Citrus Sinensis ID: 015927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHEEEEEEcEEccccccccccccccccccccccccccccHHHHHHccccHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEEcccccHHHHHcccccccccccccccccccccEEEEEHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHEEEEEEEEEEEcccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mtiqssverkyrksprapllpqaqsqnhdnleaheagidgasfsgAVFNLSTTIVGAGIMALPATvkelglipGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLsgawlngvhhsgvteewfgqhwwttRFTLLLLTTLFVFlplisfrrvdslRYTSALSVGLAIVFVVITAGVAIVKtidgsismpcllpeiSKQASFWKLFTTFPVLVTAYIChhnihpienelkdptqiKSIVRTSITLCSTVYITTSFFGLllfgdrtldDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALrdthgiatknDRLASWLMISLAVSsstvavssDIYSIFNGVGG
mtiqssverkyrksprapllpqaqsQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPienelkdptQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVssstvavssdIYSIFNGVGG
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWttrftllllttlfvflplISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMIslavssstvavssDIYSIFNGVGG
*************************************IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNG***
*********************************************AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
****************APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
***************************************GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVG*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q28HE5448 Probable sodium-coupled n yes no 0.685 0.609 0.266 3e-21
Q3USY0453 Putative sodium-coupled n yes no 0.708 0.622 0.271 6e-20
P40074448 Vacuolar amino acid trans yes no 0.630 0.560 0.300 1e-19
Q5SPB1504 Sodium-coupled neutral am no no 0.796 0.628 0.245 2e-19
Q99624504 Sodium-coupled neutral am yes no 0.685 0.541 0.252 7e-19
Q9H2H9487 Sodium-coupled neutral am no no 0.889 0.726 0.236 1e-18
Q9JM15485 Sodium-coupled neutral am no no 0.706 0.579 0.249 2e-18
Q8K2P7485 Sodium-coupled neutral am no no 0.718 0.589 0.243 4e-18
Q6DEL1465 Putative sodium-coupled n no no 0.723 0.619 0.285 8e-18
Q9DCP2505 Sodium-coupled neutral am no no 0.678 0.534 0.248 9e-18
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function desciption
 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 154/330 (46%), Gaps = 57/330 (17%)

Query: 22  QAQSQNHDNLEAHE--AGID----------------GASFSGAVFNLSTTIVGAGIMALP 63
           QA   + + L+ H+  AG D                G SF  AVFNL   I+G+GI+ L 
Sbjct: 2   QASDSSINTLDGHQVSAGRDESTPLLANSPQRRSSGGTSFGFAVFNLMNAIMGSGILGLS 61

Query: 64  ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVC 123
             + + G++    ++++V  L   SI +++R    +   +Y  +   AFG +G+ L+   
Sbjct: 62  YAMAKTGILGFSALLLIVALLAAYSIHLLLRMCLLTAVTSYEDLGLYAFGRSGKVLVACT 121

Query: 124 IVVNNLGMLVVYMIIIGDVLSGA---WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV 180
           I++ N+G +  Y+ II   L  A   +L G           G+ W+    TLL++T++ +
Sbjct: 122 ILIQNVGAMSSYLFIIKSELPAAIASFLPGAQ---------GEPWYLDGRTLLIITSVCI 172

Query: 181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFW 240
            LPL    ++  L YTS+LS      F+V  A V ++K  +    +PC LP ++   +F 
Sbjct: 173 VLPLALLPKIGFLGYTSSLS----FFFMVYFAVVIVIKKWN----IPCPLPPLNHTVTFL 224

Query: 241 ----------KLFT-------TFPVLVTAYICHHNIHPIENELKDP--TQIKSIVRTSIT 281
                     KLF          P +  +++CH ++ PI  ELK P  ++++++    I 
Sbjct: 225 QAPNISECKPKLFDFSKESAFALPTMAFSFLCHTSVLPIYCELKSPSKSKMQNVANVGIA 284

Query: 282 LCSTVYITTSFFGLLLFGDRTLDDVLANFD 311
           L   +Y  ++ FG L F D    ++L  + 
Sbjct: 285 LSFLIYYISALFGYLTFYDNVKSELLQGYS 314
Probable sodium-dependent amino acid/proton antiporter.
Xenopus tropicalis (taxid: 8364)
>sp|Q3USY0|S38AB_MOUSE Putative sodium-coupled neutral amino acid transporter 11 OS=Mus musculus GN=Slc38a11 PE=2 SV=2 Back     alignment and function description
>sp|P40074|AVT6_YEAST Vacuolar amino acid transporter 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT6 PE=1 SV=1 Back     alignment and function description
>sp|Q5SPB1|S38A2_DANRE Sodium-coupled neutral amino acid transporter 2 OS=Danio rerio GN=slc38a2 PE=3 SV=1 Back     alignment and function description
>sp|Q99624|S38A3_HUMAN Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1 Back     alignment and function description
>sp|Q9H2H9|S38A1_HUMAN Sodium-coupled neutral amino acid transporter 1 OS=Homo sapiens GN=SLC38A1 PE=1 SV=1 Back     alignment and function description
>sp|Q9JM15|S38A1_RAT Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1 Back     alignment and function description
>sp|Q8K2P7|S38A1_MOUSE Sodium-coupled neutral amino acid transporter 1 OS=Mus musculus GN=Slc38a1 PE=1 SV=1 Back     alignment and function description
>sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1 Back     alignment and function description
>sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
449447087453 PREDICTED: sodium-coupled neutral amino 0.972 0.854 0.650 1e-158
224067156414 amino acid transporter [Populus trichoca 0.891 0.857 0.677 1e-152
255537952456 amino acid transporter, putative [Ricinu 0.984 0.859 0.623 1e-145
225458918449 PREDICTED: sodium-coupled neutral amino 0.974 0.864 0.643 1e-143
147818199468 hypothetical protein VITISV_034136 [Viti 0.974 0.829 0.613 1e-134
356554046453 PREDICTED: probable sodium-coupled neutr 0.949 0.834 0.591 1e-133
294463408456 unknown [Picea sitchensis] 0.982 0.857 0.547 1e-124
356573605 531 PREDICTED: sodium-coupled neutral amino 0.957 0.717 0.516 1e-121
302142154394 unnamed protein product [Vitis vinifera] 0.836 0.845 0.643 1e-120
255586905461 amino acid transporter, putative [Ricinu 0.972 0.839 0.514 1e-117
>gi|449447087|ref|XP_004141301.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Cucumis sativus] gi|449509262|ref|XP_004163538.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/449 (65%), Positives = 334/449 (74%), Gaps = 62/449 (13%)

Query: 1   MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIM 60
           MT+  S +RKYR+SP+  LLP+     +D+ E  EAG+DGASFSGAVFNLS+TIVGAGIM
Sbjct: 1   MTMLVSADRKYRRSPKKLLLPE----KYDHQEPVEAGLDGASFSGAVFNLSSTIVGAGIM 56

Query: 61  ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALL 120
           ALPA VK+LGLIPGLI+I+L   LTE SID I++FSRASKS TY+G V ++FG AGR LL
Sbjct: 57  ALPAVVKQLGLIPGLILIMLGSTLTELSIDFILKFSRASKSVTYAGAVGESFGNAGRTLL 116

Query: 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV 180
           QVCIVVNNLGMLVVYMIIIGDVLSG   N +HH GV EEWFGQHWWT+R +L+LLTTLF+
Sbjct: 117 QVCIVVNNLGMLVVYMIIIGDVLSGTSANNIHHKGVMEEWFGQHWWTSRLSLMLLTTLFI 176

Query: 181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFW 240
           F PLISF+RVDSLRYTSALSV LAIVFV ITAGVAI K +DGSI MP L+P++  QASFW
Sbjct: 177 FAPLISFKRVDSLRYTSALSVALAIVFVAITAGVAIAKLMDGSIVMPRLMPKVVDQASFW 236

Query: 241 KLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGD 300
           +LFTT PVLVTAYICHHN+HPIENELKDPTQ+KSIVRTS+T+CSTVYI TSFFG LLFGD
Sbjct: 237 QLFTTVPVLVTAYICHHNVHPIENELKDPTQMKSIVRTSLTICSTVYIATSFFGFLLFGD 296

Query: 301 RTL-------------------DDVLA--------------------------------- 308
           +TL                   DDV+                                  
Sbjct: 297 QTLDDVLANFDGDLGLPFSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPYAIPI 356

Query: 309 NFD------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIA 362
            FD      +T ALM FIF+GANFVPSIWDAFQ TGATAA+SVGFIFPAA+ LRDT GIA
Sbjct: 357 TFDNRRFFLITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALILRDTCGIA 416

Query: 363 TKNDRLASWLMISLAVSSSTVAVSSDIYS 391
           +K DRL +W+M  LAV SS VA+S DIYS
Sbjct: 417 SKKDRLIAWIMFLLAVFSSIVAISCDIYS 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224067156|ref|XP_002302383.1| amino acid transporter [Populus trichocarpa] gi|222844109|gb|EEE81656.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537952|ref|XP_002510041.1| amino acid transporter, putative [Ricinus communis] gi|223550742|gb|EEF52228.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225458918|ref|XP_002285488.1| PREDICTED: sodium-coupled neutral amino acid transporter 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147818199|emb|CAN60404.1| hypothetical protein VITISV_034136 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554046|ref|XP_003545360.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] Back     alignment and taxonomy information
>gi|294463408|gb|ADE77235.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356573605|ref|XP_003554948.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|302142154|emb|CBI19357.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586905|ref|XP_002534057.1| amino acid transporter, putative [Ricinus communis] gi|223525920|gb|EEF28328.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2102926460 AT3G30390 [Arabidopsis thalian 0.839 0.726 0.511 4e-90
TAIR|locus:2166615456 AT5G38820 "AT5G38820" [Arabido 0.831 0.725 0.498 3.3e-86
TAIR|locus:2078381435 AT3G56200 [Arabidopsis thalian 0.736 0.673 0.412 9.5e-78
TAIR|locus:2063068440 AT2G40420 "AT2G40420" [Arabido 0.743 0.672 0.432 3.2e-77
TAIR|locus:2198968489 AT1G80510 [Arabidopsis thalian 0.713 0.580 0.414 1.8e-72
UNIPROTKB|F1SRV0456 SLC38A6 "Uncharacterized prote 0.663 0.578 0.264 1.3e-19
UNIPROTKB|I3LB54 1053 SLC38A10 "Uncharacterized prot 0.683 0.258 0.241 1.3e-18
UNIPROTKB|E1BXH7466 SLC38A6 "Uncharacterized prote 0.683 0.583 0.249 2.6e-18
ZFIN|ZDB-GENE-050417-122448 slc38a11 "solute carrier famil 0.675 0.600 0.257 5.4e-18
RGD|1310330457 Slc38a6 "solute carrier family 0.675 0.588 0.248 6e-18
TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 176/344 (51%), Positives = 243/344 (70%)

Query:    17 APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLI 76
             APLLP+     H +  AH+   +GASFSGAVFNL+TTI+GAGIMALPAT+K LGL  G+ 
Sbjct:    24 APLLPEC----HGDEVAHDE-FNGASFSGAVFNLATTIIGAGIMALPATMKILGLGLGIT 78

Query:    77 MIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYM 136
             MIV++ +LT++SI+ ++RFS+A K+ +Y G++  +FG  GR LLQV ++VNN+G+L+VYM
Sbjct:    79 MIVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRILLQVAVLVNNIGVLIVYM 138

Query:   137 IIIGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYT 196
             IIIGDVL+G   +G+HH GV E WFG HWW                    F+R+DSL++T
Sbjct:   139 IIIGDVLAGKTEDGIHHFGVLEGWFGHHWWNGRAAILLITTLGVFAPLACFKRIDSLKFT 198

Query:   197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICH 256
             SALSV LA+VF++ITAG++I+K I G ++MP LLP+++   SFW LFT  PVLVTA+ICH
Sbjct:   199 SALSVALAVVFLIITAGISIMKLISGGVAMPRLLPDVTDLTSFWNLFTVVPVLVTAFICH 258

Query:   257 HNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAAL 316
             +N+H I+NEL+DP+QI+ +VR+++ LCS+VYI TS FG LLFGD TLDDVLANFD    +
Sbjct:   259 YNVHSIQNELEDPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDVLANFDTDLGI 318

Query:   317 -MGFIF---VGANFVPSIWDAFQFTGATAAVSV-GFIFPAAIAL 355
               G I    V  ++   +   F        +++ G +FP+A +L
Sbjct:   319 PFGSILNDAVRVSYALHLMLVFPIVFYPLRINIDGLLFPSARSL 362
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRV0 SLC38A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LB54 SLC38A10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXH7 SLC38A6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-122 slc38a11 "solute carrier family 38, member 11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310330 Slc38a6 "solute carrier family 38, member 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-32
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-24
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 1e-20
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 2e-07
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 8e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  125 bits (315), Expect = 4e-32
 Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 24/291 (8%)

Query: 39  DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMI------ 92
              S   AVFNL   I+GAG+++LP   K+LG IPGLI++V+VG ++  ++ ++      
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 93  MRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVH 152
           +   +  +  +Y  +    FG  G+ L+   I+VN  G+ + Y+I  GD L   + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 153 HSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA 212
                                ++    +F+PL     + +L   S ++   A+  + I  
Sbjct: 121 T------------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVA---AVSSLYIVI 165

Query: 213 GVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP--- 269
            V  V  +    +               +LF    ++V A+  H  + PI+N +K P   
Sbjct: 166 LVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF 225

Query: 270 TQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDVTAALMGFI 320
             +  ++ T+I + + +YI     G L FG+    ++L N   +  L+   
Sbjct: 226 KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIA 276

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK10483414 tryptophan permease; Provisional 99.92
PRK09664415 tryptophan permease TnaB; Provisional 99.92
PRK15132403 tyrosine transporter TyrP; Provisional 99.91
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.89
PRK13629443 threonine/serine transporter TdcC; Provisional 99.84
TIGR00814397 stp serine transporter. The HAAAP family includes 99.8
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.57
PRK10655438 potE putrescine transporter; Provisional 99.54
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.52
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.51
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.49
PRK10644445 arginine:agmatin antiporter; Provisional 99.48
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.47
TIGR00911 501 2A0308 L-type amino acid transporter. 99.46
PRK10249458 phenylalanine transporter; Provisional 99.45
TIGR00909429 2A0306 amino acid transporter. 99.44
PRK15049 499 L-asparagine permease; Provisional 99.43
PRK11021410 putative transporter; Provisional 99.4
PRK10746 461 putative transport protein YifK; Provisional 99.38
PF03845320 Spore_permease: Spore germination protein; InterPr 99.38
TIGR00930 953 2a30 K-Cl cotransporter. 99.38
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.36
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.36
PRK10238456 aromatic amino acid transporter; Provisional 99.33
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.33
PRK10580457 proY putative proline-specific permease; Provision 99.33
PRK10836 489 lysine transporter; Provisional 99.31
PRK11387 471 S-methylmethionine transporter; Provisional 99.31
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.29
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.28
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.28
TIGR00913 478 2A0310 amino acid permease (yeast). 99.26
KOG3832319 consensus Predicted amino acid transporter [Genera 99.15
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.11
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.06
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.02
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 98.91
PRK15238 496 inner membrane transporter YjeM; Provisional 98.72
TIGR00907 482 2A0304 amino acid permease (GABA permease). 98.71
COG3949349 Uncharacterized membrane protein [Function unknown 98.71
KOG1286 554 consensus Amino acid transporters [Amino acid tran 98.63
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.56
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.53
COG0833 541 LysP Amino acid transporters [Amino acid transport 98.43
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.32
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.28
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 98.26
PRK11375484 allantoin permease; Provisional 98.03
COG1457442 CodB Purine-cytosine permease and related proteins 97.8
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.7
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.7
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.66
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.5
PRK12488 549 acetate permease; Provisional 97.49
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.49
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.39
PRK11017404 codB cytosine permease; Provisional 97.39
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.33
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.26
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.03
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 96.97
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.63
TIGR00813407 sss transporter, SSS family. have different number 96.63
PRK15015 701 carbon starvation protein A; Provisional 96.49
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.36
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.32
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.32
PRK09395 551 actP acetate permease; Provisional 95.85
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 95.67
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 95.45
PRK00701439 manganese transport protein MntH; Reviewed 95.44
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 95.39
PRK10484 523 putative transporter; Provisional 95.36
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 95.01
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 93.99
KOG2466 572 consensus Uridine permease/thiamine transporter/al 93.87
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 93.22
PRK15419502 proline:sodium symporter PutP; Provisional 90.39
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 90.26
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 90.18
COG4147 529 DhlC Predicted symporter [General function predict 88.9
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 86.44
TIGR00906557 2A0303 cationic amino acid transport permease. 84.04
TIGR00909429 2A0306 amino acid transporter. 81.5
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-50  Score=395.13  Aligned_cols=345  Identities=22%  Similarity=0.363  Sum_probs=276.9

Q ss_pred             CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 015927           39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA  118 (398)
Q Consensus        39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~  118 (398)
                      .+++..++++++.|+++|+|+|++|++|+++||++|++++++++.++.||.+++.+++++.+..+|+|++++++||++++
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~  137 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSY  137 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhH
Q 015927          119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA  198 (398)
Q Consensus       119 i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~  198 (398)
                      ++++.+.++++|.|++|+++.+|.++..+++...     .++.+.. ...|..+ .++.+++++|++++|+++.++++|.
T Consensus       138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~~-~~~r~~~-~~i~~~i~lPLs~~r~i~~L~~~S~  210 (467)
T PTZ00206        138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQK-SGNRLLT-SLMWLCFMLPLVIPRHIDSLRYVST  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhhc-cCcEEee-eehhhhHhhhcccccchHHHHHHHH
Confidence            9999999999999999999999999777653211     1122111 1123222 3334568899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCC---c----cccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-
Q 015927          199 LSVGLAIVFVVITAGVAIVKTIDGSISMP---C----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-  270 (398)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-  270 (398)
                      ++. .++++.++.+.  .+...++..+..   +    ..++....+...+.+.++|+++|||.||.++|++++|||+|+ 
T Consensus       211 i~~-~~i~~~vi~iv--i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~  287 (467)
T PTZ00206        211 IAV-SFMVYLVIVIV--VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV  287 (467)
T ss_pred             HHH-HHHHHHHhhhh--hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch
Confidence            998 44444433322  122222211100   0    001111122234578899999999999999999999999866 


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcc-h-------------------------------------
Q 015927          271 -QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANF-D-------------------------------------  311 (398)
Q Consensus       271 -~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~-------------------------------------  311 (398)
                       |+.++...++.+++++|..+|++||++||+++++|++.|+ |                                     
T Consensus       288 ~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~  367 (467)
T PTZ00206        288 GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIG  367 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhC
Confidence             8889999999999999999999999999999999999999 4                                     


Q ss_pred             -------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhc---CCCCchhhHHHHHHHHH
Q 015927          312 -------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDT---HGIATKNDRLASWLMIS  375 (398)
Q Consensus       312 -------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~---~~~~~~~~~~~~~~~~~  375 (398)
                                   .+..+.+.+.++|+++|+++.+++++||++++.++|++|+++|++..   +++.++++++.++.+++
T Consensus       368 ~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli  447 (467)
T PTZ00206        368 WDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLI  447 (467)
T ss_pred             CCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHH
Confidence                         12234555678999999999999999999999999999999999842   22233445678999999


Q ss_pred             HHHHHHHHhhHHHHHHhh
Q 015927          376 LAVSSSTVAVSSDIYSIF  393 (398)
Q Consensus       376 ~g~~~~~~~~~~~i~~~~  393 (398)
                      +|++..+.|||+++++.+
T Consensus       448 ~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        448 TGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHhheEEecchhHhhHHh
Confidence            999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.69
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.51
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.22
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.0
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.32
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 96.01
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 93.58
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.69  E-value=5e-14  Score=137.29  Aligned_cols=244  Identities=14%  Similarity=0.107  Sum_probs=161.7

Q ss_pred             cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcCh
Q 015927           36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGG  114 (398)
Q Consensus        36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~  114 (398)
                      +++|+.+.++.+...+++++|+|++.+|....+.|.. +++..++.++........+.|...+.+. -...+..++.+||
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~   83 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP   83 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCC
Confidence            4578899999999999999999999999998888864 7888888888888888888888877644 4888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (398)
Q Consensus       115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~  194 (398)
                      +...+......+........+....++.+...+++          . +.++   ....+. ....++.-....+..+...
T Consensus        84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~---~~~~~~-~~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------L-KDPW---VLTITC-VVVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------G-GSHH---HHHHHH-HHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------c-cccH---HHHHHH-HHHHHHHHHHHHhchHHHH
Confidence            99999999888887777777777777777544331          0 0000   111111 1111222222233444444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc--cchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-c
Q 015927          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q  271 (398)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~  271 (398)
                      .+..+.....++..++   +........+  .....+.++  +..++.++..++....|+|.+........+|+|||+ +
T Consensus       149 ~~~~~~~~~~i~~~~~---~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~  223 (445)
T 3l1l_A          149 RVQAVATVLALIPIVG---IAVFGWFWFR--GETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRN  223 (445)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHTTSTTCC--CCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHhC--hhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccc
Confidence            4444333221111111   1111111111  111111111  122356788899999999999999999999999996 7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 015927          272 IKSIVRTSITLCSTVYITTSFFGLLLFGD  300 (398)
Q Consensus       272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~  300 (398)
                      .+|++..+.....++|+..........+.
T Consensus       224 ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          224 VPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            89999999999999999998877766653
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 87.92
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.92  E-value=9.4  Score=34.59  Aligned_cols=103  Identities=21%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             CCCcHHHHHHHHHHHHHhhhh-hhHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcC
Q 015927           39 DGASFSGAVFNLSTTIVGAGI-MALPATVKELGL----IPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG  113 (398)
Q Consensus        39 ~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~----~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G  113 (398)
                      +=.+..+-++..++..+|.|= .-.||...+-|-    ++=.+++++++.=..+-=..+.+..++.+...+..++....+
T Consensus         3 ~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~   82 (509)
T d2a65a1           3 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWR   82 (509)
T ss_dssp             CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSC
T ss_pred             CCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhcc
Confidence            346778889999999999974 448999876653    222333333333333333334444455677888888887776


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015927          114 GAGRALLQVCIVVNNLGMLVVYMIIIGD  141 (398)
Q Consensus       114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~  141 (398)
                      .+....+.....+..+..++.|..+.+-
T Consensus        83 ~~~~~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          83 NRFAKILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             SHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            5444444444445555555555555444