-value=7.4e-05  Score=76.26  Aligned_cols=107  Identities=7%  Similarity=-0.042  Sum_probs=80.4

Q ss_pred             hhh-hhhhhhhhhhcccCchHH-------HHHHHHHHHHHHHHHHH---HHhcccCCchHHHHHHHHHHHhhhhhhhhhH
Q 015916           60 IGK-AFGLLAGLASDRIPAPII-------LLIGSLEGLVGYGAQWL---VVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA  128 (398)
Q Consensus        60 ~~~-~~~~~~G~l~Dr~G~r~~-------~~~g~~~~~ig~~~~~~---~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~  128 (398)
                      +.. +++|+.|++.||+|+|+.       +.+|.++.+++++.++.   ...+.....++|.+....++.|+|.++..++
T Consensus       320 ~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~  399 (489)
T PRK10207        320 FWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISAL  399 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHH
Confidence            444 347889999999999973       77888888888765432   1111111134666666788899999998888


Q ss_pred             HHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          129 VLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       129 ~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      ....+.+..|++ +|.++|+.....++|+.+...+.+..
T Consensus       400 g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        400 GLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999965 99999999999999999988776544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.94  E-value=0.00077  Score=65.83  Aligned_cols=130  Identities=12%  Similarity=0.047  Sum_probs=88.1

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhcccC-----chHHHHH-HHHHHHHHHHHHHHHHh--cc---cC--Cc
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLI-GSLEGLVGYGAQWLVVS--RK---IQ--PL  106 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~-g~~~~~ig~~~~~~~~~--~~---~~--~~  106 (398)
                      +..|++++..-.+.....-.+....-+..|..+|+++     ||...++ |.++.+.|..++.+...  ..   ..  ..
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            4567888877666644444455556789999999999     7776554 45555555555544321  11   00  11


Q ss_pred             hHHHHH--HHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          107 SYWQMC--VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       107 ~~~~l~--~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      ..+...  +...+.|+|.+..-++....+.+.-| ++|+++.++.....=+|-.+.+.+.+.++++
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~  151 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP  151 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            233322  34677888888877888888888887 5799999999998878877877887777653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.94  E-value=0.00016  Score=70.62  Aligned_cols=249  Identities=16%  Similarity=0.121  Sum_probs=133.2

Q ss_pred             HHHHHhhhhhhhhhhhhhcccCchHHHHHHHHHHH-HHHHHHHHHHhcccCCchHHH-HHHHHHHHhhhhhhhhhHHHHH
Q 015916           55 SVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGL-VGYGAQWLVVSRKIQPLSYWQ-MCVFLCMGGNSTTWMNTAVLVT  132 (398)
Q Consensus        55 ~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~-ig~~~~~~~~~~~~~~~~~~~-l~~~~~l~G~g~g~~~~~~~~~  132 (398)
                      +....+-++.+|+-|.++|+.|+||-.+--..... +..+.+++..     +.+++. ..++..+..++.....+.....
T Consensus        65 aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~-----~~s~~~~~l~~~il~~i~~~~s~Vfyds~  139 (438)
T COG2270          65 AIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP-----PGSYLLLLLLFLILASIGFEFSNVFYDSM  139 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHHhcchhheehhhH
Confidence            33333444568999999999999987665444443 3444444431     113443 3445666677666666667777


Q ss_pred             HHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhh
Q 015916          133 CIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKY  211 (398)
Q Consensus       133 ~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~  211 (398)
                      ..+..++ +-|+.+++....-.+|+.+.-.+....+-....          ......   ++..+|..       .++.|
T Consensus       140 L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~----------~~~~~~---l~~l~~~~-------~~~~r  199 (438)
T COG2270         140 LPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQ----------TGITII---LLGLPPAD-------GEDVR  199 (438)
T ss_pred             hhhhcCccccCcccccccccccccchHHHHHHHHHHhcccc----------cceeEE---eeccCccc-------cccch
Confidence            8888876 458887777776677776654443222110000          000000   11222221       23334


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCC
Q 015916          212 FSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGET  291 (398)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  291 (398)
                      ......     +.+                      .++...|+...++         +++.        ...|  +++ 
T Consensus       200 i~~~l~-----A~W----------------------~li~~iPm~~~v~---------~~~~--------~~~~--~~~-  232 (438)
T COG2270         200 ITGLLA-----ALW----------------------WLLFALPMILNVH---------DAEK--------ISSP--PPT-  232 (438)
T ss_pred             hHHHHH-----HHH----------------------HHHHHhHHHhccc---------cccc--------cccc--chH-
Confidence            332211     111                      1234466644321         1100        0001  000 


Q ss_pred             CCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHH-HhCCCchh--
Q 015916          292 TGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--  368 (398)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~-~~g~~~~a--  368 (398)
                            ..     .+.  .   +     +-..|.||..+.++.-++.++-++..-...+++...+.+.. ++|.++..  
T Consensus       233 ------~l-----~~g--~---k-----~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~ll  291 (438)
T COG2270         233 ------AL-----RNG--F---K-----ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELL  291 (438)
T ss_pred             ------HH-----HHH--H---H-----HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHH
Confidence                  00     000  1   0     01346788877777666666655554444455555556666 67887543  


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          369 IFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       369 ~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      ......++...+|-+++|+|.||++.|.
T Consensus       292 l~g~~~~vvA~lg~ii~g~Ld~rfg~k~  319 (438)
T COG2270         292 LIGIALSVVAALGAIIAGFLDERFGSKP  319 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence            4667788899999999999999999874

>TIGR00788 fbt folate/biopterin transporter

Probab=97.91  E-value=6.7e-05  Score=76.17  Aligned_cols=154  Identities=12%  Similarity=-0.043  Sum_probs=107.0

Q ss_pred             HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc--C-CchHHHHHHHHHH
Q 015916           42 TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI--Q-PLSYWQMCVFLCM  117 (398)
Q Consensus        42 ~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~--~-~~~~~~l~~~~~l  117 (398)
                      +.+|++..+.+.+.....++.+. ....+++.+|++.|+++.++.++..++.+..........  . -.+.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            46899999999976666666655 689999999999999999999999887755432111000  0 0112223334677


Q ss_pred             HhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC--------ChhHHHHHHHHHHHHHHHh
Q 015916          118 GGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD--------DPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~--------~~~~~~~~~~~~~~~i~~~  188 (398)
                      .+++.+..+.+....+.+..|+ .+|+..++..+..++|..+.+.+.+.+.+.        +.......++..+.++.+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            7888888888889999999996 589999999999999999888665555432        1122234444455556666


Q ss_pred             hhhcccc
Q 015916          189 AIFFLRE  195 (398)
Q Consensus       189 ~~~~l~~  195 (398)
                      ..+++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            6667776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00013  Score=71.23  Aligned_cols=138  Identities=14%  Similarity=0.088  Sum_probs=86.5

Q ss_pred             cccccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhccc--CchHHHHHHHHHH-HHHHHHHHHHHhcccC
Q 015916           30 NYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIILLIGSLEG-LVGYGAQWLVVSRKIQ  104 (398)
Q Consensus        30 ~~~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~~g~~~~-~ig~~~~~~~~~~~~~  104 (398)
                      .|...-+.|- +.|..|+|..+.++..+..-.+++. .+++|+++||+  |+|..+.+...+. .++....++.     +
T Consensus       268 R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-----~  342 (448)
T COG2271         268 RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-----P  342 (448)
T ss_pred             HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-----C
Confidence            3444455555 5778899999999977777777765 68999999994  7776655444333 3344443332     1


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhh-hHHHHHHHHHhHcCCChh
Q 015916          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGL-STAIFTDLCSALFADDPA  172 (398)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~~~~  172 (398)
                      +.+++...++.++.|+-...-....-....+.-||+ -|+|.|+...+..+ |++......+.+.+..+|
T Consensus       343 ~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW  412 (448)
T COG2271         343 NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGW  412 (448)
T ss_pred             CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCC
Confidence            234555555666666544322222222344555876 89999999988888 555555555555555344

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.00032  Score=70.15  Aligned_cols=125  Identities=13%  Similarity=0.019  Sum_probs=81.1

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcc----cCchHH-HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAPII-LLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr----~G~r~~-~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~  113 (398)
                      +.+.+|++...++.+....=+-- ..-|+.|.+.||    +||||. ++.|.+.+++.+.+++.... .....+....++
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~-~~~~~k~~ya~v  117 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD-FSMTGKLIYALV  117 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC-cccCcchHHHHH
Confidence            57789999999998544444444 457999999997    677665 55666788887777765421 110123333444


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHhh--ccCCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916          114 FLCMGGNSTTWMNTAVLVTCIRNF--RRNRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~F--p~~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      -..+.+++-.....+-.+...+.=  |++|.+..+.-..+..+|..+...+...
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p  171 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPP  171 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666655555556655  4579999998888877776665554433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.86  E-value=0.0011  Score=65.33  Aligned_cols=158  Identities=15%  Similarity=0.055  Sum_probs=108.0

Q ss_pred             cccHHHHHHH-cCCChhhHHH-HHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           34 SNYSDALKTL-MNLTQLELNN-LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        34 s~~~~~l~~~-~g~s~~~~~~-i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      +...|.+.+. .|++..|++. +.-...=..+. .++...+.|..|.|++++++++...+.+.++-+.       ++++.
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------~sv~~   96 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------TSVLA   96 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------CcHHH
Confidence            4455667664 8999999987 44333333333 5788999999999999999999988888887654       46777


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC--CChhHHHHHHHHHHHHHHH
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA--DDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~  187 (398)
                      +-+.-+..|.+.+. ..+-..++-..-|+ +--++.+...+..-+|-.+.+.+...++.  ......+..++.....+++
T Consensus        97 mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~  175 (412)
T PF01770_consen   97 MQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL  175 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            77777787877764 33444444433453 45677777777777776776666666554  2334556666777777777


Q ss_pred             hhhhcccccCCC
Q 015916          188 GAIFFLRETTPA  199 (398)
Q Consensus       188 ~~~~~l~~~p~~  199 (398)
                      +..+++|.+++.
T Consensus       176 ~~~~fLP~~~~S  187 (412)
T PF01770_consen  176 LIALFLPMPKRS  187 (412)
T ss_pred             HHHHHcCCCCcc
Confidence            777777776654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09669 putative symporter YagG; Provisional

Probab=97.85  E-value=0.00033  Score=70.48  Aligned_cols=140  Identities=13%  Similarity=0.086  Sum_probs=87.9

Q ss_pred             HHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHH
Q 015916           54 LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT  132 (398)
Q Consensus        54 i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~  132 (398)
                      +.....+..+. .++.+++.||+|+|+...++.+...++.....+.  .   .++.+.+++..++.|++.+.........
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--P---PSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--C---cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444 5788999999999999998877666544333221  1   1345666666778888888777777777


Q ss_pred             HHHhhc-------cC-CcchHHHHHhhhhhhHHHHHHHHHhHcC------C---Ch----hHHHHHHHHHHHHHHHhhhh
Q 015916          133 CIRNFR-------RN-RGPVSGILKGYVGLSTAIFTDLCSALFA------D---DP----AKFLFMLAIVPFVVCLGAIF  191 (398)
Q Consensus       133 ~~~~Fp-------~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~------~---~~----~~~~~~~~~~~~~i~~~~~~  191 (398)
                      +++..+       +| .|...|+......+|.++.+.+.+.+++      +   +.    .......+.+|++..+++.+
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~  423 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLTTINLLFTVIPGVLFAGMAI  423 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777664       12 3666777766666666666655555432      1   11    23445566678777777777


Q ss_pred             cccccCC
Q 015916          192 FLRETTP  198 (398)
Q Consensus       192 ~l~~~p~  198 (398)
                      ++...|-
T Consensus       424 ~~~~y~l  430 (444)
T PRK09669        424 ILNFYKL  430 (444)
T ss_pred             HHHhccC
Confidence            7665554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.78  E-value=0.00055  Score=69.55  Aligned_cols=119  Identities=8%  Similarity=-0.045  Sum_probs=76.4

Q ss_pred             ChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhh
Q 015916           47 TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWM  125 (398)
Q Consensus        47 s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~  125 (398)
                      +....+.+.....+..+. .++.+++.||+|+|+++.++.++..++.+........  ...+.+.+.+..++.|++.+..
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~g~~~~~~  341 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA--APHNALLIVIAGILLNIGTALF  341 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHHH
Confidence            344444544444444444 6889999999999999998888777666555332100  1134555556667777888777


Q ss_pred             hhHHHHHHHHhhc-------cC-CcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          126 NTAVLVTCIRNFR-------RN-RGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       126 ~~~~~~~~~~~Fp-------~~-RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      ......++++..+       +| .|...|......-+|.++.+.+.+.++
T Consensus       342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677776633       22 366778877777777777766666554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.73  E-value=0.0006  Score=69.82  Aligned_cols=100  Identities=12%  Similarity=-0.030  Sum_probs=77.6

Q ss_pred             hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc--CCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CC
Q 015916           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI--QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR  141 (398)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~--~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R  141 (398)
                      +...+++.||+++++.+.+|.++.++|++.+........  ...+.+++....++.|+|.++..+.....+.+.-|+ .|
T Consensus       337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            334578888888889999999999999998776432100  012355566678899999998888888889999996 59


Q ss_pred             cchHHHHHhhhhhhHHHHHHHHH
Q 015916          142 GPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus       142 G~a~gi~~~~~glg~~i~~~l~~  164 (398)
                      |+++|+......+|+.+...+.+
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888777765

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.65  E-value=0.0014  Score=60.31  Aligned_cols=125  Identities=22%  Similarity=0.139  Sum_probs=87.1

Q ss_pred             ccHHHHHHHcCCCh--hhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 015916           35 NYSDALKTLMNLTQ--LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (398)
Q Consensus        35 ~~~~~l~~~~g~s~--~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l  111 (398)
                      ...+.+..+++.+.  .+.++......++... .++.|++.||+|+|+.+..+.....++.+...+...     .+.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   97 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-----VGLALL   97 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-----chHHHH
Confidence            34455566666555  3666665555666654 589999999999998888888765555444443210     236677


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhcc--CCcchHHHHHhh-hhhhHHHHHHHHH
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGY-VGLSTAIFTDLCS  164 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~-~glg~~i~~~l~~  164 (398)
                      .+.+...|++.+..+........+++|+  +|+...+..... ..+|..+.+.+..
T Consensus        98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477          98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888887777888889999996  789999988884 5556555553333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.62  E-value=0.0016  Score=64.89  Aligned_cols=95  Identities=8%  Similarity=0.028  Sum_probs=68.7

Q ss_pred             hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcch
Q 015916           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPV  144 (398)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a  144 (398)
                      -+++|++.||+++|+++.+..+...+..++....       ++... .....+.|+..+.+++.......+.++++...+
T Consensus       286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-------~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~  357 (410)
T TIGR00885       286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-------GGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYG  357 (410)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------CChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            5889999999999999888888877776666542       12222 223344556666677777778889998876665


Q ss_pred             HHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          145 SGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       145 ~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      .+...++. +|++++|++.+.+.+
T Consensus       358 s~~l~~~~-~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       358 AAGLVMAI-IGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHHHH-hccchHHHHHHHHHH
Confidence            55555544 999999999998876

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.61  E-value=0.001  Score=67.75  Aligned_cols=126  Identities=10%  Similarity=-0.041  Sum_probs=88.1

Q ss_pred             hhhhhcc-cCchHHH--HHHHHHHHHHHHHHHHHHhccc--CCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CC
Q 015916           68 AGLASDR-IPAPIIL--LIGSLEGLVGYGAQWLVVSRKI--QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR  141 (398)
Q Consensus        68 ~G~l~Dr-~G~r~~~--~~g~~~~~ig~~~~~~~~~~~~--~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R  141 (398)
                      ..++.|| .+++...  .+|.++.+++++.+++......  ...++|.+.+..++.++|-.+..+.......+.-|+ .|
T Consensus       336 ~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~  415 (475)
T TIGR00924       336 WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLM  415 (475)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence            3456665 4555544  7889998888887765311100  014678788888899999998888888888999986 59


Q ss_pred             cchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhhhhcc
Q 015916          142 GPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFFL  193 (398)
Q Consensus       142 G~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~l  193 (398)
                      |+.+|+.....++|..+.+.+....... +...++..+++...++.++..+..
T Consensus       416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887765443 334455555555555555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.003  Score=60.69  Aligned_cols=139  Identities=16%  Similarity=0.044  Sum_probs=98.3

Q ss_pred             cccccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhc-ccCchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           28 GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASD-RIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        28 g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~D-r~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      ...|+.--+.|++-.|-|+|..+.++..+...+..+ .++..-.+.+ +-.+|+.......++.+|++.+.+...     
T Consensus       222 ~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~-----  296 (395)
T COG2807         222 LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG-----  296 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-----
Confidence            345666678899999999999999985555555543 4666666666 456777777888888889888876521     


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc--CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKF  174 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~  174 (398)
                      ...+ +  ..++.|+|.|..+..+...+..-.++  +-+.-+|..++...+=+++.|.+.+.+.+. ++|..
T Consensus       297 ~~~~-l--w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~  365 (395)
T COG2807         297 QLPI-L--WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSA  365 (395)
T ss_pred             hHHH-H--HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHH
Confidence            1121 1  24788999998888888887766653  457777887777777778888888887764 33443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.49  E-value=0.0014  Score=65.79  Aligned_cols=158  Identities=21%  Similarity=0.231  Sum_probs=107.9

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhhhhhhhhhhcccC-----chHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      ...+.+++++|++.+|.+.+.....+...+-|+.|.++|.+.     ||+=++++.++..++.+.++.... ..  .+..
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-~~--~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-SE--SSAA   87 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-cc--chhh
Confidence            345668999999999999987777777788999999999974     666677777777666665554311 11  2344


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhh---ccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHH-HHHHHHHHHHH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNF---RRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKF-LFMLAIVPFVV  185 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~F---p~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~i  185 (398)
                      ...++.++..+|....++.+=....|.-   |+.||...+.......+|+.+...+.+.+.+....+. +...+..+.+.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            4445556677777777777666666555   4457888888888888898888888777766533333 33444555655


Q ss_pred             HHhhhhcccc
Q 015916          186 CLGAIFFLRE  195 (398)
Q Consensus       186 ~~~~~~~l~~  195 (398)
                      .+...++.+|
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            5555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00019  Score=70.73  Aligned_cols=181  Identities=8%  Similarity=-0.025  Sum_probs=115.9

Q ss_pred             HHHHHHHHHH-HhcccccccccHHHHHHHcCCChhhHHH-----HHHHHH----hhhhh-hhhhhhhhcccCchHHHHHH
Q 015916           16 GFVTAVWVQA-ISGNNYTFSNYSDALKTLMNLTQLELNN-----LSVVKD----IGKAF-GLLAGLASDRIPAPIILLIG   84 (398)
Q Consensus        16 ~l~~~~~~~~-~~g~~~~~s~~~~~l~~~~g~s~~~~~~-----i~~~~~----~~~~~-~~~~G~l~Dr~G~r~~~~~g   84 (398)
                      .++..+...+ ..-..|..+++...+-+..|+...+-..     ......    ++.+- -++...++|++|||++-+-|
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G  384 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG  384 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence            3444444432 3345688899998888888877654333     111222    22221 24667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCchHHHHH-HHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHH
Q 015916           85 SLEGLVGYGAQWLVVSRKIQPLSYWQMC-VFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDL  162 (398)
Q Consensus        85 ~~~~~ig~~~~~~~~~~~~~~~~~~~l~-~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l  162 (398)
                      .+++.+-++.++....+......+..++ +..++..+|=+.   ......++.||.+ ||+.-|+..+..-.|+.+....
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~  461 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFG  461 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc---eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHH
Confidence            9999998888776544222111122233 234444444332   2334578999965 9999999998888888888888


Q ss_pred             HHhHcCC-----ChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 015916          163 CSALFAD-----DPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       163 ~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      +....++     ...+..+.+.....++.++..+++||..+.
T Consensus       462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK  503 (538)
T ss_pred             hhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence            7777662     234555666666677777777788765544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.44  E-value=0.0028  Score=66.79  Aligned_cols=155  Identities=12%  Similarity=0.008  Sum_probs=98.7

Q ss_pred             ccHHHHHHHcCCChhhHHH-HHHHHHhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCC-chHHHH
Q 015916           35 NYSDALKTLMNLTQLELNN-LSVVKDIGKAFGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQP-LSYWQM  111 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~-i~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~-~~~~~l  111 (398)
                      ++...+.+.+|++.++... +.....+..+.+.++|+++|+ +|+++++.++.++..+|+.++++........ ......
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            3444567789999988877 455544555668899999998 8999999999999999998887531111000 111223


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHhhcc----CCcchHHHHHhhhhhhHHHHHHHHHhHcCC-------ChhHHHHHHHH
Q 015916          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR----NRGPVSGILKGYVGLSTAIFTDLCSALFAD-------DPAKFLFMLAI  180 (398)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~----~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-------~~~~~~~~~~~  180 (398)
                      +++..+..+|.|..-+.......+-|++    +|-....+...+..+|+.+.+.+...+-+.       ..|...+.+..
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            3445556667776555555667788863    245566666677788888887777665422       13544444444


Q ss_pred             HHHHHHHhh
Q 015916          181 VPFVVCLGA  189 (398)
Q Consensus       181 ~~~~i~~~~  189 (398)
                      +..+++++.
T Consensus       169 i~m~ia~lv  177 (654)
T TIGR00926       169 ILMILALIV  177 (654)
T ss_pred             HHHHHHHHH
Confidence            444444433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.37  E-value=2.1e-06  Score=86.21  Aligned_cols=164  Identities=18%  Similarity=0.090  Sum_probs=99.3

Q ss_pred             ccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH--HHHhcccC-CchH
Q 015916           33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQW--LVVSRKIQ-PLSY  108 (398)
Q Consensus        33 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~--~~~~~~~~-~~~~  108 (398)
                      ...|.+.+.+..+.+..  ........+... ..+.+..+.||+|||++++.+....++..+.++  .......+ ..+.
T Consensus       272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI  349 (451)
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566667777777766  111122222222 346667999999999999999998888777664  11111000 0022


Q ss_pred             HHHHH-HHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCCh-hHHHHHHHHHHHHH
Q 015916          109 WQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVV  185 (398)
Q Consensus       109 ~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~i  185 (398)
                      ..+.. .....+.+.+.. ........|.||. .|+++.|+......+++++.+.+...+.+... +..+...+.+..+.
T Consensus       350 ~~i~~~~l~~~~~~~g~~-~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~  428 (451)
T PF00083_consen  350 LSIVFLALFFAFFSLGWG-PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIA  428 (451)
T ss_pred             ccceeeeecccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHH
Confidence            22221 112222333322 3445677999995 59999999999888998888877766665433 55555555556666


Q ss_pred             HHhhhhcccccCCC
Q 015916          186 CLGAIFFLRETTPA  199 (398)
Q Consensus       186 ~~~~~~~l~~~p~~  199 (398)
                      .+.+.+++||....
T Consensus       429 ~i~~~~~lpET~g~  442 (451)
T PF00083_consen  429 IIFVYFFLPETKGK  442 (451)
T ss_pred             HhheeEEEeeCCCC
Confidence            66666777776643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=97.31  E-value=0.0097  Score=60.27  Aligned_cols=108  Identities=17%  Similarity=-0.005  Sum_probs=53.3

Q ss_pred             HHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHH
Q 015916           52 NNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVL  130 (398)
Q Consensus        52 ~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~  130 (398)
                      +.+.....++.+. .++++++.||+|.|++...+..+..+..++..+.  .   ..+.+.+++..++.|++.+.......
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--P---MQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--c---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455444 6889999999999998776655544433333221  1   12232333344455655554433333


Q ss_pred             HHHHHhhc------cCC--cchHHHHHhhhhhhHHHHHHHHH
Q 015916          131 VTCIRNFR------RNR--GPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus       131 ~~~~~~Fp------~~R--G~a~gi~~~~~glg~~i~~~l~~  164 (398)
                      .+.++.-+      .+|  |...+......-+|.++.+.+.+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34433322      244  34334433444444444444433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.26  E-value=0.0038  Score=53.42  Aligned_cols=98  Identities=12%  Similarity=-0.013  Sum_probs=73.5

Q ss_pred             hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 015916           60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR  139 (398)
Q Consensus        60 ~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~  139 (398)
                      ...+..++.+.+.+++|+|+.+++|.+.+.+-......        .+.+.++...++.|+|.+...++.-..+.+.-++
T Consensus        49 ~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   49 SFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            33444677888999999999999999888754443321        3456777789999999999888877788887765


Q ss_pred             -CCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916          140 -NRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus       140 -~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                       +|++-.|+..+....+..+...+...
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             58999999888887766665554433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.0038  Score=62.60  Aligned_cols=119  Identities=18%  Similarity=0.069  Sum_probs=86.4

Q ss_pred             cCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhh
Q 015916           44 MNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNST  122 (398)
Q Consensus        44 ~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~  122 (398)
                      +|.+..+..........+.+. .++..++.+|+|+|++..++.++..++++++++..     .++.+.+++..++.++|.
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-----~~~~~l~~~~~~i~~~g~  341 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-----AGSVVLIVVALIIAGVGT  341 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-----CcchHHHHHHHHHHHHHh
Confidence            455555555555555556565 57899999999999999999999999999998863     145677777888888888


Q ss_pred             hhhhhHHHHHHH------Hhhcc-C-CcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          123 TWMNTAVLVTCI------RNFRR-N-RGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       123 g~~~~~~~~~~~------~~Fp~-~-RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +..+.....+++      ||-.. | -|...|+.....=+|.++...+.+..+
T Consensus       342 ~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         342 GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776676664      45543 3 377777777666677777666655554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.16  E-value=0.0019  Score=49.05  Aligned_cols=69  Identities=16%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHH
Q 015916           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV   98 (398)
Q Consensus        30 ~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~   98 (398)
                      .+.|+...|.++++.++|.++.+++.+...+|.++ .+...++.++..+|+.+..+.+...+..+.+++.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788889999999999999999999999999987 5788999999999999999999999998888765

Note that many members are hypothetical proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.014  Score=56.86  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=96.0

Q ss_pred             HhcccccccccHHHHHHH-cCCChhhHHHHHHHHHhhhhhh-hhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 015916           26 ISGNNYTFSNYSDALKTL-MNLTQLELNNLSVVKDIGKAFG-LLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI  103 (398)
Q Consensus        26 ~~g~~~~~s~~~~~l~~~-~g~s~~~~~~i~~~~~~~~~~~-~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~  103 (398)
                      -.|.--..+.+.+.+..+ .|.+..+.+...+....+...+ .++-++..|+-+.|.+.+.++...+-++...++     
T Consensus       248 YVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-----  322 (422)
T COG0738         248 YVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-----  322 (422)
T ss_pred             HHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            345543444555555444 7888888888767666666665 678888889999999988776665555555443     


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhH
Q 015916          104 QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK  173 (398)
Q Consensus       104 ~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~  173 (398)
                        ++.+.++ .-++.|..++.+++.......+..|++-..+.++..+ ...|+++.|++.+.+.+..+..
T Consensus       323 --~g~v~~~-~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~m-aivGGAiiP~l~G~i~d~~g~~  388 (422)
T COG0738         323 --GGVVALY-ALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVM-AIVGGAIIPPLQGVIADMFGIQ  388 (422)
T ss_pred             --cChHHHH-HHHHHHHHhHHHHHHHHHHHHhccCccccccceeeee-heecchHHHHHHHHHHHhhhhH
Confidence              2333333 2345677788888888888889999666666666544 4689999999999887754433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0051  Score=62.26  Aligned_cols=158  Identities=18%  Similarity=0.139  Sum_probs=95.7

Q ss_pred             cccccccHHHH-HHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCc---------hHHHHHHHHHHHHHHHHHHHH
Q 015916           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPA---------PIILLIGSLEGLVGYGAQWLV   98 (398)
Q Consensus        30 ~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~---------r~~~~~g~~~~~ig~~~~~~~   98 (398)
                      .+.+-.|.|.+ ++-+|++-.+.++++..-.+.+. +.+++|.++||.-.         |..-.++....++.++.+++.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            35556678875 77899999999998776666665 58999999999865         222223333333333333332


Q ss_pred             HhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHh-hccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCC---hhHH
Q 015916           99 VSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRN-FRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD---PAKF  174 (398)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~-Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~---~~~~  174 (398)
                        +..  +....+....+  +.+............... -|++-+.++|+.+....+.+.+.|.+.+.+.+++   .|+.
T Consensus       354 --~~~--~~~~a~~~l~~--~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~  427 (466)
T KOG2532|consen  354 --SDE--HRLLAVILLTI--AIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI  427 (466)
T ss_pred             --CCC--cchHHHHHHHH--HHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence              111  12112221111  112211222233333434 6888999999999999999999999999988543   5777


Q ss_pred             HHHHHHHHHHHHHhhhhcc
Q 015916          175 LFMLAIVPFVVCLGAIFFL  193 (398)
Q Consensus       175 ~~~~~~~~~~i~~~~~~~l  193 (398)
                      .+++..+..+++-+...+.
T Consensus       428 VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  428 VFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHhchheeEe
Confidence            7766665555554444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.003  Score=64.23  Aligned_cols=135  Identities=19%  Similarity=0.093  Sum_probs=85.7

Q ss_pred             cccccccccHHHHHHH-cCCChhhHHHHHHHHHhhhhh-hhhhhhhhcc----cCchHHHHHHHHHHH-HHHHHHHHHHh
Q 015916           28 GNNYTFSNYSDALKTL-MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR----IPAPIILLIGSLEGL-VGYGAQWLVVS  100 (398)
Q Consensus        28 g~~~~~s~~~~~l~~~-~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr----~G~r~~~~~g~~~~~-ig~~~~~~~~~  100 (398)
                      ...|+++.+.|.+-++ .|+|..+.+.+++...++.++ .+++|.+.||    +.+|........++. +|+..+...  
T Consensus       287 lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--  364 (495)
T KOG2533|consen  287 LVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--  364 (495)
T ss_pred             hccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            4568888898887665 679999999998888888876 7899999999    666666666555554 343443321  


Q ss_pred             cccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc--CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          101 RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       101 ~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                           ......+.+.+....+.+.....+..-.......  ||-...+....+.+.++.+.+++......+
T Consensus       365 -----~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap  430 (495)
T KOG2533|consen  365 -----AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP  430 (495)
T ss_pred             -----ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence                 1122222222222233333333444445555542  466666777777888888888887776554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.94  E-value=0.003  Score=63.54  Aligned_cols=116  Identities=11%  Similarity=0.104  Sum_probs=87.9

Q ss_pred             hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-Ccc
Q 015916           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGP  143 (398)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~  143 (398)
                      -++.+++++++|+-+++.+|...+.+=++..++.       .|.|...-.-++.|+..++.+.+...+++..-|++ |..
T Consensus       423 ~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at  495 (618)
T KOG3762|consen  423 YFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRAT  495 (618)
T ss_pred             HHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHH
Confidence            4788999999999999999999998888877765       56787777899999999999999999999999865 999


Q ss_pred             hHHHHHhh-hhhhHHHHHHHHHhHcCCCh-hHHHHHHHHHHHHHHH
Q 015916          144 VSGILKGY-VGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVVCL  187 (398)
Q Consensus       144 a~gi~~~~-~glg~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~  187 (398)
                      +.|++.+. .|+|-.+.+.+.+.+++.-+ ...+...++.+.+.++
T Consensus       496 ~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  496 AQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             HHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            99998865 46666666666666665433 3344444443333333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.91  E-value=0.0044  Score=65.04  Aligned_cols=131  Identities=18%  Similarity=0.049  Sum_probs=94.6

Q ss_pred             ccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHH--Hhc----------
Q 015916           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV--VSR----------  101 (398)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~--~~~----------  101 (398)
                      ....++++.|+++.++.+++.....++..+ ..+..++.-|.-|-+.+-+|.+++++|.++.++-  ..+          
T Consensus       118 s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~  197 (735)
T KOG3626|consen  118 SVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIK  197 (735)
T ss_pred             hhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhh
Confidence            345678999999999999998889999865 6788999999999999999999999999988752  000          


Q ss_pred             -----c---------------------c-----CCch-HHHH-HHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHH
Q 015916          102 -----K---------------------I-----QPLS-YWQM-CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI  147 (398)
Q Consensus       102 -----~---------------------~-----~~~~-~~~l-~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi  147 (398)
                           .                     .     .+++ .|.+ ++..++.|+|..-.++....++=++-.+ +-..-+|+
T Consensus       198 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi  277 (735)
T KOG3626|consen  198 QSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGI  277 (735)
T ss_pred             ccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHH
Confidence                 0                     0     0011 3433 3467888888877777777777777664 46777888


Q ss_pred             HHhhhhhhHHHHHHHHHh
Q 015916          148 LKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus       148 ~~~~~glg~~i~~~l~~~  165 (398)
                      .....-+|.+++-.+.+.
T Consensus       278 ~~~~~~lGPaiGfllgS~  295 (735)
T KOG3626|consen  278 LYSMAILGPAIGFLLGSF  295 (735)
T ss_pred             HHHHHHhhhHHHHHHHHH
Confidence            877766666655444443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.81  E-value=0.053  Score=55.68  Aligned_cols=132  Identities=11%  Similarity=0.068  Sum_probs=91.4

Q ss_pred             hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcc
Q 015916           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGP  143 (398)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~  143 (398)
                      ....+...||+|||.....+.++..++++..+.....    ...+...+...+...+.+..+.......++.+|. .|..
T Consensus       367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~  442 (521)
T KOG0255|consen  367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD----LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNT  442 (521)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            3556899999999999999999999999988876322    1111233334444445555555667888999996 5999


Q ss_pred             hHHHHHhhhhhhHHHHHHHHHhHcCC-ChhHHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 015916          144 VSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFFLRETTPAST  201 (398)
Q Consensus       144 a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~  201 (398)
                      +.+...+...+|+.+.+.+....... ....... .+....+.++++.+++|++.....
T Consensus       443 ~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  443 AVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccCCCCC
Confidence            99999999889888887766433221 1122222 566777777777788888876544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.72  E-value=0.39  Score=48.67  Aligned_cols=151  Identities=9%  Similarity=-0.060  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhcccccccccHHHHHHHcCCCh-----hhHHHHHHHHHhhh-hh-hhhhhhhhcccCchHHHHHHHH
Q 015916           14 WLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQ-----LELNNLSVVKDIGK-AF-GLLAGLASDRIPAPIILLIGSL   86 (398)
Q Consensus        14 w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~-----~~~~~i~~~~~~~~-~~-~~~~G~l~Dr~G~r~~~~~g~~   86 (398)
                      +..++...+++++....|.   ..-++++.+..+.     ..+.++-+...+.+ +. .++.+++.+|+++++++-+-..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~---iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYT---ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3334444444444444442   3456888887743     45677655554544 33 6899999999999999888777


Q ss_pred             HHHHHHHHHHHHHhcccCC--c----------------------hHHHHHHHHHHHhhhhhhhhh-HHHHHHHHhhc-cC
Q 015916           87 EGLVGYGAQWLVVSRKIQP--L----------------------SYWQMCVFLCMGGNSTTWMNT-AVLVTCIRNFR-RN  140 (398)
Q Consensus        87 ~~~ig~~~~~~~~~~~~~~--~----------------------~~~~l~~~~~l~G~g~g~~~~-~~~~~~~~~Fp-~~  140 (398)
                      .+..-++++++......+.  +                      +.|...++.+..-+-...... .-+..+++.+. ++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            7776666666543211000  0                      123333333333332222222 45677888886 45


Q ss_pred             CcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          141 RGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       141 RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      -.+-.++...+..+|..+.+.+...+.
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777877777788777776665543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.68  E-value=0.058  Score=54.79  Aligned_cols=134  Identities=13%  Similarity=0.016  Sum_probs=85.5

Q ss_pred             hhhhhhhhcccCc-hHHHHHHHHHHHHHHHHHHHHHh--c---c--------cCCch-HHHHHHHHHHHhhhhhhhhhHH
Q 015916           65 GLLAGLASDRIPA-PIILLIGSLEGLVGYGAQWLVVS--R---K--------IQPLS-YWQMCVFLCMGGNSTTWMNTAV  129 (398)
Q Consensus        65 ~~~~G~l~Dr~G~-r~~~~~g~~~~~ig~~~~~~~~~--~---~--------~~~~~-~~~l~~~~~l~G~g~g~~~~~~  129 (398)
                      +++--++.+|+|+ |++-.++.++.+++.....+.-.  +   .        .+... .+...+...+.|+..+..+..+
T Consensus       322 s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siP  401 (477)
T TIGR01301       322 SIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIP  401 (477)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence            5566778999996 56668888888888777654311  0   0        00000 2344445667788888888899


Q ss_pred             HHHHHHhhcc---CCcchHHHHHhhhhhhHHHHHHHHHhHcC--CChhHHHHHHHHHHHHHH-HhhhhcccccCC
Q 015916          130 LVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSALFA--DDPAKFLFMLAIVPFVVC-LGAIFFLRETTP  198 (398)
Q Consensus       130 ~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~i~-~~~~~~l~~~p~  198 (398)
                      ...+++.-|+   +.|.-+|+.+.+.-+...+.+...+.+.+  ++.....+.++.+.++++ +.+.+.+|.++.
T Consensus       402 fal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       402 FALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999998883   45999999999988887777765554332  123344555555555444 444455555553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.61  E-value=0.0071  Score=45.18  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=42.1

Q ss_pred             cHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHH
Q 015916           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      |.+-..++.|+|..|++.+.....+... ..|+.|+++||+|+++.++.+..++
T Consensus        22 fl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   22 FLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            4444556799999999997766666665 4799999999999999988876554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.52  E-value=0.01  Score=59.90  Aligned_cols=125  Identities=20%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCC
Q 015916           63 AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNR  141 (398)
Q Consensus        63 ~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~R  141 (398)
                      ..++..|.+.||+|||..+....+...+.-+...+.        .+|.+.+..+..|.  +..+......+++.-. ++|
T Consensus        77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------~~~~~~~~~l~g~~--~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------GYWFFLLLGLSGGF--SAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------HHHHhhhcccccch--hhhhhhhhhheeeccchhHH
Confidence            447999999999999999999988888877766542        23333322222221  2233455666777776 469


Q ss_pred             cchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhh-cccccC
Q 015916          142 GPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF-FLRETT  197 (398)
Q Consensus       142 G~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~l~~~p  197 (398)
                      ....|++.+.++++..+.+.+.+...+..+....+.++....++.++... ++||+-
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999988877765555566666666555555443 555543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.30  E-value=0.017  Score=59.93  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhcc-cccccccHHHH-HHHcCCCh---hhHHHHHHHHHhhhhh-hhhhhhhhcccCch-HHHHHHHHHHH
Q 015916           17 FVTAVWVQAISGN-NYTFSNYSDAL-KTLMNLTQ---LELNNLSVVKDIGKAF-GLLAGLASDRIPAP-IILLIGSLEGL   89 (398)
Q Consensus        17 l~~~~~~~~~~g~-~~~~s~~~~~l-~~~~g~s~---~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r-~~~~~g~~~~~   89 (398)
                      +.+.+++.+..|. .|+...+-|+. ..-|+-+.   .+.++.+....++... +++.|.+..++++- ..++++.+++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            3333334444454 35555555654 33454443   2456666666666654 56778887766554 45567776766


Q ss_pred             HHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus        90 ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++...++.. .  .  ++......+.++.|+|.|....++...++-..|+ +-|++.|+..+...+|++++..++..++.
T Consensus       392 a~~Gama~~-~--~--~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  392 AFCGAMAAV-R--P--DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHHHHHc-c--C--CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            655554432 1  1  1223334567788888887766666555555675 58999999999999999999999888775


Q ss_pred             C
Q 015916          169 D  169 (398)
Q Consensus       169 ~  169 (398)
                      +
T Consensus       467 n  467 (599)
T PF06609_consen  467 N  467 (599)
T ss_pred             h
Confidence            4

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.24  E-value=0.049  Score=55.09  Aligned_cols=121  Identities=22%  Similarity=0.245  Sum_probs=93.2

Q ss_pred             HHHHcCCChhhHHHH-HHHHHhhhhhhh-hhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNL-SVVKDIGKAFGL-LAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM  117 (398)
Q Consensus        40 l~~~~g~s~~~~~~i-~~~~~~~~~~~~-~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l  117 (398)
                      ++..++|+..+.+.+ +....++..... ..+.+...+|-|+++.+|.+...++.+..++.       ++.|+.+...++
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------~~~w~~~~~~v~  340 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------TETWMMFAAGVV  340 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------ccchhhhHHHHH
Confidence            677899999999975 444444444444 45578888999999999999999999988875       567888877766


Q ss_pred             HhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          118 GGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      .++.. ...++..+..+++-+ ++||++.++.....++.+.+.+.+++.++.
T Consensus       341 ~~~~~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAG-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhc-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            65443 344555666777775 679999999999999999999998887653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.026  Score=55.08  Aligned_cols=128  Identities=19%  Similarity=0.057  Sum_probs=84.4

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccC--chHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIP--APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G--~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~  116 (398)
                      +.+.+..+.-+++.......+...+ ..+.|.+.||++  +......|.++.+......-++       +++.++.+-+.
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-------~~~~~L~vp~~  369 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-------TSIAQLWVPNF  369 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-------hhHHHHhhhhH
Confidence            4667775555777755555556655 689999999999  6555555555555443333333       45677776555


Q ss_pred             HHhhhhhhhhhHHHHHHHHhhc-c------CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHH
Q 015916          117 MGGNSTTWMNTAVLVTCIRNFR-R------NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKF  174 (398)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp-~------~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~  174 (398)
                      ..|++.+..+..-..+...... +      --|...++....+++|.++.|.+.+.+.+.-+..|
T Consensus       370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~w  434 (464)
T KOG3764|consen  370 GLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEW  434 (464)
T ss_pred             HHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHH
Confidence            5566666665544444444443 2      24899999999999999999999888877644333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.15  E-value=0.11  Score=52.96  Aligned_cols=116  Identities=11%  Similarity=0.052  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhhhh-hhhhhhhhhcccCc--h----H-HHHHHHHHHHHHHHHHHHHHhcccC--CchHHHHHHHHHHHhh
Q 015916           51 LNNLSVVKDIGKA-FGLLAGLASDRIPA--P----I-ILLIGSLEGLVGYGAQWLVVSRKIQ--PLSYWQMCVFLCMGGN  120 (398)
Q Consensus        51 ~~~i~~~~~~~~~-~~~~~G~l~Dr~G~--r----~-~~~~g~~~~~ig~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~  120 (398)
                      .+|+.+...+..+ ++|+.+++-.|..+  |    + =+.+|.++.+++++.+.+......+  ..+.+.+.+..++..+
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            3444444545443 36776666555422  1    1 2678889999999888654332111  1355666777788888


Q ss_pred             hhhhhhhHHHHHHHHhhccC-CcchHHHHHhhh-hhhHHHHHHHHHhH
Q 015916          121 STTWMNTAVLVTCIRNFRRN-RGPVSGILKGYV-GLSTAIFTDLCSAL  166 (398)
Q Consensus       121 g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~-glg~~i~~~l~~~~  166 (398)
                      |--+..+.....+++.-|+| ||+.+|+..... .+|..+...+.+..
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88878888899999999976 999999986633 46666666655543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.04  E-value=0.12  Score=50.74  Aligned_cols=122  Identities=19%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             HHHcCCChhhHHHHHHHHHhhhhhh-hhhhhhhc-ccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           41 KTLMNLTQLELNNLSVVKDIGKAFG-LLAGLASD-RIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        41 ~~~~g~s~~~~~~i~~~~~~~~~~~-~~~G~l~D-r~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      -+-||.|.+|..-++.....|.+.+ ...|++.. |.+++++..+|+....+++.+..++  +..  .+.+.+...-++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a--~~~--~~~~~~~~~~~l~  311 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA--GPL--GSPWLFRPGVFLL  311 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH--Hhc--ccchHHHHHHHHH
Confidence            4678999999888888777888764 46777655 8999999999999998888776554  211  3466777788899


Q ss_pred             hhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhH
Q 015916          119 GNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  166 (398)
                      |+|.|...+.+...+.+.-+ ++.|+.+|..-+...++..+...+....
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887775 4679888887766655555554444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.89  E-value=2.5  Score=42.45  Aligned_cols=72  Identities=15%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             hHHHHhccHhHHHHHHHHHhcccceeeeeechHHHHHHhCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       324 t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+++..|++-|.-- ++..+.....+.+-+.+..++.+.|+++  .+..=++-++....|-++..++.+|+|..+
T Consensus       251 ~w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr  324 (432)
T PF06963_consen  251 GWRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVR  324 (432)
T ss_pred             cHHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            35667777755533 3344444445566777888899999986  456778888889999999999999988654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.52  E-value=0.032  Score=51.67  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=63.7

Q ss_pred             HHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhh
Q 015916           42 TLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN  120 (398)
Q Consensus        42 ~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  120 (398)
                      ++++....|++-+..++.-.. +++.+.|-+.|+-|||+..    +.+++.|.+...+-.    ++.+-.+.++|++.|+
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac----vtycitYiLsCiTKh----SpqYkVLmVGR~LGGi  136 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC----VTYCITYILSCITKH----SPQYKVLMVGRVLGGI  136 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce----eeehHHHHHHHHhhc----CCceEEEeehhhhhhH
Confidence            678888888887555543333 5689999999999999864    456666766665421    2456677889999999


Q ss_pred             hhhhhhhHHHHHHHHhhccCCcchH
Q 015916          121 STTWMNTAVLVTCIRNFRRNRGPVS  145 (398)
Q Consensus       121 g~g~~~~~~~~~~~~~Fp~~RG~a~  145 (398)
                      .+.+.+.+--.....--.+|||.-.
T Consensus       137 aTsLLFSaFEsWliaEHnekr~Feq  161 (454)
T KOG4332|consen  137 ATSLLFSAFESWLIAEHNEKRGFEQ  161 (454)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCChH
Confidence            9988765433222211124566543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.39  E-value=1.1  Score=45.01  Aligned_cols=127  Identities=13%  Similarity=0.001  Sum_probs=80.9

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc-C--Cch
Q 015916           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI-Q--PLS  107 (398)
Q Consensus        32 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~-~--~~~  107 (398)
                      +|+.....+...-|++...++.+-....+..+. .+.+.++.+|+|..+.-+++.........+....+.... +  ..+
T Consensus       276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s  355 (432)
T PF06963_consen  276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS  355 (432)
T ss_pred             cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence            344333334344499999999875555555554 689999999999999999998876655444433322111 1  012


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHH
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAI  158 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i  158 (398)
                      ...+..+-++.=+|.=..+.+....++++-|+ +||...|.-.+...+-..+
T Consensus       356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            22222223333344444567788889999985 7999999998877665444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.33  E-value=0.54  Score=46.54  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcch
Q 015916           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPV  144 (398)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a  144 (398)
                      -+.+-++.+|...+.=+.+..++..+|.++.+++       ++.+.-.++-++.+++.|++-.....+ ...|++   .+
T Consensus        76 Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~---~~  144 (402)
T PF02487_consen   76 KLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------PSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK---SS  144 (402)
T ss_pred             HHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------cchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc---cc
Confidence            5677788898876666667777888888887664       456555566778888888877655554 556665   24


Q ss_pred             HHHHHhhhhhhHHHHHHHHHhHcC--CChhHHHHHHHHHHHHHHHhhhhcccccC
Q 015916          145 SGILKGYVGLSTAIFTDLCSALFA--DDPAKFLFMLAIVPFVVCLGAIFFLRETT  197 (398)
Q Consensus       145 ~gi~~~~~glg~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~l~~~p  197 (398)
                      ++-..+|.|.++.+.+..+..+..  -..+..++.....|.+..+...+.++.++
T Consensus       145 l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  145 LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            556667778777777766554443  23455566666667666666666666544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=0.23  Score=49.94  Aligned_cols=99  Identities=12%  Similarity=-0.115  Sum_probs=75.3

Q ss_pred             HHHhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 015916           57 VKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRN  136 (398)
Q Consensus        57 ~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~  136 (398)
                      ........+++++.+.|+.|+|..+.+|+..+..-.+.+.+        .|-+.++....+.|+|.++.+..--.+..++
T Consensus        59 iY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------~N~y~~yfssallG~Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   59 IYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------PNSYYLYFSSALLGFGAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------cchHHHHHHHHHhhhhHHheecccceehhhc
Confidence            33344455789999999999999999999888766555443        3556677788999999998888777888999


Q ss_pred             hcc-CCcchHHHHHhhhhhhHHHHHHHH
Q 015916          137 FRR-NRGPVSGILKGYVGLSTAIFTDLC  163 (398)
Q Consensus       137 Fp~-~RG~a~gi~~~~~glg~~i~~~l~  163 (398)
                      .++ ++.+-+++..+..-.+..+++.+.
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence            875 588888888887766655554443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.99  E-value=3  Score=42.10  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             HHHHHhhhhh-hhhhhhh---hcccCchHHHHHHHHHHHHHHHHHHHHHhcccC-----------CchHHHHHHHHHHHh
Q 015916           55 SVVKDIGKAF-GLLAGLA---SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ-----------PLSYWQMCVFLCMGG  119 (398)
Q Consensus        55 ~~~~~~~~~~-~~~~G~l---~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G  119 (398)
                      .....++.+. +...+.+   .+|+|+++++.++..+..+++++.....-...+           .+++....+..++.|
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            3333444443 4555544   577999999999999999988887654221110           113344455778899


Q ss_pred             hhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHH
Q 015916          120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTD  161 (398)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~  161 (398)
                      ++.+...+.....++..+|++|..+..+.....++++.+...
T Consensus       365 ~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             hHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence            999988888888899999999999999999988888766433

>PTZ00207 hypothetical protein; Provisional

Probab=92.96  E-value=1.8  Score=45.29  Aligned_cols=124  Identities=10%  Similarity=0.007  Sum_probs=80.8

Q ss_pred             HHHHHHc-CC-Chhh-----HHHHHHHHHhhhhh-hhhhhhhhccc----CchHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           38 DALKTLM-NL-TQLE-----LNNLSVVKDIGKAF-GLLAGLASDRI----PAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        38 ~~l~~~~-g~-s~~~-----~~~i~~~~~~~~~~-~~~~G~l~Dr~----G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      .++-+.+ |. ++.+     +++++....+|-+. +.+.=++..|.    =||+..+....++.++.+++++..      
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~------  450 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL------  450 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC------
Confidence            5566667 66 2231     23345555555543 44442222222    255555555555778888877641      


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHH-HHHHhHcC
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFT-DLCSALFA  168 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~-~l~~~~~~  168 (398)
                      + -..+++..++.|++.|........+..+.|-|+-|+---+......+|+.+++ .+++.+++
T Consensus       451 p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd  513 (591)
T PTZ00207        451 P-KAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT  513 (591)
T ss_pred             C-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            1 13577888999999998888888889999997789999998888888888884 44554543

>PRK03612 spermidine synthase; Provisional

Probab=92.92  E-value=4.2  Score=41.92  Aligned_cols=33  Identities=9%  Similarity=0.033  Sum_probs=19.8

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhh
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLAS   72 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~   72 (398)
                      +.-.+|-+..+.+.+...+..|..+ +.++|++.
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~   74 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL   74 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445677777766655555555544 56666665

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=92.74  E-value=0.33  Score=47.36  Aligned_cols=119  Identities=15%  Similarity=0.078  Sum_probs=78.9

Q ss_pred             HHcCCChhhHHHH-HHHHHhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Q 015916           42 TLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIP--APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (398)
Q Consensus        42 ~~~g~s~~~~~~i-~~~~~~~~~~~~~~G~l~Dr~G--~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (398)
                      ..+|++..|.+-+ ...+..+..++....+..||..  .+-.+..+..++.-.++..+..       .....+++...+-
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------~~~~~l~~~s~l~  362 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------RTPVVLYLGSTLK  362 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------ccchhhhHHHHHH
Confidence            5689999999884 4444444456888888889877  5656655555555444444332       2234455555555


Q ss_pred             hhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      .+......+.-...+.+.-|+ +||.++|+..+...++=++.|.+.+..+
T Consensus       363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            555555544445556677785 6999999999988888888888775554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.73  E-value=0.53  Score=46.08  Aligned_cols=117  Identities=11%  Similarity=0.036  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccC--CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC----CcchHHHHHhhh
Q 015916           79 IILLIGSLEGLVGYGAQWLVVSRKIQ--PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN----RGPVSGILKGYV  152 (398)
Q Consensus        79 ~~~~~g~~~~~ig~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~----RG~a~gi~~~~~  152 (398)
                      +++++|.+++.+|++++.++......  +.+.+.++++..+.++|.|..=+......++.|+++    |-........+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            67899999999999997665332111  112356677777888999987666777788999753    344555566777


Q ss_pred             hhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhhhhcccc
Q 015916          153 GLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRE  195 (398)
Q Consensus       153 glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~  195 (398)
                      .+|+.+...+...+-++..|.+.+.++.+..+++++..+.-++
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~  124 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence            8888887777666666667877777777777766666655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=91.48  E-value=0.2  Score=37.28  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             eeechHHHHHHhCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHhc
Q 015916          351 VMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMVH  397 (398)
Q Consensus       351 ~~~n~~~i~~~~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~~  397 (398)
                      +...++-..+++|++  +.....++.-+...++..++|++.||+++++.
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~   67 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV   67 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            345666778889997  46778899999999999999999999998763

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.85  E-value=5.6  Score=40.07  Aligned_cols=93  Identities=16%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccC-CchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcc
Q 015916           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ-PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGP  143 (398)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~-~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~  143 (398)
                      .+..-.+..|+..|.=+..+.++..+..++.........+ ...++..++..++.|++.+.... +.-..+..||++   
T Consensus        62 ~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~-s~~gla~~fp~~---  137 (437)
T TIGR00939        62 NSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQG-SLFGLAGVFPST---  137 (437)
T ss_pred             HHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcc-cchhhcccCCHH---
Confidence            4555566667665333333433333222222111111111 12344444556677777776543 344466678854   


Q ss_pred             hHHHHHhhhhhhHHHHHH
Q 015916          144 VSGILKGYVGLSTAIFTD  161 (398)
Q Consensus       144 a~gi~~~~~glg~~i~~~  161 (398)
                      -++....|.|+++.+.+.
T Consensus       138 ~~~a~~~G~g~aGv~~s~  155 (437)
T TIGR00939       138 YSSAVMSGQGLAGVLTSL  155 (437)
T ss_pred             HHHHHHhcchhHHHHHHH
Confidence            334445566666665443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=90.84  E-value=0.75  Score=48.64  Aligned_cols=66  Identities=11%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             ccccccccHHHH-HHHcCCChhhHHHHHHHHHh-hhhh-hhhhhhhhcccC--chHHHHHHHHHHHHHHHH
Q 015916           29 NNYTFSNYSDAL-KTLMNLTQLELNNLSVVKDI-GKAF-GLLAGLASDRIP--APIILLIGSLEGLVGYGA   94 (398)
Q Consensus        29 ~~~~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~-~~~~-~~~~G~l~Dr~G--~r~~~~~g~~~~~ig~~~   94 (398)
                      ..+.+..+.|.+ ++++|++..+.+++.....+ +..+ .+++|++.||++  .|+++..+.++..++.+.
T Consensus       345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            345556677764 67899999999986554444 4444 689999999998  566777776666666544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.03  E-value=0.91  Score=45.62  Aligned_cols=152  Identities=19%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             cCCChhhHHHHHHHHHhhhhhh-hhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhc-----ccCCchHHHHHHHHHH
Q 015916           44 MNLTQLELNNLSVVKDIGKAFG-LLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR-----KIQPLSYWQMCVFLCM  117 (398)
Q Consensus        44 ~g~s~~~~~~i~~~~~~~~~~~-~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~-----~~~~~~~~~l~~~~~l  117 (398)
                      .|+++...+.+...+.++.+.+ .+..+..-+..-|+++....++..+..+.-...+.+     .+++  .+..+.-.++
T Consensus       250 p~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d--~~f~lgd~~l  327 (433)
T PF03092_consen  250 PHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPD--QWFALGDTIL  327 (433)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCC--eEEEEEhHHH
Confidence            3477777777666666666553 566666667788888887777666544432211111     1111  1111223455


Q ss_pred             HhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhHcCC------C--hhHHHHHHHHHHHHHHHh
Q 015916          118 GGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFAD------D--PAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~------~--~~~~~~~~~~~~~~i~~~  188 (398)
                      ..+-..+.+.+....++|..|+. .|+..++..+...+|..+...+...+.+.      +  .-.++.+++.+..++.+.
T Consensus       328 ~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~  407 (433)
T PF03092_consen  328 EEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLP  407 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            55555666778888999999975 89999999999999988877776665431      1  123444444444455555


Q ss_pred             hhhcccccC
Q 015916          189 AIFFLRETT  197 (398)
Q Consensus       189 ~~~~l~~~p  197 (398)
                      ...++++..
T Consensus       408 ll~lLp~~~  416 (433)
T PF03092_consen  408 LLFLLPPQK  416 (433)
T ss_pred             HHHHcCCCc
Confidence            555555533

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.83  E-value=0.89  Score=45.39  Aligned_cols=136  Identities=10%  Similarity=0.043  Sum_probs=81.7

Q ss_pred             ccccccc---ccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcc----cCchHHHHH-HHHHHHHHHHHHHHH
Q 015916           28 GNNYTFS---NYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAPIILLI-GSLEGLVGYGAQWLV   98 (398)
Q Consensus        28 g~~~~~s---~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr----~G~r~~~~~-g~~~~~ig~~~~~~~   98 (398)
                      |..++|.   .|.+|+.+..|++....+.+-...-+.. .++|+.|..+||    |||||..+. +.+..+++.+++.++
T Consensus        43 Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a  122 (498)
T KOG0637|consen   43 GVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA  122 (498)
T ss_pred             HHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH
Confidence            4444443   3677788889999987777544444544 569999999997    898886654 445556677766553


Q ss_pred             Hhc-----ccCCc-----hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcc-hHHHHHhhhhhhHHHHHHHH
Q 015916           99 VSR-----KIQPL-----SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGP-VSGILKGYVGLSTAIFTDLC  163 (398)
Q Consensus        99 ~~~-----~~~~~-----~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~-a~gi~~~~~glg~~i~~~l~  163 (398)
                      ..-     .....     ...+..+...+.=+..-....++-....+.+. ++|-+ |.+......++|+.+.-.+.
T Consensus       123 aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  123 ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence            210     00000     11122222333333443445567777777773 33333 88888888888877765544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=87.38  E-value=1.1  Score=44.62  Aligned_cols=138  Identities=13%  Similarity=-0.003  Sum_probs=73.2

Q ss_pred             cccccccccHHHHHHHcCCChhhHHHHHHHHHhhh-hhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015916           28 GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIP-APIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (398)
Q Consensus        28 g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G-~r~~~~~g~~~~~ig~~~~~~~~~~~~~~  105 (398)
                      |..|+.+.........-|++....+++.....+++ +.+...|.+.||.. -|.++++......++.+.+..+ ....  
T Consensus       280 g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~~~--  356 (480)
T KOG2563|consen  280 GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC-TLFL--  356 (480)
T ss_pred             HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hccC--
Confidence            34455554444333345677777788655555555 45899999999965 4555555555555553222221 1111  


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHH-HHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVT-CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~-~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ...+.++.-..+.|+.....++...-. +..-||..-|.-.|++.....+=+.+...+.+...+
T Consensus       357 ~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~  420 (480)
T KOG2563|consen  357 GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE  420 (480)
T ss_pred             CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence            112333332223333222222322323 456779877888888776655555565555555544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=84.69  E-value=1.3  Score=45.19  Aligned_cols=57  Identities=21%  Similarity=0.100  Sum_probs=43.7

Q ss_pred             HHHHHHHcCCChhhHHHHHHHHH-hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q 015916           37 SDALKTLMNLTQLELNNLSVVKD-IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYG   93 (398)
Q Consensus        37 ~~~l~~~~g~s~~~~~~i~~~~~-~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~   93 (398)
                      .+.+-+++|++..+.+.+....- +..+..|+.|.++||+-.|+.+++|..+..+...
T Consensus        34 l~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~   91 (618)
T KOG3762|consen   34 LAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT   91 (618)
T ss_pred             HHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            34456789999999999644444 4445689999999999999988888877665443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=84.54  E-value=15  Score=37.26  Aligned_cols=130  Identities=9%  Similarity=0.083  Sum_probs=81.4

Q ss_pred             cccccHHHHH-HH-cC--CChhhHHHHHHHHHhhh-hhhhhhhhhhcccC-------chHHHHHHHHHHHHHHHHHHHHH
Q 015916           32 TFSNYSDALK-TL-MN--LTQLELNNLSVVKDIGK-AFGLLAGLASDRIP-------APIILLIGSLEGLVGYGAQWLVV   99 (398)
Q Consensus        32 ~~s~~~~~l~-~~-~g--~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G-------~r~~~~~g~~~~~ig~~~~~~~~   99 (398)
                      +++.|..... ++ +|  ++.++.+   +...+.. +++|+..++.-+.+       .+.=+.+|.++++.+++++....
T Consensus       306 sl~~~a~~~v~~~~~g~~vp~~~fQ---slNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~  382 (498)
T COG3104         306 SLNLYADRNVNRQIFGFEVPPAWFQ---SLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAG  382 (498)
T ss_pred             hHHHHHHHhhcccccceecCHHHHH---hhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            4555655542 23 33  3444333   3333333 23555555555522       23456677778888888776541


Q ss_pred             --hcc-cCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHH
Q 015916          100 --SRK-IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCS  164 (398)
Q Consensus       100 --~~~-~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~  164 (398)
                        .+. ....+.+.+....+++++|-=+..+..+..+.+.-|++ .+.+++........|..+...+..
T Consensus       383 ~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         383 IWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence              121 22245777777788888988778888889999999976 899999888877777776665544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=83.09  E-value=59  Score=33.33  Aligned_cols=48  Identities=13%  Similarity=-0.018  Sum_probs=28.7

Q ss_pred             HHHHHHH--cCCChhhHHHHHHHHHhhh--hh-hhh-hhhhhcccCchHHHHHH
Q 015916           37 SDALKTL--MNLTQLELNNLSVVKDIGK--AF-GLL-AGLASDRIPAPIILLIG   84 (398)
Q Consensus        37 ~~~l~~~--~g~s~~~~~~i~~~~~~~~--~~-~~~-~G~l~Dr~G~r~~~~~g   84 (398)
                      .|-+-+.  -+.|-+|.+.++.+.--..  +. +|+ =.....|+||||.-++-
T Consensus        23 iPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP   76 (544)
T PF13000_consen   23 IPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP   76 (544)
T ss_pred             chhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence            3555554  5778888777655433332  23 443 34456689999987654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 50/333 (15%), Positives = 102/333 (30%), Gaps = 105/333 (31%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSV--VKDIGKAFGLLAGL 70
           K+L  ++ +  +    +  T   Y +    L N  Q+     +V  ++   K   L   L
Sbjct: 92  KFL--MSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQV-FAKYNVSRLQPYLK---LRQAL 144

Query: 71  ASDRIPAPIILLIGSLEGLVGYGAQWLVV----SRKIQPLSYWQMCVFLCMGGNSTTWMN 126
              R PA  +L+    +G++G G  W+ +    S K+Q    ++  +F         W+ 
Sbjct: 145 LELR-PAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKMDFK--IF---------WL- 187

Query: 127 TAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLF---------M 177
                    N +    P + +L+    L   I  +  S        K            +
Sbjct: 188 ---------NLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYF-------------SIINTVAIVVAL 224
           L   P+  CL     L        V +  +    F              + + ++     
Sbjct: 238 LKSKPYENCL---LVLLN------V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 225 YLQVYDFLP--NKSETLALIFSGILII---------LLASPVAIPVYS-----FIKSW-- 266
           ++ +          E  +L     L           L  +P  + + +      + +W  
Sbjct: 288 HISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 267 ----NLNRKRT---------EPDVEEQQVVEPL 286
               N ++  T         EP  E +++ + L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.9
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.81
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.78
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.71
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.58
2xut_A	524	Proton/peptide symporter family protein; transport	99.44
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.01
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.93
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.83
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.19
2xut_A	524	Proton/peptide symporter family protein; transport	98.17

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.90  E-value=1.1e-22  Score=200.91  Aligned_cols=293  Identities=12%  Similarity=0.055  Sum_probs=198.0

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      +++|..+...++..+..+. .+.++.+.|.+++++|++..+.+++.+...++..+ .++.|++.||+|||++++++.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            3455555544444444443 35667788899999999999999987877888765 899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +++.+++.....    .++++.+++.|++.|++.+..+++...++.+++|+ +|++++|+...+.++|..+.+.+...+.
T Consensus       102 ~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          102 ALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988843211    15788999999999999999888899999999985 6999999999999999999998887765


Q ss_pred             -CCChh---HHHHHHHHHHHHHHHhhhhcccccCCCCCC-chhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHH
Q 015916          168 -ADDPA---KFLFMLAIVPFVVCLGAIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI  242 (398)
Q Consensus       168 -~~~~~---~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (398)
                       +....   .-.                 -+.+++.... ......+||..+...+.+.+                    
T Consensus       178 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--------------------  220 (438)
T 3o7q_A          178 LSNVPHQSQDVL-----------------DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL--------------------  220 (438)
T ss_dssp             HTSSCCCCHHHH-----------------HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             hccccccccccc-----------------ccCCcchhhhhhhhhhhhHHHHHHHHHHHHH--------------------
Confidence             32100   000                 0000000000 00001225543322211000                    


Q ss_pred             HHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCc
Q 015916          243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED  322 (398)
Q Consensus       243 ~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  322 (398)
                             ++....  .    +. +.|+.++         +.++   +               ++           +....
T Consensus       221 -------~~~~~~--~----~~-~~p~~~~---------~~~~---~---------------~~-----------~~~~~  248 (438)
T 3o7q_A          221 -------LVALLI--M----LT-KFPALQS---------DNHS---D---------------AK-----------QGSFS  248 (438)
T ss_dssp             -------HHHHHH--H----HC-CCCCCTT---------TCCC---C---------------SS-----------TTSHH
T ss_pred             -------HHHHHH--H----HH-cCCcccc---------cccc---c---------------cc-----------ccchh
Confidence                   000000  0    11 1010100         0000   0               00           00112


Q ss_pred             chHHHHhccHhHHHHHHHHHhcccceeeeeechHHH-HHHh-CCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL-GYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       323 ~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i-~~~~-g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      .+.++++|++.+|...+..++..+....+.+.++.+ .++. |.+.  .....++..+++.+|+++.|+++||++||+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  326 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            456889999999999999888888777788888988 8776 8763  667888999999999999999999999986

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.87  E-value=1.8e-22  Score=199.86  Aligned_cols=286  Identities=14%  Similarity=0.026  Sum_probs=192.9

Q ss_pred             cHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHH
Q 015916           13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (398)
Q Consensus        13 ~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~i   90 (398)
                      +|..+...++..+..+ ..+.++.+.|.+.+++ ++..+.+++.+...++..+ .++.|++.||+|+|+++.++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            3555555555544443 3466777888888899 9999999987777787765 89999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      +.+++++.... .  ++++.+++.|++.|++.+..+++....+.+++|+ +|++++|+...+.++|..+.+.+...+.+.
T Consensus       105 ~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          105 VMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988761100 0  4677888899999999998888889999999984 699999999999999999998887765432


Q ss_pred             Ch-hHHHHHHHHHHH-HHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHH
Q 015916          170 DP-AKFLFMLAIVPF-VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL  247 (398)
Q Consensus       170 ~~-~~~~~~~~~~~~-~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
                      .. |++.+.+..+.. +..++..+++|+.|++..                                              
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  215 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG----------------------------------------------  215 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC----------------------------------------------
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcC----------------------------------------------
Confidence            11 222222111111 111111112222211100                                              


Q ss_pred             HHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHH
Q 015916          248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE  327 (398)
Q Consensus       248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~  327 (398)
                                               .. +. ++.+.+.   ++     +   .   +++       ++++...++...++
T Consensus       216 -------------------------~~-~~-~~~~~~~---~~-----~---~---~~~-------~~~~~~~~~~~~~~  247 (451)
T 1pw4_A          216 -------------------------LP-PI-EEYKNDY---PD-----D---Y---NEK-------AEQELTAKQIFMQY  247 (451)
T ss_dssp             -------------------------CC-SC-TTTCCC----------------------------------CCTHHHHHH
T ss_pred             -------------------------CC-Ch-hhhcccc---cc-----c---c---hhh-------hhcccccccchHHH
Confidence                                     00 00 0000000   00     0   0   000       00011112334678


Q ss_pred             HhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHH--HhHh
Q 015916          328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYF--IKMV  396 (398)
Q Consensus       328 ~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~--~~~~  396 (398)
                      .+|++.+|.+.+..++......++.+.++.+.++ .|.++  .....++.++++.+|+++.|+++||+  ++|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  321 (451)
T 1pw4_A          248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  321 (451)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            9999999999998888877777777888888887 67763  56788999999999999999999999  8775

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.81  E-value=1.2e-19  Score=175.71  Aligned_cols=244  Identities=13%  Similarity=0.045  Sum_probs=178.4

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      ..+....|.+.+++|+|..+.+++.+...++... .++.|++.||+|||+++.++.++..++.++..+.       ++++
T Consensus        17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~   89 (375)
T 2gfp_A           17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLT   89 (375)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred             HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence            3445567888999999999999987777777754 8999999999999999999999999999888765       5688


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  188 (398)
                      .+++.|++.|++.+..++.....+.+++| ++|+++.++...+.++|..+.+.+...+.+                    
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------------------  149 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT--------------------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------------------
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------
Confidence            88889999999999888888899999998 579999999999999999999888776543                    


Q ss_pred             hhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccc
Q 015916          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (398)
Q Consensus       189 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (398)
                                        ..+||..+...+.+                           .++..... ...   ++    
T Consensus       150 ------------------~~~~~~~~~~~~~~---------------------------~~~~~~~~-~~~---~~----  176 (375)
T 2gfp_A          150 ------------------MWNWRACYLFLLVL---------------------------CAGVTFSM-ARW---MP----  176 (375)
T ss_dssp             ------------------HHHHHHHHHHHHHH---------------------------HHHHHCCC-CCS---SC----
T ss_pred             ------------------hccHHHHHHHHHHH---------------------------HHHHHHHH-HHH---Cc----
Confidence                              24555433211100                           00000100 000   11    


Q ss_pred             cccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccce
Q 015916          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (398)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g  348 (398)
                      ++++          .++                   +        ++  +  ...+.++.+|+|++|.+.+..++.....
T Consensus       177 ~~~~----------~~~-------------------~--------~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (375)
T 2gfp_A          177 ETRP----------VDA-------------------P--------RT--R--LLTSYKTLFGNSGFNCYLLMLIGGLAGI  215 (375)
T ss_dssp             CCST----------TTC-------------------C--------CC--C--TTTCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCC----------CCc-------------------c--------cc--c--HHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            0000          000                   0        00  0  0123467889999999988887776666


Q ss_pred             eeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916          349 LAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKM  395 (398)
Q Consensus       349 ~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~  395 (398)
                      ..+....+.+.++ .|.+  +.....++.+++..+++++.|++.||.+++
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~  265 (375)
T 2gfp_A          216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  265 (375)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777777666 6765  356788889999999999999999999874

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.78  E-value=3.2e-19  Score=178.87  Aligned_cols=169  Identities=13%  Similarity=0.054  Sum_probs=131.9

Q ss_pred             cccHHHHHHHcCCC--------hhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc-
Q 015916           34 SNYSDALKTLMNLT--------QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI-  103 (398)
Q Consensus        34 s~~~~~l~~~~g~s--------~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~-  103 (398)
                      +...|.++++++.+        ..+.+++.+...+|..+ +++.|++.||+|||++++++.+++.++.+++++...... 
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~  111 (491)
T 4gc0_A           32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS  111 (491)
T ss_dssp             GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            44567777776432        34556666777788876 689999999999999999999999999988874211000 


Q ss_pred             ----------CCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC----
Q 015916          104 ----------QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA----  168 (398)
Q Consensus       104 ----------~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~----  168 (398)
                                .++++++++++|++.|+|.|..++....++.|+.|+ +||+..++...+..+|..+...+......    
T Consensus       112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  191 (491)
T 4gc0_A          112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA  191 (491)
T ss_dssp             SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence                      025788999999999999999888899999999985 69999999999888887776666544432    


Q ss_pred             ----CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 015916          169 ----DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (398)
Q Consensus       169 ----~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~  202 (398)
                          ...|+++..+...+.++.++..+++||.|+++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~  229 (491)
T 4gc0_A          192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS  229 (491)
T ss_dssp             TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred             ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH
Confidence                1357888888888999999999999999987654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.71  E-value=1.5e-16  Score=159.39  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=122.2

Q ss_pred             HHHHHH-----cCCChhhHHHHHHHHHhhhhh-hhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916           38 DALKTL-----MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (398)
Q Consensus        38 ~~l~~~-----~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~  110 (398)
                      +.++++     +|++..+.+++.+...++..+ .++.|++.|| +|||+++.++.++..++.++++++       ++++.
T Consensus        38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~  110 (491)
T 4aps_A           38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGASA  110 (491)
T ss_dssp             HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CSTTH
T ss_pred             HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhHHH
Confidence            335555     999999999987777777765 7999999999 899999999999999998887653       46778


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhc-cC--CcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RN--RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~--RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  187 (398)
                      +++.|++.|+|.+...++....+.+++| ++  |+.+.++...+..+|..+.+.+...+.+...|++.+.+..+..++.+
T Consensus       111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            8889999999999888888899999998 45  67788888899999999999998888776668877777766666555


Q ss_pred             hhhhcc
Q 015916          188 GAIFFL  193 (398)
Q Consensus       188 ~~~~~l  193 (398)
                      +..++.
T Consensus       191 ~~~~~~  196 (491)
T 4aps_A          191 LVYYFG  196 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.58  E-value=2.8e-15  Score=147.76  Aligned_cols=129  Identities=14%  Similarity=0.089  Sum_probs=85.3

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHH-HHhcccCCchH-HH
Q 015916           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSY-WQ  110 (398)
Q Consensus        34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~-~~~~~~~~~~~-~~  110 (398)
                      +.+...+++++|+|..+.+++.+...++..+ +++.|++.||+|||++++++..+..++...... ...     ... ..
T Consensus        28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~  102 (417)
T 2cfq_A           28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYN  102 (417)
T ss_dssp             TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence            3333346778999999999977777777755 899999999999999999988877553221111 000     000 01


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHhhc---cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (398)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~~~  167 (398)
                      +...+.+.+.+.+..+.+.......+.+   ++||.+.|.......+|..+.+.+...+.
T Consensus       103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~  162 (417)
T 2cfq_A          103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234555565555554444445555654   45788899988888899888887776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.44  E-value=1.9e-12  Score=130.70  Aligned_cols=149  Identities=17%  Similarity=0.031  Sum_probs=121.9

Q ss_pred             HHHHHHcC------CChhhHHHHHHHHHhhhhh-hhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHHHHhcccCCc-hH
Q 015916           38 DALKTLMN------LTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPL-SY  108 (398)
Q Consensus        38 ~~l~~~~g------~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~-~~  108 (398)
                      +.+++++|      ++..+.+++.+...++..+ .++.|++.||+ |+|+++.++.++..++.+++.++       . ++
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~  109 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------EHSV  109 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------SSCH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------cccH
Confidence            44678899      9999999987777777755 79999999999 99999999999999998887764       4 67


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHH---HHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI---LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi---~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (398)
                      +.+++.+++.|++.+...++....+.+++|+ +||++.++   ...+.++|..+.+.+...+.+...|++.+.+..+..+
T Consensus       110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~  189 (524)
T 2xut_A          110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMF  189 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            8888899999999998888888999999985 68887777   8888899999999888877766667777776666665


Q ss_pred             HHHhhhhcc
Q 015916          185 VCLGAIFFL  193 (398)
Q Consensus       185 i~~~~~~~l  193 (398)
                      +.++..++.
T Consensus       190 ~~~~~~~~~  198 (524)
T 2xut_A          190 VATVFFWLG  198 (524)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHh
Confidence            555555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.01  E-value=8.8e-10  Score=108.36  Aligned_cols=158  Identities=9%  Similarity=-0.008  Sum_probs=114.6

Q ss_pred             ccccccHHHHH-HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhccc--CchHHHHHHHHHHH-HHHHHHHHHHhcccCC
Q 015916           31 YTFSNYSDALK-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIILLIGSLEGL-VGYGAQWLVVSRKIQP  105 (398)
Q Consensus        31 ~~~s~~~~~l~-~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~~g~~~~~-ig~~~~~~~~~~~~~~  105 (398)
                      +.+..+.|.+. +.+|++..+.+++.....++... .++.|++.||+  |+|+.+.++..+.. ++++++.+.     ++
T Consensus       269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  343 (451)
T 1pw4_A          269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----PA  343 (451)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----CT
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----cc
Confidence            34455666664 44899999999976766676655 78999999999  99999988887766 565554321     11


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhh-hHHHHHHHHHhHcCCChhHHHHHHHHHHH
Q 015916          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGL-STAIFTDLCSALFADDPAKFLFMLAIVPF  183 (398)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~~~~~~~~~~~~~~~  183 (398)
                      .+.+.+.+..++.|++.+..+......+.+.+|++ ||++.|+......+ |+.+.+.+.+.+.+...+...+.+..+..
T Consensus       344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  423 (451)
T 1pw4_A          344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS  423 (451)
T ss_dssp             TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            24566666667777777766666678889999965 99999999999999 99999999988887655555555544444


Q ss_pred             HHHHhhhhcc
Q 015916          184 VVCLGAIFFL  193 (398)
Q Consensus       184 ~i~~~~~~~l  193 (398)
                      +++.+..+++
T Consensus       424 ~~~~~~~~~~  433 (451)
T 1pw4_A          424 ILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4554444444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.93  E-value=2.8e-08  Score=98.96  Aligned_cols=167  Identities=12%  Similarity=0.077  Sum_probs=107.7

Q ss_pred             ccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (398)
Q Consensus        31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~  109 (398)
                      +....|.+.+.+..+.+..+.........+... ..++++++.||+|||+.++.+.....++.+.++.......+ ....
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~  372 (491)
T 4gc0_A          294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIVA  372 (491)
T ss_dssp             HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHH
T ss_pred             hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hHHH
Confidence            344567788888888888776665555555554 47899999999999999999999998888877655433221 1122


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhHcCCC-------hhHHHHHHHHH
Q 015916          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFADD-------PAKFLFMLAIV  181 (398)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~~-------~~~~~~~~~~~  181 (398)
                      .+.+..+..+.+.+.. .....+.+|.||.+ |++++|+..+...+++.+.+.+...+.+..       ....+++.+++
T Consensus       373 ~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~  451 (491)
T 4gc0_A          373 LLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  451 (491)
T ss_dssp             HHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            2222333333333432 34566788999964 999999999998899888776665543321       11123344444


Q ss_pred             HHHHHHhhhhcccccCCC
Q 015916          182 PFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       182 ~~~i~~~~~~~l~~~p~~  199 (398)
                      ..+..+...+++||....
T Consensus       452 ~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          452 GVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHheecCCCCC
Confidence            555555556677766543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.93  E-value=7.4e-09  Score=101.39  Aligned_cols=130  Identities=9%  Similarity=-0.056  Sum_probs=97.2

Q ss_pred             ccccccHHHH-H-HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCch
Q 015916           31 YTFSNYSDAL-K-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (398)
Q Consensus        31 ~~~s~~~~~l-~-~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~  107 (398)
                      +.+..+.|.+ . +.+|++..+.+++.....++... .++.|++.||+|+|+++.++.++..++.++..+.       ++
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~  347 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GG  347 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------CH
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------CC
Confidence            3444555555 4 45699999999976666666654 7899999999999999999999888887776543       23


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      .+.+. ..++.|++.+..+........+.+|++|+.+.++... ..+|+.+.+.+.+.+.+.
T Consensus       348 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          348 HVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            33333 3356677777777777777789999889999998874 458999999988887764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.90  E-value=5.8e-09  Score=104.01  Aligned_cols=163  Identities=5%  Similarity=-0.053  Sum_probs=105.2

Q ss_pred             cHHH-HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHH-----HHHHHHHHHHHHHHHHHhcc--cCCc
Q 015916           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL-----IGSLEGLVGYGAQWLVVSRK--IQPL  106 (398)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-----~g~~~~~ig~~~~~~~~~~~--~~~~  106 (398)
                      +.+. .++.++.+..+.+++.....++.. .+++.|++.||+|+|+...     ++.++.+++++++.......  ....
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            3344 455577775555654444445544 4789999999999987655     77777777777665532110  0112


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHH
Q 015916          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (398)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i  185 (398)
                      +.+.+.+..++.|++.+..++.....+.+.+|+ +||++.|+......+|+.+.+.+...+.+......+..++++..+.
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL  464 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            445556667778888887777788889999996 5999999999999999999998877766554444455555555555


Q ss_pred             HHhhhhcccccCC
Q 015916          186 CLGAIFFLRETTP  198 (398)
Q Consensus       186 ~~~~~~~l~~~p~  198 (398)
                      .++..++.++.++
T Consensus       465 ~~~~~~~~~~~~~  477 (491)
T 4aps_A          465 GIVLVFLSKRIQG  477 (491)
T ss_dssp             HHHHHHC------
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.83  E-value=1.1e-08  Score=100.40  Aligned_cols=142  Identities=11%  Similarity=0.064  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhH
Q 015916           50 ELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA  128 (398)
Q Consensus        50 ~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~  128 (398)
                      +.++......++.. ..++.|++.||+|+|+++.++.++.+++++...+.       ++.+.+.+..++.+++.+.....
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  332 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVG  332 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444443 36899999999999999998888887776655331       24455555555556555544455


Q ss_pred             HHHHHHHhhcc-CCcchHHHH-HhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh-hhcccccCC
Q 015916          129 VLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA-IFFLRETTP  198 (398)
Q Consensus       129 ~~~~~~~~Fp~-~RG~a~gi~-~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~~~p~  198 (398)
                      ....+.+.+|+ .||++.|+. ....++|+.+.|.+.+.+.+.......+.+..+..+++.+. .++.|+.++
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            66788999995 599999995 77788999999999887776444444444434343444333 444554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.19  E-value=9.8e-08  Score=91.58  Aligned_cols=131  Identities=11%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHH-HHHHHHHHHHHHhcccCCchHHHHHHHHHH
Q 015916           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE-GLVGYGAQWLVVSRKIQPLSYWQMCVFLCM  117 (398)
Q Consensus        40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~-~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l  117 (398)
                      +++++|++..+.+++.....++... .++.|++.||+|+|  +..+... ...+..........   ..+.+.+++..++
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  300 (375)
T 2gfp_A          226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VMNVWTLLVPAAL  300 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cccHHHHHHHHHH
Confidence            3556888888888876666677755 78999999999873  3333333 23232221111110   0245556666777


Q ss_pred             HhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHH
Q 015916          118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFL  175 (398)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~  175 (398)
                      .|++.+..+........+.+|++||++.|+......+|+.+.+.+.+.+.+...+...
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  358 (375)
T 2gfp_A          301 FFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLG  358 (375)
T ss_dssp             HHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence            7888887777778888899998899999999999999988888777766543333333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.17  E-value=9e-06  Score=81.48  Aligned_cols=105  Identities=7%  Similarity=-0.091  Sum_probs=71.2

Q ss_pred             hhhhhhhh----cccCc----hHHHHHHHHHHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 015916           65 GLLAGLAS----DRIPA----PIILLIGSLEGLVGYGAQWLVVSRK--IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI  134 (398)
Q Consensus        65 ~~~~G~l~----Dr~G~----r~~~~~g~~~~~ig~~~~~~~~~~~--~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~  134 (398)
                      +++.+++.    ||.|+    ++.+.+|.++.+++++++.+.....  ....+.+.+.+..++.|++.+.........+.
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666654    55543    4567778888777777654321000  00124555666677888888877777778888


Q ss_pred             Hhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916          135 RNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (398)
Q Consensus       135 ~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  169 (398)
                      +.+|+ +||+++|+.....++|+.+.+.+...+.+.
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99985 699999999999999999999998877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.51
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.99
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.69

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.6e-22  Score=196.88  Aligned_cols=287  Identities=15%  Similarity=0.083  Sum_probs=190.0

Q ss_pred             CcHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHH
Q 015916           12 GKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL   89 (398)
Q Consensus        12 ~~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (398)
                      .||.++...++...... ....+++..|.++ ++|+|.+|.+++.+...++..+ .++.|++.||+|||+++.++.++.+
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            36777766665544333 2356677777665 5899999999987777888765 7999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC
Q 015916           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (398)
Q Consensus        90 ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  168 (398)
                      ++.+++++....   ..+++.+++.|++.|++.+..+.+....+.+|+|+ +||++.|+...+.++|+.+.+.+......
T Consensus       101 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         101 AVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHhhccccchh---hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            998887653211   02466788899999999998888888999999985 59999999999999999888877665443


Q ss_pred             C-ChhHHH-HHHHHHHHHHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHH
Q 015916          169 D-DPAKFL-FMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (398)
Q Consensus       169 ~-~~~~~~-~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
                      . ..|++. ...+....+..++..++++++|++...                                            
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  213 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL--------------------------------------------  213 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC--------------------------------------------
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhccc--------------------------------------------
Confidence            1 122211 111111122222222222222221100                                            


Q ss_pred             HHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHH
Q 015916          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF  326 (398)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~  326 (398)
                                                  ++.++.+++.+   +      +  .    +++       .+++...+....+
T Consensus       214 ----------------------------~~~~~~~~~~~---~------~--~----~~~-------~~~~~~~~~~~~~  243 (447)
T d1pw4a_         214 ----------------------------PPIEEYKNDYP---D------D--Y----NEK-------AEQELTAKQIFMQ  243 (447)
T ss_dssp             ----------------------------CSCTTTCCC-----------------------------------CCTHHHHH
T ss_pred             ----------------------------chhhhhhhhcc---c------c--h----hhc-------cccccchhhHHHH
Confidence                                        00000000000   0      0  0    000       0001122345678


Q ss_pred             HHhccHhHHHHHHHHHhcccceeeeeechHHHHHHh-CCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916          327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKMV  396 (398)
Q Consensus       327 ~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~~-g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~~  396 (398)
                      +.++++.+|.+....++.......+.+..+.+.++. +.+  +.....++..+.+.+|+++.|+++||++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  316 (447)
T d1pw4a_         244 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN  316 (447)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc
Confidence            899999999999888887777767777777776654 555  3567889999999999999999999998764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.2e-13  Score=130.32  Aligned_cols=153  Identities=15%  Similarity=0.106  Sum_probs=95.1

Q ss_pred             CCCcHHHHHHHHHHHHHhcccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916           10 SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (398)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~g~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (398)
                      +++.|+..+..++.....+..  ++.+...+++++|+|.+|++++.+...++..+ +++.|++.||+|||++++++....
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~--~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   83 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAY--FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM   83 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            344565544444433333322  22333347888999999999987777777765 899999999999999999999888


Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc---cCCcchHHHHHhhhhhhHHHHHHHHHh
Q 015916           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSA  165 (398)
Q Consensus        89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~  165 (398)
                      .++...........   .......+.+.+.+.+.+....+.........+   +++..+.+......+.+..+.+.+...
T Consensus        84 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (417)
T d1pv7a_          84 LVMFAPFFIFIFGP---LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI  160 (417)
T ss_dssp             HHTHHHHHHHTHHH---HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh---hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccc
Confidence            88877776542110   011112234455555555444444444433332   246677777777777777777666655


Q ss_pred             Hc
Q 015916          166 LF  167 (398)
Q Consensus       166 ~~  167 (398)
                      +.
T Consensus       161 l~  162 (417)
T d1pv7a_         161 MF  162 (417)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=3.2e-10  Score=106.10  Aligned_cols=144  Identities=13%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhh
Q 015916           49 LELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT  127 (398)
Q Consensus        49 ~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~  127 (398)
                      ...+.......++.. ..++.+++.||+|+|+++.++.++.+++.+...+.       ++.+.+.+..++.|++.+...+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~  331 (417)
T d1pv7a_         259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLV  331 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------cccchhhHHHHHHHHHHHHHHH
Confidence            344444444444444 46899999999999999999999998888876643       4567777778888888888888


Q ss_pred             HHHHHHHHhhcc-CCcchHHHH-HhhhhhhHHHHHHHHHhHcCCChhH-HHHHHHHHHHHHHHhhhhcccccCCC
Q 015916          128 AVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIVPFVVCLGAIFFLRETTPA  199 (398)
Q Consensus       128 ~~~~~~~~~Fp~-~RG~a~gi~-~~~~glg~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~l~~~p~~  199 (398)
                      .....+.+.+|+ +||++.|+. ....++|..+.+.+.+.+.+..+++ .++..+++..+..++..+++|++.+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            888889999985 599999985 4567799999999988887653333 34455566666666677777655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=4.1e-08  Score=93.42  Aligned_cols=158  Identities=11%  Similarity=-0.040  Sum_probs=97.7

Q ss_pred             ccccccHHH-HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 015916           31 YTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (398)
Q Consensus        31 ~~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~  108 (398)
                      +....+.+. +++.++++..+.++......+.... .++.|++.||+++|+..........+..........  ....+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  343 (447)
T d1pw4a_         266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--NPAGNP  343 (447)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--CCTTCH
T ss_pred             hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh--cccccH
Confidence            334444454 4667899999998866666666654 789999999999876555544444333332222111  112345


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHH-HHHHHHhHcCCChhHHHHHHHHHHHHHH
Q 015916          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAI-FTDLCSALFADDPAKFLFMLAIVPFVVC  186 (398)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i-~~~l~~~~~~~~~~~~~~~~~~~~~~i~  186 (398)
                      +...+..++.|++.+...........+.+|++ ||++.|+......+++.+ .+.+.+.+.+..++...+++.....++.
T Consensus       344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  423 (447)
T d1pw4a_         344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  423 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            55556666677777666666677788999965 999999988777776555 4566666666544444333333333333


Q ss_pred             Hhhh
Q 015916          187 LGAI  190 (398)
Q Consensus       187 ~~~~  190 (398)
                      ++..
T Consensus       424 ~~~~  427 (447)
T d1pw4a_         424 VILL  427 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333