Citrus Sinensis ID: 015935

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPSIILRFLFIWSGNQA
cccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHccccccccccccEEEEEcccccccccEEEEEEEEEcccccccccccccccEEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHccEEccccccccccccccccccccccEEEEEEEcccEEEEEEccccccEEEEEEEccEEEEEEHHccccccc
ccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEcccccEEEEcccHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHccccccEEEEHccEEEEEcccccccccEEcccEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccccHHHccccHHEEEEEccccEEEEEEccccccEEEEEEEcccHHHHEEHEHccccc
MAISSQTLDILgerqagqdvrtqNVMACQAVANIVKsslgpvgldkmlvddigdvtitnDGATILKMLEVEHPAAKVLVELAElqdrevgdgtTSVVIVAAELLKRANDLvrnkihptsiiSGYRLAMREACKYVNEKLAVKVEKLGKdslvncaktsmsskliggdsdFFANLVVEAVQAVKMTnqrgevkypikGINILKahgksardsyFLNGYALNAFRaaqgmplrvapAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGatmvstfadmegeetfdssllgsadevveervadddvimiKGTKTTSAYIILGKVPSIILRFLFIWSGNQA
maissqtldilgerqagqdvRTQNVMACQAVANIvksslgpvgLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAElqdrevgdgTTSVVIVAAELLKrandlvrnkihptsiisgyrLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKmtnqrgevkypikGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLgvqvlvtdprelekIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAkatgatmvstfADMEGEETFDSSLLGSADEVVEErvadddvimikgtkttsayiilgkvPSIILRFLFIWSGNQA
MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSadevveervadddvIMIKGTKTTSAYIILGKVPSIILRFLFIWSGNQA
*******************VRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDP****************RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFA****************DEVVEERVADDDVIMIKGTKTTSAYIILGKVPSIILRFLFIWS****
******T*************RTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPSIILRFLFIWS****
MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPSIILRFLFIWSGNQA
*****QTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPSIILRFLFIWSGN**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPSIILRFLFIWSGNQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
P28769 545 T-complex protein 1 subun yes no 0.957 0.699 0.878 0.0
Q9XT06 557 T-complex protein 1 subun yes no 0.934 0.667 0.686 1e-151
P17987 556 T-complex protein 1 subun yes no 0.934 0.669 0.680 1e-151
Q32L40 556 T-complex protein 1 subun yes no 0.934 0.669 0.680 1e-151
P11983 556 T-complex protein 1 subun yes no 0.934 0.669 0.678 1e-151
Q9W790 559 T-complex protein 1 subun N/A no 0.952 0.677 0.678 1e-150
P18279 556 T-complex protein 1 subun yes no 0.934 0.669 0.680 1e-150
Q4R5G2 556 T-complex protein 1 subun N/A no 0.934 0.669 0.678 1e-150
P28480 556 T-complex protein 1 subun yes no 0.934 0.669 0.678 1e-149
P12613 557 T-complex protein 1 subun yes no 0.964 0.689 0.638 1e-146
>sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/388 (87%), Positives = 364/388 (93%), Gaps = 7/388 (1%)

Query: 1   MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITND 60
           M+IS+Q  DI G+RQ+GQDVRTQNVMACQAV+NIVK+SLGPVGLDKMLVDDIGDVTITND
Sbjct: 1   MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60

Query: 61  GATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
           GATIL+MLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI
Sbjct: 61  GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120

Query: 121 ISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQ 180
           ISGYRLAMRE+CKY+ EKL  KVEKLGK  L+NCAKTSMSSKLI GDSDFFANLVVEAV 
Sbjct: 121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVL 180

Query: 181 AVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACL 240
           +VKMTNQRGE+KYPIKGINILKAHG+SARDSY LNGYALN  RAAQGMPLRV+PAKIACL
Sbjct: 181 SVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACL 240

Query: 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL 300
           DFNLQKTKMQLGVQV+V DPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL
Sbjct: 241 DFNLQKTKMQLGVQVVVNDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL 300

Query: 301 KYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVA 360
           KYFVEAGAIAVRRVRKEDMRH+AKATGAT+V+TFADMEGEETFD + LGSADEVVEER+A
Sbjct: 301 KYFVEAGAIAVRRVRKEDMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIA 360

Query: 361 DDDVIMIKGTKTTSAYIILGKVPSIILR 388
           DDDVI+IKGTKT+SA        S+ILR
Sbjct: 361 DDDVILIKGTKTSSAV-------SLILR 381
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9XT06|TCPA_MONDO T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q32L40|TCPA_BOVIN T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=1 SV=1 Back     alignment and function description
>sp|P11983|TCPA_MOUSE T-complex protein 1 subunit alpha OS=Mus musculus GN=Tcp1 PE=1 SV=3 Back     alignment and function description
>sp|Q9W790|TCPA_PALPA T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P18279|TCPA_CRIGR T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5G2|TCPA_MACFA T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P28480|TCPA_RAT T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1 Back     alignment and function description
>sp|P12613|TCPA_DROME T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
255567297 546 chaperonin containing t-complex protein 0.957 0.697 0.914 0.0
24371053 546 t-complex polypeptide 1 [Bruguiera sexan 0.957 0.697 0.907 0.0
359489326 546 PREDICTED: T-complex protein 1 subunit a 0.957 0.697 0.904 0.0
302399081 550 TCP domain class transcription factor [M 0.957 0.692 0.904 0.0
449442275 545 PREDICTED: T-complex protein 1 subunit a 0.957 0.699 0.896 0.0
357519247 544 T-complex protein 1 subunit alpha [Medic 0.957 0.700 0.896 0.0
356512570 545 PREDICTED: T-complex protein 1 subunit a 0.952 0.695 0.912 0.0
356525315 545 PREDICTED: T-complex protein 1 subunit a 0.952 0.695 0.912 0.0
224136984 546 predicted protein [Populus trichocarpa] 0.942 0.686 0.912 0.0
115459800 545 Os04g0551800 [Oryza sativa Japonica Grou 0.957 0.699 0.881 0.0
>gi|255567297|ref|XP_002524629.1| chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis] gi|223536098|gb|EEF37754.1| chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/388 (91%), Positives = 368/388 (94%), Gaps = 7/388 (1%)

Query: 1   MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITND 60
           MAIS+QT DILGERQ+GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITND
Sbjct: 1   MAISAQTPDILGERQSGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITND 60

Query: 61  GATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
           GATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI
Sbjct: 61  GATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120

Query: 121 ISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQ 180
           ISGYRLAMREACKYV+EKLAVKVEKLGKDSLVNCAKTSMSSKLI GDSDFFANLVV+AVQ
Sbjct: 121 ISGYRLAMREACKYVDEKLAVKVEKLGKDSLVNCAKTSMSSKLIAGDSDFFANLVVDAVQ 180

Query: 181 AVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACL 240
           AVKMTN RGE+KYPIK INILKAHG+SA+DSY LNGYALN  RAAQGMP RVAPAKIACL
Sbjct: 181 AVKMTNARGEIKYPIKSINILKAHGQSAKDSYLLNGYALNTGRAAQGMPTRVAPAKIACL 240

Query: 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL 300
           DFNLQKTKMQLGVQVLVTDPRELEKIRQRE DMTKERIEKLLKAGANV+LTTKGIDDMAL
Sbjct: 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREVDMTKERIEKLLKAGANVVLTTKGIDDMAL 300

Query: 301 KYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVA 360
           KYFVEAGAIAVRRVRKEDMRH+AKATG TMVSTFADMEG+ETFD SLLG ADEVVEER+A
Sbjct: 301 KYFVEAGAIAVRRVRKEDMRHVAKATGGTMVSTFADMEGDETFDPSLLGYADEVVEERIA 360

Query: 361 DDDVIMIKGTKTTSAYIILGKVPSIILR 388
           DDDVIMIKGTK+TSA        S+ILR
Sbjct: 361 DDDVIMIKGTKSTSAV-------SLILR 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|24371053|dbj|BAC22124.1| t-complex polypeptide 1 [Bruguiera sexangula] Back     alignment and taxonomy information
>gi|359489326|ref|XP_002276924.2| PREDICTED: T-complex protein 1 subunit alpha-like [Vitis vinifera] gi|297734570|emb|CBI16621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302399081|gb|ADL36835.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449442275|ref|XP_004138907.1| PREDICTED: T-complex protein 1 subunit alpha-like [Cucumis sativus] gi|449506278|ref|XP_004162702.1| PREDICTED: T-complex protein 1 subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519247|ref|XP_003629912.1| T-complex protein 1 subunit alpha [Medicago truncatula] gi|355523934|gb|AET04388.1| T-complex protein 1 subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512570|ref|XP_003524991.1| PREDICTED: T-complex protein 1 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356525315|ref|XP_003531270.1| PREDICTED: T-complex protein 1 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|224136984|ref|XP_002326994.1| predicted protein [Populus trichocarpa] gi|222835309|gb|EEE73744.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115459800|ref|NP_001053500.1| Os04g0551800 [Oryza sativa Japonica Group] gi|38345468|emb|CAE01686.2| OSJNBa0010H02.6 [Oryza sativa Japonica Group] gi|113565071|dbj|BAF15414.1| Os04g0551800 [Oryza sativa Japonica Group] gi|215768326|dbj|BAH00555.1| unnamed protein product [Oryza sativa Japonica Group] gi|222629326|gb|EEE61458.1| hypothetical protein OsJ_15705 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2087605 545 TCP-1 "T-complex protein 1 alp 0.952 0.695 0.854 4.2e-166
UNIPROTKB|G5E531 556 TCP1 "T-complex protein 1 subu 0.934 0.669 0.659 8.4e-129
UNIPROTKB|Q32L40 556 TCP1 "T-complex protein 1 subu 0.934 0.669 0.659 8.4e-129
UNIPROTKB|E7ERF2433 TCP1 "T-complex protein 1 subu 0.934 0.859 0.659 1.1e-128
UNIPROTKB|P17987 556 TCP1 "T-complex protein 1 subu 0.934 0.669 0.659 1.1e-128
UNIPROTKB|F1SB63 556 TCP1 "T-complex protein 1 subu 0.934 0.669 0.659 1.4e-128
MGI|MGI:98535 556 Tcp1 "t-complex protein 1" [Mu 0.934 0.669 0.656 2.8e-128
UNIPROTKB|E2R0L9 556 TCP1 "T-complex protein 1 subu 0.934 0.669 0.656 4.6e-128
RGD|3832 556 Tcp1 "t-complex 1" [Rattus nor 0.934 0.669 0.656 2e-127
ZFIN|ZDB-GENE-990714-24 558 tcp1 "t-complex polypeptide 1" 0.952 0.679 0.642 5.3e-127
TAIR|locus:2087605 TCP-1 "T-complex protein 1 alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
 Identities = 324/379 (85%), Positives = 347/379 (91%)

Query:     1 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITND 60
             M+IS+Q  DI G+RQ+GQDVRTQNVMACQAV+NIVK+SLGPVGLDKMLVDDIGDVTITND
Sbjct:     1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60

Query:    61 GATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
             GATIL+MLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI
Sbjct:    61 GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120

Query:   121 ISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQ 180
             ISGYRLAMRE+CKY+ EKL  KVEKLGK  L+NCAKTSMSSKLI GDSDFFANLVVEAV 
Sbjct:   121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVL 180

Query:   181 AVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACL 240
             +VKMTNQRGE+KYPIKGINILKAHG+SARDSY LNGYALN  RAAQGMPLRV+PAKIACL
Sbjct:   181 SVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACL 240

Query:   241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL 300
             DFNLQKTKMQLGVQV+V DPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL
Sbjct:   241 DFNLQKTKMQLGVQVVVNDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL 300

Query:   301 KYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXX 360
             KYFVEAGAIAVRRVRKEDMRH+AKATGAT+V+TFADMEGEETFD + LGS          
Sbjct:   301 KYFVEAGAIAVRRVRKEDMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIA 360

Query:   361 XXXXIMIKGTKTTSAYIIL 379
                 I+IKGTKT+SA  ++
Sbjct:   361 DDDVILIKGTKTSSAVSLI 379
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
UNIPROTKB|G5E531 TCP1 "T-complex protein 1 subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32L40 TCP1 "T-complex protein 1 subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E7ERF2 TCP1 "T-complex protein 1 subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P17987 TCP1 "T-complex protein 1 subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SB63 TCP1 "T-complex protein 1 subunit alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:98535 Tcp1 "t-complex protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0L9 TCP1 "T-complex protein 1 subunit alpha" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|3832 Tcp1 "t-complex 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990714-24 tcp1 "t-complex polypeptide 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P18279TCPA_CRIGRNo assigned EC number0.68090.93460.6690yesno
P41988TCPA_CAEELNo assigned EC number0.64040.93710.6794yesno
Q55BM4TCPA_DICDINo assigned EC number0.62330.94720.6879yesno
O94501TCPA_SCHPONo assigned EC number0.64550.94970.6798yesno
Q32L40TCPA_BOVINNo assigned EC number0.68090.93460.6690yesno
P11983TCPA_MOUSENo assigned EC number0.67820.93460.6690yesno
P12612TCPA_YEASTNo assigned EC number0.62960.94220.6708yesno
P12613TCPA_DROMENo assigned EC number0.63800.96480.6894yesno
P17987TCPA_HUMANNo assigned EC number0.68090.93460.6690yesno
P28480TCPA_RATNo assigned EC number0.67820.93460.6690yesno
P28769TCPA_ARATHNo assigned EC number0.87880.95720.6990yesno
Q9XT06TCPA_MONDONo assigned EC number0.68630.93460.6678yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 0.0
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 0.0
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 1e-121
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 1e-113
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 1e-104
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-102
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 5e-97
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-83
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 6e-79
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 5e-73
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 3e-70
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 5e-70
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-69
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-66
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 8e-66
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 5e-65
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 8e-62
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 1e-58
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 3e-55
cd03341 472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 4e-54
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 8e-45
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 8e-44
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 3e-40
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 4e-12
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 2e-07
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-07
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 2e-07
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 8e-07
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-06
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 3e-06
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 9e-06
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-05
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 2e-05
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 1e-04
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information 
 Score =  693 bits (1790), Expect = 0.0
 Identities = 284/377 (75%), Positives = 334/377 (88%), Gaps = 7/377 (1%)

Query: 12  GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVE 71
           GER +GQDVRTQNV A  A+ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVE
Sbjct: 1   GERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 60

Query: 72  HPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREA 131
           HPAAK+LVELA+LQD+EVGDGTTSVVI+AAELLKRAN+LV+ KIHPT+IISGYRLA +EA
Sbjct: 61  HPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEA 120

Query: 132 CKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEV 191
            KY+ E L++ V+ LGK+SL+N AKTSMSSK+IG DSDFFAN+VV+A+ AVK TN++G+ 
Sbjct: 121 VKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKT 180

Query: 192 KYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251
           KYPIK +NILKAHGKSA++SY +NGYALN  RA+QGMP RV  AKIACLDFNLQKTKM+L
Sbjct: 181 KYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240

Query: 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV 311
           GVQV+VTDP +LEKIRQRE+D+TKERI+K+L AGANV+LTT GIDDM LKYFVEAGA+AV
Sbjct: 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAV 300

Query: 312 RRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK 371
           RRV+KED+R IAKATGAT+VST A++EGEETFD S LG A+EVV+ER+ DD++I+IKGTK
Sbjct: 301 RRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTK 360

Query: 372 TTSAYIILGKVPSIILR 388
             S+        SIILR
Sbjct: 361 KRSS-------ASIILR 370

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
KOG0358 534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0364 527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0359 520 consensus Chaperonin complex component, TCP-1 zeta 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
KOG0357 400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 99.96
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.91
COG1433121 Uncharacterized conserved protein [Function unknow 81.38
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information 
Probab=100.00  E-value=1e-76  Score=611.68  Aligned_cols=372  Identities=75%  Similarity=1.095  Sum_probs=352.6

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935           13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG   92 (398)
Q Consensus        13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG   92 (398)
                      ++..|.+++..|++||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus         2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG   81 (527)
T cd03335           2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG   81 (527)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935           93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA  172 (398)
Q Consensus        93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls  172 (398)
                      |||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++.++++++..+++.|.++|+|+++||+++.+.+.|+
T Consensus        82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls  161 (527)
T cd03335          82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA  161 (527)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999623888876678999999999999999998899999


Q ss_pred             HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccc
Q 015935          173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG  252 (398)
Q Consensus       173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~  252 (398)
                      +++++|+..++..+.+|...+++++|++++++|+++.+|++++|++|++++.+++||+.++||||++++++|++++++.+
T Consensus       162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~  241 (527)
T cd03335         162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLG  241 (527)
T ss_pred             HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccc
Confidence            99999999985323335446788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEcc
Q 015935          253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS  332 (398)
Q Consensus       253 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~  332 (398)
                      +++.++++++++.+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||++++
T Consensus       242 ~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~  321 (527)
T cd03335         242 VQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVS  321 (527)
T ss_pred             eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935          333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS  384 (398)
Q Consensus       333 ~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~  384 (398)
                      ++.+++..+++++.++|+|+.|+++++++++|++|+||+.+.+|||++||++
T Consensus       322 ~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t  373 (527)
T cd03335         322 TLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGAN  373 (527)
T ss_pred             ChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCc
Confidence            9987754455677789999999999999999999999999999999999998

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG1433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-144
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-136
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 1e-68
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 4e-68
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-65
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 3e-64
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 4e-64
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 8e-64
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 9e-64
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-63
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-63
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-62
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 5e-59
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 7e-59
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 8e-59
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 2e-58
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-50
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 2e-50
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-50
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-48
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-47
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-46
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-45
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-41
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-41
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-40
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-40
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-34
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-30
3iyg_Q 512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-29
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-28
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 4e-22
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 6e-20
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 5e-11
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 5e-08
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 8e-08
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 8e-06
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 8e-06
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 8e-06
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 8e-06
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 9e-06
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 9e-06
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 9e-06
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-05
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 8e-05
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 8e-05
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 8e-05
1oel_A 547 Conformational Variability In The Refined Structure 8e-05
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 9e-05
1ss8_A 524 Groel Length = 524 9e-05
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 9e-05
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 2e-04
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/371 (66%), Positives = 307/371 (82%), Gaps = 1/371 (0%)
Query: 10  ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLE 69
           + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LE
Sbjct: 1   VFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLE 60
Query: 70  VEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMR 129
           VEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +
Sbjct: 61  VEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACK 120
Query: 130 EACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRG 189
           EA +Y++E L +  ++LG+D L+N AKTSMSSK+IG + DFFANLVV+AV A+K T+ RG
Sbjct: 121 EAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 180
Query: 190 EVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249
           + +YP+  IN+LKAHG+S  +S  +NGYALN    +QGMP R+  AKIACLDF+LQKTKM
Sbjct: 181 QPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAI 309
           +LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300
Query: 310 AVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKG 369
           AVRRV K D++ IAKA+GAT++ST A++EGEETF++S+LG               I+IK 
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKN 360
Query: 370 TKT-TSAYIIL 379
           TK  TSA +IL
Sbjct: 361 TKARTSASVIL 371
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-180
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 1e-174
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-174
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-174
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 1e-173
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 1e-171
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-170
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-169
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-167
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-167
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-166
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-166
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-165
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-162
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-162
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-161
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-159
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-159
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-158
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-158
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-156
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 5e-59
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 7e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-05
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 6e-05
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-04
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 1e-04
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
 Score =  522 bits (1347), Expect = 0.0
 Identities = 252/379 (66%), Positives = 321/379 (84%), Gaps = 7/379 (1%)

Query: 10  ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLE 69
           + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LE
Sbjct: 1   VFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLE 60

Query: 70  VEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMR 129
           VEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +
Sbjct: 61  VEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACK 120

Query: 130 EACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRG 189
           EA +Y++E L +  ++LG+D L+N AKTSMSSK+IG + DFFANLVV+AV A+K T+ RG
Sbjct: 121 EAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 180

Query: 190 EVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249
           + +YP+  IN+LKAHG+S  +S  +NGYALN    +QGMP R+  AKIACLDF+LQKTKM
Sbjct: 181 QPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM 240

Query: 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAI 309
           +LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300

Query: 310 AVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKG 369
           AVRRV K D++ IAKA+GAT++ST A++EGEETF++S+LG A+EVV+ER+ DD++I+IK 
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKN 360

Query: 370 TKTTSAYIILGKVPSIILR 388
           TK  ++        S+ILR
Sbjct: 361 TKARTSA-------SVILR 372
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.15
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.14
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.07
1o13_A136 Probable NIFB protein; ribonuclease H-like motif f 80.5
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=3.3e-83  Score=657.28  Aligned_cols=373  Identities=66%  Similarity=1.021  Sum_probs=357.3

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccC
Q 015935           11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG   90 (398)
Q Consensus        11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G   90 (398)
                      .+++++|.+++.+|+.||..+++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus         2 ~~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G   81 (529)
T 3iyg_A            2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG   81 (529)
T ss_pred             CcchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-hhcccCCccCHHHHHHHHHhhcccCccCCchH
Q 015935           91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD  169 (398)
Q Consensus        91 DGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~-~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~  169 (398)
                      |||||++||+++||+++.+++.+|+||+.|++||+.|++.++++|++ + +++++..+++.|.++|+|+++||+.+++++
T Consensus        82 DGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~-s~~v~~~~~e~l~~va~tsl~sK~~~~~~~  160 (529)
T 3iyg_A           82 DGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENL-IINTDELGRDCLINAAKTSMSSKVIGINGD  160 (529)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHhccCcccccHH
Confidence            99999999999999999999999999999999999999999999998 6 888886679999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccccccc
Q 015935          170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM  249 (398)
Q Consensus       170 ~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~  249 (398)
                      +|++++++|+.++.+...+|...||+++|+|++++|+++.||++++|++|++++.|++||++++||||++++++|+++++
T Consensus       161 ~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~  240 (529)
T 3iyg_A          161 FFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM  240 (529)
T ss_pred             HHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCcccccc
Confidence            99999999999996433445456788899999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935          250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT  329 (398)
Q Consensus       250 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~  329 (398)
                      +.++++.++++++++.+.++|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|||++|||+
T Consensus       241 e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~  320 (529)
T 3iyg_A          241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGAT  320 (529)
T ss_pred             cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935          330 MVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS  384 (398)
Q Consensus       330 ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~  384 (398)
                      +++++++++..+++++.++|+|+.|+++++|+++|++|+||+.+.+|||++||++
T Consensus       321 iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t  375 (529)
T 3iyg_A          321 VLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGAN  375 (529)
T ss_pred             eecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEECCch
Confidence            9999988865456788999999999999999999999999999999999999997
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 398
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 8e-40
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 6e-38
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 8e-38
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-37
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 7e-37
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 4e-36
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-30
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-21
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-20
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 6e-18
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 3e-17
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 1e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 8e-14
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 7e-08
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  140 bits (353), Expect = 8e-40
 Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 1/205 (0%)

Query: 14  RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
           R+ G++ +  N+ A +A+A+ V+++LGP G+DKMLVD IGD+ I+NDGATILK ++VEHP
Sbjct: 1   REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHP 60

Query: 74  AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
            AK++VE+++ QD  VGDGTT+ V+++ ELLK+A  L+   +HPT I +GYRLA+ EA K
Sbjct: 61  TAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARK 120

Query: 134 YVNEKLAVKVEKLGKDSLVNCA-KTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVK 192
            ++E         G       A + +  +  +GG          +A++ +  T       
Sbjct: 121 IIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGI 180

Query: 193 YPIKGINILKAHGKSARDSYFLNGY 217
            PI  +  LKA  +  R S  ++  
Sbjct: 181 DPINTLIKLKADDEKGRISVGVDLD 205
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.95
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.93
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.87
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.69
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.69
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.61
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.32
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.2
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.2
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.18
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.07
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 96.54
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 93.49
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 92.2
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 91.82
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=100.00  E-value=5.1e-38  Score=273.91  Aligned_cols=167  Identities=28%  Similarity=0.396  Sum_probs=147.0

Q ss_pred             cceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 015935          210 DSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVI  289 (398)
Q Consensus       210 dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lV  289 (398)
                      ||++++|++|++.++|++||+.++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|||||
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv   80 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV   80 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEccccccccCCcCCCCCCcce-eeeEEEEEEcCeeEEEEe
Q 015935          290 LTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIK  368 (398)
Q Consensus       290 l~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~  368 (398)
                      +|+++||+.+++||.++||++++++++++|+|||++|||+++++++++      +++++|+ |+.++++.+|+++|++|+
T Consensus        81 ~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l------~~~~lG~~~~~~~~~~~~~~~~~~~~  154 (168)
T d1gmla_          81 ITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEEL------REDDVGTGAGLLEIKKIGDEYFTFIT  154 (168)
T ss_dssp             EESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGC------CGGGSBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhc------CcccccccccEEEEEEECCeEEEEEE
Confidence            999999999999999999999999999999999999999999999764      6788998 577778899999999999


Q ss_pred             cCCCCCeEEEEccc
Q 015935          369 GTKTTSAYIILGKV  382 (398)
Q Consensus       369 g~~~~~~~til~~~  382 (398)
                      ||+.+.+|||++||
T Consensus       155 ~~~~~~~~TIllRG  168 (168)
T d1gmla_         155 DCKDPKACTILLRG  168 (168)
T ss_dssp             EESSTTSCEEEEEC
T ss_pred             ecCCCCEEEEEEeC
Confidence            99999999999988
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure