Citrus Sinensis ID: 015942

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MAPSLSSLLSNSTHTFLSANPNPNSNLIHRRYLSISSFTPKQTPKNHNLTSTPPPPPPPQNEKPTSEKRSFAVVTGELFLGIASRLLNGSNRLAANNFETIPLIERSEKLGSSGEDYKERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKIVEDESIS
ccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHcccccEEEEEEEEcccccEEEEccccHHHHHHHHHHHccccccccccccEEEccEEEEEcccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
ccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccccccHHHEEEEcccccccEEcccHHcHHHHccccccccccEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHcccEEEEEEEEcccccEEEEEccccHHHHHHHHHHHccccEEcccccccHcccEEEEcccccccccccccccEEEEEcccccEEEEccccccccccccEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
mapslssllsnsthtflsanpnpnsnlihrrylsissftpkqtpknhnltstpppppppqnekptsekrsfAVVTGELFLGIASRLLNgsnrlaannfetiplierseklgssgedYKERIGavmedeiepeVIWEQRVRDIEaekerrvvttpgfsfsaagllfpyHLGVAQLLIEKgyikettplagssaGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQkflpddvhtrssgrVRVAVTQIlwrprgllvdqfdskEDLINAVLtssfipgylaprpatmfrnrlcidggltlfmpptsasntirvcafpasalrlqgigispdcnpenrASRRELFNWALEPAEDQILDKLFEFGyldaavwaennpiekivedesis
MAPSLSSLLSNSTHTFLSANPNPNSNLIHRRYLSISSFTPKQtpknhnltstpppppppqnekptSEKRSFAVVTGELFLGIASRLLNGSNRlaannfetiplierseklgssgedYKERIgavmedeiepeviwEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKflpddvhtrssgrvrvavtqilwrprgllvdqfDSKEDLINAVLtssfipgylaprpaTMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVwaennpiekivedesis
MAPslssllsnsthtflsANPNPNSNLIHRRYLSISSFTPKQTPKNHNLTSTpppppppQNEKPTSEKRSFAVVTGELFLGIASRLLNGSNRLAANNFETIPLIERSEKLGSSGEDYKERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKIVEDESIS
**********************************************************************FAVVTGELFLGIASRLLNGSNRLAANNFETIPLI****************IGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCN******RRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIE*********
***********************************************************************AVVTGELFLGIASRLL*********************************IGAVMEDEIEPEVI********************GFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKI*******
MAPSLSSLLSNSTHTFLSANPNPNSNLIHRRYLSISSFTPK****************************SFAVVTGELFLGIASRLLNGSNRLAANNFETIPLIERSEKLGSSGEDYKERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKIVEDESIS
***********STHTFLSANPNPNSNLIHRRYLSISSFTPKQTPK**NLTSTPPPPPPPQNEK*****RSFAVVTGELFLGIASRLLNG****************************KERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKIV******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPSLSSLLSNSTHTFLSANPNPNSNLIHRRYLSISSFTPKQTPKNHNLTSTPPPPPPPQNEKPTSEKRSFAVVTGELFLGIASRLLNGSNRLAANNFETIPLIERSEKLGSSGEDYKERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKIVEDESIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
P0C548 478 Patatin-like phospholipas yes no 0.567 0.472 0.302 2e-19
Q8BJ56 486 Patatin-like phospholipas no no 0.567 0.465 0.290 3e-18
Q2KI18 486 Patatin-like phospholipas no no 0.577 0.473 0.285 2e-17
Q9NST1 481 Patatin-like phospholipas yes no 0.565 0.467 0.292 5e-17
Q96AD5 504 Patatin-like phospholipas no no 0.567 0.448 0.279 1e-16
Q91WW7 413 Patatin-like phospholipas no no 0.565 0.544 0.272 1e-16
P41247253 Patatin-like phospholipas no no 0.530 0.833 0.278 3e-15
Q11186 621 Uncharacterized protein C no no 0.384 0.246 0.302 3e-13
Q8N8W4 532 Patatin-like phospholipas no no 0.537 0.402 0.264 8e-13
Q3V1D5 599 Patatin-like phospholipas no no 0.545 0.362 0.257 6e-12
>sp|P0C548|PLPL2_RAT Patatin-like phospholipase domain-containing protein 2 OS=Rattus norvegicus GN=Pnpla2 PE=2 SV=1 Back     alignment and function desciption
 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 22/248 (8%)

Query: 156 FSFSAAGLLFPYHLGVAQLLIEKG--YIKETTPLAGSSAGAIACAVIASGASMQEALNAT 213
            SF+  G L  YH+GVA  L E     +   T + G+SAGA+    + +GA + EA    
Sbjct: 10  ISFAGCGFLGVYHIGVASCLREHAPFLVANATHIYGASAGALTATALVTGACLGEAGANI 69

Query: 214 KTLAENCRRR-----GTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLL 268
             +++  R+R       +F L   +R  L K LP D HTR+SGR+ +++T++      ++
Sbjct: 70  IEVSKEARKRFLGPLHPSFNLVKTIRGCLLKTLPADCHTRASGRLGISLTRV-SDGENVI 128

Query: 269 VDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASNTIRVCAF 328
           +  F SK++LI A + S+FIP Y    P T+   R  +DGG++  +P     NTI V  F
Sbjct: 129 ISHFSSKDELIQANVCSTFIPVYCGLIPPTLQGVRY-VDGGISDNLPLYELKNTITVSPF 187

Query: 329 PA--------SALRLQGIGISPDCNPENRASRRELFNW--ALEPAEDQILDKLFEFGYLD 378
                     S+  +  + I+   N   + + R L+    AL P E  +L ++ + GY D
Sbjct: 188 SGESDICPQDSSTNIHELRIT---NTSIQFNLRNLYRLSKALFPPEPMVLREMCKQGYRD 244

Query: 379 AAVWAENN 386
              +   N
Sbjct: 245 GLRFLRRN 252
Catalyzes the initial step in triglyceride hydrolysis in adipocyte and non-adipocyte lipid droplets. Also has acylglycerol transacylase activity. May act coordinately with LIPE/HLS within the lipolytic cascade. Regulates adiposome size and may be involved in the degradation of adiposomes. May play an important role in energy homeostasis. May play a role in the response of the organism to starvation, enhancing hydrolysis of triglycerides and providing free fatty acids to other tissues to be oxidized in situations of energy depletion.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 3
>sp|Q8BJ56|PLPL2_MOUSE Patatin-like phospholipase domain-containing protein 2 OS=Mus musculus GN=Pnpla2 PE=1 SV=1 Back     alignment and function description
>sp|Q2KI18|PLPL2_BOVIN Patatin-like phospholipase domain-containing protein 2 OS=Bos taurus GN=PNPLA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NST1|PLPL3_HUMAN Patatin-like phospholipase domain-containing protein 3 OS=Homo sapiens GN=PNPLA3 PE=1 SV=2 Back     alignment and function description
>sp|Q96AD5|PLPL2_HUMAN Patatin-like phospholipase domain-containing protein 2 OS=Homo sapiens GN=PNPLA2 PE=1 SV=1 Back     alignment and function description
>sp|Q91WW7|PLPL3_MOUSE Patatin-like phospholipase domain-containing protein 3 OS=Mus musculus GN=Pnpla3 PE=2 SV=1 Back     alignment and function description
>sp|P41247|PLPL4_HUMAN Patatin-like phospholipase domain-containing protein 4 OS=Homo sapiens GN=PNPLA4 PE=2 SV=3 Back     alignment and function description
>sp|Q11186|YPD7_CAEEL Uncharacterized protein C05D11.7 OS=Caenorhabditis elegans GN=C05D11.7 PE=2 SV=2 Back     alignment and function description
>sp|Q8N8W4|PLPL1_HUMAN Patatin-like phospholipase domain-containing protein 1 OS=Homo sapiens GN=PNPLA1 PE=2 SV=3 Back     alignment and function description
>sp|Q3V1D5|PLPL1_MOUSE Patatin-like phospholipase domain-containing protein 1 OS=Mus musculus GN=Pnpla1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
255575412407 conserved hypothetical protein [Ricinus 0.824 0.805 0.832 1e-157
118486599416 unknown [Populus trichocarpa] 0.929 0.889 0.700 1e-154
224070535382 predicted protein [Populus trichocarpa] 0.869 0.905 0.728 1e-153
224054280368 predicted protein [Populus trichocarpa] 0.786 0.850 0.787 1e-152
356558526383 PREDICTED: uncharacterized protein LOC10 0.934 0.971 0.690 1e-152
388490708400 unknown [Medicago truncatula] 0.854 0.85 0.739 1e-151
356528791392 PREDICTED: uncharacterized protein LOC10 0.949 0.964 0.683 1e-150
124360437400 Patatin [Medicago truncatula] 0.804 0.8 0.772 1e-147
449464490387 PREDICTED: patatin-like phospholipase do 0.952 0.979 0.684 1e-146
449497653387 PREDICTED: patatin-like phospholipase do 0.952 0.979 0.682 1e-145
>gi|255575412|ref|XP_002528608.1| conserved hypothetical protein [Ricinus communis] gi|223531953|gb|EEF33766.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/334 (83%), Positives = 301/334 (90%), Gaps = 6/334 (1%)

Query: 67  EKRSFAVVTGELFLGIASRLL-NGS-NRLAANNFET--IPLIERSEKLGSSGEDYKERIG 122
           EK+SFAVVTGELFLGIASRLL +GS N+    +F    + L E+S   G++  DY+ERIG
Sbjct: 66  EKKSFAVVTGELFLGIASRLLKSGSRNKYKDGDFSNSGVSLFEKSN--GNANVDYEERIG 123

Query: 123 AVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIK 182
           AVMEDEIEPEVIWEQRV+DIEAEKERRVVT+PGFSFSAAGLLFPYHLGVAQLLIEKGYIK
Sbjct: 124 AVMEDEIEPEVIWEQRVKDIEAEKERRVVTSPGFSFSAAGLLFPYHLGVAQLLIEKGYIK 183

Query: 183 ETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRDILQKFLP 242
           ETTPLAGSSAGAI CAVIASGASM EAL ATK LAE+CR RGTAFRLGAVLRD+L+KFLP
Sbjct: 184 ETTPLAGSSAGAIVCAVIASGASMHEALEATKVLAEDCRLRGTAFRLGAVLRDVLEKFLP 243

Query: 243 DDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRN 302
           DD H RS+GRVRVAVTQILWRPRGLLVDQFDSKEDLINAV TSSFIPGYLAPRPATMFRN
Sbjct: 244 DDAHIRSNGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRN 303

Query: 303 RLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEP 362
           RLCIDGGLTLFMPPTSA+ TIRVCAFPAS L LQGIGISPDCNPENRAS RELFNWALEP
Sbjct: 304 RLCIDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCNPENRASPRELFNWALEP 363

Query: 363 AEDQILDKLFEFGYLDAAVWAENNPIEKIVEDES 396
           AED ILD+LF+ GY DAAVWAE NP++K+V+D+S
Sbjct: 364 AEDDILDRLFQLGYSDAAVWAEENPVDKVVQDDS 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118486599|gb|ABK95138.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224070535|ref|XP_002303165.1| predicted protein [Populus trichocarpa] gi|222840597|gb|EEE78144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224054280|ref|XP_002298181.1| predicted protein [Populus trichocarpa] gi|222845439|gb|EEE82986.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558526|ref|XP_003547556.1| PREDICTED: uncharacterized protein LOC100791724 [Glycine max] Back     alignment and taxonomy information
>gi|388490708|gb|AFK33420.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528791|ref|XP_003532981.1| PREDICTED: uncharacterized protein LOC100793123 [Glycine max] Back     alignment and taxonomy information
>gi|124360437|gb|ABN08447.1| Patatin [Medicago truncatula] Back     alignment and taxonomy information
>gi|449464490|ref|XP_004149962.1| PREDICTED: patatin-like phospholipase domain-containing protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497653|ref|XP_004160462.1| PREDICTED: patatin-like phospholipase domain-containing protein 3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2196685369 AT1G33270 [Arabidopsis thalian 0.706 0.761 0.758 2.3e-117
ZFIN|ZDB-GENE-040718-27 473 pnpla3 "patatin-like phospholi 0.557 0.469 0.330 1.7e-21
UNIPROTKB|F1SG26256 PNPLA4 "Uncharacterized protei 0.555 0.863 0.315 1.2e-19
UNIPROTKB|G3X777253 PNPLA4 "Uncharacterized protei 0.550 0.865 0.314 7.8e-19
UNIPROTKB|F6UPP1 413 PNPLA3 "Uncharacterized protei 0.577 0.556 0.313 1.1e-18
UNIPROTKB|E2QSY8 415 PNPLA3 "Uncharacterized protei 0.577 0.554 0.313 1.2e-18
RGD|1309044 478 Pnpla2 "patatin-like phospholi 0.565 0.470 0.307 3.5e-18
WB|WBGene00008370266 D1054.1 [Caenorhabditis elegan 0.562 0.842 0.298 6.4e-18
UNIPROTKB|C9IZF6190 PNPLA4 "Patatin-like phospholi 0.427 0.894 0.327 2.4e-17
UNIPROTKB|P41247253 PNPLA4 "Patatin-like phospholi 0.427 0.671 0.327 2.4e-17
TAIR|locus:2196685 AT1G33270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 213/281 (75%), Positives = 250/281 (88%)

Query:   116 DYKERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLL 175
             D  +RI +V+EDEIEP +IWEQRV+D+EAEKERRV+T+PGFSFSAAGLLFPYHLGVAQLL
Sbjct:    80 DDGDRIASVIEDEIEPAMIWEQRVKDVEAEKERRVITSPGFSFSAAGLLFPYHLGVAQLL 139

Query:   176 IEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLRD 235
             IEKGYIKETTPLAGSSAGAI CAVI SGA+M+EAL ATK LA +CRR GTAFRLGAVLR+
Sbjct:   140 IEKGYIKETTPLAGSSAGAIVCAVITSGATMREALEATKELAYDCRRNGTAFRLGAVLRE 199

Query:   236 ILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPR 295
              +++ LPDD+H RS+GR+RVA+TQ+ WRPRGLLVDQFDSK DLI+AV TSSFIPGYLAPR
Sbjct:   200 SMERLLPDDIHIRSNGRIRVAITQVFWRPRGLLVDQFDSKSDLIDAVFTSSFIPGYLAPR 259

Query:   296 PATMFRNRLCIDGGLTLFMPPTSASNTIRVCAFPASALRLQGIGISPDCNPENRASRREL 355
             PATMFRNRLC+DGGLTLFMPPT+A+ T+RVCAF AS  +L+GI I PDCNP NRA+ R+L
Sbjct:   260 PATMFRNRLCVDGGLTLFMPPTAAAKTVRVCAFSASNFKLKGIEICPDCNPLNRATSRQL 319

Query:   356 FNWALEPAEDQILDKLFEFGYLDAAVWAENNPIEKIVEDES 396
              NWALEPAED++L++LFE GY DAA WAE NP+E +V D++
Sbjct:   320 LNWALEPAEDEVLERLFELGYADAATWAEMNPVEGLVYDDT 360
GO:0005886 "plasma membrane" evidence=ISM
GO:0006629 "lipid metabolic process" evidence=IEA
ZFIN|ZDB-GENE-040718-27 pnpla3 "patatin-like phospholipase domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SG26 PNPLA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3X777 PNPLA4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6UPP1 PNPLA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSY8 PNPLA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1309044 Pnpla2 "patatin-like phospholipase domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00008370 D1054.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|C9IZF6 PNPLA4 "Patatin-like phospholipase domain-containing protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P41247 PNPLA4 "Patatin-like phospholipase domain-containing protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!
3rd Layer3.1.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
cd07224233 cd07224, Pat_like, Patatin-like phospholipase 1e-129
cd07204243 cd07204, Pat_PNPLA_like, Patatin-like phospholipas 2e-87
cd07198172 cd07198, Patatin, Patatin-like phospholipase 9e-46
cd07222246 cd07222, Pat_PNPLA4, Patatin-like phospholipase do 2e-30
cd07220249 cd07220, Pat_PNPLA2, Patatin-like phospholipase do 8e-30
cd07218245 cd07218, Pat_iPLA2, Calcium-independent phospholip 4e-28
cd07221252 cd07221, Pat_PNPLA3, Patatin-like phospholipase do 7e-26
cd07219 382 cd07219, Pat_PNPLA1, Patatin-like phospholipase do 7e-17
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 2e-15
cd07223 405 cd07223, Pat_PNPLA5-mammals, Patatin-like phosphol 8e-11
cd07210221 cd07210, Pat_hypo_W_succinogenes_WS1459_like, Hypo 8e-10
cd07205175 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like 1e-06
cd01819155 cd01819, Patatin_and_cPLA2, Patatins and Phospholi 2e-06
cd07231323 cd07231, Pat_SDP1-like, Sugar-Dependent 1 like lip 3e-05
cd07209215 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical p 4e-05
cd07207194 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr 2e-04
cd07206298 cd07206, Pat_TGL3-4-5_SDP1, Triacylglycerol lipase 3e-04
COG1752306 COG1752, RssA, Predicted esterase of the alpha-bet 3e-04
>gnl|CDD|132863 cd07224, Pat_like, Patatin-like phospholipase Back     alignment and domain information 
 Score =  370 bits (952), Expect = e-129
 Identities = 147/232 (63%), Positives = 174/232 (75%), Gaps = 2/232 (0%)

Query: 155 GFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATK 214
           GFSFSAAGLLFPYHLGV  LLIE G I ETTPLAG+SAG++A A  ASG S +EAL AT+
Sbjct: 1   GFSFSAAGLLFPYHLGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLSPEEALEATE 60

Query: 215 TLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTR-SSGRVRVAVTQILWRPRGLLVDQFD 273
            LAE+CR  GTAFRLG VLRD L K LPDD H R + GR+RVAVTQ+   PRGLLV  FD
Sbjct: 61  ELAEDCRSNGTAFRLGGVLRDELDKTLPDDAHERCNRGRIRVAVTQLFPVPRGLLVSSFD 120

Query: 274 SKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSASN-TIRVCAFPASA 332
           SK DLI+A+L S  IPGYLAP PATMFR +LC+DGG  LF+PPT+A++ T+RVC FPAS 
Sbjct: 121 SKSDLIDALLASCNIPGYLAPWPATMFRGKLCVDGGFALFIPPTTAADRTVRVCPFPASR 180

Query: 333 LRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAE 384
             ++G  +  D   +   SRR+L NWALEPA+D +L +LF  GY DA  WA+
Sbjct: 181 SSIKGQNLDNDDTEDVPYSRRQLLNWALEPADDAMLLELFNEGYKDANEWAK 232

Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates. Length = 233
>gnl|CDD|132843 cd07204, Pat_PNPLA_like, Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>gnl|CDD|132837 cd07198, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132861 cd07222, Pat_PNPLA4, Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>gnl|CDD|132859 cd07220, Pat_PNPLA2, Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>gnl|CDD|132857 cd07218, Pat_iPLA2, Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>gnl|CDD|132860 cd07221, Pat_PNPLA3, Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132862 cd07223, Pat_PNPLA5-mammals, Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>gnl|CDD|132849 cd07210, Pat_hypo_W_succinogenes_WS1459_like, Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases Back     alignment and domain information
>gnl|CDD|132869 cd07231, Pat_SDP1-like, Sugar-Dependent 1 like lipase Back     alignment and domain information
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>gnl|CDD|132845 cd07206, Pat_TGL3-4-5_SDP1, Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>gnl|CDD|224666 COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 100.0
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 100.0
cd07219 382 Pat_PNPLA1 Patatin-like phospholipase domain conta 100.0
cd07223 405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 100.0
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 100.0
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 100.0
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 100.0
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 100.0
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 100.0
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 100.0
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 100.0
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 100.0
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 100.0
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 100.0
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 100.0
PRK10279300 hypothetical protein; Provisional 100.0
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 100.0
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 99.98
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 99.97
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 99.97
KOG3773354 consensus Adiponutrin and related vesicular transp 99.97
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 99.97
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 99.97
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.97
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.97
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.97
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.95
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 99.92
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 99.92
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 99.92
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 99.91
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 99.91
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 99.9
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 99.89
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.89
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.89
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 99.88
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.86
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.73
COG3621 394 Patatin [General function prediction only] 99.66
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 99.59
PF11815145 DUF3336: Domain of unknown function (DUF3336); Int 98.6
cd00147 438 cPLA2_like Cytosolic phospholipase A2, catalytic d 98.36
KOG3773354 consensus Adiponutrin and related vesicular transp 98.14
cd07202 430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 97.58
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 97.42
cd07200 505 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 96.73
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 96.66
smart00022 549 PLAc Cytoplasmic phospholipase A2, catalytic subun 96.42
KOG1325 571 consensus Lysophospholipase [Lipid transport and m 96.26
cd07203 552 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA 96.12
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 96.09
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 85.92
KOG0513 503 consensus Ca2+-independent phospholipase A2 [Lipid 85.72
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 84.03
PF00698318 Acyl_transf_1: Acyl transferase domain; InterPro: 83.71
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 83.42
COG3340224 PepE Peptidase E [Amino acid transport and metabol 81.03
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information 
Probab=100.00  E-value=6.5e-45  Score=345.95  Aligned_cols=231  Identities=64%  Similarity=1.032  Sum_probs=202.1

Q ss_pred             EEEEcCCcchHHHHHHHHHHHHHcCCCCCCCcEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCcccchHHHH
Q 015942          155 GFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAENCRRRGTAFRLGAVLR  234 (398)
Q Consensus       155 aLvLsGGG~rG~~hiGVlkaL~e~gl~~~~d~IaGTSaGAivAalla~g~~~~el~~~~~~~~~~~~~~g~~~~~~~~l~  234 (398)
                      +|+|||||++|+||+||+++|+|+|+.++++.|+|+||||++|+++++|.+.+++.+.+.++...++..+..++.+..++
T Consensus         1 glsfsggG~lg~yh~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   80 (233)
T cd07224           1 GFSFSAAGLLFPYHLGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLSPEEALEATEELAEDCRSNGTAFRLGGVLR   80 (233)
T ss_pred             CeeecchHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            68999999999999999999999999887899999999999999999999999999998888888888888888889999


Q ss_pred             HHHHHhCCCchhhhcC-CcEEEEEEeccCCCceeEEeccCChhhHHHHHHHhcccccccCCcccceeCCeEEEeccccCC
Q 015942          235 DILQKFLPDDVHTRSS-GRVRVAVTQILWRPRGLLVDQFDSKEDLINAVLTSSFIPGYLAPRPATMFRNRLCIDGGLTLF  313 (398)
Q Consensus       235 ~~L~~~l~~~~~e~~~-~rL~I~aT~l~~~~~~~l~~~f~s~~~LidAV~AS~aiP~~f~pv~~~~~~G~~yvDGGl~~n  313 (398)
                      +.++++++.+.++.++ +++.|++|++.+..++++++.|.+++++++||+|||++|++|+|++...++|+.|+|||+++|
T Consensus        81 ~~l~~~lp~d~~e~~~~~~l~i~~T~~~~~~~~~~v~~f~~~~~l~~al~AS~~iP~~~~p~~~v~~~G~~~vDGG~~~~  160 (233)
T cd07224          81 DELDKTLPDDAHERCNRGRIRVAVTQLFPVPRGLLVSSFDSKSDLIDALLASCNIPGYLAPWPATMFRGKLCVDGGFALF  160 (233)
T ss_pred             HHHHHHcCcHHHHHhcCCCEEEEEEecccCCCceEEEecCCcchHHHHHHHhccCCcccCCCCCeeECCEEEEeCCcccC
Confidence            9999999999999988 999999999974435777888888999999999999999999965222799999999999999


Q ss_pred             CCch-hhccceeecCCchhhcccccceecCCCCCCCcchhccccceEEccCCHHHHHHHHHHHHHHHHHHHHh
Q 015942          314 MPPT-SASNTIRVCAFPASALRLQGIGISPDCNPENRASRRELFNWALEPAEDQILDKLFEFGYLDAAVWAEN  385 (398)
Q Consensus       314 ~P~~-~~~~ti~v~~f~~~~lg~~~i~I~~~~~~~~~~s~~~l~~~~l~P~~~~~l~elf~~Gy~dA~~~l~~  385 (398)
                      +|+. ...++|+||||++....+....|.++.+..+..+..++++|+++|++.+.+++||++||+||++|+++
T Consensus       161 ~P~~~~~~~~v~v~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~p~~~~~l~~~~~~g~~da~~~~~~  233 (233)
T cd07224         161 IPPTTAADRTVRVCPFPASRSSIKGQNLDNDDTEDVPYSRRQLLNWALEPADDAMLLELFNEGYKDANEWAKE  233 (233)
T ss_pred             CCCCCCCCCEEEEeCCCccccccccCCCCCcccccccccHHHHHHHHHcCCCHHHHHHHHHhccHHHHHHhhC
Confidence            9998 66689999999987654444445444444444555677889999999999999999999999999975

Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM) Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit Back     alignment and domain information
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] Back     alignment and domain information
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>COG3340 PepE Peptidase E [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
4akf_A 577 Crystal Structure Of Vipd From Legionella Pneumophi 6e-05
>pdb|4AKF|A Chain A, Crystal Structure Of Vipd From Legionella Pneumophila Length = 577 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 155 GFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQ------E 208
           G   S  G     +LG+ Q L E+G IK  T ++G+SAGA+  +++A G  ++      E
Sbjct: 39  GLVLSGGGAKGISYLGMIQALQERGKIKNLTHVSGASAGAMTASILAVGMDIKDIKKLIE 98
Query: 209 ALNATKTLAENC---RRRGTAFR 228
            L+ TK L  +    R RG  FR
Sbjct: 99  GLDITKLLDNSGVGFRARGDRFR 121

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 1e-06
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Length = 711 Back     alignment and structure
 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 155 GFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQE------ 208
               S  G     + G    L EKG +     ++GSSAG I  A++ASG S         
Sbjct: 130 SLVLSGGGAKGAAYPGAMLALEEKGMLDGIRSMSGSSAGGITAALLASGMSPAAFKTLSD 189

Query: 209 ALNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRP 264
            ++    L  + ++      + + +   L+K L + +   S   + V         
Sbjct: 190 KMDLISLLDSSNKKLKLFQHISSEIGASLKKGLGNKIGGFSELLLNVLPRIDSRAE 245

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
4akf_A 577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.95
1oxw_A373 Patatin; alpha/beta class fold with approximately 99.94
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.93
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 98.02
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 85.25
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 83.95
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 82.93
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 81.24
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 81.17
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 81.08
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 80.99
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 80.3
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
Probab=99.95  E-value=5.3e-28  Score=249.80  Aligned_cols=165  Identities=19%  Similarity=0.183  Sum_probs=130.8

Q ss_pred             CCCcEEEEcCCcchHHHHHHHHHHHHHcCCCCCCCcEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHH------------
Q 015942          151 VTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEALNATKTLAE------------  218 (398)
Q Consensus       151 ~~~~aLvLsGGG~rG~~hiGVlkaL~e~gl~~~~d~IaGTSaGAivAalla~g~~~~el~~~~~~~~~------------  218 (398)
                      .++++|||+|||+||+||+||+++|++.|+.|.++.|+|||+||++|+++++|.+++++.+.+..+..            
T Consensus        35 ~~~~~LvLsGGG~RG~~hiGVL~aLee~Gi~p~~d~IaGTSaGAIiAa~~A~G~s~~el~~~~~~l~~~~~~d~s~l~~~  114 (577)
T 4akf_A           35 PEHKGLVLSGGGAKGISYLGMIQALQERGKIKNLTHVSGASAGAMTASILAVGMDIKDIKKLIEGLDITKLLDNSGVGFR  114 (577)
T ss_dssp             CCCCEEEECCCSSGGGTHHHHHHHHHHTTCGGGCCEEEECTHHHHHHHHHHTTCCHHHHHHHHTTCCTTTTSCSCSSSSC
T ss_pred             CCceEEEECCcHHHHHHHHHHHHHHHHcCCCccCCEEEeEcHhHHHHHHHHcCCCHHHHHHHHHhCCHHHhhCccccccc
Confidence            46899999999999999999999999999987799999999999999999999999998887654210            


Q ss_pred             -----------HHH--------------------hcCCcccchH---HHHHHHHHhCC----------------------
Q 015942          219 -----------NCR--------------------RRGTAFRLGA---VLRDILQKFLP----------------------  242 (398)
Q Consensus       219 -----------~~~--------------------~~g~~~~~~~---~l~~~L~~~l~----------------------  242 (398)
                                 .++                    ..++.+. ++   .+++++++.+.                      
T Consensus       115 ~~~~ll~~~l~~~~~~~~k~~l~~v~~~~~~~l~~~~Gl~~-G~~~~~le~wl~e~l~~~~~d~~~~~~~~~~~~~~L~~  193 (577)
T 4akf_A          115 ARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILK-QKIALYEDKLSRAGIVINNVDDIINLTKSVKDLEKLDK  193 (577)
T ss_dssp             BCSHHHHHHHHHHHHHHHHHHHTTSCSCCCSTHHHHHHHHH-HHHHHHHHHHHHTTCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhcccccccccccccccccccccCcccC-CchhHHHHHHHHHHHhccccccccccccchhhhhhhhh
Confidence                       000                    0011112 55   77788877765                      


Q ss_pred             --------------------CchhhhcC--------------CcEEEEEEeccCCCceeEEeccCCh-hhHHHHHHHhcc
Q 015942          243 --------------------DDVHTRSS--------------GRVRVAVTQILWRPRGLLVDQFDSK-EDLINAVLTSSF  287 (398)
Q Consensus       243 --------------------~~~~e~~~--------------~rL~I~aT~l~~~~~~~l~~~f~s~-~~LidAV~AS~a  287 (398)
                                          +.+|+++.              .++.|++|++. +++.++++.-+.+ ..+++||+||||
T Consensus       194 ~~~~~p~~l~~~kg~~tg~~~iTF~dL~~l~~~~p~~~~~~~k~L~IvATDv~-TGk~v~F~~~~~~d~~l~dAVRASsA  272 (577)
T 4akf_A          194 ALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVVTNQT-KHELERYSEDTTPQQSIAQVVQWSGA  272 (577)
T ss_dssp             HHHTSCSCCBCTTCCBCCCSSCBHHHHHHHHHHSCGGGGGGSCEEEEEEEETT-TTEEEEEETTTCTTSBHHHHHHHHTC
T ss_pred             hhccccchhhcccccccCCCCcCHHHHhhccccCccccccCCCeEEEEEEECC-CCCEEEeCCCCCCCCCHHHHHHHHhC
Confidence                                34554442              26999999998 8888887654222 368999999999


Q ss_pred             cccccCCcccceeCCeEEEeccccCCCCchhh
Q 015942          288 IPGYLAPRPATMFRNRLCIDGGLTLFMPPTSA  319 (398)
Q Consensus       288 iP~~f~pv~~~~~~G~~yvDGGl~~n~P~~~~  319 (398)
                      +|++|+|+.  .++|+.|+|||+.+|+|+..+
T Consensus       273 lP~~F~PV~--~IdG~~yvDGGV~~N~PV~~l  302 (577)
T 4akf_A          273 HPVLFVPGR--NAKGEYIADGGILDNMPEIEG  302 (577)
T ss_dssp             CTTTBCCEE--CTTCCEEECTTSSSCCCCCTT
T ss_pred             ccccccCEE--eECCEEEECCCcccCCchHHH
Confidence            999999982  389999999999999999863
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 398
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 5e-07
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 23/195 (11%), Positives = 54/195 (27%), Gaps = 32/195 (16%)

Query: 167 YHLGVAQLLIEKGYIKETTP----------LAGSSAGAIACAVIASGASMQEALNATKTL 216
               + + L  +    +             + G+S G +  A+I++         A K +
Sbjct: 19  IPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEI 78

Query: 217 AEN-----------CRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRP- 264
                           +       G  L  +LQ+ L +    ++   V ++   I     
Sbjct: 79  VPFYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKP 138

Query: 265 ----RGLLVDQFDSKEDLINAVLTSSFIPGYLAP------RPATMFRNRLCIDGGLTLFM 314
               +  L +  +    + +   +++  P Y  P                 +DG +    
Sbjct: 139 VIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVA 198

Query: 315 PPTSASNTIRVCAFP 329
            P   S ++      
Sbjct: 199 DPALLSISVATRLAQ 213

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 99.88
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 97.57
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 81.2
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=99.88  E-value=8.8e-23  Score=199.32  Aligned_cols=160  Identities=15%  Similarity=0.201  Sum_probs=122.2

Q ss_pred             EEEEcCCcchHHHHHHHHHHHHHcCC----------CCCCCcEEeccHHHHHHHHHHcCCCH-------HHHHHHHHHHH
Q 015942          155 GFSFSAAGLLFPYHLGVAQLLIEKGY----------IKETTPLAGSSAGAIACAVIASGASM-------QEALNATKTLA  217 (398)
Q Consensus       155 aLvLsGGG~rG~~hiGVlkaL~e~gl----------~~~~d~IaGTSaGAivAalla~g~~~-------~el~~~~~~~~  217 (398)
                      .|+|+|||+||++|+|||++|++++.          ...||+|+|||+|||+|+++++|.+.       .++.+.+....
T Consensus         7 iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~~~~~~~   86 (360)
T d1oxwa_           7 VLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHG   86 (360)
T ss_dssp             EEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHHHHHhhc
Confidence            49999999999999999999998741          22378999999999999999998753       34444443333


Q ss_pred             HHHHhc-----CCcccchHHHHHHHHHhCCCchhhhcCCcEEEEEEeccCCCceeEEeccCC------hhhHHHHHHHhc
Q 015942          218 ENCRRR-----GTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLVDQFDS------KEDLINAVLTSS  286 (398)
Q Consensus       218 ~~~~~~-----g~~~~~~~~l~~~L~~~l~~~~~e~~~~rL~I~aT~l~~~~~~~l~~~f~s------~~~LidAV~AS~  286 (398)
                      ...+..     ++.++ .+.+++.+++.+++.++.+...++.+++++.. ++.++++.....      ...+++|++|||
T Consensus        87 ~~~f~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~a~~ASs  164 (360)
T d1oxwa_          87 PQIFNPSGQILGPKYD-GKYLMQVLQEKLGETRVHQALTEVVISSFDIK-TNKPVIFTKSNLANSPELDAKMYDISYSTA  164 (360)
T ss_dssp             HHHTCCCCCSSSCSCC-CHHHHHHHHHHHTTCBGGGCSSEEEEEEEETT-TTEEEEEESSSTTTCGGGCCBHHHHHHHHH
T ss_pred             chhhhccccccCcccc-hHHHHHHHHHHhCCchhhhccCcceeEecccC-CCCeEEEeccccccCCcccchHHHhhhhhh
Confidence            333221     23444 68999999999999999999899999999987 777777654321      135889999999


Q ss_pred             ccccccCCcccceeCC---------eEEEeccccCC-CCchhh
Q 015942          287 FIPGYLAPRPATMFRN---------RLCIDGGLTLF-MPPTSA  319 (398)
Q Consensus       287 aiP~~f~pv~~~~~~G---------~~yvDGGl~~n-~P~~~~  319 (398)
                      |+|++|+|+   .+.+         ..|+|||+..| .|...+
T Consensus       165 A~P~~F~p~---~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a  204 (360)
T d1oxwa_         165 AAPTYFPPH---YFVTNTSNGDEYEFNLVDGAVATVADPALLS  204 (360)
T ss_dssp             CCTTTSCCE---EEEEECTTSCEEEEEEEEGGGGTCSSCHHHH
T ss_pred             cCCCCCCCE---EEecccCCCCceeEEecccchhhccCchHHH
Confidence            999999999   4433         25899999865 676543
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure