Citrus Sinensis ID: 015949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHcccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHcccccEEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHcccHHcEEEEcccccccHHHHHHHHHcccccccHHHEEEEcccccccccEccccccccccccccHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHEcHHHHHHHHHc
Coil and Loop (DISEMBL)
mkvryeccetgFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLansgtpsdrkhaskilpvVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGlaigakvapFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDlhgneagkggeltrdETTIITGALELSEKTardamtpasetfaidvsFKLDRNLMRLVLEkghsrvpvknlltihpedevpvknvsirriprvsetmplYDILNEFQKGHSHMAVVVRhqndreqphvpiehstderevrvdvdgqshlkEKCLKTKRSLKkrnrlshdanlhrgastsknwsrdfhsevlhitddpqrmengeweAVGIITLEDVIEELLQ
Flexible Loop (DISEMBL)
mkvryeccetgfFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANsgtpsdrkhaskILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVdlhgneagkggeltrdeTTIITGALELSEKTARDAMTpasetfaidvsfKLDRNLMRLVlekghsrvpvknlltihpedevpvknvsirriprvsetMPLYDILNEFQKGHSHMAVVVRhqndreqphvpiehstderevrvdvdgqshlkekclktkrslkkrnrlshdanlhrgastsknwsrdfHSEVLhitddpqrmenGEWEAVGIITLEDVIEELLQ
Low Complexity Region (SEG)
MKVRYECCEtgfftrvvvvtllvlfAglmsgltlglmsmslVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ
Disordered region (IsUnstruct)
***RYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLAN**********SKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEA********DETTIITGALE**************ETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV************************************************************************VLHI********NGEWEAVGIITLEDVIE****
Disordered Region (DISOPRED)
*******CETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDL****************KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGN******AELKTLVDL**********L**DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLK***************************************************NGEWEAVGIITLEDVIEELLQ
Disordered Region (DISEMBL)
MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ
Disordered Region (DISPRO)
****YECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDV**QS***********************************SRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q9ZQR4	423	DUF21 domain-containing p	yes	no	0.992	0.931	0.674	1e-151
Q8VZI2	424	DUF21 domain-containing p	no	no	0.997	0.933	0.652	1e-147
Q8RY60	527	DUF21 domain-containing p	no	no	0.994	0.749	0.508	1e-113
Q9LTD8	500	DUF21 domain-containing p	no	no	0.904	0.718	0.513	1e-111
Q67XQ0	494	DUF21 domain-containing p	no	no	0.931	0.748	0.511	1e-101
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.947	0.753	0.498	1e-100
Q4V3C7	495	DUF21 domain-containing p	no	no	0.934	0.749	0.495	7e-97
Q9USJ3	679	Uncharacterized protein C	yes	no	0.720	0.421	0.370	1e-53
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.712	0.400	0.370	4e-52
Q3TWN3	875	Metal transporter CNNM2 O	yes	no	0.715	0.324	0.352	9e-47

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/412 (67%), Positives = 323/412 (78%), Gaps = 18/412 (4%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V YECC T FF  + V+ LLVLFAGLMSGLTLGLMSMSLVDLEVLA SGTP DR HA+
Sbjct: 1   MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV+ QHLLLCTLL CNAAAMEALPIFLD+LV AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +R+GLAIGA VAPFV++LV IC P+A+P+SKLLD LLG G  ALFRRAELKTLVDLHGNE
Sbjct: 121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALELSEK A+DAMTP S+TF ID++ KLDR+LM L+L+KGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLTI+P++E+ VKNV+IRRIPRV ET+PLYDILNEFQKGHS
Sbjct: 241 VPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDE-REVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDA 345
           HMAVVVR Q D+  P    + + +   EVRVDVD +   +E  LK +RSL+K     + A
Sbjct: 301 HMAVVVR-QCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWKSFPNRA 359

Query: 346 NLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
           N     S SK WS+D  +++L + + P    + E +AVGIIT+EDVIEELLQ
Sbjct: 360 N--SLGSRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQ 409

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/411 (65%), Positives = 311/411 (75%), Gaps = 15/411 (3%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y CC   FF  + V+  LVLFAGLMSGLTLGLMS+SLVDLEVLA SGTP  RK+A+
Sbjct: 1   MAVEYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAA 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV+ QHLLL TLL CNAAAME LPIFLD LV AWGAI+ISVTLIL FGEIIPQ++C
Sbjct: 61  KILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSIC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLAIGA VAPFV++LV IC P+A+P+SKLLD LLG    ALFRRAELKTLVD HGNE
Sbjct: 121 SRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALELSEK  +DAMTP S+ F ID++ KLDR+LM L+LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLTI+P++E+PVKNV+IRRIPRV E +PLYDILNEFQKG S
Sbjct: 241 VPVYYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDAN 346
           HMAVVVR Q D+  P      S  E  V VD +G    +E+ L+TKRSL+K     + A+
Sbjct: 301 HMAVVVR-QCDKIHPLPSKNGSVKEARVDVDSEGTPTPQERMLRTKRSLQKWKSFPNRAS 359

Query: 347 LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
             +G S SK WS+D  +++L +  +P      E EAVGIIT+EDVIEELLQ
Sbjct: 360 SFKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQ 410

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/431 (50%), Positives = 282/431 (65%), Gaps = 36/431 (8%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M     CC T F   VV++  LV FAGLM+GLTLGLMS+ LVDLEVL  SG P DR +A 
Sbjct: 1   MSSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAG 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KI PVV+ QHLLLCTLL  N+ AMEALPIFLD +VP W AI++SVTLIL FGEI+PQAVC
Sbjct: 61  KIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
            RYGL +GA +APFV++L+ + FPI++P+SK+LD +LGKG+  L RRAELKT V+ HGNE
Sbjct: 121 TRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGG+LT DET+IITGALEL+EKTA+DAMTP S  F++++   L+   +  ++  GHSR
Sbjct: 181 AGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLL +    EVP++ +S+R+IPRVSETMPLYDILNEFQKGHS
Sbjct: 241 VPVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLK---------- 336
           H+AVV +  +++EQ     E+  + R+ +   D     K+ C K K   +          
Sbjct: 301 HIAVVYKDLDEQEQSPETSENGIERRKNKKTKD--ELFKDSCRKPKAQFEVSEKEVFKIE 358

Query: 337 ---KRNRLSHDANLHRG-------ASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGII 386
               ++  S +    +G       A+ +K   R     +L I + P        E VG+I
Sbjct: 359 TGDAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPTNEEVVGVI 418

Query: 387 TLEDVIEELLQ 397
           T+EDVIEELLQ
Sbjct: 419 TMEDVIEELLQ 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/405 (51%), Positives = 278/405 (68%), Gaps = 46/405 (11%)

Query: 7   CCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVV 66
           CCET F+  ++V   LV+FAGLMSGLTLGLMS+S+V+LEV+  +G P DRK+A KILP+V
Sbjct: 8   CCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEKILPLV 67

Query: 67  RRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLA 126
           + QHLLLCTLL  NA AMEALPIF+DSL+PAWGAI+ISVTLIL+FGEIIPQAVC+RYGL+
Sbjct: 68  KNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCSRYGLS 127

Query: 127 IGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGE 186
           IGAK++  V++++ + FP+++P+SKLLDLLLGK +  L  RAELK+LV +HGNEAGKGGE
Sbjct: 128 IGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAGKGGE 187

Query: 187 LTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP---- 242
           LT DETTII+GAL++S+K+A+DAMTP S+ F++D++FKLD   M L+   GHSR+P    
Sbjct: 188 LTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIPIYSV 247

Query: 243 ----------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292
                     VKNL+ + PEDE  ++++ IRR+P+V   +PLYDILN FQ G SHMA VV
Sbjct: 248 NPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHMAAVV 307

Query: 293 RHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGAS 352
             +N     + P+   +        ++G  +                    DAN+     
Sbjct: 308 GTKNHTNT-NTPVHEKS--------INGSPN-------------------KDANVFLSIP 339

Query: 353 TSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
            + N S   H   +   D    + + + E +GIITLEDV+EEL+Q
Sbjct: 340 -ALNSSETSHQSPIRYIDS---ISDEDEEVIGIITLEDVMEELIQ 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/401 (51%), Positives = 266/401 (66%), Gaps = 31/401 (7%)

Query: 12  FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHL 71
           + T   +   LVLFAG+MSGLTLGLMS+ LV+LE+L  SGTP+++K A+ I PVV++QH 
Sbjct: 35  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQ 94

Query: 72  LLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKV 131
           LL TLL CNA AME LPI+LD L   + AI++SVT +L+FGE+IPQA+C RYGLA+GA  
Sbjct: 95  LLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANF 154

Query: 132 APFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDE 191
              V+IL+ +C+PIAFP+ K+LDL+LG  N+ALFRRA+LK LV +H  EAGKGGELT DE
Sbjct: 155 VWLVRILMTLCYPIAFPIGKILDLVLGH-NDALFRRAQLKALVSIHSQEAGKGGELTHDE 213

Query: 192 TTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP--------- 242
           TTII+GAL+L+EKTA++AMTP   TF++DV+ KLD   M  +L +GHSRVP         
Sbjct: 214 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNV 273

Query: 243 -----VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND 297
                VK+LLT+ PE E  V  V IRRIPRV   MPLYDILNEFQKG SHMA VV+ +  
Sbjct: 274 IGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGK 333

Query: 298 REQ-PHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKN 356
            +  P   +E  TDE     D D  + L          L KR     +  +    +  ++
Sbjct: 334 SKVPPSTLLEEHTDESN---DSDLTAPL----------LLKREGNHDNVIVTIDKANGQS 380

Query: 357 WSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
           + ++  S     +   + +E+G  E +GIITLEDV EELLQ
Sbjct: 381 FFQNNESGPHGFSHTSEAIEDG--EVIGIITLEDVFEELLQ 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/403 (49%), Positives = 271/403 (67%), Gaps = 27/403 (6%)

Query: 12  FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHL 71
           +F  V V   LVLFAG+MSGLTLGLMS+ LV+LE+L  SG+ +++K A+ ILPVV++QH 
Sbjct: 33  WFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVKKQHQ 92

Query: 72  LLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKV 131
           LL TLL CNAAAMEALPI LD +   + A+++SVT +L+FGEIIPQA+C+RYGLA+GA  
Sbjct: 93  LLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANF 152

Query: 132 APFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDE 191
              V+IL+ IC+PIA+P+ K+LD ++G  N+ LFRRA+LK LV +H  EAGKGGELT +E
Sbjct: 153 LWLVRILMIICYPIAYPIGKVLDAVIGH-NDTLFRRAQLKALVSIHSQEAGKGGELTHEE 211

Query: 192 TTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP--------- 242
           T II+GAL+LS+KTA +AMTP   TF++DV+ KLD   +  +L +GHSR+P         
Sbjct: 212 TMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGNPKNI 271

Query: 243 -----VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND 297
                VK+LLT+  E E PV +VSIR+IPRV   MPLYDILNEFQKG SHMA VV+ ++ 
Sbjct: 272 IGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKDK 331

Query: 298 REQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHD--ANLHRGASTSK 355
            ++ ++ +  + +  +  +     S+L    LK +         SHD   ++ +     K
Sbjct: 332 DKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---------SHDVVVDIDKVPKHVK 382

Query: 356 NWSRDFHSEVLHITDDPQRMENGE-WEAVGIITLEDVIEELLQ 397
           N  R+F        D P  +E+ E  E +GIITLEDV EELLQ
Sbjct: 383 NRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQ 425

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  354 bits (908), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 199/402 (49%), Positives = 262/402 (65%), Gaps = 31/402 (7%)

Query: 12  FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHL 71
           + T   +   LVLFAG+MSGLTLGLMS+ LV+LE+L  SGTP ++K ++ I PVV++QH 
Sbjct: 34  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQ 93

Query: 72  LLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKV 131
           LL TLL  NA AME LPI+LD +   + AI++SVT +L  GE+IPQA+C RYGLA+GA +
Sbjct: 94  LLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAICTRYGLAVGANL 153

Query: 132 APFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDE 191
              V+IL+ + +PI+FP++K+LD +LG  N+ LFRRA+LK LV +HG  AGKGGELT DE
Sbjct: 154 VWLVRILMVLSYPISFPIAKMLDWVLGH-NDPLFRRAQLKALVSIHGEAAGKGGELTHDE 212

Query: 192 TTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP--------- 242
           TTII+GAL+L+EKTA++AMTP   TF++DV+ KLDR  M  +  +GHSRVP         
Sbjct: 213 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNV 272

Query: 243 -----VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND 297
                VK+LLT+ PE    V  V IRRIPRV   MPLYDILNEFQKG SHMA VV+ +  
Sbjct: 273 IGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSSHMAAVVKVKG- 331

Query: 298 REQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNW 357
           + + H    H  +  E  V  +  S L    L     LK+    +HD+ + R     K  
Sbjct: 332 KSKGHPSTLHEENSGESNVSSN-NSELTAPLL-----LKREG--NHDSVIVR---IDKAN 380

Query: 358 SRDFHSEV--LHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
            + F SE      +   + +E+G  + +GIITLEDV EELLQ
Sbjct: 381 GQSFISEAGRQGFSHTSEEIEDG--DVIGIITLEDVFEELLQ 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 180/308 (58%), Gaps = 22/308 (7%)

Query: 12  FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRR-QH 70
           ++ ++++  +L+L  G+ +GLT+GLM    + L+VL  SG  S+R HA K+L ++RR +H
Sbjct: 62  YWMKLIISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKH 121

Query: 71  LLLCTLLFCNAAAMEALPIFLDSLVPA-WGAIVISVTLILSFGEIIPQAVCARYGLAIGA 129
            +L TLL  N    E LPI  DS++   W A++IS  +I+ FGE+IPQA C RYGL+IGA
Sbjct: 122 WVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGA 181

Query: 130 KVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTR 189
           K+ P V  ++ + +PIA+P + +LD  LG+    +++++ LKTLV LH +      +L +
Sbjct: 182 KLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDLGID--KLNQ 239

Query: 190 DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------ 243
           DE TIIT  L+L EK A   MTP  + F + +   LD +L+  ++  G+SR+PV      
Sbjct: 240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299

Query: 244 ---------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH 294
                    K L+   P+D+ PV   ++  +P+        D+LN  Q+G SHM ++   
Sbjct: 300 HDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILI--- 356

Query: 295 QNDREQPH 302
            N   +PH
Sbjct: 357 SNSPGEPH 364

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 172/302 (56%), Gaps = 19/302 (6%)

Query: 9   ETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRR 68
           E    T  ++  +LVL  G+ +GLTLGLM    V L+V++ SG+ S++K A ++L ++ R
Sbjct: 58  EASVTTYYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISR 117

Query: 69  -QHLLLCTLLFCNAAAMEALPIFLD-SLVPAWGAIVISVTLILSFGEIIPQAVCARYGLA 126
            +H +L TLL  N    E LPI LD  L   W A+V S  LI+ FGEIIPQ+VC +YGL 
Sbjct: 118 GKHWVLVTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQ 177

Query: 127 IGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGE 186
           +GA   PFV +L+ + +P+A+P++ LLD +LG+ +  +++++ LKTLV LH     +   
Sbjct: 178 VGAFFCPFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--R 235

Query: 187 LTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP---- 242
           LT+DE TII+  L+L  K   + MTP    F +     LD   +  +   G SR+P    
Sbjct: 236 LTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLP 295

Query: 243 -----------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVV 291
                      V+ L++  P+D +P+ +  +  +P  S      +ILN FQ+G +HM VV
Sbjct: 296 NEPNNFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVV 355

Query: 292 VR 293
            +
Sbjct: 356 SK 357

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3TWN3|CNNM2_MOUSE Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=3

 Score =  187 bits (476), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 172/306 (56%), Gaps = 22/306 (7%)

Query: 12  FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHL 71
           F+ +V+ ++LL+  +G+ SGL LGLM++  ++L ++ N GT  ++ +A +I PV R+ + 
Sbjct: 255 FWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNY 314

Query: 72  LLCTLLFCNAAAMEALPIFLDSLV-PAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAK 130
           LLC+LL  N      L I LD +      A+V+S   I+ FGEI+PQA+C+R+GLA+GA 
Sbjct: 315 LLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGAN 374

Query: 131 VAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRD 190
                +  + + FP ++PVSKLLD +LG+    ++ R +L  ++ +         +L ++
Sbjct: 375 TIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKE 430

Query: 191 ETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP-------- 242
           E  II GALEL  KT  D MTP  + F I     LD N M  ++E G++R+P        
Sbjct: 431 ELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSN 490

Query: 243 ------VKNLLTIHPEDEVPVKNVSI---RRIPRVSETMPLYDILNEFQKGHSHMAVVVR 293
                 VK+L  + P+D  P+K ++      +  V     L  +L EF+KG SH+A+V R
Sbjct: 491 IVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR 550

Query: 294 HQNDRE 299
             N+ E
Sbjct: 551 VNNEGE 556

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
359496988	425	PREDICTED: DUF21 domain-containing prote	0.992	0.927	0.722	1e-162
255579525	429	Magnesium and cobalt efflux protein corC	0.994	0.920	0.700	1e-162
359496990	419	PREDICTED: DUF21 domain-containing prote	0.977	0.926	0.719	1e-160
449438283	425	PREDICTED: DUF21 domain-containing prote	1.0	0.934	0.693	1e-158
357476069	425	Metal transporter CNNM4 [Medicago trunca	1.0	0.934	0.690	1e-158
224129788	423	predicted protein [Populus trichocarpa]	0.992	0.931	0.695	1e-157
224056311	432	predicted protein [Populus trichocarpa]	1.0	0.918	0.681	1e-157
449451325	420	PREDICTED: DUF21 domain-containing prote	0.987	0.933	0.676	1e-157
359475517	430	PREDICTED: DUF21 domain-containing prote	0.994	0.918	0.679	1e-156
255562092	425	conserved hypothetical protein [Ricinus	0.994	0.929	0.693	1e-156

>gi|359496988|ref|XP_002263785.2| PREDICTED: DUF21 domain-containing protein At2g14520-like isoform 1 [Vitis vinifera] gi|296090649|emb|CBI41048.3| unnamed protein product [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/414 (72%), Positives = 334/414 (80%), Gaps = 20/414 (4%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y CC TGFF  + ++ LLVLFAGLMSGLTLGLMSMSLVDLEVLA SGTPSDRKHA 
Sbjct: 1   MAVEYRCCGTGFFLHISIIALLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPSDRKHAL 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVVRRQHLLLCTLL CNAAAME LPIFLDSLV  WGAI+ISVTLIL FGEIIPQAVC
Sbjct: 61  KILPVVRRQHLLLCTLLICNAAAMETLPIFLDSLVSTWGAILISVTLILLFGEIIPQAVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +++GLAIGA VAPFV+ILV ICFP+A+P+SKLLD LLGKG+EALFRRAELKTLVD HGNE
Sbjct: 121 SQHGLAIGAAVAPFVRILVWICFPVAYPISKLLDRLLGKGHEALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELTRDETTIITGALEL+EKTARDAMTP SETF++D++ KLDR+LMRL+LEKGHSR
Sbjct: 181 AGKGGELTRDETTIITGALELTEKTARDAMTPISETFSVDINAKLDRDLMRLILEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLL+IHPEDEV VKNV+IRRIPRV ETMPLYDILNEFQKGHS
Sbjct: 241 VPVYSEQERNIIGLILVKNLLSIHPEDEVSVKNVTIRRIPRVLETMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHL-KEKCLKTKRSLKK-RNRLSHD 344
           HMAVVV  QN     H   E  TD ++VRVD+ G  H  +EK L+TKR+LKK R+     
Sbjct: 301 HMAVVV-GQNSHTVEHSGSELPTDVKDVRVDIYGDKHYPQEKMLRTKRTLKKCRSNTDDT 359

Query: 345 ANLHRGASTSKNWSRDFHSEVLHITDDP-QRMENGEWEAVGIITLEDVIEELLQ 397
            N  RG S SK W +  H EVL+I D P  ++  G  EA+GIIT+EDVIEE+LQ
Sbjct: 360 DNSERGTSKSKKWGKGLHPEVLNIDDTPLPKLSEG--EAIGIITMEDVIEEILQ 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579525|ref|XP_002530605.1| Magnesium and cobalt efflux protein corC, putative [Ricinus communis] gi|223529853|gb|EEF31785.1| Magnesium and cobalt efflux protein corC, putative [Ricinus communis]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/411 (70%), Positives = 329/411 (80%), Gaps = 16/411 (3%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M + Y CC TGFF  + VV  LVLFAGLMSGLTLGLMSMSLVDLEVLA SGTPSDRKHA+
Sbjct: 1   MAIEYVCCGTGFFIHIAVVVFLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPSDRKHAT 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV+RQHLLLCTLL CNAAAME LPIFLD L+ AWGAI+ISVTLIL FGEI+PQAVC
Sbjct: 61  KILPVVKRQHLLLCTLLICNAAAMETLPIFLDGLITAWGAILISVTLILLFGEILPQAVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLAIGA VAP V++LV ICFPIA+P+SKLLD LLG  +E LFRRAELKTLVDLHGNE
Sbjct: 121 SRYGLAIGAAVAPIVRVLVCICFPIAYPISKLLDYLLGDEHEPLFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELTRDET II GALEL+EKTA+DAMTP SETF+ID++ KLD  LMR +LE GHSR
Sbjct: 181 AGKGGELTRDETMIIAGALELTEKTAKDAMTPISETFSIDINAKLDSALMRFILESGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLTIHP+DE+PVKNV+IR+IPRVSETMPLYDILNEFQKGHS
Sbjct: 241 VPVYHENPRNVIGLVLVKNLLTIHPDDEIPVKNVTIRKIPRVSETMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDAN 346
           HMA V+R   + EQ H   + +   R+V+VD+DG+SH + K +K+ RS+KK      + N
Sbjct: 301 HMAAVIRQNGEAEQLHG--KGTAPVRDVKVDIDGESHTQMKSIKSNRSVKKLKSFPIEVN 358

Query: 347 LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
           L RGAS SK W+   HSEVL I ++P    + E EA+GIITLEDVIEELLQ
Sbjct: 359 LQRGASKSKRWANGVHSEVLRIDENPLVGLSEEGEAIGIITLEDVIEELLQ 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496990|ref|XP_003635392.1| PREDICTED: DUF21 domain-containing protein At2g14520-like isoform 2 [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/414 (71%), Positives = 334/414 (80%), Gaps = 26/414 (6%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y CC TGFF  + ++ LLVLFAGLMSGLTLGLMSMSLVDLEVLA SGTPSDRKHA 
Sbjct: 1   MAVEYRCCGTGFFLHISIIALLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPSDRKHAL 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVVRRQHLLLCTLL CNAAAME LPIFLDSLV  WGAI+ISVTLIL FGEIIPQAVC
Sbjct: 61  KILPVVRRQHLLLCTLLICNAAAMETLPIFLDSLVSTWGAILISVTLILLFGEIIPQAVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +++GLAIGA VAPFV+ILV ICFP+A+P+SKLLD LLGKG+EALFRRAELKTLVD HGNE
Sbjct: 121 SQHGLAIGAAVAPFVRILVWICFPVAYPISKLLDRLLGKGHEALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELTRDETTIITGALEL+EKTARDAMTP SETF++D++ KLDR+LMRL+LEKGHSR
Sbjct: 181 AGKGGELTRDETTIITGALELTEKTARDAMTPISETFSVDINAKLDRDLMRLILEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLL+IHPEDEV VKNV+IRRIPRV ETMPLYDILNEFQKGHS
Sbjct: 241 VPVYSEQERNIIGLILVKNLLSIHPEDEVSVKNVTIRRIPRVLETMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHL-KEKCLKTKRSLKK-RNRLSHD 344
           HMAVVV  QN        +EHS   ++VRVD+ G  H  +EK L+TKR+LKK R+     
Sbjct: 301 HMAVVV-GQNSH-----TVEHS-GMKDVRVDIYGDKHYPQEKMLRTKRTLKKCRSNTDDT 353

Query: 345 ANLHRGASTSKNWSRDFHSEVLHITDDP-QRMENGEWEAVGIITLEDVIEELLQ 397
            N  RG S SK W +  H EVL+I D P  ++  G  EA+GIIT+EDVIEE+LQ
Sbjct: 354 DNSERGTSKSKKWGKGLHPEVLNIDDTPLPKLSEG--EAIGIITMEDVIEEILQ 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438283|ref|XP_004136918.1| PREDICTED: DUF21 domain-containing protein At2g14520-like [Cucumis sativus]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/411 (69%), Positives = 321/411 (78%), Gaps = 14/411 (3%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V YECC   FF  ++++ LLVLFAGLMSGLTLGLMSMSLVDLEVLA SGTP DR HA+
Sbjct: 1   MAVEYECCTPNFFIHILIIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIHAA 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV+ QHLLLCTLL CNAAAMEALPIFLDSLV AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLAIGA VAPFV++LV ICFP+A+P+SKLLD LLG G  ALFRRAELKTLV+LHGNE
Sbjct: 121 SRYGLAIGATVAPFVRVLVWICFPVAYPISKLLDFLLGHGRVALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALELSEKTA DAMTP SETFAID++ KLDRNLM LVLEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTAGDAMTPISETFAIDINAKLDRNLMNLVLEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLTIHP+DEVPVK+V+IRRIPRV ETMPLYDILNEFQKGHS
Sbjct: 241 VPVYYEEPTNIIGLILVKNLLTIHPDDEVPVKSVTIRRIPRVPETMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDAN 346
           HMA+VV+  N              +++VR+DVDG+   +EK LK KR L+K        N
Sbjct: 301 HMAIVVKQCNKMNGKSDDKTSDDSQKDVRIDVDGEKPPQEKTLKNKRPLQKWKSFPTSNN 360

Query: 347 LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
             R  S SK W++D +S++L I   P      E EAVG+IT+EDVIEELLQ
Sbjct: 361 SFRSGSRSKKWTKDMYSDILQIDGSPLPKLAEEEEAVGVITMEDVIEELLQ 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476069|ref|XP_003608320.1| Metal transporter CNNM4 [Medicago truncatula] gi|355509375|gb|AES90517.1| Metal transporter CNNM4 [Medicago truncatula]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/411 (69%), Positives = 325/411 (79%), Gaps = 14/411 (3%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y CCE+ FF  ++V+  LV+FAGLMSGLTLGLMS+SLVDLEVLA SGTP+DRKHA 
Sbjct: 1   MAVEYTCCESEFFIHILVIIFLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPNDRKHAV 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVVR QHLLLCTLL CNAAAMEALPIFLDSLV AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLAIGA V PFV++LV IC+P+AFP+SKLLD LLG  NEALFRRAELKTLVDLHGNE
Sbjct: 121 SRYGLAIGASVTPFVRVLVWICYPVAFPISKLLDYLLGHRNEALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALELSEKTA DAMTP SETFAID++ KLDR LM  +LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMTEILEKGHSR 240

Query: 241 VPV--------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VPV              KNLLTIHPEDE PVK+V+IRRIPRV E+MPLYDILNEFQKGHS
Sbjct: 241 VPVYYEQSTNIIGLILIKNLLTIHPEDESPVKSVTIRRIPRVPESMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDAN 346
           HMAVVVR  +  +QP    + +   +EV+VD+DG+  L+EK LK K  ++K     +   
Sbjct: 301 HMAVVVRQCDKTKQPSSKNDSNDSVKEVKVDIDGEKPLQEKVLKPKIPIQKWKSFPNTNK 360

Query: 347 LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
            +RG S S+ WS++ +S++L I   P      E EAVGIIT+EDVIEELLQ
Sbjct: 361 SNRGGSRSRKWSKNMYSDILEIDGSPLPNIPEEEEAVGIITMEDVIEELLQ 411

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129788|ref|XP_002320671.1| predicted protein [Populus trichocarpa] gi|222861444|gb|EEE98986.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/411 (69%), Positives = 332/411 (80%), Gaps = 17/411 (4%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M   Y CC  GF++RV VV  LVLFAG+MSGLTLGLMSMSLVDLEVLA SGTP+DRKHA 
Sbjct: 1   MGFEYRCCGAGFWSRVAVVAFLVLFAGMMSGLTLGLMSMSLVDLEVLAKSGTPNDRKHAI 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV+RQHLLLCTLL CNAAAMEALP+FLDSLV AWGAI+ISVTLIL FGEIIPQA+C
Sbjct: 61  KILPVVKRQHLLLCTLLICNAAAMEALPVFLDSLVSAWGAILISVTLILFFGEIIPQAIC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLAIGA +AP VQ+LV ICFPIA+P+SKLLD  LGKG+ +LFRR+EL+TLVD HGNE
Sbjct: 121 SRYGLAIGAALAPVVQVLVMICFPIAYPISKLLDYFLGKGDMSLFRRSELETLVDFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELTRDETTII GAL+L+ KTARDAMTP SETF++D++ K DR LMRL+LE+GHSR
Sbjct: 181 AGKGGELTRDETTIIAGALQLTGKTARDAMTPISETFSVDINAKFDRALMRLILEQGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLT+HPEDEVPVKNV+IR+IPRVSE+MPLYDILNEFQKGHS
Sbjct: 241 VPVYNEQPRNIIGLVLVKNLLTVHPEDEVPVKNVTIRKIPRVSESMPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDAN 346
           HMAVV+R  +D +Q  +  E++T  R+VRVD+DG+ H  + CLK K   K ++ LS +  
Sbjct: 301 HMAVVIREGSDAKQ--LAGENATHVRDVRVDIDGERHPPKICLKNKGIKKSKSSLSSEEK 358

Query: 347 LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
             R A  SK WS   HSEVLHI D+P  +   + EAVGIITLEDVIEE+LQ
Sbjct: 359 FEREAYKSKRWSNGVHSEVLHIDDNPLPVLT-QREAVGIITLEDVIEEILQ 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056311|ref|XP_002298798.1| predicted protein [Populus trichocarpa] gi|222846056|gb|EEE83603.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 280/411 (68%), Positives = 322/411 (78%), Gaps = 14/411 (3%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y CCET FF  ++++  LV+FAGLMSGLTLGLMSMSLVDLEVLA SGTP DR +A+
Sbjct: 1   MTVEYSCCETNFFIHILIIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIYAA 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV+ QHLLLCTLL CNAAAME LPIFLDSLV AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
            RYGLAIGA V PFV++LV ICFP+A+P+SKLLD +LG G+ ALFRRAELKTLV+ HGNE
Sbjct: 121 TRYGLAIGATVTPFVRVLVWICFPVAYPISKLLDYMLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALEL+EKTA DAMTP SETFAIDV+ KLDR LM L+LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDVNAKLDRELMSLILEKGHSR 240

Query: 241 VPV--------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VPV              KNLLTIHPED+VPVKNV+IRRIPRV ET+PLYDILNEFQKGHS
Sbjct: 241 VPVYYEQSTNIIGLILAKNLLTIHPEDKVPVKNVTIRRIPRVLETLPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDAN 346
           HMAVVVR     E+ HV        +EV+VD+DG+   K+K LK+ R+L+K     +  N
Sbjct: 301 HMAVVVRQCKKPEEQHVSSASDNPVKEVKVDIDGEKPPKDKTLKSMRALQKWKSFPNSGN 360

Query: 347 LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
               +S SK W++D  S++LH+  +P      E EAVGIIT+EDVIEELLQ
Sbjct: 361 NSFRSSRSKKWTKDLDSDILHLNGNPLPKLPEEEEAVGIITMEDVIEELLQ 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451325|ref|XP_004143412.1| PREDICTED: DUF21 domain-containing protein At4g33700-like [Cucumis sativus] gi|449508533|ref|XP_004163339.1| PREDICTED: DUF21 domain-containing protein At4g33700-like [Cucumis sativus]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 280/414 (67%), Positives = 336/414 (81%), Gaps = 22/414 (5%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M+V Y CC TGFF+R+ +V  LVLFAGLMSGLTLGLMSMSLV++EVLA SG PSDRK+A+
Sbjct: 1   MEVEYSCCTTGFFSRIGIVIFLVLFAGLMSGLTLGLMSMSLVEIEVLAKSGKPSDRKYAA 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           +ILPV R+QHLLLCTLL CNA AMEALPIFLDSLV AWGAI+ISVTLIL FGEIIPQAVC
Sbjct: 61  RILPVCRKQHLLLCTLLICNAVAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQAVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLA+GA VAPFV++LV ICFP+A+P+SKLLD+ LGK ++ALFRRAELKTLVD HGNE
Sbjct: 121 SRYGLAVGATVAPFVRVLVWICFPVAYPISKLLDISLGKEHKALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELTRDETTII GALEL+EK ARD MTP SETFAID++  LD NL++L+LEKGHSR
Sbjct: 181 AGKGGELTRDETTIIAGALELTEKVARDVMTPISETFAIDINANLDSNLVKLILEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNL+T    D +P+K+  IR+IPRVSETMPLY+ILN+FQKGHS
Sbjct: 241 VPVFYERPTNIIGLVLVKNLITRLSPDGIPIKSFPIRKIPRVSETMPLYNILNDFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIE-HSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDA 345
           HMAV+VR   ++E P   ++ +  + ++V+V++DG++H +EK L TKRSLK+ N L   +
Sbjct: 301 HMAVIVR---EKENPERSVKGNQLEAKDVKVEIDGENHQQEKGLNTKRSLKRLNTLVDRS 357

Query: 346 NLHRGASTSKNWSRDFHSEVLHITDD--PQRMENGEWEAVGIITLEDVIEELLQ 397
           N +R  S SK WS+DF+SEVLHI DD  P+  E G  EA+GIITLEDVIEELLQ
Sbjct: 358 NSYRKFSGSKKWSKDFNSEVLHIADDLLPKLSEEG--EAIGIITLEDVIEELLQ 409

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475517|ref|XP_002272975.2| PREDICTED: DUF21 domain-containing protein At2g14520-like [Vitis vinifera] gi|147815300|emb|CAN61244.1| hypothetical protein VITISV_016135 [Vitis vinifera]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/418 (67%), Positives = 326/418 (77%), Gaps = 23/418 (5%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y CCE  FF  ++++  LVLFAGLMSGLTLGLMSMSLVDLEVLA SGTP DRKHA 
Sbjct: 1   MAVEYRCCEAEFFIHILIIVGLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAE 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVV++QHLLLCTLL  NAAAMEALPIFLD L+ AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct: 61  KILPVVKKQHLLLCTLLIFNAAAMEALPIFLDGLITAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +RYGLAIGA VAP V+ILV IC+P+A+P+SKLLD LLG G+ ALFRRAELKTLVD HGNE
Sbjct: 121 SRYGLAIGATVAPVVRILVWICYPVAYPISKLLDFLLGHGHVALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALELSEKTA DAM+P S+TFAID++ KLDR+LM L+LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMSPISDTFAIDINAKLDRDLMNLILEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLTIHPEDE+PVKNV+IRRIPRV ET+PLYDILNEFQKGHS
Sbjct: 241 VPVYYEQPTNIIGLILVKNLLTIHPEDEIPVKNVTIRRIPRVQETLPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQP---HVPIEHSTDEREVRVDVDGQ--SHLKEKCLKTKRSLKKRNRL 341
           HMAVVVR  N  E+      P ++S   ++V+VD+DG+  +  +EK LK KR L+K    
Sbjct: 301 HMAVVVRQCNKMEEQSSNKSPADNSV--KDVKVDIDGEKPASAQEKSLKNKRGLQKWKSF 358

Query: 342 SHDAN--LHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
            + AN     G   SK W+RD +S++L I   P     GE EAVGIIT+EDVIEELLQ
Sbjct: 359 PNSANNSYRSGTPRSKKWARDIYSDILQIDGSPLSKLAGEEEAVGIITMEDVIEELLQ 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562092|ref|XP_002522054.1| conserved hypothetical protein [Ricinus communis] gi|223538653|gb|EEF40254.1| conserved hypothetical protein [Ricinus communis]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/414 (69%), Positives = 325/414 (78%), Gaps = 19/414 (4%)

Query: 1   MKVRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHAS 60
           M V Y+CCET FF  +VV+  LVLFAGLMSGLTLGLMSMS+VDLEVLA SGTP DRKHA+
Sbjct: 1   MAVEYKCCETEFFIHIVVIVFLVLFAGLMSGLTLGLMSMSIVDLEVLAQSGTPKDRKHAA 60

Query: 61  KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
           KILPVVR QHLLLCTLL CNAAAME LPIFLD LV AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct: 61  KILPVVRNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
           +R+GLAIGA VAP V+ILV ICFP+A+P+SKLLD LLG G+ ALFRRAELKTLV+ HGNE
Sbjct: 121 SRHGLAIGATVAPVVRILVWICFPVAYPISKLLDYLLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
           AGKGGELT DETTII GALEL+EKTA DAMTP SETFAID++ KLD+ LM L+LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDINAKLDKELMSLILEKGHSR 240

Query: 241 VP--------------VKNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
           VP              VKNLLTIHPEDEVPVKNV+IRRI RV E +PLYDILNEFQKGHS
Sbjct: 241 VPVYYEQPTNIIGLILVKNLLTIHPEDEVPVKNVTIRRIWRVQEMLPLYDILNEFQKGHS 300

Query: 287 HMAVVVRHQNDREQPHVPIEHSTDE--REVRVDVDGQSHLKEKCLKTKR-SLKKRNRLSH 343
           HMAVVVR  N  EQ   P  +S D+  +EV+VD+DG+   +EK LK +R  L+K     +
Sbjct: 301 HMAVVVRKFNKTEQQ--PNGNSADDPVKEVKVDIDGEKLAQEKILKNRRHPLQKWKSFPN 358

Query: 344 DANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
           + N     S SK WS+D  +E+LHI  +P      E EAVGIIT+EDVIEELLQ
Sbjct: 359 NGNNSFKGSRSKKWSKDIDAEILHINGNPLPKLPEEEEAVGIITMEDVIEELLQ 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.992	0.931	0.618	1.5e-120
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.992	0.929	0.602	1.4e-117
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.727	0.548	0.570	6.2e-91
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.672	0.534	0.581	3e-89
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.856	0.688	0.512	1.9e-83
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.871	0.693	0.485	5.8e-82
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.858	0.688	0.486	1.1e-78
ASPGD|ASPL0000052186	484	AN0789 [Emericella nidulans (t	0.629	0.516	0.421	1.1e-52
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.629	0.349	0.417	2.1e-50
CGD|CAL0000380	780	orf19.6979 [Candida albicans (	0.624	0.317	0.385	8.9e-47

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
 Identities = 255/412 (61%), Positives = 298/412 (72%)

Query:     1 MKVRYECCEXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLANSGTPSDRKHAS 60
             M V YECC                 A               VDLEVLA SGTP DR HA+
Sbjct:     1 MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query:    61 KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
             KILPVV+ QHLLLCTLL CNAAAMEALPIFLD+LV AWGAI+ISVTLIL FGEIIPQ+VC
Sbjct:    61 KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query:   121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
             +R+GLAIGA VAPFV++LV IC P+A+P+SKLLD LLG G  ALFRRAELKTLVDLHGNE
Sbjct:   121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query:   181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
             AGKGGELT DETTII GALELSEK A+DAMTP S+TF ID++ KLDR+LM L+L+KGHSR
Sbjct:   181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query:   241 VPV--------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
             VPV              KNLLTI+P++E+ VKNV+IRRIPRV ET+PLYDILNEFQKGHS
Sbjct:   241 VPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHS 300

Query:   287 HMAVVVRHQNDREQPHVPIEHSTDE-REVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDA 345
             HMAVVVR Q D+  P    + + +   EVRVDVD +   +E  LK +RSL+K     + A
Sbjct:   301 HMAVVVR-QCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWKSFPNRA 359

Query:   346 NLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
             N   G S SK WS+D  +++L + + P    + E +AVGIIT+EDVIEELLQ
Sbjct:   360 N-SLG-SRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQ 409

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
 Identities = 249/413 (60%), Positives = 293/413 (70%)

Query:     1 MKVRYECCEXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLANSGTPSDRKHAS 60
             M V Y CC                 A               VDLEVLA SGTP  RK+A+
Sbjct:     1 MAVEYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAA 60

Query:    61 KILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVC 120
             KILPVV+ QHLLL TLL CNAAAME LPIFLD LV AWGAI+ISVTLIL FGEIIPQ++C
Sbjct:    61 KILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSIC 120

Query:   121 ARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHGNE 180
             +RYGLAIGA VAPFV++LV IC P+A+P+SKLLD LLG    ALFRRAELKTLVD HGNE
Sbjct:   121 SRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNE 180

Query:   181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240
             AGKGGELT DETTII GALELSEK  +DAMTP S+ F ID++ KLDR+LM L+LEKGHSR
Sbjct:   181 AGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSR 240

Query:   241 VPV--------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHS 286
             VPV              KNLLTI+P++E+PVKNV+IRRIPRV E +PLYDILNEFQKG S
Sbjct:   241 VPVYYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLS 300

Query:   287 HMAVVVRHQNDREQPHVPIEHSTDEREVRVDVD--GQSHLKEKCLKTKRSLKKRNRLSHD 344
             HMAVVVR Q D+  P +P ++ +  +E RVDVD  G    +E+ L+TKRSL+K     + 
Sbjct:   301 HMAVVVR-QCDKIHP-LPSKNGS-VKEARVDVDSEGTPTPQERMLRTKRSLQKWKSFPNR 357

Query:   345 ANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEELLQ 397
             A+  +G S SK WS+D  +++L +  +P      E EAVGIIT+EDVIEELLQ
Sbjct:   358 ASSFKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQ 410

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 174/305 (57%), Positives = 222/305 (72%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAI 101
             VDLEVL  SG P DR +A KI PVV+ QHLLLCTLL  N+ AMEALPIFLD +VP W AI
Sbjct:    42 VDLEVLIKSGRPQDRINAGKIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAI 101

Query:   102 VISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGN 161
             ++SVTLIL FGEI+PQAVC RYGL +GA +APFV++L+ + FPI++P+SK+LD +LGKG+
Sbjct:   102 LLSVTLILVFGEIMPQAVCTRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGH 161

Query:   162 EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDV 221
               L RRAELKT V+ HGNEAGKGG+LT DET+IITGALEL+EKTA+DAMTP S  F++++
Sbjct:   162 GVLLRRAELKTFVNFHGNEAGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLEL 221

Query:   222 SFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIPR 267
                L+   +  ++  GHSRVPV              KNLL +    EVP++ +S+R+IPR
Sbjct:   222 DTPLNLETLNTIMSVGHSRVPVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPR 281

Query:   268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEK 327
             VSETMPLYDILNEFQKGHSH+AVV +  +++EQ     E+  + R+ +   D     K+ 
Sbjct:   282 VSETMPLYDILNEFQKGHSHIAVVYKDLDEQEQSPETSENGIERRKNKKTKD--ELFKDS 339

Query:   328 CLKTK 332
             C K K
Sbjct:   340 CRKPK 344

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 164/282 (58%), Positives = 216/282 (76%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAI 101
             V+LEV+  +G P DRK+A KILP+V+ QHLLLCTLL  NA AMEALPIF+DSL+PAWGAI
Sbjct:    43 VELEVMIKAGEPHDRKNAEKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAI 102

Query:   102 VISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGN 161
             +ISVTLIL+FGEIIPQAVC+RYGL+IGAK++  V++++ + FP+++P+SKLLDLLLGK +
Sbjct:   103 LISVTLILAFGEIIPQAVCSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRH 162

Query:   162 EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDV 221
               L  RAELK+LV +HGNEAGKGGELT DETTII+GAL++S+K+A+DAMTP S+ F++D+
Sbjct:   163 STLLGRAELKSLVYMHGNEAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDI 222

Query:   222 SFKLDRNLMRLVLEKGHSRVP--------------VKNLLTIHPEDEVPVKNVSIRRIPR 267
             +FKLD   M L+   GHSR+P              VKNL+ + PEDE  ++++ IRR+P+
Sbjct:   223 NFKLDEKTMGLIASAGHSRIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPK 282

Query:   268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHST 309
             V   +PLYDILN FQ G SHMA VV  +N     + P+   +
Sbjct:   283 VDLNLPLYDILNIFQTGRSHMAAVVGTKN-HTNTNTPVHEKS 323

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 190/371 (51%), Positives = 241/371 (64%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAI 101
             V+LE+L  SGTP+++K A+ I PVV++QH LL TLL CNA AME LPI+LD L   + AI
Sbjct:    65 VELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAI 124

Query:   102 VISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGN 161
             ++SVT +L+FGE+IPQA+C RYGLA+GA     V+IL+ +C+PIAFP+ K+LDL+LG  N
Sbjct:   125 ILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVLGH-N 183

Query:   162 EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDV 221
             +ALFRRA+LK LV +H  EAGKGGELT DETTII+GAL+L+EKTA++AMTP   TF++DV
Sbjct:   184 DALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDV 243

Query:   222 SFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIPR 267
             + KLD   M  +L +GHSRVPV              K+LLT+ PE E  V  V IRRIPR
Sbjct:   244 NSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPR 303

Query:   268 VSETMPLYDILNEFQKGHSHMAVVVRHQN-DREQPHVPIEHSTDEREVRVDVDGQSHLKE 326
             V   MPLYDILNEFQKG SHMA VV+ +   +  P   +E  TDE          S L  
Sbjct:   304 VPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDE-------SNDSDLTA 356

Query:   327 KCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGEWEAVGII 386
               L  KR     N +    +   G S  +N     H      +   + +E+GE   +GII
Sbjct:   357 PLL-LKREGNHDNVIV-TIDKANGQSFFQNNESGPHG----FSHTSEAIEDGE--VIGII 408

Query:   387 TLEDVIEELLQ 397
             TLEDV EELLQ
Sbjct:   409 TLEDVFEELLQ 419

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 181/373 (48%), Positives = 248/373 (66%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAI 101
             V+LE+L  SG+ +++K A+ ILPVV++QH LL TLL CNAAAMEALPI LD +   + A+
Sbjct:    63 VELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAV 122

Query:   102 VISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGN 161
             ++SVT +L+FGEIIPQA+C+RYGLA+GA     V+IL+ IC+PIA+P+ K+LD ++G  N
Sbjct:   123 LLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGH-N 181

Query:   162 EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDV 221
             + LFRRA+LK LV +H  EAGKGGELT +ET II+GAL+LS+KTA +AMTP   TF++DV
Sbjct:   182 DTLFRRAQLKALVSIHSQEAGKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDV 241

Query:   222 SFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIPR 267
             + KLD   +  +L +GHSR+PV              K+LLT+  E E PV +VSIR+IPR
Sbjct:   242 NTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPR 301

Query:   268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEK 327
             V   MPLYDILNEFQKG SHMA VV+ ++  ++ ++ +  + +  +  +     S+L   
Sbjct:   302 VPSDMPLYDILNEFQKGSSHMAAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAP 361

Query:   328 CLKTKRSLKKRNRLSHDA--NLHRGASTSKNWSRDFHSEVLHITDDPQRMENGE-WEAVG 384
              LK +         SHD   ++ +     KN  R+F        D P  +E+ E  E +G
Sbjct:   362 LLKHE---------SHDVVVDIDKVPKHVKNRGRNFQQNGTVTRDLPCLLEDNEDAEVIG 412

Query:   385 IITLEDVIEELLQ 397
             IITLEDV EELLQ
Sbjct:   413 IITLEDVFEELLQ 425

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 181/372 (48%), Positives = 239/372 (64%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSLVPAWGAI 101
             V+LE+L  SGTP ++K ++ I PVV++QH LL TLL  NA AME LPI+LD +   + AI
Sbjct:    64 VELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAI 123

Query:   102 VISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGN 161
             ++SVT +L  GE+IPQA+C RYGLA+GA +   V+IL+ + +PI+FP++K+LD +LG  N
Sbjct:   124 ILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGH-N 182

Query:   162 EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDV 221
             + LFRRA+LK LV +HG  AGKGGELT DETTII+GAL+L+EKTA++AMTP   TF++DV
Sbjct:   183 DPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDV 242

Query:   222 SFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIPR 267
             + KLDR  M  +  +GHSRVPV              K+LLT+ PE    V  V IRRIPR
Sbjct:   243 NSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPR 302

Query:   268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEK 327
             V   MPLYDILNEFQKG SHMA VV+ +  + + H    H  +  E  V     S L   
Sbjct:   303 VPANMPLYDILNEFQKGSSHMAAVVKVKG-KSKGHPSTLHEENSGESNVS-SNNSELTAP 360

Query:   328 CLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLH--ITDDPQRMENGEWEAVGI 385
              L     LK+    +HD+ + R     K   + F SE      +   + +E+G+   +GI
Sbjct:   361 LL-----LKREG--NHDSVIVR---IDKANGQSFISEAGRQGFSHTSEEIEDGD--VIGI 408

Query:   386 ITLEDVIEELLQ 397
             ITLEDV EELLQ
Sbjct:   409 ITLEDVFEELLQ 420

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000052186 AN0789 [Emericella nidulans (taxid:162425)]

 Score = 489 (177.2 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 113/268 (42%), Positives = 157/268 (58%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRR-QHLLLCTLLFCNAAAMEALPIFLD-SLVPAWG 99
             V L+VLA SG   ++KHA  +L ++ + +H +L TLL  N    E+LPI LD +L   W 
Sbjct:    73 VHLQVLATSGDGPEQKHARTVLGLISKGKHWVLVTLLLGNVVVNESLPIVLDKTLGGGWP 132

Query:   100 AIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGK 159
             A++ S  LI+ FGEIIPQ+VC RYGL IGA ++P V +L+    P+A+P ++LLD LLG+
Sbjct:   133 AVLGSTVLIVIFGEIIPQSVCVRYGLPIGAYLSPAVLVLMYAFAPVAWPTARLLDYLLGE 192

Query:   160 GNEALFRRAELKTLVDLHGNEAGKGGE-LTRDETTIITGALELSEKTARDAMTPASETFA 218
              +  +++++ LKTLV LH +   +  E LT DE TIIT  L+L  K  R+ MTP    F 
Sbjct:   193 NHGTVYKKSGLKTLVTLHKSLGSQPAERLTEDEVTIITAVLDLKAKPVREIMTPMESVFT 252

Query:   219 IDVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIHPEDEVPVKNVSIR 263
             +  +  LD   M L+L  G SR+PV               K L+T  P+D   VK   + 
Sbjct:   253 MPSNAVLDEKTMELILSAGFSRIPVHAPGNPGDFLGMLLVKTLITYDPDDAKRVKEFVLA 312

Query:   264 RIPRVSETMPLYDILNEFQKGHSHMAVV 291
              +P  S      DILN FQ+GHSHMA+V
Sbjct:   313 TLPETSPDTSCLDILNYFQEGHSHMALV 340

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 484 (175.4 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
 Identities = 112/268 (41%), Positives = 160/268 (59%)

Query:    42 VDLEVLANSG-TPSDRKHASKILPVVRR-QHLLLCTLLFCNAAAMEALPIFLD-SLVPAW 98
             V L+V+  SG +PS+RK+A+ +L +++R +H +L TLL  N    E LPI LD SL   W
Sbjct:    91 VYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGW 150

Query:    99 GAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLG 158
              A++ S  LI+ FGEI+PQ++C RYGL IGA +AP V  L+ +  P+A+PV+KLLD LLG
Sbjct:   151 PAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLG 210

Query:   159 KGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFA 218
             + +  ++++A LKTLV LH      G +L  DE TII+  L+L EK+    MTP  + F 
Sbjct:   211 EDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFT 270

Query:   219 IDVSFKLDRNLMRLVLEKGHSRVP---------------VKNLLTIHPEDEVPVKNVSIR 263
             +     LD   M L+L +G+SR+P               VK L+T  PED  PV + ++ 
Sbjct:   271 MSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSHFALA 330

Query:   264 RIPRVSETMPLYDILNEFQKGHSHMAVV 291
              +P         DI+N FQ+G SHM +V
Sbjct:   331 TLPETRPETSCLDIVNFFQEGKSHMVLV 358

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000380 orf19.6979 [Candida albicans (taxid:5476)]

 Score = 453 (164.5 bits), Expect = 8.9e-47, Sum P(2) = 8.9e-47
 Identities = 103/267 (38%), Positives = 151/267 (56%)

Query:    42 VDLEVLANSGTPSDRKHASKILPVVRR-QHLLLCTLLFCNAAAMEALPIFLDS-LVPAWG 99
             V L+V+A+SG  ++RKHA K+L ++ R +H +L TLL  N    E LPI LD  L   W 
Sbjct:   107 VYLKVIAHSGDSTERKHAKKVLQLIGRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWP 166

Query:   100 AIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGK 159
             A+V S   I+ FGEIIPQ++C RYGL +G+  APFV +L+ I +P+A+P + LLD +LG+
Sbjct:   167 AVVTSTVSIVIFGEIIPQSICVRYGLQVGSLFAPFVLVLMYIMYPVAYPCAMLLDHILGE 226

Query:   160 GNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAI 219
              +  +++++ LKTLV LH     +   L +DE TII+  L+L EK     MTP    + +
Sbjct:   227 DHGTVYKKSGLKTLVTLHKTMGVE--RLNQDEVTIISAVLDLKEKPVSSIMTPMDRVYTM 284

Query:   220 DVSFKLDRNLMRLVLEKGHSRVP---------------VKNLLTIHPEDEVPVKNVSIRR 264
                  LD   +  +   G SR+P               V+ L++  PED +PV +  +  
Sbjct:   285 SADALLDEKTVEEIFNAGFSRIPIHLPNEPTNFIGMLLVRVLISYDPEDALPVASFPLAT 344

Query:   265 IPRVSETMPLYDILNEFQKGHSHMAVV 291
             +P         +ILN FQ+G SHM VV
Sbjct:   345 LPETGLDTSCLNILNYFQEGKSHMIVV 371

GO:0003674 "molecular_function" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQR4	Y2452_ARATH	No assigned EC number	0.6747	0.9924	0.9314	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	2e-44
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	2e-33
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	8e-23
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	6e-17
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	2e-11
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	3e-08
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	3e-05

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  158 bits (403), Expect = 2e-44
 Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 35/310 (11%)

Query: 13  FTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLL 72
              ++++ LL+  +   S     L+S+    LE LA  G       A   L ++ R +  
Sbjct: 4   ILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRY 59

Query: 73  LCTLLFCN-----------AAAMEAL--PIFLDSLVPAWGAIVISVTLILSFGEIIPQAV 119
           L T+                 A+ AL  P+     + A  +  I   L + FGE++P+++
Sbjct: 60  LSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSI 119

Query: 120 CARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKTLVDLHG- 178
             R    +   +AP ++   R+ +P+ + ++++ + +L            L +  +    
Sbjct: 120 AIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELEL 179

Query: 179 -NEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG 237
            +E+ + G L  +E  +I   L+L ++T R+ MTP ++  A+D++  ++  L+ L+LE G
Sbjct: 180 VSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEE-LIELILESG 238

Query: 238 HSRVPV--------------KNLLTIHPEDE-VPVKNVSIRRIPRVSETMPLYDILNEFQ 282
           HSR+PV              K+LL    + +      V +R    V ET+ L D+L EF+
Sbjct: 239 HSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFR 298

Query: 283 KGHSHMAVVV 292
           +  +HMA+VV
Sbjct: 299 EERTHMAIVV 308

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  122 bits (309), Expect = 2e-33
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 20/190 (10%)

Query: 14  TRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLL 73
             ++++ LL+L +   S     L+S+S   LE LA  G       A ++L ++     LL
Sbjct: 1   LLLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEGNKG----ARRLLKLLANPDRLL 56

Query: 74  CTLLFCNAAAMEALPIFLDSLVPAWG--------AIVISVTLILSFGEIIPQAVCARYGL 125
            TLL  N  A   L                    A ++S  LIL FGEI+P+ +  R   
Sbjct: 57  ATLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPE 116

Query: 126 AIGAKVAPFVQILVRICFPIAFPVSKLLDLLLG----KGNEALFRRAELKTLVDLHGNEA 181
            I  ++AP +++L+++ +P+ + +SKL +LLL     K         EL+ LVD    E 
Sbjct: 117 RIALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE- 175

Query: 182 GKGGELTRDE 191
              G +  +E
Sbjct: 176 ---GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 42/309 (13%)

Query: 16  VVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCT 75
           ++ + +L++ +   SG    L +++   L  LA  G   +R  A ++  ++ +   L+ T
Sbjct: 6   IIAIIILIIISAFFSGSETALTALNRYRLRHLAKQG---NRG-AKRVEKLLEKPDRLIGT 61

Query: 76  LLFCN-----AAAMEALPIFLDSLVPAWGAIVISVT--LILSFGEIIPQAVCARYGLAIG 128
           +L  N      A+  A  + +     A  AI   V   +IL F E++P+ + A Y   + 
Sbjct: 62  ILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVA 121

Query: 129 AKVAPFVQILVRICFPIAFPVSKLLDLLL-------GKGNEALFRRAELKTLVDLHGNEA 181
              +  + ILVR+  P+ + ++ +   LL        +    L  + EL+T V+  G+E 
Sbjct: 122 LPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGSE- 180

Query: 182 GKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRV 241
              G + + +  ++ G L+L   T  D M P +E   ID+       ++R +L   H+R+
Sbjct: 181 ---GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPW-EEIVRQLLHSPHTRI 236

Query: 242 PV--------------KNLLTIHPEDEVPVKNVSIRRIPR----VSETMPLYDILNEFQK 283
           P+              ++LL +  E     K   I R       V E  PL D L  FQ+
Sbjct: 237 PLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-EDILRAADEPYFVPEGTPLSDQLVAFQR 295

Query: 284 GHSHMAVVV 292
              H+A+VV
Sbjct: 296 NKKHIALVV 304

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 45/303 (14%)

Query: 21  LLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLL--- 77
           LL+L + L+SG  +   S+S  DL       +  ++     ++ ++ R   LL T+L   
Sbjct: 3   LLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILIAN 58

Query: 78  -FCNAAAMEALPIFLDSLV----PAWGAIVISVT----LILSFGEIIPQAVCARYGLAIG 128
            F N A +       D+L           +I V     LIL FGEI+P+    R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 129 AKVAPFVQILVRICFPIAFP---VSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGG 185
             +A  + IL ++  PI+ P   ++  +    GK         +L   ++L   E     
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSN-ISVDQLSQALELTDEED---- 173

Query: 186 ELTRDETTIITGALELSEKTARDAMTPASETFAIDV--SFKLDRNLMRLVLEKGHSRVPV 243
             T++E  I+ G +       +  M P  + FA+D+  SF     ++  ++E G+SR+PV
Sbjct: 174 -TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS---EIIPKIIENGYSRIPV 229

Query: 244 --------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMA 289
                         K+LL  H   +       +R    V E   L D+L +FQ+  +H+A
Sbjct: 230 YKETIDNITGVLYIKDLLP-HLNKKNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLA 288

Query: 290 VVV 292
           +VV
Sbjct: 289 IVV 291

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 18/95 (18%)

Query: 214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDE--VPV 257
           ++  A+D    L+  L  L+ E GHSR PV              K+LL    E E  + +
Sbjct: 1   TDIVALDADDTLEEIL-ELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDL 59

Query: 258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292
           +++ +R    V E+ PL D+L E +K  SHMA+VV
Sbjct: 60  RDL-LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 24/143 (16%)

Query: 167 RAELKTLV-DLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKL 225
           R EL  L+ D   NE      +  D   ++ G +++++   RD M P S+   +  +  L
Sbjct: 34  REELLELIRDSEQNEL-----IDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTL 88

Query: 226 DRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVP--VKNVSIRRIPRVS 269
           D   + +++E  HSR PV              K+LL     D  P  +K + +R    V 
Sbjct: 89  DE-CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVP 146

Query: 270 ETMPLYDILNEFQKGHSHMAVVV 292
           E+  +  +L EF+   +HMA+V+
Sbjct: 147 ESKRVDRLLKEFRSQRNHMAIVI 169

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 35/148 (23%)

Query: 163 ALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVS 222
           AL R +E   L+D          E TRD   ++ G ++++++  RD M P S+   +  +
Sbjct: 39  ALIRDSEQNDLID----------EDTRD---MLEGVMDIADQRVRDIMIPRSQMITLKRN 85

Query: 223 FKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIPR- 267
             LD  L  +++E  HSR PV              K+LL     D       S+ ++ R 
Sbjct: 86  QTLDECL-DVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAF---SMDKVLRQ 141

Query: 268 ---VSETMPLYDILNEFQKGHSHMAVVV 292
              V E+  +  +L EF+    HMA+V+
Sbjct: 142 AVVVPESKRVDRMLKEFRSQRYHMAIVI 169

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
KOG2118	498	consensus Predicted membrane protein, contains two	100.0
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.96
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.94
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.9
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.13
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.12
COG4109	432	Predicted transcriptional regulator containing CBS	98.88
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.78
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.78
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.49
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.42
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.41
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.37
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.37
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.36
COG2524	294	Predicted transcriptional regulator, contains C-te	98.34
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.34
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.33
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.33
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.33
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.31
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.31
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.3
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.3
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.29
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.27
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.25
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.25
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.22
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.22
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.21
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.21
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.2
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.18
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.18
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.17
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.16
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.15
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.15
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.12
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.12
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.1
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.1
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.09
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.09
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.09
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.08
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.07
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.07
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.06
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.05
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.05
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.05
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.05
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.04
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.03
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.03
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.01
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.01
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.0
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.0
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.0
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.0
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.96
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.94
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.94
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.92
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.91
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.91
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.9
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.85
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.83
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.82
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.8
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.8
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.8
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.79
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.79
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.78
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.76
COG3620	187	Predicted transcriptional regulator with C-termina	97.75
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	97.63
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.63
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.6
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.54
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.39
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.37
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.36
COG0517	117	FOG: CBS domain [General function prediction only]	97.31
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.29
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.13
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.11
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.01
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	96.86
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	96.86
COG3620	187	Predicted transcriptional regulator with C-termina	96.84
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.82
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	96.79
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.77
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	96.74
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	96.67
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.64
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	96.64
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.62
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.62
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	96.62
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.58
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	96.55
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.52
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	96.51
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.51
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.48
COG3448	382	CBS-domain-containing membrane protein [Signal tra	96.46
PRK14869	546	putative manganese-dependent inorganic pyrophospha	96.45
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.43
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.43
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.41
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.41
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.4
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	96.36
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	96.35
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	96.34
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	96.34
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	96.31
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	96.29
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.28
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.28
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.27
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	96.27
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.2
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	96.19
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.18
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.17
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.16
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	96.15
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.14
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	96.14
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.11
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.09
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	96.05
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.99
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	95.98
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	95.96
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	95.89
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	95.8
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	95.76
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	95.76
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	95.73
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	95.61
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	95.6
COG2905	610	Predicted signal-transduction protein containing c	95.54
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	95.53
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	95.48
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	95.37
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	95.31
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	95.3
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	95.28
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	95.26
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	95.22
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	95.08
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.01
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	94.91
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	94.72
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	94.62
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	94.37
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	94.17
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	93.66
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	93.58
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	93.35
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	93.13
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	92.49
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	92.04
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	92.01
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	91.76
PRK14869	546	putative manganese-dependent inorganic pyrophospha	91.61
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	91.42
COG2524	294	Predicted transcriptional regulator, contains C-te	91.37
COG4109	432	Predicted transcriptional regulator containing CBS	91.2
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	90.85
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	90.55
COG2905	610	Predicted signal-transduction protein containing c	90.36
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	90.13
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	88.05
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	87.5
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	86.63
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	84.89
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	83.45
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	80.57
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	80.51

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=2e-57  Score=462.92  Aligned_cols=274  Identities=26%  Similarity=0.434  Sum_probs=240.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh----hH
Q 015949           20 TLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDS----LV   95 (397)
Q Consensus        20 ~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~~~----~~   95 (397)
                      ++|+++||||||+|+|++|+++.+++.++++|++    .|+++++++++|+++|+|+++||+++|++.+.++..    ++
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999999875    377899999999999999999999999876554322    22


Q ss_pred             HH--------HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhh---hcCCCccc
Q 015949           96 PA--------WGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLL---LGKGNEAL  164 (397)
Q Consensus        96 ~~--------~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~l---lg~~~~~~  164 (397)
                      +.        ..+++++|+++++|||++||++|.+||++++++++||+++++++|+|++|+++++++++   +|.++ ..
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~  156 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN  156 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence            21        12345667889999999999999999999999999999999999999999999987765   46543 35


Q ss_pred             ccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-
Q 015949          165 FRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-  243 (397)
Q Consensus       165 ~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-  243 (397)
                      +|+|||+.+++.    +.++| ++++|++|++|+|+|++++|+|+||||.++++++.+++++ ++++.+.++||||+|| 
T Consensus       157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~  230 (408)
T TIGR03520       157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY  230 (408)
T ss_pred             CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence            899999999984    33456 6899999999999999999999999999999999999998 9999999999999999 


Q ss_pred             -------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          244 -------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       244 -------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                   ||++....++..++.++ +|++++||+++++.++|++||+++.|||+|+||||++.|++|.+
T Consensus       231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~e  304 (408)
T TIGR03520       231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLE  304 (408)
T ss_pred             cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHH
Confidence                         77775433334457787 79999999999999999999999999999999999999999995

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=1e-57  Score=465.43  Aligned_cols=271  Identities=21%  Similarity=0.330  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH----hhH---
Q 015949           23 VLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLD----SLV---   95 (397)
Q Consensus        23 i~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~~----~~~---   95 (397)
                      +++||||||+|+|++|+++.+|+.++++|+++    |+++++++++|+++|+|+|+||+++|++.+.+..    .++   
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            57899999999999999999999999999864    7789999999999999999999999887654432    222   


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhh---hcCCC----cccccHH
Q 015949           96 PAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLL---LGKGN----EALFRRA  168 (397)
Q Consensus        96 ~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~l---lg~~~----~~~~s~e  168 (397)
                      +.+.+++++|+++++|||++||++|.+||+++++++++|+++++++|+|++|+++++++.+   +|.++    ...+|+|
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence            2334566788999999999999999999999999999999999999999999998877654   56543    2468999


Q ss_pred             HHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-----
Q 015949          169 ELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-----  243 (397)
Q Consensus       169 EL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-----  243 (397)
                      ||+.+++.+    .  +.++++|++|++|+|+|++++|+|+||||.+|++++.+++++ ++++.+.++|||||||     
T Consensus       158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            999999842    2  259999999999999999999999999999999999999998 9999999999999999     


Q ss_pred             ---------hhhcccCCC-CC---CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          244 ---------KNLLTIHPE-DE---VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       244 ---------kDll~~~~~-~~---~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                               ||++....+ ++   ..+.++ +||+.|||+++++.++|++||+++.|||+|+||||++.|+++.+
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTle  304 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVE  304 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHH
Confidence                     777653221 21   224455 79999999999999999999999999999999999999999995

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-56  Score=433.49  Aligned_cols=284  Identities=24%  Similarity=0.375  Sum_probs=250.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 015949           12 FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFL   91 (397)
Q Consensus        12 ~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~   91 (397)
                      .|..++++++|+++||||||+|+|+++++|.|++.++++|+++    |+++.+++++|+++++++|||||++|++.+.+.
T Consensus         2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala   77 (423)
T COG4536           2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA   77 (423)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence            5788899999999999999999999999999999999999975    889999999999999999999999998765443


Q ss_pred             Hh----hHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhh---hhcCCC
Q 015949           92 DS----LVPA---WGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDL---LLGKGN  161 (397)
Q Consensus        92 ~~----~~~~---~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~---llg~~~  161 (397)
                      ..    +++.   ..|..++|+++++|+|++||++|..||++++..+++++.++.++|+|++|+++++++.   +||.+.
T Consensus        78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~  157 (423)
T COG4536          78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL  157 (423)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            32    3332   2467788999999999999999999999999999999999999999999999998775   467652


Q ss_pred             ----cccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          162 ----EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       162 ----~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                          +...+.|||+.+|+.    ++++|...+++++|+.++|+|++.||+|||+||.+|..++.|++.+ ++++.+.++.
T Consensus       158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~  232 (423)
T COG4536         158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP  232 (423)
T ss_pred             ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence                457899999999994    4455778788999999999999999999999999999999999998 9999999999


Q ss_pred             CCcccc--------------hhhcccCCCCC-C---CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 015949          238 HSRVPV--------------KNLLTIHPEDE-V---PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE  299 (397)
Q Consensus       238 ~SR~PV--------------kDll~~~~~~~-~---~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~  299 (397)
                      |+|+||              ||+++...+.+ .   ++..+ ..+|+|||+++|+.+.|..||+++.|+|+||||||++.
T Consensus       233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~  311 (423)
T COG4536         233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ  311 (423)
T ss_pred             CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence            999999              66666544332 2   23333 58999999999999999999999999999999999999


Q ss_pred             cccccc
Q 015949          300 QPHVPI  305 (397)
Q Consensus       300 g~~~~~  305 (397)
                      |+|+.+
T Consensus       312 GLVTLE  317 (423)
T COG4536         312 GLVTLE  317 (423)
T ss_pred             eeeeHH
Confidence            999996

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=2e-51  Score=421.58  Aligned_cols=283  Identities=27%  Similarity=0.452  Sum_probs=244.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 015949           12 FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFL   91 (397)
Q Consensus        12 ~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~   91 (397)
                      .+..++++++|+++|||||++|+|++|++|.|+++++++|+++    |..++++.++++.+++++++||++++.....+.
T Consensus         3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~   78 (429)
T COG1253           3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAVG   78 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4566788889999999999999999999999999999998754    778999999999999999999999987665443


Q ss_pred             HhhH----HHHH---------HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhh-
Q 015949           92 DSLV----PAWG---------AIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLL-  157 (397)
Q Consensus        92 ~~~~----~~~~---------a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~ll-  157 (397)
                      ...+    ..+.         .++++|+++++|||++||++|.+||++++++.++++++++++++|++|++++++++++ 
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~  158 (429)
T COG1253          79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR  158 (429)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221    1111         1457788999999999999999999999999999999999999999999999988764 


Q ss_pred             --cCC----CcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHH
Q 015949          158 --GKG----NEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMR  231 (397)
Q Consensus       158 --g~~----~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~  231 (397)
                        |.+    +....+++|++ +++    ++.++|.++++|++|++|+|+|++++|+++||||++|++++.+++++ ++.+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~  232 (429)
T COG1253         159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE  232 (429)
T ss_pred             HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence              433    23356788888 776    46678999999999999999999999999999999999999999998 9999


Q ss_pred             HHHhcCCCcccc--------------hhhcccCCCCC--CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecC
Q 015949          232 LVLEKGHSRVPV--------------KNLLTIHPEDE--VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ  295 (397)
Q Consensus       232 ~i~~~g~SR~PV--------------kDll~~~~~~~--~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy  295 (397)
                      .+.++|||||||              ||++.....++  ...... ++|+++|||++++.++|++||+++.|||+|+|||
T Consensus       233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence            999999999999              77777544332  223323 6799999999999999999999999999999999


Q ss_pred             CCcccccccc
Q 015949          296 NDREQPHVPI  305 (397)
Q Consensus       296 G~~~g~~~~~  305 (397)
                      |++.|++|.+
T Consensus       312 G~~~GlVTle  321 (429)
T COG1253         312 GGVEGLVTLE  321 (429)
T ss_pred             CCeEEEeEHH
Confidence            9999999996

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=100.00  E-value=2.4e-44  Score=372.93  Aligned_cols=392  Identities=43%  Similarity=0.584  Sum_probs=324.1

Q ss_pred             CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhH-HHHHHHHHHHhcchhHHHHHHHHH
Q 015949            3 VRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRK-HASKILPVVRRQHLLLCTLLFCNA   81 (397)
Q Consensus         3 ~~~~~~~~~~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~-~a~~il~l~~~~~~lL~tilign~   81 (397)
                      ....||++.++.+..++++|++++|+|||.++++++++-..++.+.+.|+.++++ .++++.+..++.+.+|+|+++||.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            4567999999999999999999999999999999999999999999999998886 788999999999999999999999


Q ss_pred             HHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhhcCC
Q 015949           82 AAMEA-LPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKG  160 (397)
Q Consensus        82 ~a~~~-~~~~~~~~~~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~llg~~  160 (397)
                      +++.+ ++++++..++.|.++.+++..++.||||+||++|.+|+..++..+.|+.++++++++|+.|+++++ ++++|..
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99999 999999888889999999999999999999999999999999999999999999999999999999 8889988


Q ss_pred             CcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCc
Q 015949          161 NEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR  240 (397)
Q Consensus       161 ~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR  240 (397)
                      ....+.+++++.++.+|++|+++ |+++++|..++.+++++.+++++|||||..++++++.+..++++....+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            87888999999999999999887 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------hhhcccC----CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccc
Q 015949          241 VPV--------------KNLLTIH----PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPH  302 (397)
Q Consensus       241 ~PV--------------kDll~~~----~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~  302 (397)
                      |||              ++++.+.    +.+..++.+.++++.+++|+++++.+.+++||+++.|||+|+.. .+..+..
T Consensus       241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~~~~~~~  319 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-HVDIFVL  319 (498)
T ss_pred             eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecC-CcceeeE
Confidence            999              2233333    34567788888999999999999999999999999999999984 4445555


Q ss_pred             ccccCCCCccceeeccCCcchhhHHhhhhhhhhhhhcCCCcc-cccccCCCCCCCccccCCccccccCCCCCCCCCCC-c
Q 015949          303 VPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHD-ANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGE-W  380 (397)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  380 (397)
                      +........+.+....|.+..+.+......+....+...... ..+.+.....++|+...+..+++.+..+.+..+.. +
T Consensus       320 ~l~~~~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (498)
T KOG2118|consen  320 TLEDLEEVVKEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSRKSAFEDLAELGE  399 (498)
T ss_pred             eccchhhhcceeccccccccchhcccchhhcccccccccccchhhhhcccccccccCCCCCccccccccccccccccccc
Confidence            553211112233333333333344333333322222221110 00111334557888888888888887677766544 7


Q ss_pred             ceEEEeehhHHHHHhhC
Q 015949          381 EAVGIITLEDVIEELLQ  397 (397)
Q Consensus       381 e~~giit~edv~eellq  397 (397)
                      ...|++|+||++|+++|
T Consensus       400 ~~~~~~~~~~~~~~~~~  416 (498)
T KOG2118|consen  400 IGHSVLTLESVIEPDES  416 (498)
T ss_pred             cCccceehhhhhccccc
Confidence            78899999999998764

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.96  E-value=1.7e-28  Score=222.91  Aligned_cols=169  Identities=29%  Similarity=0.472  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 015949           15 RVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSL   94 (397)
Q Consensus        15 ~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~~~~   94 (397)
                      ++++++++++++|||||+|+|++++++.+++.++++|++    .++++.++++||+++++|+++||++++.+.+.+....
T Consensus         2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~   77 (183)
T PF01595_consen    2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL   77 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999884    4778999999999999999999999988765443322


Q ss_pred             --------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhh---cCCC--
Q 015949           95 --------VPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLL---GKGN--  161 (397)
Q Consensus        95 --------~~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~ll---g~~~--  161 (397)
                              .+.+.++++.++++++|||++||++|.+||++++.+.+|++++++++++|++++++++.++++   |.+.  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~  157 (183)
T PF01595_consen   78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE  157 (183)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence                    233455667788999999999999999999999999999999999999999999999888664   4443  


Q ss_pred             cccccHHHHHHHHHhhccccccCCCCCHHH
Q 015949          162 EALFRRAELKTLVDLHGNEAGKGGELTRDE  191 (397)
Q Consensus       162 ~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E  191 (397)
                      +..+|+|||+.+++    +++++|.++++|
T Consensus       158 ~~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  158 DPAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             cCCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            45799999999999    456789999876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.9e-27  Score=215.06  Aligned_cols=148  Identities=24%  Similarity=0.414  Sum_probs=131.2

Q ss_pred             hhhHhhhhhcCCCcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHH
Q 015949          149 VSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRN  228 (397)
Q Consensus       149 l~~l~~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e  228 (397)
                      +.+++..+|..++   -+++||-.++.    .+++.+.|+++-..|+++++++.+.+|+|||+||++|++|+.+.+++ +
T Consensus        19 fe~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~   90 (293)
T COG4535          19 FERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E   90 (293)
T ss_pred             HHHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence            4445555554433   47899999997    45677999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHHhcCCCcccc--------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEE
Q 015949          229 LMRLVLEKGHSRVPV--------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV  292 (397)
Q Consensus       229 ~l~~i~~~g~SR~PV--------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVV  292 (397)
                      ++..+.++.||||||              ||||.....  ....++++ +||+.+|||+..+..+|++||.++.|||||+
T Consensus        91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi  169 (293)
T COG4535          91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI  169 (293)
T ss_pred             HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence            999999999999999              888875433  34678888 9999999999999999999999999999999


Q ss_pred             ecCCCcccccccc
Q 015949          293 RHQNDREQPHVPI  305 (397)
Q Consensus       293 DEyG~~~g~~~~~  305 (397)
                      |||||+.|+|+-+
T Consensus       170 DEfGgVsGLVTIE  182 (293)
T COG4535         170 DEFGGVSGLVTIE  182 (293)
T ss_pred             eccCCeeeeEEHH
Confidence            9999999999985

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.90  E-value=5.2e-24  Score=208.57  Aligned_cols=143  Identities=24%  Similarity=0.415  Sum_probs=125.6

Q ss_pred             hhhhcCCCcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHH
Q 015949          154 DLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLV  233 (397)
Q Consensus       154 ~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i  233 (397)
                      .+++|.++   .|++||+.+++    ++.++|.++++|++|++|+|+|++++|+++||||.++++++.+++++ ++++.+
T Consensus        24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i   95 (292)
T PRK15094         24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI   95 (292)
T ss_pred             HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence            34556553   48999999998    35567999999999999999999999999999999999999999998 999999


Q ss_pred             HhcCCCcccc--------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCC
Q 015949          234 LEKGHSRVPV--------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND  297 (397)
Q Consensus       234 ~~~g~SR~PV--------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~  297 (397)
                      .+++||||||              ||++.....  ....+.++ +|++++||+++++.++|+.||+++.|+|+|+||||+
T Consensus        96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~  174 (292)
T PRK15094         96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  174 (292)
T ss_pred             HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence            9999999999              666643221  22347787 799999999999999999999999999999999999


Q ss_pred             cccccccc
Q 015949          298 REQPHVPI  305 (397)
Q Consensus       298 ~~g~~~~~  305 (397)
                      +.|+++..
T Consensus       175 viGiVTle  182 (292)
T PRK15094        175 VSGLVTIE  182 (292)
T ss_pred             EEEEeEHH
Confidence            99999996

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.13  E-value=1.8e-10  Score=119.53  Aligned_cols=131  Identities=16%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             ccccHHHHHHHHHhhccccccCCCCCH-----HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGELTR-----DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l~~-----~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                      ..+|++|+..++...    +..|.|.+     +|.+++++++++++.     |++  ++++++.+.++. ++++.+.+++
T Consensus        43 dtvTe~ema~~ma~~----gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMARE----GGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHhc----CCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            467999999998743    34688884     899999999988765     443  678999999998 9999999999


Q ss_pred             CCcccc--hh-----hccc--------CCCCCCCcccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccc
Q 015949          238 HSRVPV--KN-----LLTI--------HPEDEVPVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQP  301 (397)
Q Consensus       238 ~SR~PV--kD-----ll~~--------~~~~~~~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~  301 (397)
                      |+++||  .+     ++++        ......++.++|. ++++++++++++.++++.|++.+.++++|+|++|...|+
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGi  190 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGL  190 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEE
Confidence            999999  21     2221        1123457888854 289999999999999999999999999999999999999


Q ss_pred             cccc
Q 015949          302 HVPI  305 (397)
Q Consensus       302 ~~~~  305 (397)
                      ++..
T Consensus       191 VT~~  194 (450)
T TIGR01302       191 ITMK  194 (450)
T ss_pred             EEhH
Confidence            9986

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.12  E-value=1.9e-10  Score=119.36  Aligned_cols=133  Identities=13%  Similarity=0.090  Sum_probs=109.4

Q ss_pred             cccHHHHHHHHHhhccccccC------CCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHh--
Q 015949          164 LFRRAELKTLVDLHGNEAGKG------GELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLE--  235 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~------G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~--  235 (397)
                      .++.||+..+++.    ..++      +.++++|++++++++++.+.+|+++|+|  ++.+++.+.+++ ++++.+.+  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            4678999999873    2233      4799999999999999999999999995  788999999998 99999875  


Q ss_pred             -cCCCc--ccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 015949          236 -KGHSR--VPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE  299 (397)
Q Consensus       236 -~g~SR--~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~  299 (397)
                       .++++  +||             +|++..  .++.+++++|.++++.+++++++.++++.|++.+.+.++|||++|...
T Consensus       162 ~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lv  239 (449)
T TIGR00400       162 KTKEDIYTLYVTNESKHLKGVLSIRDLILA--KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLV  239 (449)
T ss_pred             CCccceeEEEEECCCCeEEEEEEHHHHhcC--CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEE
Confidence             23433  343             455543  234578898655677899999999999999999999999999999999


Q ss_pred             cccccc
Q 015949          300 QPHVPI  305 (397)
Q Consensus       300 g~~~~~  305 (397)
                      |+++..
T Consensus       240 GiIt~~  245 (449)
T TIGR00400       240 GIVTVD  245 (449)
T ss_pred             EEEEHH
Confidence            999985

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.88  E-value=3e-09  Score=104.52  Aligned_cols=111  Identities=23%  Similarity=0.252  Sum_probs=99.4

Q ss_pred             HHHHHHhh-----ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC
Q 015949          192 TTIITGAL-----ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED  253 (397)
Q Consensus       192 ~~ii~~~l-----~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~  253 (397)
                      ..||.+++     .-+-.+|.|+|+|..+..+|..+++++ +..++..++|||||||             ||++.  ..+
T Consensus       171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~--~~~  247 (432)
T COG4109         171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLD--KKP  247 (432)
T ss_pred             HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecccceEEEEEEehhhhc--CCC
Confidence            45666655     566789999999999999999999998 9999999999999999             66665  345


Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++..+|.|.|.+|.+.+++..+-+.|-+.+..|.+|+|+.....|+++..
T Consensus       248 ~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~  299 (432)
T COG4109         248 STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQ  299 (432)
T ss_pred             CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHH
Confidence            6789999888999999999999999999999999999999999999999985

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.78  E-value=2.6e-07  Score=89.22  Aligned_cols=135  Identities=17%  Similarity=0.243  Sum_probs=109.2

Q ss_pred             cccHHHHHHHHHhhccccccCCCCCHHHHHHHHH-------hhccccceecccceeCccEEEEeCCCChhHHHHHHHHhc
Q 015949          164 LFRRAELKTLVDLHGNEAGKGGELTRDETTIITG-------ALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEK  236 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~-------~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~  236 (397)
                      .|+.++|...+.-    -+|-=+|+.++-+-+-+       .-.+.+.+..|||++  +|++++.+++++ ++.+++.++
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            5788999888863    23344677776433222       225778899999998  899999999999 999999999


Q ss_pred             CCCcccc-------------hhhcccC-C--------CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949          237 GHSRVPV-------------KNLLTIH-P--------EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH  294 (397)
Q Consensus       237 g~SR~PV-------------kDll~~~-~--------~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE  294 (397)
                      +..-+||             .|+++-. +        -....++.+|..++..|.+++|..+++-.|..++.|..+|+|+
T Consensus       275 ~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~  354 (382)
T COG3448         275 RIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA  354 (382)
T ss_pred             CcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC
Confidence            9999999             5565421 0        1345688886668999999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 015949          295 QNDREQPHVPI  305 (397)
Q Consensus       295 yG~~~g~~~~~  305 (397)
                      .|...|++++.
T Consensus       355 ~g~lvGIvsQt  365 (382)
T COG3448         355 AGKLVGIVSQT  365 (382)
T ss_pred             CCcEEEEeeHH
Confidence            99999999995

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.78  E-value=2.9e-08  Score=104.08  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=107.9

Q ss_pred             ccccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGELT-----RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l~-----~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                      ..+|++||...+..    ++.-|.|.     +++.++++++.++     +++|.+  ++.+++.+.++. ++++.+.+++
T Consensus        50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            46899999999973    44567787     4788999988875     456664  777999999998 9999999999


Q ss_pred             CCcccc-------------hhhcccCCCCCCCcccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccc
Q 015949          238 HSRVPV-------------KNLLTIHPEDEVPVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHV  303 (397)
Q Consensus       238 ~SR~PV-------------kDll~~~~~~~~~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~  303 (397)
                      ++++||             +|++... ....++.++|. ++++++++++++.++++.|++.+.+.++|+|++|...|+++
T Consensus       118 ~~~lpVvd~~g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT  196 (486)
T PRK05567        118 ISGVPVVDENGKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLIT  196 (486)
T ss_pred             CCEEEEEccCCEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Confidence            999999             4554322 23456888855 68899999999999999999999999999999999999998


Q ss_pred             cc
Q 015949          304 PI  305 (397)
Q Consensus       304 ~~  305 (397)
                      ..
T Consensus       197 ~~  198 (486)
T PRK05567        197 VK  198 (486)
T ss_pred             hH
Confidence            75

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.49  E-value=2.6e-07  Score=75.49  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF  281 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f  281 (397)
                      ++.+++.+.++. ++++.+.+++++++||             +|++.....+..++.+++.+++..+++++++.++++.|
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~   81 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKM   81 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHHH
Confidence            466889999998 8999999999999999             45544322233457777668899999999999999999


Q ss_pred             HhCCceEEEEEecCCCcccccccc
Q 015949          282 QKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       282 q~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.+.+.++|+|+.|...|+++..
T Consensus        82 ~~~~~~~~~Vv~~~~~~~G~v~~~  105 (110)
T cd04605          82 ERHNISALPVVDAENRVIGIITSE  105 (110)
T ss_pred             HHhCCCEEeEECCCCcEEEEEEHH
Confidence            999999999999999999998874

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=4.3e-07  Score=74.47  Aligned_cols=89  Identities=16%  Similarity=0.124  Sum_probs=73.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC---CCCcccccccCCcEecCCCCHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED---EVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~---~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      ++..++.+.+++ ++++.+.+++++++||             +|++......   +.++.+++.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEAL   80 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHH
Confidence            466889999998 8999999999999998             4554432211   2457777667889999999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~  106 (111)
T cd04626          81 DIMREKQIGRLPVVDD-NKLIGVVRTK  106 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEhH
Confidence            9999999999999999 9999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=5.3e-07  Score=73.65  Aligned_cols=89  Identities=12%  Similarity=0.103  Sum_probs=73.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCCcccccccCCcEecCCCCHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVPVKNVSIRRIPRVSETMPLYD  276 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~v~~i~~r~~~~Vpe~~~l~~  276 (397)
                      ++.+++.+.++. ++++.+.+.+|+++||             +|++.....     ...++.++|.+++.+++++.++.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   80 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDE   80 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHH
Confidence            467889999998 9999999999999999             455432211     134677886678899999999999


Q ss_pred             HHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          277 ILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       277 lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~  108 (113)
T cd04623          81 AMALMTERRFRHLPVVDG-GKLVGIVSIG  108 (113)
T ss_pred             HHHHHHHcCCCEeEEEeC-CEEEEEEEHH
Confidence            999999999999999998 9999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.1e-06  Score=73.45  Aligned_cols=90  Identities=17%  Similarity=0.200  Sum_probs=71.6

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC-----CCCccc------ccccCCcEecC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED-----EVPVKN------VSIRRIPRVSE  270 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~-----~~~v~~------i~~r~~~~Vpe  270 (397)
                      ++.+++.+.++. ++.+.+.+++++++||             +|++....++     ..++.+      .+.++++++++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP   80 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence            567899999998 9999999999999999             5665432111     111222      22345789999


Q ss_pred             CCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          271 TMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       271 ~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~  115 (120)
T cd04641          81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLS  115 (120)
T ss_pred             CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHH
Confidence            99999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.37  E-value=9.7e-07  Score=73.71  Aligned_cols=90  Identities=14%  Similarity=0.199  Sum_probs=74.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC--------------CCCCcccccccCCcE
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE--------------DEVPVKNVSIRRIPR  267 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~--------------~~~~v~~i~~r~~~~  267 (397)
                      ++.+++.++++. ++.+.+.+++++++||             +|++.....              ...++.+++.+++++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   81 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT   81 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence            567889999998 9999999999999999             444432211              123577776678999


Q ss_pred             ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~  119 (124)
T cd04600          82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQT  119 (124)
T ss_pred             eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhH
Confidence            99999999999999999999999999999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.36  E-value=1.1e-06  Score=71.85  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             ccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHH
Q 015949          214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNE  280 (397)
Q Consensus       214 ~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~  280 (397)
                      .++.+++.+++++ ++.+.+.+.+++++||             +|++..  ....++.+++.+++.+++++.++.++++.
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~--~~~~~v~~~~~~~~~~v~~~~~l~~~~~~   78 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK--DPDTTIEKVMTKNPITVNPKTSVASVAHM   78 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc--cccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence            4678899999998 9999999999999999             334332  13456888866788999999999999999


Q ss_pred             HHhCCceEEEEEecCCCcccccccc
Q 015949          281 FQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       281 fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++.+.+.++|+|+.|...|+++..
T Consensus        79 ~~~~~~~~~~Vv~~~~~~~G~it~~  103 (108)
T cd04596          79 MIWEGIEMLPVVDDNKKLLGIISRQ  103 (108)
T ss_pred             HHHcCCCeeeEEcCCCCEEEEEEHH
Confidence            9999999999999999999998874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.34  E-value=4.2e-07  Score=86.27  Aligned_cols=108  Identities=14%  Similarity=0.223  Sum_probs=93.8

Q ss_pred             HHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC--CCCCCcccc
Q 015949          195 ITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP--EDEVPVKNV  260 (397)
Q Consensus       195 i~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~--~~~~~v~~i  260 (397)
                      +.++..+.+.+|+++|++  +..+++.++|+. |+.+.+.+.|...-||            .|+....+  .....++++
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~  239 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDY  239 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHH
Confidence            345667889999999997  788999999998 9999999999999999            23333222  235779999


Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |.+.++.+.+++.++|+++.|.+.+....+|+|..|...|+++..
T Consensus       240 M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrT  284 (294)
T COG2524         240 MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRT  284 (294)
T ss_pred             hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehH
Confidence            889999999999999999999999999999999999999999884

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.34  E-value=1.2e-06  Score=71.66  Aligned_cols=90  Identities=16%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNE  280 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~  280 (397)
                      ++..++.++++. ++.+.+.+.+++++||            +|++.....  ...++.+++.+++++|+++.++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~   80 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL   80 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence            467788999998 8999999999999998            455543222  1246777766788999999999999999


Q ss_pred             HHhCCceEEEEEecCCCcccccccc
Q 015949          281 FQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       281 fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++.+.+..+|+|++|...|+++..
T Consensus        81 ~~~~~~~~~~V~~~~~~~~G~i~~~  105 (110)
T cd04588          81 MNKHNVGRLIVTDDEGRPVGIITRT  105 (110)
T ss_pred             HHhcCCCEEEEECCCCCEEEEEEhH
Confidence            9999999999999999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.33  E-value=1.8e-06  Score=71.28  Aligned_cols=90  Identities=22%  Similarity=0.304  Sum_probs=75.1

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILN  279 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~  279 (397)
                      ++.+++.+.++. ++.+.+.+++++++||             +|+.....+  ...++.++|..+++.+++++++.++++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~   80 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLR   80 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHH
Confidence            467889999998 8999999999999998             444443222  124688887778899999999999999


Q ss_pred             HHHhCCceEEEEEecCCCcccccccc
Q 015949          280 EFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       280 ~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .|++.+.+..+|+|+.|...|+++..
T Consensus        81 ~m~~~~~~~lpVvd~~~~~~Giit~~  106 (111)
T cd04603          81 IFRETEPPVVAVVDKEGKLVGTIYER  106 (111)
T ss_pred             HHHHcCCCeEEEEcCCCeEEEEEEhH
Confidence            99999999999999889999999873

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.33  E-value=9e-07  Score=72.39  Aligned_cols=90  Identities=17%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++.+++.+++++ ++.+.+.+.+++++||             +|++....+    +..++.+++.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            456889999998 9999999999999999             455432211    1256778867889999999999999


Q ss_pred             HHHHHhCCceEEEEEec-CCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRH-QNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDE-yG~~~g~~~~~  305 (397)
                      ++.|++.+.+.++|+|+ +|...|+++..
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~  109 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRS  109 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhH
Confidence            99999999999999998 99999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.33  E-value=6.9e-07  Score=88.70  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=85.0

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccC
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRR  264 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~  264 (397)
                      ...+|+|+|++..++.+++.++++. ++.+.+.++++..+||             +|+......    ...++.++|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCC
Confidence            6778999999766888999999998 9999999989888787             455432211    245788997788


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++++++.++++.|.+++.+..+|+|+ |...|+++..
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~  318 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMH  318 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhH
Confidence            999999999999999999999999999885 7889999874

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.6e-06  Score=72.16  Aligned_cols=90  Identities=18%  Similarity=0.182  Sum_probs=74.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-------------CCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-------------DEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-------------~~~~v~~i~~r~~~~V  268 (397)
                      ++.+++.++++. ++.+.+.+.+++++||             +|++.....             ...++.+++.++++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v   80 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV   80 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence            456789999998 9999999999999999             344432111             2345777756788999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~  117 (122)
T cd04803          81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRS  117 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHH
Confidence            9999999999999999999999999999999998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.2e-06  Score=73.14  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=73.6

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCCC---------------CCCcccccccCC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPED---------------EVPVKNVSIRRI  265 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~~---------------~~~v~~i~~r~~  265 (397)
                      ++..++.+.++. ++++.+.+.+++++||              +|++....+.               ..++.+++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            467889999998 8999999999999999              3333221111               235777766779


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+++++++.++++.|++.+.+.++|+|++|...|+++..
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~  120 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTER  120 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHH
Confidence            9999999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.30  E-value=1.7e-06  Score=70.57  Aligned_cols=90  Identities=19%  Similarity=0.222  Sum_probs=74.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCC---CCcccccccCCcEecCCCCHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDE---VPVKNVSIRRIPRVSETMPLYDILN  279 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~---~~v~~i~~r~~~~Vpe~~~l~~lL~  279 (397)
                      ++..++.++++. ++.+.+.+.+++++||            +|++.......   .++.+++.++++++++++++.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK   80 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence            456889999998 9999999999999999            45543322211   1456676788999999999999999


Q ss_pred             HHHhCCceEEEEEecCCCcccccccc
Q 015949          280 EFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       280 ~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~V~~~~~~~~G~it~~  106 (111)
T cd04612          81 RMAERDIGRLPVVDDSGRLVGIVSRS  106 (111)
T ss_pred             HHHhCCCCeeeEEcCCCCEEEEEEHH
Confidence            99999999999999999999998873

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.30  E-value=1.8e-06  Score=70.35  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC---CCCCcccccccCCcEecCCCCHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE---DEVPVKNVSIRRIPRVSETMPLYDILN  279 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~---~~~~v~~i~~r~~~~Vpe~~~l~~lL~  279 (397)
                      ++.+++.+.++. ++.+.+.+.+++.+||            +|++.....   ...++.+++.++++++++++++.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~   80 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ   80 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence            456889999998 8999999999999998            455543221   345677876678899999999999999


Q ss_pred             HHHhCCceEEEEEecCCCcccccccc
Q 015949          280 EFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       280 ~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~  106 (111)
T cd04611          81 LMREHGIRHLVVVDDDGELLGLLSQT  106 (111)
T ss_pred             HHHHcCCeEEEEECCCCcEEEEEEhH
Confidence            99999999999999999999998873

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=2.6e-06  Score=71.86  Aligned_cols=90  Identities=14%  Similarity=0.183  Sum_probs=71.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCC----C-------------cccccccC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEV----P-------------VKNVSIRR  264 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~----~-------------v~~i~~r~  264 (397)
                      ++.+++.+.++. ++++.+.+.+++++||             +|++....++..    +             ..+.+.++
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            577899999998 9999999999999999             455443211110    0             11334577


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++++++.++++.|.+.+.+.++|+|++|...|+++..
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~  121 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLT  121 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHH
Confidence            89999999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=2.1e-06  Score=70.96  Aligned_cols=89  Identities=20%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC-C---C-CCCCcccccccCCcEecCCCCHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH-P---E-DEVPVKNVSIRRIPRVSETMPLY  275 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~-~---~-~~~~v~~i~~r~~~~Vpe~~~l~  275 (397)
                      ++.+++.+.++. ++++.+.+++++.+||              +|++... .   . ...++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            567899999998 8999999999999998              2333211 1   1 12467788667889999999999


Q ss_pred             HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~  109 (114)
T cd04630          81 YCARLMERTNIRRAPVVEN-NELIGIISLT  109 (114)
T ss_pred             HHHHHHHHcCCCEeeEeeC-CEEEEEEEHH
Confidence            9999999999999999999 9999998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=2e-06  Score=70.41  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=74.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--CCCCCCcccccccCCcEecCCCCHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--PEDEVPVKNVSIRRIPRVSETMPLYDILN  279 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~  279 (397)
                      +..+++.++++. ++.+.+.+.+++++||             +|++...  .....++.+++.+++++++++.++.++++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~   80 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLR   80 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHH
Confidence            456788999998 8999998899999999             3333321  11234688886788999999999999999


Q ss_pred             HHHhCCceEEEEEecCCCcccccccc
Q 015949          280 EFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       280 ~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~Vv~~~~~~~G~it~~  106 (111)
T cd04639          81 LMQQGGAPAVPVVDGSGRLVGLVTLE  106 (111)
T ss_pred             HHHhcCCceeeEEcCCCCEEEEEEHH
Confidence            99999999999999989999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.25  E-value=2.9e-06  Score=68.75  Aligned_cols=88  Identities=16%  Similarity=0.256  Sum_probs=73.6

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQ  282 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq  282 (397)
                      ++++++.+.+++ ++.+.+.+.+++++||            +|++..  ....++.+++..+++++++++++.++++.|+
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~   79 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--DPDETVEEIMSKDLVVAVPEMDIMDAARVMF   79 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc--CccccHHHhCCCCCeEECCCCCHHHHHHHHH
Confidence            567889999998 8999998889999998            444432  1234577886677899999999999999999


Q ss_pred             hCCceEEEEEecCCCcccccccc
Q 015949          283 KGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       283 ~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+.+.++|+|+.|...|+++..
T Consensus        80 ~~~~~~~~Vv~~~g~~~Gvi~~~  102 (107)
T cd04610          80 RTGISKLPVVDENNNLVGIITNT  102 (107)
T ss_pred             HhCCCeEeEECCCCeEEEEEEHH
Confidence            99999999999999999998874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=3e-06  Score=70.48  Aligned_cols=90  Identities=12%  Similarity=0.134  Sum_probs=73.8

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-------------CCCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-------------EDEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-------------~~~~~v~~i~~r~~~~V  268 (397)
                      ++.+++.+.++. ++.+.+.+.+++++||             +|++....             ....++.+++.++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV   80 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeE
Confidence            567889999998 8999999999999998             45543210             02345666756778999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~  117 (122)
T cd04635          81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRH  117 (122)
T ss_pred             CCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhH
Confidence            9999999999999999999999999999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.22  E-value=2.8e-06  Score=69.45  Aligned_cols=90  Identities=34%  Similarity=0.527  Sum_probs=72.9

Q ss_pred             ccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCCCC--CCcccccccCCcEecCCCCHHHH
Q 015949          214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDE--VPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       214 ~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~~~--~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      +++..++.++++. ++.+.+.+.+++.+||              +|++....++.  .++.++ ++++++++++.++.++
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~   78 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL   78 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence            3678899999998 9999999999999998              22322211111  346665 6889999999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+.++|+|+.|...|+++..
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~  106 (111)
T cd04590          79 LEEMRKERSHMAIVVDEYGGTAGLVTLE  106 (111)
T ss_pred             HHHHHhcCCcEEEEEECCCCEEEEeEHH
Confidence            9999999999999999999999999873

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.21  E-value=2.8e-06  Score=70.18  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCcEecCCCCHHHHH
Q 015949          216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      +..++.++++. ++.+.+.+.+++++||             +|++....+    ...++.+++.++++++++++++.+++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l   81 (115)
T cd04593           3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence            45788999998 8999999999999999             455443211    12347777778899999999999999


Q ss_pred             HHHHhCCceEEEEEecC--CCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQ--NDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEy--G~~~g~~~~~  305 (397)
                      +.|++.+.+.++|+|++  |.+.|+++..
T Consensus        82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~  110 (115)
T cd04593          82 DRMASRGLRQLPVVDRGNPGQVLGLLTRE  110 (115)
T ss_pred             HHHHHcCCceeeEEeCCCCCeEEEEEEhH
Confidence            99999999999999998  8899999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=2.9e-06  Score=72.14  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CC--------------------CCc
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DE--------------------VPV  257 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~--------------------~~v  257 (397)
                      ++.+++.++++. ++++.+.+.+++++||             +|++.....    ..                    .++
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            456889999998 9999999999999999             344432111    11                    167


Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++.++++++++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~  127 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRG  127 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHH
Confidence            7776677899999999999999999999999999999 9999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=3.5e-06  Score=69.03  Aligned_cols=90  Identities=14%  Similarity=0.209  Sum_probs=73.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCcEecCCCCHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      +...++.++++. ++.+.+.+.+++++||             +|++....   ....++.++|.++++.+++++++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   80 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAA   80 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHH
Confidence            345788999998 8999999999999999             44443211   123467777678889999999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|.+.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~~Vv~~~g~~~Gilt~~  107 (112)
T cd04624          81 KLMRKNNIRHHLVVDKGGELVGVISIR  107 (112)
T ss_pred             HHHHHcCccEEEEEcCCCcEEEEEEHH
Confidence            999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.18  E-value=4.9e-06  Score=67.64  Aligned_cols=87  Identities=20%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF  281 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f  281 (397)
                      ++++++.+.++. ++++.+.+.+++++||             ++++..  ....++.+++.+++.++++++++.++++.|
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~--~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~   78 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN--PEEEQLALLMTRDPPTVSPDDDVKEAAKLM   78 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc--cccchHHHHhcCCCceECCCCCHHHHHHHH
Confidence            578899999998 8999999999999999             233221  122456666567889999999999999999


Q ss_pred             HhCCceEEEEEecCCCcccccccc
Q 015949          282 QKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       282 q~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.+.+.++|+|+ |...|+++..
T Consensus        79 ~~~~~~~~~Vvd~-~~~~G~it~~  101 (106)
T cd04638          79 VENNIRRVPVVDD-GKLVGIVTVA  101 (106)
T ss_pred             HHcCCCEEEEEEC-CEEEEEEEHH
Confidence            9999999999995 8888888863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.18  E-value=2.3e-06  Score=84.71  Aligned_cols=102  Identities=14%  Similarity=0.033  Sum_probs=85.6

Q ss_pred             cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCc
Q 015949          203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIP  266 (397)
Q Consensus       203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~  266 (397)
                      ..+|+++|++..++.+++.+.++. ++.+.+.+++.+.+||             +|+.....   ....++.++|.++++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~~  274 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGT  274 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCCE
Confidence            468999999864588999999998 8999999999999998             34443211   234568888777888


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++.++.++++.|.+.+....+|+|+.|...|+++..
T Consensus       275 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~  313 (321)
T PRK11543        275 TLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQ  313 (321)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence            999999999999999999999999999989999999874

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.17  E-value=3.8e-06  Score=69.37  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--------------CCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--------------DEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--------------~~~~v~~i~~r~~~~V  268 (397)
                      ++.+++.+.+++ ++++.+.+.+++++||            +|++.....              ...++.+++.++++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            456889999998 9999999999999999            344432111              1244667766788999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~  117 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITES  117 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHH
Confidence            9999999999999999999999999999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.16  E-value=5.3e-06  Score=66.98  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=72.3

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQ  282 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq  282 (397)
                      ++..++.++++. ++++.+.+.+++++||            +|++...  ...++.+++..+++++++++++.++++.|.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~   78 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--PNRLVADAMTREVVTISPEASLLEAKRLME   78 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc--ccCCHHHHccCCCEEECCCCCHHHHHHHHH
Confidence            456789999998 8999999899999998            3444322  234577776678889999999999999999


Q ss_pred             hCCceEEEEEecCCCcccccccc
Q 015949          283 KGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       283 ~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+...++|+|+ |...|+++..
T Consensus        79 ~~~~~~~~Vv~~-~~~~G~it~~  100 (105)
T cd04599          79 EKKIERLPVLRE-RKLVGIITKG  100 (105)
T ss_pred             HcCCCEeeEEEC-CEEEEEEEHH
Confidence            999999999999 9999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.15  E-value=4.5e-06  Score=71.99  Aligned_cols=89  Identities=15%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC---------------------------CC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE---------------------------DE  254 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~---------------------------~~  254 (397)
                      ++.+++.++++. ++++.+.+.+++++||             +|++.....                           ..
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            467889999998 9999999999999999             455432211                           13


Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++.+++.++++.|++++++.++++.|++++.+.++|+|+ |...|+++..
T Consensus        81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~  130 (135)
T cd04621          81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKT  130 (135)
T ss_pred             ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHH
Confidence            4677886667889999999999999999999999999998 9999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.15  E-value=5.8e-06  Score=67.11  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=74.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF  281 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f  281 (397)
                      ++..++.++++. ++.+.+.+.+++++||             +|++... ....++.++|.++++++++++++.++++.|
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~   80 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-KEAKSLEDIMLEDVFTVQPDASLRDVLGLV   80 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh-hcCCcHhHhhcCCceEECCCCcHHHHHHHH
Confidence            556789999998 8999999999999999             3444321 123567777667889999999999999999


Q ss_pred             HhCCceEEEEEecCCCcccccccc
Q 015949          282 QKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       282 q~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~vv~~~g~~~Gvit~~  104 (109)
T cd04583          81 LKRGPKYVPVVDEDGKLVGLITRS  104 (109)
T ss_pred             HHcCCceeeEECCCCeEEEEEehH
Confidence            999999999999999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=5.2e-06  Score=68.06  Aligned_cols=89  Identities=9%  Similarity=0.087  Sum_probs=73.3

Q ss_pred             EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--CC--CCCCcccccccCCcEecCCCCHHHHH
Q 015949          216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--PE--DEVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      ...++.++++. ++++.+.+.+++++||             +|++...  .+  ...++.++|.+++++++++.++.+++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            35778999998 8999999999999999             4554321  11  23567787667899999999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|++.+.+..+|+|+.|...|+++..
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~  108 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTED  108 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHH
Confidence            999999999999999999999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.12  E-value=3.5e-06  Score=81.08  Aligned_cols=97  Identities=14%  Similarity=0.056  Sum_probs=81.4

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCcE
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIPR  267 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~~  267 (397)
                      .+|+++|.+. ++..++.++++. ++++.+.+.+++.+||             +|++....   ....++.++|.++++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~~  232 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKT  232 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCeE
Confidence            6899999875 277899999998 8999999999999998             44443321   1346788887788889


Q ss_pred             ecCCCCHHHHHHHHHhCCceEEEEEecCCCccccc
Q 015949          268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPH  302 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~  302 (397)
                      |+++.++.++++.|.+.+.+..+|+|+.|...|++
T Consensus       233 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI  267 (268)
T TIGR00393       233 FKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL  267 (268)
T ss_pred             ECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence            99999999999999999999999999989888875

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.10  E-value=5.5e-06  Score=68.27  Aligned_cols=90  Identities=14%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcC-CCcccc-------------hhhcccCCC--CCCCcccccc--cCCcEecCCCCHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKG-HSRVPV-------------KNLLTIHPE--DEVPVKNVSI--RRIPRVSETMPLYD  276 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g-~SR~PV-------------kDll~~~~~--~~~~v~~i~~--r~~~~Vpe~~~l~~  276 (397)
                      ++.+++.+.++. ++.+.+.+.+ ++++||             +|++....+  ...++.++|.  .+++.+++++++.+
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~   80 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAE   80 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHH
Confidence            456889999998 8999887665 889998             455443221  2346777732  23568999999999


Q ss_pred             HHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          277 ILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       277 lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~  109 (114)
T cd04801          81 VLKLLEEQGLDELAVVEDSGQVIGLITEA  109 (114)
T ss_pred             HHHHHHHCCCCeeEEEcCCCcEEEEEecc
Confidence            99999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.10  E-value=5.6e-06  Score=86.70  Aligned_cols=100  Identities=11%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcE
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPR  267 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~  267 (397)
                      ++..+++++|++  +.++++.++++. ++.+.+.+++++.+||             +|+...  ....++.++|.+++++
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~--~~~~~V~diMt~~~it  160 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--DRFTQVRDVMSTDLVT  160 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC--ccCCCHHHhccCCceE
Confidence            456678899985  677999999998 9999999999999999             344332  2335788998889999


Q ss_pred             ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++++.++++.|.+++.+..+|+|+.|...|+++..
T Consensus       161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~  198 (479)
T PRK07807        161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRT  198 (479)
T ss_pred             ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHH
Confidence            99999999999999999999999999999999999985

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.09  E-value=9.5e-06  Score=66.03  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             EEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCC
Q 015949          218 AIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGH  285 (397)
Q Consensus       218 ~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~  285 (397)
                      +++.+.++. ++++.+.+.+++++||            +|++..   ...++.++|.+++++|+++.++.++++.|++.+
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~---~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~   80 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENA---TYGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNK   80 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhh---cccchhhhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence            678899998 8999999999999999            333322   123466776677899999999999999999999


Q ss_pred             ceEEEEEecCCCcccccccc
Q 015949          286 SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       286 ~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+.++|+|+ |...|+++..
T Consensus        81 ~~~~~Vv~~-~~~iGvit~~   99 (104)
T cd04594          81 TRWCPVVDD-GKFKGIVTLD   99 (104)
T ss_pred             cceEEEEEC-CEEEEEEEHH
Confidence            999999985 8999998874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.09  E-value=7.2e-06  Score=67.44  Aligned_cols=88  Identities=17%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----C-----CCCcccccccCCcEecCCC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----D-----EVPVKNVSIRRIPRVSETM  272 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~-----~~~v~~i~~r~~~~Vpe~~  272 (397)
                      ++.+++.++++. ++.+.+.+.+++++||             +|++....+    +     ..++.++|.++++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   80 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence            577899999998 9999999999999999             454432211    0     3467777666789999999


Q ss_pred             CHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          273 PLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       273 ~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.++++.|.+.+  ..+|+|+.|...|+++..
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~  111 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRR  111 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHH
Confidence            9999999998754  578999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.09  E-value=9.7e-06  Score=65.89  Aligned_cols=89  Identities=16%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecC-CCCHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSE-TMPLYDILNE  280 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe-~~~l~~lL~~  280 (397)
                      +...++.+.++. ++.+.+.+.+++++||             +|++... ....++.+++.+++.++.. ++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~   80 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-DLDKPVSEVMTPENLLTTVEGTSLEEALEL   80 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-cCCCCHHHhcccCceEEecCCCCHHHHHHH
Confidence            456889999998 8999999999999999             2333221 2245677775455666666 9999999999


Q ss_pred             HHhCCceEEEEEecCCCcccccccc
Q 015949          281 FQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       281 fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~Vv~~~~~~~Gvi~~~  105 (110)
T cd04601          81 LHEHKIEKLPVVDDEGKLKGLITVK  105 (110)
T ss_pred             HHHhCCCeeeEEcCCCCEEEEEEhh
Confidence            9999999999999999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.08  E-value=7.7e-06  Score=66.96  Aligned_cols=89  Identities=19%  Similarity=0.209  Sum_probs=72.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC----CCCCCcccccccCCcEecCCCCHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP----EDEVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~----~~~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      +...++.+.++. ++++.+.+.+++++||            +|++....    ....++.++|.++++.|++++++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            345788999998 8999999999999998            34443211    123567788667889999999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~  106 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQT  106 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhH
Confidence            9999999999999997 8889998874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=9.9e-06  Score=67.04  Aligned_cols=90  Identities=20%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-----CCCCCCcccccccCCcEecCCCCHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-----PEDEVPVKNVSIRRIPRVSETMPLYD  276 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-----~~~~~~v~~i~~r~~~~Vpe~~~l~~  276 (397)
                      ++..++.++++. ++.+.+.++++..+||             +|++...     .....++.+++.++++.++++.++.+
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   80 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD   80 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence            356788999998 9999999999999998             4544321     11235678886788899999999999


Q ss_pred             HHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          277 ILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       277 lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.|.+.+.+..+|+|+.|...|+++..
T Consensus        81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~  109 (114)
T cd04619          81 VWQVMKQRGLKNIPVVDENARPLGVLNAR  109 (114)
T ss_pred             HHHHHHHcCCCeEEEECCCCcEEEEEEhH
Confidence            99999999999999999989999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.07  E-value=1.1e-05  Score=65.83  Aligned_cols=89  Identities=15%  Similarity=0.119  Sum_probs=73.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhccc-C-C--CCCCCcccccccCCcEecCCCCHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTI-H-P--EDEVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~-~-~--~~~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      ++.+++.+.++. ++.+.+.+.+++++||            +|++.. . .  ....++.+++.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            466789999998 8999999999999999            454431 1 1  123567777678899999999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~  106 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISAT  106 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHH
Confidence            9999999999999998 9999998874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=6.7e-06  Score=67.39  Aligned_cols=89  Identities=13%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC------CCCCCcccccccCCcEecCCCCHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP------EDEVPVKNVSIRRIPRVSETMPLY  275 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~------~~~~~v~~i~~r~~~~Vpe~~~l~  275 (397)
                      ++..++.+.++. ++.+.+.+.+++++||             +|++....      ....++.+++.++++++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV   80 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHH
Confidence            456789999998 8999998889999998             44443211      124567787667889999999999


Q ss_pred             HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~  109 (114)
T cd04629          81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRR  109 (114)
T ss_pred             HHHHHHHHhCCCccCEEEC-CEEEEEEEHH
Confidence            9999999999998999999 9999998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.05  E-value=4.6e-06  Score=89.27  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=83.8

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--C-C-CCCCcccccc
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--P-E-DEVPVKNVSI  262 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~-~-~~~~v~~i~~  262 (397)
                      .++..+|+|+|+|.  ...++.+++++ ++.+.+.+++++++||             +|+.+..  . + +..++.++|.
T Consensus       443 ~L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        443 RLRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HHhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            36778999999974  45789999998 8999999999999999             4554421  1 1 2356788877


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCC--Ccccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN--DREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG--~~~g~~~~~  305 (397)
                      ++++.+++++++.++++.|++.+.+..+|+|+.|  ...|+++..
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~  564 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT  564 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence            7889999999999999999999999889999874  588988874

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.05  E-value=1.3e-05  Score=65.00  Aligned_cols=87  Identities=10%  Similarity=-0.029  Sum_probs=71.1

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF  281 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f  281 (397)
                      ++..++.+.++. ++++.+.+.+++++||             +|++...   ..++.+++.+.+..+++++++.++++.|
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS---GGCCGDHAEPFKVTVSVDDDLRIVLSRM   77 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc---ccchhhhcccCCEEECCCCCHHHHHHHH
Confidence            456788999998 8999999999999998             3444321   2346777545667899999999999999


Q ss_pred             HhCCceEEEEEecCCCcccccccc
Q 015949          282 QKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       282 q~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+.+.+.++|+|+.|...|+++..
T Consensus        78 ~~~~~~~~~Vv~~~~~~~Gvi~~~  101 (106)
T cd04582          78 FAHDMSWLPCVDEDGRYVGEVTQR  101 (106)
T ss_pred             HHCCCCeeeEECCCCcEEEEEEHH
Confidence            999999999999999999998874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.05  E-value=7.9e-06  Score=66.88  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=72.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcc-cC-C--CCC-CCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLT-IH-P--EDE-VPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~-~~-~--~~~-~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++..++.+.+++ ++.+.+.+.+++++||            +|++. .. .  ... .++.+++.++++.++++.++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~   80 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA   80 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence            466788999998 8999999999999998            45542 11 1  111 56778866778899999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|...+.+..+|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~  108 (113)
T cd04587          81 LHLMVQGKFRHLPVVDKSGQVVGLLDVT  108 (113)
T ss_pred             HHHHHHcCCCcccEECCCCCEEEEEEHH
Confidence            9999999998889999989999998873

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=9.3e-06  Score=66.88  Aligned_cols=90  Identities=13%  Similarity=0.252  Sum_probs=71.4

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcC-CCcccc------------hhhcccCCC----CCCCcccccccCCcEecCC--CCHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKG-HSRVPV------------KNLLTIHPE----DEVPVKNVSIRRIPRVSET--MPLY  275 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g-~SR~PV------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~--~~l~  275 (397)
                      ++..++.+.++. ++++.+.+++ +..+||            +|++....+    +..++.+++.++++.++++  .++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            345788999998 8999998888 677887            455442211    1346778866778889887  7999


Q ss_pred             HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~  110 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAE  110 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhH
Confidence            999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.04  E-value=1e-05  Score=66.15  Aligned_cols=89  Identities=16%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNE  280 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~  280 (397)
                      +..+++.+.++. ++.+.+.+.+++++||            +|++.....  ...++.++|.++++.+++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL   81 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence            466889999998 8999999899999998            343322111  2456778867889999999999999999


Q ss_pred             HHhCCceEEEEEecCCCcccccccc
Q 015949          281 FQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       281 fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++.+.+.++|+| .|...|+++..
T Consensus        82 ~~~~~~~~~~V~~-~~~~~Gvvt~~  105 (110)
T cd04595          82 MVEHDIGRVPVVE-DGRLVGIVTRT  105 (110)
T ss_pred             HHHcCCCeeEEEe-CCEEEEEEEhH
Confidence            9999999999999 79999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.03  E-value=8.3e-06  Score=69.61  Aligned_cols=89  Identities=20%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC--------------------------CCCC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP--------------------------EDEV  255 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~--------------------------~~~~  255 (397)
                      ++.+++.++++. ++++.+.++++.++||             +|++....                          ....
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            567889999998 9999999999999999             34432110                          1234


Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.+++.++++.+++++++.++++.|++.+.+..+|+| +|...|+++..
T Consensus        82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~  130 (135)
T cd04586          82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRA  130 (135)
T ss_pred             CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhH
Confidence            57777556789999999999999999999999999999 89999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.03  E-value=1.2e-05  Score=66.21  Aligned_cols=89  Identities=10%  Similarity=0.003  Sum_probs=72.2

Q ss_pred             EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCcEecCCCCHHHHHH
Q 015949          216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIPRVSETMPLYDILN  279 (397)
Q Consensus       216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~~Vpe~~~l~~lL~  279 (397)
                      .++++.++++. ++.+.+.+.++..+||             +|++....   ....++.+++..++..|++++++.++++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   82 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA   82 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence            45788999998 8999998888888988             44443211   1234677885566888999999999999


Q ss_pred             HHHhCCceEEEEEecCCCcccccccc
Q 015949          280 EFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       280 ~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .|++.+.+.++|+|+.|...|+++..
T Consensus        83 ~~~~~~~~~~~Vv~~~~~~~Gvit~~  108 (113)
T cd04607          83 LMRERSIRHLPILDEEGRVVGLATLD  108 (113)
T ss_pred             HHHHCCCCEEEEECCCCCEEEEEEhH
Confidence            99999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=2.1e-05  Score=64.14  Aligned_cols=85  Identities=12%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-h----hhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEE
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-K----NLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMA  289 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-k----Dll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmA  289 (397)
                      ++++++.++++. ++.+.+.+++++.+|| .    .+.+....  ..+... +. +..+.+++++.++++.|.+++.+..
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~--~Dl~~~-~~-~~~v~~~~~l~~a~~~m~~~~~~~l   76 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTI--TDFILI-LR-LVSIHPERSLFDAALLLLKNKIHRL   76 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEH--HHHhhh-ee-eEEeCCCCcHHHHHHHHHHCCCCEe
Confidence            578999999998 9999999999999999 1    13332111  011111 11 6789999999999999999999999


Q ss_pred             EEEecC-CCccccccc
Q 015949          290 VVVRHQ-NDREQPHVP  304 (397)
Q Consensus       290 iVVDEy-G~~~g~~~~  304 (397)
                      +|+|+. |...|+++.
T Consensus        77 pVvd~~~~~~~giit~   92 (98)
T cd04618          77 PVIDPSTGTGLYILTS   92 (98)
T ss_pred             eEEECCCCCceEEeeh
Confidence            999998 889999887

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=9.7e-06  Score=67.94  Aligned_cols=90  Identities=14%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC-CC-CC-----------CCcccccccCCcE
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH-PE-DE-----------VPVKNVSIRRIPR  267 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~-~~-~~-----------~~v~~i~~r~~~~  267 (397)
                      ++..++.++++. ++++.+.+.+++++||              +|++... .. ..           ....+++.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467889999998 8999999999999998              2332211 00 00           0111244577889


Q ss_pred             ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++.++++.|.+.+.+.++|+|++|...|+++..
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~  118 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVT  118 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHH
Confidence            99999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.00  E-value=1.4e-05  Score=65.33  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=72.6

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++..++.++++. ++.+.+.+.+++++||             ++++.....    ...++.++|.++++++++++++.++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   81 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEA   81 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence            455788999998 8999998889999999             333332111    1246888866788999999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+.++|+|+.|...|+++..
T Consensus        82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~  109 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIH  109 (114)
T ss_pred             HHHHHHcCCCEEEEECCCCCEEEEEEHH
Confidence            9999999999999999889999998863

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.00  E-value=1.3e-05  Score=66.45  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=71.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-------------CCCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-------------EDEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-------------~~~~~v~~i~~r~~~~V  268 (397)
                      ++.+++.++++. ++.+.+.+.+++++||             +|++....             ....++.++|.++++++
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i   80 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence            456889999998 8999999999999999             34433211             11345677766788999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~  116 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITET  116 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHH
Confidence            99999999999999999999999998 9999998873

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=6.7e-06  Score=68.49  Aligned_cols=90  Identities=10%  Similarity=0.064  Sum_probs=73.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--------------CCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--------------DEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--------------~~~~v~~i~~r~~~~V  268 (397)
                      ++..++.++++. ++.+.+.+.+++++||            +|++.....              ...++.+++.++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            467889999998 8999999999999999            344321100              1235677766789999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~  117 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWK  117 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHH
Confidence            9999999999999999999999999999999998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=2.1e-05  Score=64.34  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=73.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcc-cCC---C-CCCCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLT-IHP---E-DEVPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~-~~~---~-~~~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++.+++.++++. ++++.+.+.+++.+||            +|++. ...   . ...++.++|.+.+..+++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA   80 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence            466889999998 9999999999999998            44431 111   1 1224778866788999999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~  108 (113)
T cd04622          81 ARLMREHQVRRLPVVDDDGRLVGIVSLG  108 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCcEEEEEEHH
Confidence            9999999999999999999999998874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=1.8e-05  Score=63.49  Aligned_cols=90  Identities=22%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC-C---CCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED-E---VPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~-~---~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++..++.+.+++ ++.+.+.+.+++++||             +|++...... .   ..+.+++.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence            466889999998 9999999999999999             3333322111 1   11445656788999999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~  108 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRS  108 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHH
Confidence            9999999999999999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.94  E-value=1.9e-05  Score=64.03  Aligned_cols=88  Identities=20%  Similarity=0.278  Sum_probs=69.4

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCC----CCCcccccccCCcEecCCCCHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPED----EVPVKNVSIRRIPRVSETMPLYDIL  278 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~----~~~v~~i~~r~~~~Vpe~~~l~~lL  278 (397)
                      ++.+++.++++. ++.+.+.+.+++++||            +|+.....+.    ..++.+++.+++..+++++++.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            456789999998 9999999999999998            4544432111    2457777666788999999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|++ ..+ ++|+|+.|...|+++..
T Consensus        81 ~~~~~-~~~-~~vv~~~~~~~Gvvt~~  105 (110)
T cd04609          81 ELLDR-GNV-AVVVDEGGKFVGIITRA  105 (110)
T ss_pred             HHHHh-CCc-eeEEecCCeEEEEEeHH
Confidence            99999 444 68889999999999873

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.94  E-value=1.6e-05  Score=66.00  Aligned_cols=89  Identities=16%  Similarity=0.222  Sum_probs=72.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--------------CCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--------------DEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--------------~~~~v~~i~~r~~~~V  268 (397)
                      ++..++.++++. ++.+.+.+.+++++||            +|++.....              ...++.++|.++++++
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            456889999998 9999999999999999            344332110              1345666766788999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~  116 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRT  116 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHH
Confidence            99999999999999999999999999 9999998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.92  E-value=2.6e-05  Score=63.77  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccC--C---CCCCCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIH--P---EDEVPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~--~---~~~~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++..++.+.++. ++++.+.+++++++||            +|++...  .   ....++.+++.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA   80 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence            456789999998 8999999999999998            4554321  1   12345777755678899999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+.++|+|+. ...|+++..
T Consensus        81 ~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~  107 (112)
T cd04802          81 AKLMAKHGIKRLPVVDDD-ELVGIVTTT  107 (112)
T ss_pred             HHHHHHcCCCeeEEeeCC-EEEEEEEhh
Confidence            999999999999999985 788888874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.91  E-value=1.8e-05  Score=64.68  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=67.6

Q ss_pred             EeCCCChhHHHHHHHHhcCC-----Ccccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHH
Q 015949          219 IDVSFKLDRNLMRLVLEKGH-----SRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNE  280 (397)
Q Consensus       219 L~~~~tl~~e~l~~i~~~g~-----SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~  280 (397)
                      ++.+.++. ++++.+.++++     ..+||             +|++..  ..+.++.+++.++++.+++++++.++++.
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~--~~~~~v~~~~~~~~~~i~~~~~~~~~~~~   78 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA--DPDTPVSDIMDTDVISVSADDDQEEVARL   78 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--CCcchHHHHhCCCCeEEcCCCCHHHHHHH
Confidence            46788897 89999888884     56787             344432  13456788755678899999999999999


Q ss_pred             HHhCCceEEEEEecCCCcccccccc
Q 015949          281 FQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       281 fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+..+.+.++|+|++|...|+++..
T Consensus        79 ~~~~~~~~~~Vv~~~~~~~Gvit~~  103 (109)
T cd04606          79 FEKYDLLALPVVDEEGRLVGIITVD  103 (109)
T ss_pred             HHHcCCceeeeECCCCcEEEEEEhH
Confidence            9999999999999999999999874

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.91  E-value=2.3e-05  Score=66.02  Aligned_cols=90  Identities=14%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-C----------------CCCCCcccccccC
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-P----------------EDEVPVKNVSIRR  264 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-~----------------~~~~~v~~i~~r~  264 (397)
                      ++.+++.+.++. ++++.+.+.+++.+||             +|++... .                ....++.+++.++
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP   80 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence            466889999998 9999999999999999             3443221 0                0123577776678


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEe--cCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVR--HQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD--EyG~~~g~~~~~  305 (397)
                      ++++++++++.++++.|.+.+.+.++|++  +-|...|+++..
T Consensus        81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~  123 (128)
T cd04632          81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK  123 (128)
T ss_pred             CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhH
Confidence            89999999999999999999988888873  458899999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.90  E-value=2.5e-05  Score=65.04  Aligned_cols=90  Identities=12%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-C---CCCCccccccc--CCcEecCCCCHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-E---DEVPVKNVSIR--RIPRVSETMPLY  275 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-~---~~~~v~~i~~r--~~~~Vpe~~~l~  275 (397)
                      +..+++.+.++. ++.+.+.+++.+.+||             +|++.... +   ...++.++|.+  +++++++++++.
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            456899999998 8999998899999998             33333211 1   13446667443  688999999999


Q ss_pred             HHHHHHHhCCceEEEEEecC---CCcccccccc
Q 015949          276 DILNEFQKGHSHMAVVVRHQ---NDREQPHVPI  305 (397)
Q Consensus       276 ~lL~~fq~~~~hmAiVVDEy---G~~~g~~~~~  305 (397)
                      ++++.|++.+.+..+|+|+.   |...|+++..
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~  113 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKT  113 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhh
Confidence            99999999999999999987   6789999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.85  E-value=1.8e-05  Score=82.09  Aligned_cols=99  Identities=19%  Similarity=0.293  Sum_probs=78.8

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC----CCCCCccccccc
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP----EDEVPVKNVSIR  263 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~----~~~~~v~~i~~r  263 (397)
                      |+..+|+++|.+  ++.+++.++++. ++++.+.+.+++++||             +|++....    ....++.++|.+
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~  408 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK  408 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence            788999999986  577999999998 9999999999999999             44443211    123468888667


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++|++++++.++++.|++.+  .++|+| .|...|+++..
T Consensus       409 ~~~~v~~~~~l~~a~~~~~~~~--~~vV~~-~g~liGvvt~~  447 (454)
T TIGR01137       409 KFIQIGEGEKLSDLSKFLEKNS--SAIVTE-EGKPIGVVTKI  447 (454)
T ss_pred             CCeEECCcCcHHHHHHHHHHCC--eeEEEE-CCEEEEEEEHH
Confidence            7789999999999999998864  455544 58899999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=3.2e-05  Score=63.26  Aligned_cols=89  Identities=9%  Similarity=0.029  Sum_probs=71.1

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC-----CCCCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE-----DEVPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~-----~~~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++..++.+.++. ++.+.+.+.+++++||            +|++....+     ...++.+++.++++.+++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   80 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV   80 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence            567889999998 8999998888888888            455532111     2346788855667899999999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+..+|+|+ |...|+++..
T Consensus        81 ~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~  107 (112)
T cd04625          81 RRLMVERHLRYLPVLDG-GTLLGVISFH  107 (112)
T ss_pred             HHHHHHcCCCeeeEEEC-CEEEEEEEHH
Confidence            99999999999999996 8889998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=3.6e-05  Score=66.72  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC--C----------------------------
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP--E----------------------------  252 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~--~----------------------------  252 (397)
                      ++++++.+.++. ++.+.+.+.+++.+||            +|++....  .                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            467889999998 8999999999999998            45443210  0                            


Q ss_pred             ------CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          253 ------DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 ------~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                            ...++.+++.++++.+++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~  138 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRG  138 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence                  123456666678999999999999999999999999999998 9999998873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.80  E-value=6e-05  Score=79.54  Aligned_cols=134  Identities=13%  Similarity=0.119  Sum_probs=95.7

Q ss_pred             ccccHHHHHHHHHhhccccc-cCCCCCH-HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCc
Q 015949          163 ALFRRAELKTLVDLHGNEAG-KGGELTR-DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR  240 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~-~~G~l~~-~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR  240 (397)
                      ...|+.++-..+...|-=+- ..+ .+. +....++.+.+.     +..|++  +.++++.++++. ++++.+.+++++.
T Consensus        63 ~~vt~~~lA~Ama~aGGiGfI~~~-as~E~q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~  133 (505)
T PLN02274         63 DTVTESDMAIAMAALGGIGIVHYN-NTAEEQAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSS  133 (505)
T ss_pred             cccchHHHHHHHHhCCCeEEEcCC-CCHHHHHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCce
Confidence            35677777666653210000 001 233 335667777754     233664  677999999998 9999999999999


Q ss_pred             ccc-hh------hccc--------CCCCCCCcccccccC--CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccc
Q 015949          241 VPV-KN------LLTI--------HPEDEVPVKNVSIRR--IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHV  303 (397)
Q Consensus       241 ~PV-kD------ll~~--------~~~~~~~v~~i~~r~--~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~  303 (397)
                      +|| .+      ++++        ......++.++|.++  ++.++++.++.++++.|++.+.+..+|+|+.|...|+++
T Consensus       134 lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT  213 (505)
T PLN02274        134 VCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT  213 (505)
T ss_pred             EEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence            998 21      2221        113356788886545  679999999999999999999999999999999999998


Q ss_pred             cc
Q 015949          304 PI  305 (397)
Q Consensus       304 ~~  305 (397)
                      ..
T Consensus       214 r~  215 (505)
T PLN02274        214 RT  215 (505)
T ss_pred             HH
Confidence            85

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.80  E-value=3.9e-05  Score=80.76  Aligned_cols=131  Identities=11%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             ccccHHHHHHHHHhhccccccCCCC----CH-HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGEL----TR-DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l----~~-~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                      +.+|+.++-.-+..+|    --|.|    +. ++.+.+..+-+     +++.|++  +.++++.++++. ++++.+.+++
T Consensus        59 ~~vt~~~ma~a~a~~G----glGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~  126 (495)
T PTZ00314         59 DTVTEHKMAIAMALMG----GIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKG  126 (495)
T ss_pred             cccccHHHHHHHHHCC----CeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcC
Confidence            3567777766665322    11222    22 23455555543     4456764  557999999998 9999999999


Q ss_pred             CCcccc--h-----hhccc--------CCCCCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccc
Q 015949          238 HSRVPV--K-----NLLTI--------HPEDEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQ  300 (397)
Q Consensus       238 ~SR~PV--k-----Dll~~--------~~~~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g  300 (397)
                      ++++||  +     .++++        ......++.++|.+  +++.+++++++.++++.|++.+.+..+|+|+.|...|
T Consensus       127 ~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG  206 (495)
T PTZ00314        127 FSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA  206 (495)
T ss_pred             CcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            999998  2     12221        12234678888654  6889999999999999999999999999999999999


Q ss_pred             ccccc
Q 015949          301 PHVPI  305 (397)
Q Consensus       301 ~~~~~  305 (397)
                      +++..
T Consensus       207 IIT~~  211 (495)
T PTZ00314        207 LVSRS  211 (495)
T ss_pred             EEEeh
Confidence            99986

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.80  E-value=4.5e-05  Score=62.99  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc--h-----hhcccC--------CCCCCCcccccccCCcEecC--CCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K-----NLLTIH--------PEDEVPVKNVSIRRIPRVSE--TMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k-----Dll~~~--------~~~~~~v~~i~~r~~~~Vpe--~~~l~~l  277 (397)
                      +...++.++++. ++++.+.+.+++++||  +     .+++..        .....++.++|.+++..+..  ++++.++
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~   81 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTPREVLVVAPTGITLEEA   81 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCCCceEEECCCCCCHHHH
Confidence            456888999998 8999998889999998  2     123211        11234577775555666755  9999999


Q ss_pred             HHHHHhCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.|++.+.+..+|+|+.|...|+++..
T Consensus        82 l~~~~~~~~~~~pVv~~~~~~~Gvit~~  109 (114)
T cd04602          82 NEILRESKKGKLPIVNDDGELVALVTRS  109 (114)
T ss_pred             HHHHHhcCCCceeEECCCCeEEEEEEHH
Confidence            9999999999999999999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.79  E-value=5e-05  Score=62.36  Aligned_cols=90  Identities=17%  Similarity=0.115  Sum_probs=68.5

Q ss_pred             ccEEEEeCCCChhHHHHHHHHhcCCCcccc--h---h--hcccCCCCCC-C-cccccccCCcEecCCCCHHHHHHHHHhC
Q 015949          214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K---N--LLTIHPEDEV-P-VKNVSIRRIPRVSETMPLYDILNEFQKG  284 (397)
Q Consensus       214 ~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k---D--ll~~~~~~~~-~-v~~i~~r~~~~Vpe~~~l~~lL~~fq~~  284 (397)
                      ++...++.+.+++ ++.+.+.+.+++++||  .   +  +++.....+. . ..++|.++++++++++++.++++.|++.
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~~m~~~~~~v~~~~~l~~~~~~~~~~   80 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKNYIDPSPFTVSPRTSLEKVHQLFRKL   80 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHHhccCCCceECCCCcHHHHHHHHHHc
Confidence            4677899999998 8999999999999999  2   1  2222110000 0 0015567888999999999999999999


Q ss_pred             CceEEEEEecCCCcccccccc
Q 015949          285 HSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       285 ~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+.++|++ .|...|+++..
T Consensus        81 ~~~~~pVv~-~~~~~Gvvt~~  100 (105)
T cd04591          81 GLRHLLVVD-EGRLVGIITRK  100 (105)
T ss_pred             CCCEEEEEE-CCeEEEEEEhh
Confidence            999999985 68899999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.79  E-value=4.3e-05  Score=79.99  Aligned_cols=101  Identities=11%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcE
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPR  267 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~  267 (397)
                      .++..+++++|++  +.++++.++++. ++.+.+.+.+++.+||            +|+...  ....++.++|.+++++
T Consensus        84 ~v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~--~~~~~V~dIMt~~lit  158 (475)
T TIGR01303        84 TVAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV--DRFTQVRDIMSTDLVT  158 (475)
T ss_pred             HHhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC--CCCCCHHHHccCCceE
Confidence            3456778899986  567999999998 9999999999988887            444332  2345789998889999


Q ss_pred             ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++.++++.|++++.+..+|+|+.|...|+++..
T Consensus       159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~  196 (475)
T TIGR01303       159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRT  196 (475)
T ss_pred             eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence            99999999999999999999999999999999999885

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.78  E-value=7.1e-05  Score=60.53  Aligned_cols=85  Identities=7%  Similarity=0.040  Sum_probs=66.9

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccch----hhcccCCCCCCCccccc-ccCCcEecCCCCHHHHHHHHHhCCceEE
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPVK----NLLTIHPEDEVPVKNVS-IRRIPRVSETMPLYDILNEFQKGHSHMA  289 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PVk----Dll~~~~~~~~~v~~i~-~r~~~~Vpe~~~l~~lL~~fq~~~~hmA  289 (397)
                      ++.+++.+.++. ++++.+.+++++.+||.    .+++..     ...++. ...+++++++.++.++++.|++.+.+.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~Giv-----~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l   75 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDDGKLSGII-----TERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQI   75 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCCCCEEEEE-----EHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCee
Confidence            467889999998 89999998999999992    233221     112210 1127899999999999999999999999


Q ss_pred             EEEecCCCcccccccc
Q 015949          290 VVVRHQNDREQPHVPI  305 (397)
Q Consensus       290 iVVDEyG~~~g~~~~~  305 (397)
                      +|+|+-|...|+++..
T Consensus        76 pVv~~~~~~~Giit~~   91 (96)
T cd04614          76 PIINGNDKLIGLLRDH   91 (96)
T ss_pred             eEECCCCcEEEEEEHH
Confidence            9999889999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.76  E-value=4.3e-05  Score=64.44  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc------C----CCCCCCcccccccCCcE--e--
Q 015949          216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI------H----PEDEVPVKNVSIRRIPR--V--  268 (397)
Q Consensus       216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~------~----~~~~~~v~~i~~r~~~~--V--  268 (397)
                      +.+++.++++. ++++.+.++++..+||             +|++..      .    .....++.++|.++...  +  
T Consensus         3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           3 PIVIPADTSID-EALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            56889999998 8999998888889998             444421      0    11234577784333322  2  


Q ss_pred             --cCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          269 --SETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       269 --pe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                        ++++++.++++.|.+++.+.++|+|+- |...|+++..
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~  121 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTS  121 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHH
Confidence              378999999999999999999999984 8899999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.75  E-value=2.9e-05  Score=69.05  Aligned_cols=117  Identities=20%  Similarity=0.245  Sum_probs=85.5

Q ss_pred             cCCCCCHHHH---HHHHHhhc--cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hh
Q 015949          183 KGGELTRDET---TIITGALE--LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KN  245 (397)
Q Consensus       183 ~~G~l~~~E~---~ii~~~l~--l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kD  245 (397)
                      +.|.+++.=.   .|+....+  =...+++.+|+.  +++++.+++++. ++.+++.++|||.+||            .|
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~~k~VGsItE~~  115 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEEDKVVGSITEND  115 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeCCeeeeeecHHH
Confidence            4577776542   22222222  255788999994  899999999998 9999999999999999            33


Q ss_pred             hcccCC---C--CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          246 LLTIHP---E--DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       246 ll~~~~---~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+..-   +  ....++++|-.+.|.|+++.++.-+-+.+..+   =|+.|-|.|.+.|++++.
T Consensus       116 iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~---~AVlV~e~G~~vGIITk~  177 (187)
T COG3620         116 IVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH---PAVLVVENGKVVGIITKA  177 (187)
T ss_pred             HHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC---CeEEEEeCCceEEEEeHH
Confidence            333211   1  24567888777889999999998888777654   344444899999999984

>PF00571 CBS: CBS domain CBS domain web page

Probab=97.63  E-value=4e-05  Score=55.83  Aligned_cols=48  Identities=15%  Similarity=-0.021  Sum_probs=44.2

Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++|.++++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~   49 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRS   49 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHH
Confidence            466677999999999999999999999999999999999999998873

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.63  E-value=7.4e-05  Score=78.77  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             EEEeCCCChhHHHHHHHHhcCCCcccc-h------hhcc---------cCCCCCCCccccccc--CCcEecCCCCHHHHH
Q 015949          217 FAIDVSFKLDRNLMRLVLEKGHSRVPV-K------NLLT---------IHPEDEVPVKNVSIR--RIPRVSETMPLYDIL  278 (397)
Q Consensus       217 ~~L~~~~tl~~e~l~~i~~~g~SR~PV-k------Dll~---------~~~~~~~~v~~i~~r--~~~~Vpe~~~l~~lL  278 (397)
                      .+++.++++. ++++.+.+++++.+|| .      .+++         .....+.++.++|.+  ++++++++.++.+++
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl  186 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN  186 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence            4899999998 9999999999999999 2      1222         111234678898654  677899999999999


Q ss_pred             HHHHhCCceEEEEEecCCCcccccccc
Q 015949          279 NEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.|++++.+..+|+|+.|...|+++..
T Consensus       187 ~lM~e~~i~~LPVVD~~g~LvGIIT~~  213 (502)
T PRK07107        187 DIIWDHKLNTLPIVDKNGNLVYLVFRK  213 (502)
T ss_pred             HHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence            999999999999999999999999985

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.60  E-value=8.8e-05  Score=61.27  Aligned_cols=89  Identities=12%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             EEEEeCCCChhHHHHHHHHhcC-CCcccc------------hhhcccCCC-------CCCCcccccccCCcEecCCCCHH
Q 015949          216 TFAIDVSFKLDRNLMRLVLEKG-HSRVPV------------KNLLTIHPE-------DEVPVKNVSIRRIPRVSETMPLY  275 (397)
Q Consensus       216 v~~L~~~~tl~~e~l~~i~~~g-~SR~PV------------kDll~~~~~-------~~~~v~~i~~r~~~~Vpe~~~l~  275 (397)
                      +.+++.++++. ++++.+.+.+ ++++||            +|++.....       ...++.++|.++++.+++++++.
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~   81 (119)
T cd04598           3 APTVSPDTTVN-DVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLE   81 (119)
T ss_pred             cCccCCCCcHH-HHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHH
Confidence            45678999998 8999988887 889998            454432111       24567888667788999999999


Q ss_pred             HHHHHHHhCCc---eEEEEEecCCCcccccccc
Q 015949          276 DILNEFQKGHS---HMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       276 ~lL~~fq~~~~---hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.|.+.+.   .-++|+|+.|...|+++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~  114 (119)
T cd04598          82 EVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVK  114 (119)
T ss_pred             HHHHHHHcCCcccccccEEEeeCCeEEEEEEHH
Confidence            99999998875   2346889999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.54  E-value=6.4e-05  Score=63.73  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=72.4

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc----CCCCCCCcccccccCCcEecCCCCHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI----HPEDEVPVKNVSIRRIPRVSETMPLYDI  277 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~----~~~~~~~v~~i~~r~~~~Vpe~~~l~~l  277 (397)
                      ++.+++.+.++. ++++.+.+++++.+||             +|++..    ......++.++|.++++.+.++.++.++
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v   81 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKL   81 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHH
Confidence            567899999998 9999999999999999             444431    1224578999988899999999999999


Q ss_pred             HHHHH---------hCCceEEEEEecCCCcccccccc
Q 015949          278 LNEFQ---------KGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       278 L~~fq---------~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+.|.         ..+.+..+|+|+.|...|+++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~  118 (124)
T cd04608          82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKI  118 (124)
T ss_pred             HhhcccCCceEEEeccccccccccccccceEEEEehh
Confidence            98553         33567778889999999999873

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00046  Score=55.70  Aligned_cols=43  Identities=16%  Similarity=0.141  Sum_probs=39.3

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.|++++++.++++.|.+.+...++|+|+.|...|+++..
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~   43 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITER   43 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHH
Confidence            5678999999999999999999989999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.37  E-value=0.00032  Score=60.69  Aligned_cols=82  Identities=16%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCC---CC------------ccccc-----
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDE---VP------------VKNVS-----  261 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~---~~------------v~~i~-----  261 (397)
                      ++..++.++++. ++++.+.+++++.+||             +|++.......   ..            +.+++     
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            567899999998 9999999999999999             55554321110   01            22242     


Q ss_pred             ----ccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCC
Q 015949          262 ----IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND  297 (397)
Q Consensus       262 ----~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~  297 (397)
                          .++++++++++++.++++.|.+++.+-.+|+|+.++
T Consensus        81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~  120 (133)
T cd04592          81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD  120 (133)
T ss_pred             hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence                256889999999999999999999999999998665

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.00073  Score=70.22  Aligned_cols=115  Identities=19%  Similarity=0.153  Sum_probs=99.4

Q ss_pred             CCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCC---Ccccc---------------hhhc
Q 015949          186 ELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGH---SRVPV---------------KNLL  247 (397)
Q Consensus       186 ~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~---SR~PV---------------kDll  247 (397)
                      .++++|++.++..+...+-+|..+||+  +.++++.+-|++ +++..+++.+.   +++.+               ++++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll  190 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL  190 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh
Confidence            378999999999999999999999997  889999999998 99999996554   33333               3444


Q ss_pred             ccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          248 TIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       248 ~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .  .+++.+++++|.+.+.+|+.++..+++-+.|++-+.--+.|||+.|...|.++..
T Consensus       191 ~--a~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiD  246 (451)
T COG2239         191 T--AEPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITID  246 (451)
T ss_pred             c--CCcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHH
Confidence            3  3456779999777889999999999999999999999999999999999999985

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.31  E-value=0.00078  Score=55.14  Aligned_cols=94  Identities=22%  Similarity=0.301  Sum_probs=77.0

Q ss_pred             ccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCC--CC-CcccccccCCcEecCCC
Q 015949          208 DAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPED--EV-PVKNVSIRRIPRVSETM  272 (397)
Q Consensus       208 diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~--~~-~v~~i~~r~~~~Vpe~~  272 (397)
                      ++|.  .+..++..+.++. ++...+.+++++++||            +|++......  .. ++.++|.+++..+.++.
T Consensus         3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~   79 (117)
T COG0517           3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT   79 (117)
T ss_pred             cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCC
Confidence            4455  5788999999998 9999999999999999            3554433211  22 47888666899999999


Q ss_pred             CHHHHHHHHHh-CCceEEEEEecCC-Cccccccc
Q 015949          273 PLYDILNEFQK-GHSHMAVVVRHQN-DREQPHVP  304 (397)
Q Consensus       273 ~l~~lL~~fq~-~~~hmAiVVDEyG-~~~g~~~~  304 (397)
                      ++.++++.|.+ .+.+..+|+|+-+ ...|+++.
T Consensus        80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~  113 (117)
T COG0517          80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITL  113 (117)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEH
Confidence            99999999999 6999999999986 99999886

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.29  E-value=0.00019  Score=70.73  Aligned_cols=53  Identities=11%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             CCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          253 DEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ++..++++|..  ++..+++++++.++++.+++.+....+|+|+. +.+.|++...
T Consensus        65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~k  120 (292)
T PRK15094         65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK  120 (292)
T ss_pred             CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHH
Confidence            45678999533  48999999999999999999998899999875 7899999864

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.13  E-value=0.099  Score=54.27  Aligned_cols=53  Identities=9%  Similarity=0.020  Sum_probs=41.8

Q ss_pred             CCCCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEe-cCCCcccccccc
Q 015949          253 DEVPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVR-HQNDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD-EyG~~~g~~~~~  305 (397)
                      ++.+++++|.  .++.+++.+.+..++.+.+++.+-...+|.| .-..+.|++...
T Consensus       204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~K  259 (429)
T COG1253         204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVK  259 (429)
T ss_pred             CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHH
Confidence            3566777753  4678899999999999999888877888888 667777777664

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.11  E-value=0.00092  Score=55.11  Aligned_cols=42  Identities=10%  Similarity=0.084  Sum_probs=38.3

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+..+++++++.++++.|.+.+.+.++|+|+-|...|+++..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~   43 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKT   43 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehH
Confidence            356789999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.01  E-value=0.0012  Score=55.78  Aligned_cols=43  Identities=9%  Similarity=-0.089  Sum_probs=39.6

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.+++++.++.++++.|++.+....+|+|+.|...|+++..
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~   44 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLG   44 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence            6788999999999999999999988999999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=96.86  E-value=0.00066  Score=55.79  Aligned_cols=42  Identities=19%  Similarity=0.149  Sum_probs=38.4

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~   43 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLP   43 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHH
Confidence            567899999999999999999989999999999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.86  E-value=0.0014  Score=54.60  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ++..+++++++.++++.|.+.+.+.++|+|+- |+..|+++..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~   44 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQR   44 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHH
Confidence            56789999999999999999889999999997 8889999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.84  E-value=0.0013  Score=58.66  Aligned_cols=50  Identities=12%  Similarity=0.106  Sum_probs=45.0

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ...+.+|.+|+.+|.++.++.++++.|+..+..-.+|+++ |.+.|.++.+
T Consensus        65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~  114 (187)
T COG3620          65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITEN  114 (187)
T ss_pred             EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHH
Confidence            3456778889999999999999999999999999999999 9999988875

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.82  E-value=0.00082  Score=54.00  Aligned_cols=42  Identities=10%  Similarity=-0.126  Sum_probs=37.2

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.+++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~Giv~~~   42 (105)
T cd04599           1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED-GKLVGIITSR   42 (105)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEehH
Confidence            46788999999999999999888888999995 8889999885

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=96.79  E-value=0.00054  Score=67.78  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             CCcccccccC--CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949          255 VPVKNVSIRR--IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP  304 (397)
Q Consensus       255 ~~v~~i~~r~--~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~  304 (397)
                      .+++++|.++  ++.+++++++.++.+.|++.+...++|+|+.|...|+++.
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~  248 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTD  248 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecH
Confidence            5688887676  8999999999999999999888899999999999999985

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.77  E-value=0.0013  Score=53.60  Aligned_cols=42  Identities=12%  Similarity=0.017  Sum_probs=37.7

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.++++.++.++++.|.+.+...++|+|+ |+..|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~   42 (111)
T cd04589           1 RPPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRT   42 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHH
Confidence            46778999999999999999988888999999 9999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.74  E-value=0.0034  Score=52.08  Aligned_cols=43  Identities=14%  Similarity=0.200  Sum_probs=39.2

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++..+++++++.++++.|.+.+.+.++|+|+-|...|+++..
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~   43 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRF   43 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHH
Confidence            3678899999999999999999999999999989999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.67  E-value=0.0015  Score=53.04  Aligned_cols=43  Identities=12%  Similarity=-0.074  Sum_probs=38.7

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++..++.+.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~   44 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSK   44 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHH
Confidence            4678899999999999999998888899999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.64  E-value=0.0033  Score=52.73  Aligned_cols=42  Identities=10%  Similarity=0.063  Sum_probs=38.1

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++..+++++++.++++.|.+++...++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~   43 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISAS   43 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHH
Confidence            467899999999999999999888999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.64  E-value=0.0013  Score=52.95  Aligned_cols=43  Identities=16%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~   43 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRR   43 (106)
T ss_pred             CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHH
Confidence            3678999999999999999999988899999999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.62  E-value=0.0013  Score=70.63  Aligned_cols=52  Identities=12%  Similarity=0.027  Sum_probs=46.5

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.++++.+++++++.++++.|++.+....+|+|+.|...|+++..
T Consensus       446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~  497 (574)
T PRK01862        446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALK  497 (574)
T ss_pred             hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHH
Confidence            3568888777889999999999999999999988999999999999999874

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.62  E-value=0.00093  Score=54.43  Aligned_cols=43  Identities=12%  Similarity=0.044  Sum_probs=38.6

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++.+.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~   43 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTER   43 (112)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHH
Confidence            4678899999999999999998888899999989999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.62  E-value=0.0013  Score=53.65  Aligned_cols=42  Identities=10%  Similarity=-0.012  Sum_probs=38.2

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.++++.++.++++.|.+++.+.++|+|+ |...|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~   42 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDR   42 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhH
Confidence            56788999999999999999998899999999 9999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.58  E-value=0.0047  Score=50.47  Aligned_cols=42  Identities=14%  Similarity=0.034  Sum_probs=38.5

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~   43 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLT   43 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHH
Confidence            567899999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=96.55  E-value=0.0019  Score=52.99  Aligned_cols=42  Identities=17%  Similarity=0.110  Sum_probs=37.7

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~   43 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLS   43 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence            356889999999999999998888999999999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.52  E-value=0.0023  Score=66.47  Aligned_cols=52  Identities=13%  Similarity=0.020  Sum_probs=46.4

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~  385 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLR  385 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence            3568888778899999999999999999998888899999989999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=96.51  E-value=0.002  Score=51.84  Aligned_cols=42  Identities=14%  Similarity=0.048  Sum_probs=36.7

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++.+.++.++++.|++.+.+..+|+|+ |...|+++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~   43 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSAR   43 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHH
Confidence            56788999999999999999888777888898 8889999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.51  E-value=0.0015  Score=52.75  Aligned_cols=41  Identities=7%  Similarity=-0.040  Sum_probs=37.3

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++++.++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~   42 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDES   42 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHH
Confidence            5678999999999999999999999999999 9999999974

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.48  E-value=0.0022  Score=52.05  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=39.2

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.++++.++.++++.|++.+...++|+|+.|...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~   43 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLD   43 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHH
Confidence            6788999999999999999998888899999989999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=96.46  E-value=0.0027  Score=61.93  Aligned_cols=52  Identities=12%  Similarity=0.052  Sum_probs=48.1

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..-.++|.|++..|+++++++++.+.||+++..-..|+||.....|+|+..
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~  295 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQR  295 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHH
Confidence            3445778899999999999999999999999999999999999999999985

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=96.45  E-value=0.0053  Score=65.44  Aligned_cols=50  Identities=16%  Similarity=0.068  Sum_probs=44.8

Q ss_pred             Ccccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.++|. ++++++++++++.++.+.|.+.+.+..+|+|+.|...|+++..
T Consensus       247 ~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~  297 (546)
T PRK14869        247 PVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY  297 (546)
T ss_pred             CHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence            5566655 6789999999999999999999999999999999999999975

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.43  E-value=0.0031  Score=50.99  Aligned_cols=42  Identities=10%  Similarity=-0.035  Sum_probs=37.5

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.+.++.++.++++.|++.+....+|+|+ |...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~   42 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLA   42 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHH
Confidence            46788999999999999999988888889999 9999999974

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.43  E-value=0.0046  Score=49.80  Aligned_cols=43  Identities=9%  Similarity=0.024  Sum_probs=38.7

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++..++++.++.++++.|.+.+...++|+|+.|...|+++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~   44 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLE   44 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHH
Confidence            5678899999999999999998888899999989999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.41  E-value=0.0033  Score=50.93  Aligned_cols=43  Identities=12%  Similarity=0.050  Sum_probs=39.1

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~   44 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSW   44 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHH
Confidence            6788999999999999999998888888999989999999974

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=96.41  E-value=0.0031  Score=51.20  Aligned_cols=42  Identities=7%  Similarity=-0.104  Sum_probs=37.6

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++.+.++.++.+.|++.+...++|+|+ |...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~   43 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRR   43 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHH
Confidence            57789999999999999999888788899999 9989999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.40  E-value=0.005  Score=65.30  Aligned_cols=103  Identities=19%  Similarity=0.156  Sum_probs=80.4

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------------hhhcc-------------
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------------KNLLT-------------  248 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------------kDll~-------------  248 (397)
                      .+++.+|+|+|.+  .+++++.-++++ .+.+.+..+.|.-|||                  +.++.             
T Consensus       578 ~mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  578 YMRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             HhhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            3577899999998  899999999998 8999999999999999                  00000             


Q ss_pred             --------------cCC---------------CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 015949          249 --------------IHP---------------EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE  299 (397)
Q Consensus       249 --------------~~~---------------~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~  299 (397)
                                    ..+               +--.++..+|-..|++||++|++..++..||+=..+-.+||+.-.++.
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~  734 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV  734 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence                          000               001344455434678999999999999999998888888888888889


Q ss_pred             cccccc
Q 015949          300 QPHVPI  305 (397)
Q Consensus       300 g~~~~~  305 (397)
                      |+.+..
T Consensus       735 gilTR~  740 (762)
T KOG0474|consen  735 GILTRK  740 (762)
T ss_pred             EEEehh
Confidence            998884

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.36  E-value=0.0067  Score=48.22  Aligned_cols=42  Identities=12%  Similarity=-0.067  Sum_probs=38.0

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.+.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~   43 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER   43 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHH
Confidence            567899999999999999999888999999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.35  E-value=0.0073  Score=49.38  Aligned_cols=42  Identities=17%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCC-ceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGH-SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~-~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++.+.++.++++.|.+.+ ....+|+| .|...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~   43 (115)
T cd04620           1 RHPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTER   43 (115)
T ss_pred             CCCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHH
Confidence            46778999999999999998877 55666666 48899999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=96.34  E-value=0.003  Score=65.87  Aligned_cols=53  Identities=6%  Similarity=-0.028  Sum_probs=44.4

Q ss_pred             CCCCcccccccCCcEecCCCCHHHHHHHHHh-----CCceEEEEEecCCCcccccccc
Q 015949          253 DEVPVKNVSIRRIPRVSETMPLYDILNEFQK-----GHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~-----~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.+++++|.+++..+++++++.++++.|++     ...+..+|+|+.|...|+++..
T Consensus       129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~  186 (449)
T TIGR00400       129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR  186 (449)
T ss_pred             CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH
Confidence            3456888877888999999999999999986     3456788899999999999874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=96.34  E-value=0.0032  Score=51.58  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=37.4

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCC-ceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGH-SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~-~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.+.+++++++.++++.|.++. ...++|+|+.|...|+++..
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~   44 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLA   44 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHH
Confidence            46788999999999999997664 77899999999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.31  E-value=0.0031  Score=51.71  Aligned_cols=42  Identities=12%  Similarity=0.029  Sum_probs=37.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.++.++++.|++.+.+..+|+|+ |...|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~   42 (122)
T cd04585           1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDR   42 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHH
Confidence            36778999999999999999998888899999 9999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.29  E-value=0.007  Score=48.97  Aligned_cols=43  Identities=12%  Similarity=0.016  Sum_probs=38.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++..++++.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus         1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~   43 (113)
T cd04623           1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSER   43 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehH
Confidence            4567899999999999999999889999999999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.28  E-value=0.0053  Score=50.71  Aligned_cols=43  Identities=9%  Similarity=-0.023  Sum_probs=38.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++..++.++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~   43 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRR   43 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcH
Confidence            4677899999999999999988888899999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.28  E-value=0.011  Score=47.94  Aligned_cols=42  Identities=10%  Similarity=-0.046  Sum_probs=37.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.++.+.++.++.+.|.+.+.+.++|+|+ |...|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~   42 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDR   42 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhH
Confidence            56788999999999999999888888999999 9999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.27  E-value=0.0045  Score=49.96  Aligned_cols=43  Identities=14%  Similarity=-0.063  Sum_probs=38.9

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++..++.+.++.++++.|.+.+..-++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~   44 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNR   44 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhh
Confidence            6788999999999999999988888889999989999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.27  E-value=0.012  Score=48.58  Aligned_cols=42  Identities=14%  Similarity=0.015  Sum_probs=38.3

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~   43 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQR   43 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHH
Confidence            567899999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.20  E-value=0.0078  Score=62.86  Aligned_cols=50  Identities=14%  Similarity=0.014  Sum_probs=44.1

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecC---CCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ---NDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy---G~~~g~~~~~  305 (397)
                      .+.+.+.+++..+++++++.++++.|++.+...++|+|+.   |...|+++..
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~r  133 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKR  133 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHH
Confidence            3455667899999999999999999999999999999987   7899999974

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.19  E-value=0.0073  Score=48.98  Aligned_cols=42  Identities=7%  Similarity=0.041  Sum_probs=37.6

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      .+..+++++++.++.+.|++.+.+-++|+|+. |...|+++..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~   44 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTIT   44 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHH
Confidence            35689999999999999999999999999985 7899999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.18  E-value=0.0058  Score=50.19  Aligned_cols=43  Identities=12%  Similarity=-0.085  Sum_probs=37.3

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      .++..+++++++.++++.|++.+...++|+|+   .|...|+++..
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~   47 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSR   47 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhH
Confidence            35678999999999999999888888999998   68889998863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.17  E-value=0.0025  Score=51.59  Aligned_cols=41  Identities=12%  Similarity=0.038  Sum_probs=36.7

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~   42 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTER   42 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHH
Confidence            4678999999999999999988889999998 8889999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.16  E-value=0.0057  Score=49.61  Aligned_cols=42  Identities=12%  Similarity=-0.031  Sum_probs=36.7

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ++..++++.++.++++.|.+.+....+|+|+- |...|+++..
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~   44 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVK   44 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHH
Confidence            45789999999999999999887788888887 8999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.15  E-value=0.017  Score=47.32  Aligned_cols=43  Identities=9%  Similarity=0.034  Sum_probs=38.3

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ++++.+++++++.++++.|++.+.+.++|+|+. |+..|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~   44 (114)
T cd04630           1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMR   44 (114)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehH
Confidence            356789999999999999999888889999986 8999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.14  E-value=0.0052  Score=50.53  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=37.3

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCC-ceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGH-SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~-~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.+++++++.++++.|+..+ .+.++|+|+ |...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~   43 (119)
T cd04598           1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMRE   43 (119)
T ss_pred             CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHH
Confidence            57788999999999999998876 778999999 9999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=96.14  E-value=0.0062  Score=50.43  Aligned_cols=43  Identities=12%  Similarity=0.028  Sum_probs=38.9

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.++.++.+.|.+.+.+.++|+|+-|...|+++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~   44 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQR   44 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHH
Confidence            5788999999999999999998888899999889999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.11  E-value=0.014  Score=49.42  Aligned_cols=43  Identities=12%  Similarity=-0.045  Sum_probs=39.0

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.++.++++.|.+.+.+.++|+|+-|...|+++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~   44 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEG   44 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHH
Confidence            5678899999999999999999999999999989999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.09  E-value=0.0045  Score=50.17  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=37.4

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++..++.+.++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~   42 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLS   42 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHH
Confidence            46778999999999999999988888999999 9989999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=96.05  E-value=0.0042  Score=50.79  Aligned_cols=41  Identities=17%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..++++.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~   44 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDG   44 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcH
Confidence            45789999999999999999888999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.99  E-value=0.0061  Score=64.09  Aligned_cols=51  Identities=16%  Similarity=0.073  Sum_probs=45.7

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++.++|.+++.++++++++.++++.|++.+...++|+|+.|...|+++..
T Consensus        89 VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~r  139 (479)
T PRK07807         89 VKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEA  139 (479)
T ss_pred             cccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHH
Confidence            345677789999999999999999999999999999999999999999863

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.98  E-value=0.0034  Score=53.90  Aligned_cols=42  Identities=17%  Similarity=0.164  Sum_probs=38.4

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++++.++.++++.|++.+..-++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~   43 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYR   43 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHH
Confidence            467899999999999999999888899999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.96  E-value=0.0046  Score=50.30  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++++.++.++++.|.+.+.+..+|+|+-|...|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~   43 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFT   43 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehH
Confidence            567899999999999999988888899999989999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.89  E-value=0.0061  Score=49.60  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=38.5

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+++.++++.++.++++.|.+.+....+|+|+.|...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~   43 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQ   43 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehH
Confidence            5678899999999999999988877888999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.80  E-value=0.0062  Score=50.21  Aligned_cols=41  Identities=7%  Similarity=-0.141  Sum_probs=37.0

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.+.++.++++.|++++.+..+|+|+ |...|+++..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~   42 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEK   42 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchH
Confidence            5678999999999999999998888899998 9999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.76  E-value=0.014  Score=47.44  Aligned_cols=42  Identities=12%  Similarity=-0.020  Sum_probs=38.3

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.++++.++++.|.+.+...++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~   43 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRY   43 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHH
Confidence            577899999999999999999888999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.76  E-value=0.004  Score=52.63  Aligned_cols=43  Identities=14%  Similarity=0.072  Sum_probs=38.0

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.+.++.++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus         1 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~   43 (132)
T cd04636           1 KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEG   43 (132)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHH
Confidence            3577899999999999999988888889999989999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.73  E-value=0.0079  Score=49.86  Aligned_cols=43  Identities=12%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      +++..++++.++.++++.|.+.+.+-++|+|+- |...|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~   44 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITAT   44 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHH
Confidence            357789999999999999999888888999987 9999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.61  E-value=0.014  Score=47.24  Aligned_cols=42  Identities=14%  Similarity=0.000  Sum_probs=36.8

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++..|.++.++.++++.|.+.+...++|+|+-|...|+++..
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~   43 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRD   43 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHH
Confidence            466789999999999999988877888999989999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=95.60  E-value=0.026  Score=45.76  Aligned_cols=41  Identities=12%  Similarity=0.066  Sum_probs=36.5

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++++.++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~   42 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSK   42 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhH
Confidence            5678999999999999999888888999998 9999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=95.54  E-value=0.017  Score=60.85  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=80.8

Q ss_pred             cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc----CCCCCCCcccccccCC
Q 015949          203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI----HPEDEVPVKNVSIRRI  265 (397)
Q Consensus       203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~----~~~~~~~v~~i~~r~~  265 (397)
                      -+++.++|+-  ..++++..+++. ++...+.+.|-|-+-|             ||+...    ......++.++|..|+
T Consensus       148 ~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~  224 (610)
T COG2905         148 LTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPV  224 (610)
T ss_pred             HHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCc
Confidence            3456777774  456899999998 8999999999994444             666542    2234678999988999


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..|..+..+++++-.|-++++|-.+|.++ |.+.|+++-+
T Consensus       225 ~svd~~~~~feAml~m~r~~I~hl~V~e~-gq~~Gilt~~  263 (610)
T COG2905         225 ISVDRGDFLFEAMLMMLRNRIKHLPVTED-GQPLGILTLT  263 (610)
T ss_pred             eeecCcchHHHHHHHHHHhCCceeeeecC-CeeeEEeeHH
Confidence            99999999999999999999999988665 9999999875

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=95.53  E-value=0.025  Score=57.83  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             ccceecccceeCc-cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCC-----CC-cccc-
Q 015949          202 SEKTARDAMTPAS-ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDE-----VP-VKNV-  260 (397)
Q Consensus       202 ~~~~V~diMtPr~-~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~-----~~-v~~i-  260 (397)
                      -.++..|.=.+-- ++..+..+.++- ++++.+...+.|-+||             .|+.....+..     .. ++.. 
T Consensus       224 l~~s~~dl~ig~~~~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~  302 (381)
T KOG1764|consen  224 LSKSLSDLGIGTWSNIASISEDTPVI-EALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEAL  302 (381)
T ss_pred             hhCCHHHhCcchhhhheeecCCCcHH-HHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHh
Confidence            3445555544333 589999999998 9999999999999999             23332211111     11 1111 


Q ss_pred             cc-----cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SI-----RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~-----r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..     -+++.+..+-++..++++|.+++.|.+.|||+.|...|+++-.
T Consensus       303 ~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLs  352 (381)
T KOG1764|consen  303 SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLS  352 (381)
T ss_pred             hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHH
Confidence            01     2357788999999999999999999999999999999999984

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=95.48  E-value=0.013  Score=47.32  Aligned_cols=39  Identities=13%  Similarity=-0.036  Sum_probs=35.5

Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~   42 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLK   42 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHH
Confidence            47899999999999999999899999999 9999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=95.37  E-value=0.013  Score=47.51  Aligned_cols=38  Identities=13%  Similarity=0.009  Sum_probs=31.8

Q ss_pred             ecCCCCHHHHHHHHHhCC-----ceEEEEEecCCCcccccccc
Q 015949          268 VSETMPLYDILNEFQKGH-----SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~-----~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++++.++++.|++.+     ...++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~   44 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLR   44 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHH
Confidence            578899999999998766     35678899889999999874

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=95.31  E-value=0.012  Score=62.05  Aligned_cols=49  Identities=10%  Similarity=-0.065  Sum_probs=45.0

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.++|.+++.+++++.++.++++.|++.+.+-++|+|+.|...|+++..
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~  137 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNR  137 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHH
Confidence            5666778999999999999999999999999999999999999999974

>PF00571 CBS: CBS domain CBS domain web page

Probab=95.30  E-value=0.011  Score=42.73  Aligned_cols=35  Identities=29%  Similarity=0.519  Sum_probs=33.0

Q ss_pred             ecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949          206 ARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV  243 (397)
Q Consensus       206 V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV  243 (397)
                      |+++|+|  ++.+++.++++. ++++.+.+++++++||
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V   35 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPV   35 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEE
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEE
Confidence            5789998  888999999998 9999999999999999

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=95.28  E-value=0.018  Score=38.55  Aligned_cols=41  Identities=15%  Similarity=0.041  Sum_probs=36.8

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP  304 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~  304 (397)
                      +++++++++++.++++.|++.+.+.++|+|+.|...|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~   41 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTR   41 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence            45789999999999999999999999999988888888876

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=95.26  E-value=0.018  Score=47.98  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=45.6

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++.++|.+++.++++++++.++++.|++.+.+..+|+|+-|...|+++..
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~  108 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLL  108 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence            457888778899999999999999999999989999999989999998873

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=95.22  E-value=0.03  Score=57.26  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             ceeCccEEEEeCCCChhHHHHHHHHhcCCCcccchh--------------hcccC--CCC--------CCCcccc---cc
Q 015949          210 MTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKN--------------LLTIH--PED--------EVPVKNV---SI  262 (397)
Q Consensus       210 MtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PVkD--------------ll~~~--~~~--------~~~v~~i---~~  262 (397)
                      ++++...+++.+..++- ++...+.++++.|+||-|              ++...  ...        ..++.++   +.
T Consensus       158 ~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~  236 (381)
T KOG1764|consen  158 ETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTW  236 (381)
T ss_pred             cccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchh
Confidence            45555657777777775 788889999999999911              11110  000        1122222   13


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+..+.+++|+.++++.|..++..=.+|||++|+..|..+..
T Consensus       237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~  279 (381)
T KOG1764|consen  237 SNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRF  279 (381)
T ss_pred             hhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehh
Confidence            4578999999999999999999999999999999998877774

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.08  E-value=0.025  Score=46.66  Aligned_cols=41  Identities=22%  Similarity=0.174  Sum_probs=36.9

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++.+.++.++++.|++.+.+..+|+|+ |+..|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~   42 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDR   42 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHH
Confidence            5678999999999999999988888999998 9999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.01  E-value=0.041  Score=58.36  Aligned_cols=45  Identities=4%  Similarity=-0.207  Sum_probs=41.0

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      ++++++.+++++++.++++.|.+.+...++|+|+   .|...|+++..
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~  153 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKR  153 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHH
Confidence            5799999999999999999999999999999998   47889999874

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=94.91  E-value=0.027  Score=45.61  Aligned_cols=42  Identities=24%  Similarity=0.171  Sum_probs=36.9

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+.++.+.++.++++.|++.+...++|+|+-|...|+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~   44 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDG   44 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechH
Confidence            456789999999999999988878888999889999999964

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=94.72  E-value=0.041  Score=57.39  Aligned_cols=51  Identities=8%  Similarity=0.003  Sum_probs=44.2

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHH-----hCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQ-----KGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq-----~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .....+|-.+.+.+++++++.+++..+|     ....+..+|+|+.+...|+++-.
T Consensus       132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~  187 (451)
T COG2239         132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLR  187 (451)
T ss_pred             hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHH
Confidence            3466677788999999999999999999     45678899999999999999875

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.62  E-value=0.021  Score=46.26  Aligned_cols=42  Identities=12%  Similarity=0.134  Sum_probs=36.9

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++..++++.++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~   42 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITER   42 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHH
Confidence            56788999999999999999988889999996 5778888874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=94.37  E-value=0.035  Score=58.41  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+..+++.+++.++++++++.++++.|++.+...++|+|+ |...|+++..
T Consensus        88 VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~r  137 (475)
T TIGR01303        88 VKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDS  137 (475)
T ss_pred             cchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHH
Confidence            3455666889999999999999999999999999999986 7788988874

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=94.17  E-value=0.1  Score=53.68  Aligned_cols=99  Identities=14%  Similarity=0.107  Sum_probs=72.1

Q ss_pred             ceecccceeCcc-EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEec
Q 015949          204 KTARDAMTPASE-TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVS  269 (397)
Q Consensus       204 ~~V~diMtPr~~-v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vp  269 (397)
                      .++.++|.+... ......+.+.. +++..+...+.++..|             +++..... +...+.+.+......|+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  351 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT-QQQGLDAALIDAPLAVD  351 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-cCCchhhhhccCCceeC
Confidence            577888854322 22334556776 8999999999988888             23332211 22345565456788999


Q ss_pred             CCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          270 ETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       270 e~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++.+++..|.+.... ..|||+.|...|+++..
T Consensus       352 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~  386 (400)
T PRK10070        352 AQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKG  386 (400)
T ss_pred             CCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHH
Confidence            999999999999998777 77889999999999985

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=93.66  E-value=0.11  Score=54.94  Aligned_cols=49  Identities=12%  Similarity=-0.064  Sum_probs=42.4

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      ..+.++++++.+++++++.++++.|++.+...++|+|+   .|...|+++..
T Consensus        98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~  149 (495)
T PTZ00314         98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSR  149 (495)
T ss_pred             cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHH
Confidence            44456788999999999999999999999999999998   37788999874

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.58  E-value=0.065  Score=56.78  Aligned_cols=43  Identities=12%  Similarity=0.006  Sum_probs=38.8

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      ..++.|++++++.++++.|.+.+...++|+|+   .|...|+++..
T Consensus       105 ~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~  150 (502)
T PRK07107        105 VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSR  150 (502)
T ss_pred             CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcH
Confidence            45679999999999999999999999999997   68999999974

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=93.35  E-value=0.076  Score=52.69  Aligned_cols=52  Identities=25%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+  +++.|++++++.++++.|.+.+.+..+|+|+.|...|+++..
T Consensus       201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~  254 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDG  254 (326)
T ss_pred             cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecH
Confidence            3468888665  889999999999999999988888889999999999999974

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=93.13  E-value=5.9  Score=40.91  Aligned_cols=53  Identities=9%  Similarity=0.009  Sum_probs=44.7

Q ss_pred             CCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          253 DEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ++.+++++|..  ++..++.+.++.++++.|++.+....+|+++. +.+.|++...
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~k  244 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIK  244 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHH
Confidence            35678888643  58899999999999999999999999999874 6889988874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.49  E-value=0.17  Score=42.29  Aligned_cols=42  Identities=10%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~   43 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAV   43 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHH
Confidence            467899999999999999999999999999989999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=92.04  E-value=0.45  Score=48.38  Aligned_cols=85  Identities=12%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             EEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhC
Q 015949          218 AIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKG  284 (397)
Q Consensus       218 ~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~  284 (397)
                      ....+.+.. ++++.+...+.....|             +++..... ....+.+.+....+.|++++++.+++..|.+.
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKA  331 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh-cCCchhhhhccCCceECCCCcHHHHHHHHHhC
Confidence            445566776 7888888877766655             23322211 12245555556788999999999999999999


Q ss_pred             CceEEEEEecCCCcccccccc
Q 015949          285 HSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       285 ~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ... ..|+|+.|...|+++..
T Consensus       332 ~~~-~~v~~~~~~~~g~i~~~  351 (363)
T TIGR01186       332 GIK-VPVVDEDQRLVGIVTRG  351 (363)
T ss_pred             CCC-EEEECCCCcEEEEEEHH
Confidence            988 88889999999999985

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=92.01  E-value=0.2  Score=43.16  Aligned_cols=42  Identities=21%  Similarity=0.108  Sum_probs=38.4

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++.+++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~   43 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLG   43 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence            467899999999999999999989999999999999999964

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.76  E-value=0.24  Score=41.26  Aligned_cols=43  Identities=12%  Similarity=-0.001  Sum_probs=38.9

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~   43 (128)
T cd04632           1 EDVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRH   43 (128)
T ss_pred             CCceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHH
Confidence            4567899999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=91.61  E-value=0.18  Score=53.88  Aligned_cols=51  Identities=16%  Similarity=0.097  Sum_probs=47.0

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.++++.+++++++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus        68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~  118 (546)
T PRK14869         68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLS  118 (546)
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHH
Confidence            468888788999999999999999999999999999999999999999875

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.42  E-value=0.28  Score=40.38  Aligned_cols=42  Identities=17%  Similarity=0.048  Sum_probs=38.6

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |+..+++++++.++++.|.+.+...++|+|+.|...|+++..
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~   43 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRK   43 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence            568899999999999999999889999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=91.37  E-value=0.11  Score=50.09  Aligned_cols=51  Identities=18%  Similarity=0.053  Sum_probs=47.3

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..++.++|.++++.|..++++.++-..|-+++.+-|+|+|.. .+.|+.+..
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~  221 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLS  221 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHH
Confidence            457889989999999999999999999999999999999996 999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=91.20  E-value=0.12  Score=51.91  Aligned_cols=112  Identities=18%  Similarity=0.160  Sum_probs=73.0

Q ss_pred             Ccccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccccCCCCccceeeccCCcchhhHHhhhhhh
Q 015949          256 PVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKR  333 (397)
Q Consensus       256 ~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (397)
                      .+.++|.  .+.-+..++.++.+.++.-.+.+....+|+|++-.+.|+|+-..-.+..++..         -+|..... 
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~---------ieKVMtkn-  258 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTT---------IEKVMTKN-  258 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCcc---------HHHHhccC-
Confidence            3566632  56679999999999999999999999999999999999999852111111111         12333221 


Q ss_pred             hhhhhcCCCccccccc-CCCCCCC--ccccCCccccccCCCCCCCCCCCcceEEEeehhHHHHHh
Q 015949          334 SLKKRNRLSHDANLHR-GASTSKN--WSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEEL  395 (397)
Q Consensus       334 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~giit~edv~eel  395 (397)
                              |...+.+. -++.+.+  ||.=          +-+|-..++...+||||=-||++-|
T Consensus       259 --------p~tv~~~tsVAsvaq~MiwE~i----------em~PVv~~n~~llGiitR~dvlk~l  305 (432)
T COG4109         259 --------PITVRAKTSVASVAQMMIWEGI----------EMLPVVDSNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             --------CeeecccchHHHHHHHHHhccc----------eeeeEEcCCceEEEEEEHHHHHHHH
Confidence                    22222211 1122222  5532          2467778899999999999999865

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=90.85  E-value=0.23  Score=50.74  Aligned_cols=134  Identities=11%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             ccccHHHHHHHHHhhccccc-cCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcc
Q 015949          163 ALFRRAELKTLVDLHGNEAG-KGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRV  241 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~-~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~  241 (397)
                      +.+|+.|......+++.=+- ...-=.+++..++.++=.|..--+.       +-+.+.++.++. ++++.-..+||+.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~-------~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFIN-------NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccccc-------CCcccCCcccch-hhhhhccccccccc
Confidence            45778887776654431100 0111135566777777666553332       335778889998 89999999999999


Q ss_pred             cc----------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          242 PV----------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       242 PV----------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ||                +|+-.. .+..+.+.++|...+...|...++.++=+.+++.+-.-.+|||+.|+...+++..
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rt  221 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRT  221 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence            99                222211 3456778888877789999999999999999999999899999999999988885

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=90.55  E-value=0.23  Score=47.55  Aligned_cols=51  Identities=22%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             CCcccccccC-CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRR-IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~-~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++.++|.++ ++.++++.++.++++.|++.+...++|+|+.|...|+++..
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~  206 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDG  206 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcH
Confidence            4677886677 89999999999999999999889999999999999999974

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=90.36  E-value=0.48  Score=50.32  Aligned_cols=51  Identities=14%  Similarity=0.016  Sum_probs=46.0

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+.+++.+|++.|++.+|+.++-++|...+..-.+|+|.-|.-.|+++..
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~  199 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRK  199 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehH
Confidence            456777789999999999999999999999999888889999999999884

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=90.13  E-value=0.35  Score=39.29  Aligned_cols=41  Identities=12%  Similarity=-0.010  Sum_probs=34.8

Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      ...++++.++.++.+.|.+.+....+|+|+   -|...|+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~   47 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRS   47 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHH
Confidence            457899999999999999887767888898   58899999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=88.05  E-value=0.55  Score=38.28  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=38.2

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.++.++++.|.+.+....+|+|+.|...|+++..
T Consensus         1 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~   43 (121)
T cd04584           1 RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDR   43 (121)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHH
Confidence            4678899999999999999988877889999999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=87.50  E-value=0.62  Score=39.97  Aligned_cols=42  Identities=7%  Similarity=-0.085  Sum_probs=37.5

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.+++++++.++++.|++.+...++|+|+ |...|+++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~   42 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSES   42 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHH
Confidence            35678999999999999999999889999999 9989999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=86.63  E-value=0.44  Score=48.28  Aligned_cols=75  Identities=11%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             HHHHHhcCCCcccc----hhhc-ccCCCCCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEE-EecCCCcccc
Q 015949          230 MRLVLEKGHSRVPV----KNLL-TIHPEDEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVV-VRHQNDREQP  301 (397)
Q Consensus       230 l~~i~~~g~SR~PV----kDll-~~~~~~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiV-VDEyG~~~g~  301 (397)
                      ++-+.+..|+..|+    +|.+ +...-++..|.|+|..  .+.-+.-+.+...+.+++..+.-...+| -|.-..+.|+
T Consensus       170 lR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGv  249 (423)
T COG4536         170 LRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGV  249 (423)
T ss_pred             HHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhh
Confidence            44455556667777    3443 3333346778898753  4677999999999999987765444444 3444556666


Q ss_pred             ccc
Q 015949          302 HVP  304 (397)
Q Consensus       302 ~~~  304 (397)
                      +-.
T Consensus       250 lh~  252 (423)
T COG4536         250 LHV  252 (423)
T ss_pred             hhH
Confidence            544

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=84.89  E-value=1.1  Score=46.12  Aligned_cols=38  Identities=11%  Similarity=-0.036  Sum_probs=34.2

Q ss_pred             ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++.+..+++..|+..+..-++|+|+.|...|.++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  327 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSID  327 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHH
Confidence            44677899999999999999999999999999999874

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=83.45  E-value=1.2  Score=36.77  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV  243 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV  243 (397)
                      .+++++|.+  ++..++.++++. ++++.+.+.++..+||
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpV   94 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPV   94 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEE
Confidence            679999986  566899999998 9999999999999998

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=80.57  E-value=2.4  Score=43.52  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             HHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--h------hhcccCC-CCCCCcccccccC
Q 015949          194 IITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K------NLLTIHP-EDEVPVKNVSIRR  264 (397)
Q Consensus       194 ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k------Dll~~~~-~~~~~v~~i~~r~  264 (397)
                      ++..+-..+-.+++++|.|...+.  ..+.+ .  ++..   .+.+...|  +      +...... .....+.++ .+.
T Consensus       264 ~~~~~~~~~~l~a~~~m~~~~~~~--~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  334 (382)
T TIGR03415       264 FVAHTNPLNVLTARSLMRPLTDLE--HVDGG-W--CVSD---RRDTWLFTIDKQVRRRDAKLPVQAWAAEQEVESL-EAA  334 (382)
T ss_pred             HhcccCcccceeHHHHhccccccc--ccCcc-h--hhhh---cccceeEeeccceecccchHhHhhcccccchhhh-ccc
Confidence            334444466678999998755422  22333 1  2222   56666555  2      1111111 022345554 678


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+.|++++++.+++..+.....++++| |+ |...|+++..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-~~~~g~~~~~  373 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGGAILLV-EN-GRIVGVIGDD  373 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCCCeEEe-eC-CeEEEEEeHH
Confidence            899999999999999999888887765 77 9999999874

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=80.51  E-value=3.1  Score=42.36  Aligned_cols=40  Identities=13%  Similarity=-0.094  Sum_probs=34.6

Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ....++.+..++++.|+..+..-++|+|+.+...|.++..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  292 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVE  292 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHH
Confidence            3456677899999999999999999999999998888864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	2e-25
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	2e-24
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	8e-24
3oco_A	153	Hemolysin-like protein containing CBS domains; str	3e-23
3ocm_A	173	Putative membrane protein; structural genomics, PS	6e-23
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	1e-19
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-18
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	8e-18
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	1e-17
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	4e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score = 99.8 bits (250), Expect = 2e-25
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 21/141 (14%)

Query: 167 RAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLD 226
             ++  L+     +A +      D    +   L+ S+   RDAM   S    +  +  ++
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 227 RNLMRLVLEKGHSRVPV--------------KNLLT-IHPEDEVPVKNVSIRRIPRVSET 271
           R     V++  HSR PV              K+LL  +   ++  +K++ +R    V E 
Sbjct: 61  RIT-AYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSI-LRPAVFVPEG 118

Query: 272 MPLYDILNEFQKGHSHMAVVV 292
             L  +L EF++  +HMA+V+
Sbjct: 119 KSLTALLKEFREQRNHMAIVI 139

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 21/141 (14%)

Query: 167 RAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLD 226
           + +++ ++     E    G +  +E  ++     L E+T    M P S+   +D++  LD
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 227 RNLMRLVLEKGHSRVPV--------------KNLLT-IHPEDEVPVKNVSIRRIPRVSET 271
            NL R V++  HSR PV              K LL+     + + + ++ ++    V  +
Sbjct: 65  ANL-RTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDL-VKNCNFVPNS 122

Query: 272 MPLYDILNEFQKGHSHMAVVV 292
           +   ++L  F+   S M  VV
Sbjct: 123 LSGMELLEHFRTTGSQMVFVV 143

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score = 95.2 bits (238), Expect = 8e-24
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 183 KGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP 242
             G +   E  ++    E  EK  R+ M P ++   I  S   ++ L  ++ E+G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKIL-AILKEEGVTRYP 60

Query: 243 V--------------KNLLT-IHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSH 287
           V              ++L      E+++ ++ + +R I  +SE + +   L   +K    
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEEI-LRDIIYISENLTIDKALERIRKEKLQ 119

Query: 288 MAVVV 292
           +A+VV
Sbjct: 120 LAIVV 124

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 94.0 bits (235), Expect = 3e-23
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 186 ELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-- 243
               ++   +  A E+++K A D M   +    +DV   +   L  L LE+ +SR PV  
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIADAL-LLYLEEQYSRFPVTA 60

Query: 244 -------------KNLLT-IHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMA 289
                         +++     +D+  +  + +R I  V E M + D++ E       MA
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKISTI-MRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 290 VVV 292
           +V+
Sbjct: 120 IVI 122

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 93.7 bits (234), Expect = 6e-23
 Identities = 22/139 (15%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 168 AELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDR 227
           +      DL  +          +E  +++G L L+E++ R  MTP ++   +++      
Sbjct: 1   SNASDESDLP-SAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAAT 59

Query: 228 NLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMP 273
              + +    HS  PV              K+L+     +    +N  +R    V E++ 
Sbjct: 60  IR-QQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNR-LRDPIIVHESIG 117

Query: 274 LYDILNEFQKGHSHMAVVV 292
           +  +++  ++    + +V 
Sbjct: 118 ILRLMDTLKRSRGQLVLVA 136

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 83.2 bits (207), Expect = 1e-19
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNL 246
            +E+T  D M P S    +D+S  L + L   ++E  HSR PV              K+L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLPQLL-ATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 247 LTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292
           L    E  + ++++ +R    + E   L  +L EF+   +H+A+V+
Sbjct: 61  LRYMLEPALDIRSL-VRPAVFIPEVKRLNVLLREFRASRNHLAIVI 105

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 80.5 bits (200), Expect = 1e-18
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 18/108 (16%)

Query: 201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNL 246
             +      MTP    F +D +  ++  L     +   SR  V                L
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTINEFL-DKHKDTPFSRPLVYSEQKDNIIGFVHRLEL 61

Query: 247 LT--IHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292
                    +  +  V +R I  V     L  + ++       +A+VV
Sbjct: 62  FKMQQSGSGQKQLGAV-MRPIQVVLNNTALPKVFDQMMTHRLQLALVV 108

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 78.3 bits (194), Expect = 8e-18
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLL 247
           ++   RD M P S+  +I  +       +  V++  HSR PV              K+LL
Sbjct: 1   ADLQVRDIMVPRSQMISIKATQTPRE-FLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL 59

Query: 248 ---TIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292
                   D   VK + +R    V E+  L  +L EF+  H+HMA+V+
Sbjct: 60  PLILKADGDSDDVKKL-LRPATFVPESKRLNVLLREFRANHNHMAIVI 106

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 77.5 bits (192), Expect = 1e-17
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLL 247
           +++  RD M P S+   +  +  LD   + +++E  HSR PV              K+LL
Sbjct: 1   ADQRVRDIMIPRSQMITLKRNQTLDE-CLDVIIESAHSRFPVISEDKDHIEGILMAKDLL 59

Query: 248 --TIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292
                  +   +  V +R    V E+  +  +L EF+    HMA+V+
Sbjct: 60  PFMRSDAEAFSMDKV-LRTAVVVPESKRVDRMLKEFRSQRYHMAIVI 105

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLT 248
           + +  D M P +E   ID++     +++R +    H R+ +              +    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 249 IHPEDEVPVKNVSIRRIPR----VSETMPLYDILNEFQKGHSHMAVVV 292
           +  E +       + R       V E  PL   L +FQ+    + +VV
Sbjct: 60  LMTEKK-EFTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 48/220 (21%)

Query: 200 ELSEK--TARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKNLLTIHPEDEVPV 257
           E  E     +D ++   + F  +   K  +++ + +L    S+  + +++          
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHII------MSK- 58

Query: 258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE-----------QPHVPIE 306
                     VS T+ L+  L   Q+      V    + + +           QP +   
Sbjct: 59  --------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 307 HSTDEREVRVDVDGQSHLK------EKCLKTKRSLKKRNRLSHDAN--LHRGASTSKNWS 358
              ++R+ R+  D Q   K      +  LK +++L +   L    N  +     + K W 
Sbjct: 111 MYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTW- 165

Query: 359 RDFHSEVLHITDDPQRMENG-EWEAVGIITLEDVIEELLQ 397
                +V        +M+    W  +      + + E+LQ
Sbjct: 166 --VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.83
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.79
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.7
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.69
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.57
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.53
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.5
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.48
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.47
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.46
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.45
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.45
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.43
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.41
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.36
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.36
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.36
3ddj_A	296	CBS domain-containing protein; structural genomics	99.3
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.18
4esy_A	170	CBS domain containing membrane protein; structural	99.16
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.16
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.16
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.14
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.13
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.1
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.1
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.09
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.08
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.06
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.04
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.03
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.02
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.02
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.99
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.99
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.98
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.97
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.97
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.97
3ddj_A	296	CBS domain-containing protein; structural genomics	98.95
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.94
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.93
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.92
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.91
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.91
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.9
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.89
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.87
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.87
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.87
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.86
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.85
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.85
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.8
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.79
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.78
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.73
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.68
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.67
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.49
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.49
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.45
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.3
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.24
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.24
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.16
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.15
4esy_A	170	CBS domain containing membrane protein; structural	98.09
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.09
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.05
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.03
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.0
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.99
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.99
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.97
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.96
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.95
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.9
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.81
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.8
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.79
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.78
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.72
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.72
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.69
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.67
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.65
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.64
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.64
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.63
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.62
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.58
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.55
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.54
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.47
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.46
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.43
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.43
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.34
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.3
1vr9_A	213	CBS domain protein/ACT domain protein; structural	97.28
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.23
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.15
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.09
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	96.89
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	96.88
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	96.45
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.37
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	96.34
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.23
3fio_A	70	A cystathionine beta-synthase domain protein fused	96.22
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	96.21
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	95.9
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.68
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.6
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	95.57
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	94.97
3fio_A	70	A cystathionine beta-synthase domain protein fused	94.84
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	94.82
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	94.67
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	92.94
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	91.45

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.83  E-value=8.1e-21  Score=166.43  Aligned_cols=136  Identities=23%  Similarity=0.310  Sum_probs=122.8

Q ss_pred             cccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949          164 LFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV  243 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV  243 (397)
                      .+|++||+.+++.    +.++|.++++|+++++++++|.+.+|+++|+|+.++++++.++++. ++++.+.+++++++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            3799999999984    4567999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             --------------hhhcccCCC-CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          244 --------------KNLLTIHPE-DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       244 --------------kDll~~~~~-~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                    +|++..... ...++.++ ++++++|++++++.++++.|++.+.+.++|+|++|...|+++..
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~i-m~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~  152 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSI-LRPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFE  152 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHH-CBCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHH
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHH-cCCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHH
Confidence                          455554333 45678998 58899999999999999999999999999999999999999873

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.79  E-value=4.4e-20  Score=164.43  Aligned_cols=138  Identities=22%  Similarity=0.400  Sum_probs=89.4

Q ss_pred             cccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcc
Q 015949          162 EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRV  241 (397)
Q Consensus       162 ~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~  241 (397)
                      .+.+|++||+.+++    ++.+.|.++++|++++++++.|.+.+|+++|+|+.++++++.++++. ++++.+.+++++++
T Consensus         4 ~~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~   78 (172)
T 3lhh_A            4 DDNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRF   78 (172)
T ss_dssp             -------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEE
T ss_pred             cccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEE
Confidence            35689999999998    35567999999999999999999999999999999999999999998 99999999999999


Q ss_pred             cc--------------hhhcccC-CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          242 PV--------------KNLLTIH-PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       242 PV--------------kDll~~~-~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ||              +|++... .+...++.++| +++++|++++++.++++.|++.+.+.++|+|++|...|+++..
T Consensus        79 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~  156 (172)
T 3lhh_A           79 PVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQ  156 (172)
T ss_dssp             EEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             EEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHH
Confidence            99              4444432 22367899996 9999999999999999999999999999999999999999984

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.70  E-value=1.3e-17  Score=149.23  Aligned_cols=122  Identities=20%  Similarity=0.313  Sum_probs=106.3

Q ss_pred             cccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhh
Q 015949          181 AGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNL  246 (397)
Q Consensus       181 ~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDl  246 (397)
                      +.++|.++++|++++++++.|.+.+|+++|+|+.++++++.++++. ++++.+.+++|+++||              +|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            3467999999999999999999999999999999999999999998 9999999999999999              445


Q ss_pred             cccC-CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          247 LTIH-PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       247 l~~~-~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +... .....++. + ++++++|++++++.++++.|++++.|+++|+|++|...|+++..
T Consensus        92 ~~~~~~~~~~~v~-~-~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~  149 (173)
T 3ocm_A           92 VADLITEGRVRRN-R-LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPI  149 (173)
T ss_dssp             HHHHHHHSSCCGG-G-SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHH
T ss_pred             HHHHhcCCcchhH-h-cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHH
Confidence            4332 11345677 5 79999999999999999999999999999999999999999985

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.69  E-value=9.2e-18  Score=144.90  Aligned_cols=121  Identities=21%  Similarity=0.364  Sum_probs=94.6

Q ss_pred             cCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcc
Q 015949          183 KGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLT  248 (397)
Q Consensus       183 ~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~  248 (397)
                      ++|.++++|++++++++.+.+.+|+|+|+|+.++++++.++++. ++++.+.+++++++||              +|++.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            35899999999999999999999999999999999999999998 9999999999999999              34443


Q ss_pred             cCCC-CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          249 IHPE-DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       249 ~~~~-~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .... ...++.++| +++++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~  137 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIE  137 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHH
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence            3211 267899996 9999999999999999999999999999999999999999874

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.57  E-value=4.6e-16  Score=135.25  Aligned_cols=117  Identities=22%  Similarity=0.350  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc---------------hhhcccC-
Q 015949          187 LTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIH-  250 (397)
Q Consensus       187 l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV---------------kDll~~~-  250 (397)
                      ++++|++++++++.|++.+|+++|+|+.++++++.++++. ++++.+.+++++++||               +|++... 
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            6788999999999999999999999999999999999998 9999999999999999               3343321 


Q ss_pred             CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 ~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .....+++++| +++++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        82 ~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~  135 (153)
T 3oco_A           82 IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDK  135 (153)
T ss_dssp             HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHH
T ss_pred             cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHH
Confidence            12357899996 9999999999999999999999999999999999999999985

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.53  E-value=1.3e-14  Score=122.51  Aligned_cols=103  Identities=28%  Similarity=0.416  Sum_probs=90.8

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCCCCCCcccccccCCc
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDEVPVKNVSIRRIP  266 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~~~~~v~~i~~r~~~  266 (397)
                      .++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||              +|++.....+..++.++ +++++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~-m~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSL-VRPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGG-CBCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHH-hCCCe
Confidence            36789999999999999999999998 9999999999999999              55555443456789998 68899


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~  118 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTME  118 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHH
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence            999999999999999999999999999999999999874

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.50  E-value=2.1e-14  Score=139.55  Aligned_cols=120  Identities=8%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             CCCCHHHHHHHHHhhcc-ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhccc
Q 015949          185 GELTRDETTIITGALEL-SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTI  249 (397)
Q Consensus       185 G~l~~~E~~ii~~~l~l-~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~  249 (397)
                      +.++++|+.+++++++| ++++|+|+|+|+.++++++.++++. ++++.+.+++|+++||              +|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~   80 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   80 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            34678899999999994 5599999999999999999999998 9999999999999999              555542


Q ss_pred             C--------CCC------CCCccc-------ccccCC--cEecCCCCHHHHHHHHHhCCceEEEEEecCCC-----cccc
Q 015949          250 H--------PED------EVPVKN-------VSIRRI--PRVSETMPLYDILNEFQKGHSHMAVVVRHQND-----REQP  301 (397)
Q Consensus       250 ~--------~~~------~~~v~~-------i~~r~~--~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~-----~~g~  301 (397)
                      .        ...      ..++..       +|.+++  ++|++++++.++++.|++.+.|.++|+|++|+     ..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Gi  160 (334)
T 2qrd_G           81 IKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  160 (334)
T ss_dssp             HHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEE
T ss_pred             HHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEE
Confidence            1        111      222322       245777  99999999999999999999999999999987     8999


Q ss_pred             cccc
Q 015949          302 HVPI  305 (397)
Q Consensus       302 ~~~~  305 (397)
                      ++..
T Consensus       161 vt~~  164 (334)
T 2qrd_G          161 LTQY  164 (334)
T ss_dssp             EEHH
T ss_pred             eeHH
Confidence            9884

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.48  E-value=4.1e-14  Score=120.56  Aligned_cols=102  Identities=29%  Similarity=0.422  Sum_probs=89.9

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCC---CCCCCcccccccC
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHP---EDEVPVKNVSIRR  264 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~---~~~~~v~~i~~r~  264 (397)
                      ++.+|+++|+|+.++++++.++++. ++++.+.+++++++||              +|++....   ....+++++ +++
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~-m~~   78 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKL-LRP   78 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGT-CBC
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHH-cCC
Confidence            3678999999999999999999998 9999999999999999              55554322   235678998 588


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~  119 (136)
T 3lfr_A           79 ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIE  119 (136)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHH
T ss_pred             CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence            99999999999999999999999999999999999999985

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.47  E-value=2e-14  Score=121.81  Aligned_cols=101  Identities=21%  Similarity=0.290  Sum_probs=88.7

Q ss_pred             cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCCC----CCCcccccccC
Q 015949          203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPED----EVPVKNVSIRR  264 (397)
Q Consensus       203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~~----~~~v~~i~~r~  264 (397)
                      +.+|+|+|+|+.++++++.++++. ++++.+.+++++++||              +|++....++    ..++.++ +++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~-m~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRA-ADE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHH-SBC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHh-ccC
Confidence            368999999999999999999998 9999999999999999              4555433221    2457888 599


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~  119 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVE  119 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHH
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHH
Confidence            99999999999999999999999999999999999999874

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.46  E-value=2.7e-13  Score=124.68  Aligned_cols=126  Identities=6%  Similarity=0.029  Sum_probs=109.7

Q ss_pred             ccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhc---CCCcc
Q 015949          165 FRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEK---GHSRV  241 (397)
Q Consensus       165 ~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~---g~SR~  241 (397)
                      +.+++.+.++.          .++++|++++++++.+.+.+|+++|+|  ++++++.+.++. ++++.+.+.   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            44555566654          378999999999999999999999998  788999999998 999999986   77888


Q ss_pred             cc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          242 PV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       242 PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ||             +|++..  ....+++++|.+++++|++++++.++++.|++.+.+.++|||++|...|+++..
T Consensus        92 ~Vvd~~~~lvGivt~~dll~~--~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~  166 (205)
T 3kxr_A           92 FIVDEADKYLGTVRRYDIFKH--EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLR  166 (205)
T ss_dssp             EEECTTCBEEEEEEHHHHTTS--CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHH
T ss_pred             EEEcCCCeEEEEEEHHHHHhC--CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHH
Confidence            88             566643  245679999768899999999999999999999999999999999999999985

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.45  E-value=2.2e-14  Score=126.09  Aligned_cols=110  Identities=14%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             HHHHHhh-ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC----C---
Q 015949          193 TIITGAL-ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH----P---  251 (397)
Q Consensus       193 ~ii~~~l-~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~----~---  251 (397)
                      .||.+.| +|-..+++++|||+.++++++.++|++ ++++.+.++|||++||             +|++...    .   
T Consensus         3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~   81 (156)
T 3k6e_A            3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQE   81 (156)
T ss_dssp             HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHH
T ss_pred             chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccc
Confidence            3566666 366778999999999999999999998 9999999999999999             5655421    1   


Q ss_pred             -CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          252 -EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       252 -~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                       ....++.++|.+++++|++++++.++++.|++++  +++|||++|...|+++..
T Consensus        82 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~  134 (156)
T 3k6e_A           82 IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRK  134 (156)
T ss_dssp             HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHH
T ss_pred             cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHH
Confidence             1256789998889999999999999999998764  589999999999999985

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.45  E-value=2.5e-14  Score=120.73  Aligned_cols=104  Identities=16%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC--CCCCCCccccccc
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH--PEDEVPVKNVSIR  263 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~--~~~~~~v~~i~~r  263 (397)
                      +|++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||              +|++...  .....++.++ ++
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~-m~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAV-MR   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHH-SE
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHH-hc
Confidence            478899999999999999999999998 9999999999999999              4444432  1235678998 58


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~  121 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLE  121 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHH
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHH
Confidence            999999999999999999999999999999999999999874

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.43  E-value=1.2e-13  Score=115.92  Aligned_cols=102  Identities=26%  Similarity=0.428  Sum_probs=89.3

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC--CCCCCCcccccccCC
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH--PEDEVPVKNVSIRRI  265 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~--~~~~~~v~~i~~r~~  265 (397)
                      ++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||              +|++...  .....+++++ ++++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~-m~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHH-CBCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHH-cCCC
Confidence            3678999999998999999999998 9999999999999999              4555432  2245678998 5889


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~  118 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIE  118 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHH
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence            9999999999999999999999999999999999999874

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.41  E-value=8.4e-14  Score=134.69  Aligned_cols=123  Identities=11%  Similarity=0.232  Sum_probs=100.5

Q ss_pred             ccCCCCCHHHHHHHHHhhcc-ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhh
Q 015949          182 GKGGELTRDETTIITGALEL-SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNL  246 (397)
Q Consensus       182 ~~~G~l~~~E~~ii~~~l~l-~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDl  246 (397)
                      .+.|.++++|+++++++++| .+.+++|+|+|+.++++++.++++. ++++.+.+++++++||              +|+
T Consensus         7 ~~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl   85 (323)
T 3t4n_C            7 DSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDF   85 (323)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHH
Confidence            34578999999999999998 9999999999999999999999998 9999999999999999              344


Q ss_pred             cccC------CC--------CCCCccc------ccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCC-----cccc
Q 015949          247 LTIH------PE--------DEVPVKN------VSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND-----REQP  301 (397)
Q Consensus       247 l~~~------~~--------~~~~v~~------i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~-----~~g~  301 (397)
                      +...      +.        ....+++      +|.+++.++++++++.++++.|++++.+.++|+|++|+     ..|+
T Consensus        86 ~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Gi  165 (323)
T 3t4n_C           86 INVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSV  165 (323)
T ss_dssp             HHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEE
T ss_pred             HHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEE
Confidence            3321      00        0011222      22478899999999999999999999999999999987     8999


Q ss_pred             cccc
Q 015949          302 HVPI  305 (397)
Q Consensus       302 ~~~~  305 (397)
                      ++..
T Consensus       166 vt~~  169 (323)
T 3t4n_C          166 LTQY  169 (323)
T ss_dssp             EEHH
T ss_pred             ecHH
Confidence            8874

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.36  E-value=9e-13  Score=126.19  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=104.5

Q ss_pred             CCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhc-----CCCcccc-------------hhh
Q 015949          185 GELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEK-----GHSRVPV-------------KNL  246 (397)
Q Consensus       185 G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~-----g~SR~PV-------------kDl  246 (397)
                      |.++..++..+.+++.+.+.+|+++|+|  ++++++.+.++. ++++.+.++     +++++||             +|+
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dl  192 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL  192 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHH
Confidence            4688999999999999999999999998  788999999998 999999988     6799999             555


Q ss_pred             cccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          247 LTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       247 l~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..  ....++.++|.+++++|++++++.++++.|++.+.+.++|||++|...|+++..
T Consensus       193 l~~--~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~  249 (278)
T 2yvy_A          193 IVA--DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVD  249 (278)
T ss_dssp             HHS--CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             hcC--CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHH
Confidence            543  245689999768999999999999999999999999999999999999999985

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.36  E-value=1.2e-12  Score=134.90  Aligned_cols=133  Identities=13%  Similarity=0.116  Sum_probs=116.7

Q ss_pred             cccHHHHHHHHHhhccccccC---------CCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHH
Q 015949          164 LFRRAELKTLVDLHGNEAGKG---------GELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVL  234 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~---------G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~  234 (397)
                      .+++||+..+++..    .++         +.++.+|++++.+++++.+.+|+++|+|  ++++++.+.+++ ++++.+.
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            46788888888732    234         7899999999999999999999999998  799999999998 9999999


Q ss_pred             hcC-----CCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCC
Q 015949          235 EKG-----HSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN  296 (397)
Q Consensus       235 ~~g-----~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG  296 (397)
                      +++     ++++||             +|++..  ..+.+++++|.+++++|++++++.++++.|++.+.+.++|||++|
T Consensus       183 ~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g  260 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG  260 (473)
T ss_dssp             HHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS--CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             hccCCcCceeEEEEECCCCcEEEEEEHHHHhcC--CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC
Confidence            874     689999             566543  345789999768999999999999999999999999999999999


Q ss_pred             Ccccccccc
Q 015949          297 DREQPHVPI  305 (397)
Q Consensus       297 ~~~g~~~~~  305 (397)
                      ...|+++..
T Consensus       261 ~lvGiIT~~  269 (473)
T 2zy9_A          261 RLVGIVTVD  269 (473)
T ss_dssp             BEEEEEEHH
T ss_pred             EEEEEEehH
Confidence            999999985

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.36  E-value=1e-13  Score=134.68  Aligned_cols=121  Identities=13%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             ccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhc
Q 015949          182 GKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLL  247 (397)
Q Consensus       182 ~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll  247 (397)
                      +++|.+.+.|++.+++.  |++.+|+|+|+|+.++++++.++++. ++++.+.+++|+++||              +|++
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            45677878888888887  57899999999999999999999998 9999999999999999              4544


Q ss_pred             ccCC------C------CCCC-------cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec-CCCcccccccc
Q 015949          248 TIHP------E------DEVP-------VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH-QNDREQPHVPI  305 (397)
Q Consensus       248 ~~~~------~------~~~~-------v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE-yG~~~g~~~~~  305 (397)
                      ....      .      ...+       +.++|.+++++|++++++.++++.|++++.+.++|+|+ +|...|+++..
T Consensus        92 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~  169 (330)
T 2v8q_E           92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  169 (330)
T ss_dssp             HHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             HHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHH
Confidence            3210      0      0111       23456788999999999999999999999999999999 99999999984

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.30  E-value=1.3e-12  Score=124.67  Aligned_cols=128  Identities=14%  Similarity=0.183  Sum_probs=104.2

Q ss_pred             cccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949          164 LFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV  243 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV  243 (397)
                      .+|.+||...+..    +.+.       .+...+.+.+.+.+|+++|+|  ++++++.++++. ++++.+.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~~-------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCKD-------SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----cccc-------cccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            5788888776641    1100       344556667778999999998  677999999998 9999999999999999


Q ss_pred             -------------hhhcccCC--CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          244 -------------KNLLTIHP--EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       244 -------------kDll~~~~--~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                   +|++....  ....++.++|.++++++++++++.++++.|++.+.+.++|+|++|...|+++..
T Consensus       130 vd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~  206 (296)
T 3ddj_A          130 VDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVV  206 (296)
T ss_dssp             ECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             EcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHH
Confidence                         56665322  234578898778999999999999999999999999999999999999999984

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.18  E-value=1.5e-11  Score=115.48  Aligned_cols=131  Identities=10%  Similarity=0.134  Sum_probs=100.4

Q ss_pred             cccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949          164 LFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV  243 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV  243 (397)
                      .+|.+||...+..    ..+.+.+..   ....+.+...+.+|+++|+|  ++++++.++++. ++++.+.+++++++||
T Consensus        51 ivt~~di~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGG----GSKYNLIRE---KHERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTT----SGGGHHHHT---TSTTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhcc----cchhhhhhh---ccccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            5788888877641    111111111   11223344457899999997  778999999998 9999999999999999


Q ss_pred             -------------hhhcccCC---CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          244 -------------KNLLTIHP---EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       244 -------------kDll~~~~---~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                   +|++....   ....++.++|.++++++++++++.++++.|++.+.+.++|+ ++|...|+++..
T Consensus       121 vd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~  197 (280)
T 3kh5_A          121 VNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITST  197 (280)
T ss_dssp             ECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHH
T ss_pred             EcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHH
Confidence                         56554321   22347889877899999999999999999999999999999 789999999985

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.16  E-value=4.7e-11  Score=105.30  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----
Q 015949          190 DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----  252 (397)
Q Consensus       190 ~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----  252 (397)
                      .++..+.+.  +++.+|+|+|++  ++++++.++++. ++++.+.+++++.+||             +|++.....    
T Consensus         6 ~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            6 ARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhcccc
Confidence            334445554  468999999996  788999999998 9999999999999999             566543110    


Q ss_pred             ----------------------CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          253 ----------------------DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 ----------------------~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                            ...++.++|.+++++|++++++.++++.|.+++.|..+|+|+ |...|+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGivt~~  154 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-GVPVGIVTRR  154 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHH
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHH
Confidence                                  134678888889999999999999999999999999999996 9999999984

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.16  E-value=2.2e-11  Score=103.92  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=89.5

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-----------------C
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-----------------P  251 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-----------------~  251 (397)
                      ...+|+|+|+|+.++++++.++++. ++++.+.+++++++||             +|++...                 .
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~   81 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSK   81 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC---
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHH
Confidence            4578999999998999999999998 9999999999999999             5665421                 1


Q ss_pred             CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          252 EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       252 ~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ....++.++|.+++++|++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        82 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~  135 (152)
T 4gqw_A           82 TNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRG  135 (152)
T ss_dssp             --CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHH
T ss_pred             hccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHH
Confidence            124678888777789999999999999999999999999999999999999984

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.16  E-value=3e-11  Score=104.33  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=88.0

Q ss_pred             HHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC---------
Q 015949          195 ITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE---------  252 (397)
Q Consensus       195 i~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~---------  252 (397)
                      ..+...|.+.+|+++|+|+.++++++.++++. ++++.+.+++++++||             +|++.....         
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHh
Confidence            34566788999999999988899999999998 9999999999999999             455543221         


Q ss_pred             CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          253 DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ...++.++|.++++++++++++.++++.|.+.+.  ++|+|+.|...|+++..
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~  131 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRR  131 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHH
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHH
Confidence            3467889877889999999999999999999976  88999999999999984

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.14  E-value=9.1e-11  Score=112.97  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhc-----CCCcccc-------------hhh
Q 015949          185 GELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEK-----GHSRVPV-------------KNL  246 (397)
Q Consensus       185 G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~-----g~SR~PV-------------kDl  246 (397)
                      +.++.+|+..+.+.+.+.+.+|+++|+|  ++++++.+.++. ++++.+.++     +++++||             +|+
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dl  194 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDL  194 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHH
Confidence            3588889999999999999999999997  788999999998 999999998     8899999             555


Q ss_pred             cccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          247 LTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       247 l~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..  ....++.++|.+++++|++++++.++++.|++.+.+.++|||++|...|+++..
T Consensus       195 l~~--~~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~  251 (286)
T 2oux_A          195 IVN--DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVD  251 (286)
T ss_dssp             TTS--CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             HcC--CCCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHH
Confidence            543  235679999778999999999999999999999999999999999999999985

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.10  E-value=3.3e-11  Score=103.45  Aligned_cols=105  Identities=16%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             hhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---------CCCC
Q 015949          198 ALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---------EDEV  255 (397)
Q Consensus       198 ~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---------~~~~  255 (397)
                      .-.|.+.+|+++|+|..++.+++.++++. ++++.+.+++++++||             +|++....         ....
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   87 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEM   87 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGC
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcC
Confidence            34578899999999988899999999998 9999999999999999             56654321         1346


Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.++|.+++++|++++++.++++.|.+++.  .+|+|+.|...|+++..
T Consensus        88 ~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~  135 (150)
T 3lqn_A           88 KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRR  135 (150)
T ss_dssp             BGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHH
T ss_pred             CHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHH
Confidence            7899977889999999999999999999886  88999999999999984

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.10  E-value=1.8e-10  Score=108.20  Aligned_cols=98  Identities=11%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             eeccc-ceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCC-----------------
Q 015949          205 TARDA-MTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPE-----------------  252 (397)
Q Consensus       205 ~V~di-MtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~-----------------  252 (397)
                      ++++. |++  ++++++.++++. ++++.+.+++++++||              +|++.....                 
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            34454 554  789999999998 9999999999999999              455443211                 


Q ss_pred             -CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          253 -DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 -~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                       .+.+++++|.+++++|++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus        81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~  134 (280)
T 3kh5_A           81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITER  134 (280)
T ss_dssp             HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHH
T ss_pred             HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHH
Confidence             13478999777899999999999999999999999999999999999999985

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.09  E-value=5.2e-11  Score=98.30  Aligned_cols=99  Identities=8%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSE  270 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe  270 (397)
                      .+|+++|+|  ++.+++.++++. ++++.+.+++++++||             +|++........++.++|.++++++++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~~   77 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHE   77 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEET
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEECC
Confidence            378999998  577999999998 9999999999999999             455544333445799997788999999


Q ss_pred             CCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          271 TMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       271 ~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        78 ~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~  112 (122)
T 3kpb_A           78 DEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSE  112 (122)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             CCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHH
Confidence            99999999999999999999999999999999874

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.08  E-value=9.7e-11  Score=98.28  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=88.5

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccC---CCCCCCcccccccCC
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIH---PEDEVPVKNVSIRRI  265 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~---~~~~~~v~~i~~r~~  265 (397)
                      |++.+|+++|+|  ++.+++.++++. ++++.+.+++++++||            +|++...   .....++.++|.+++
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~   77 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASL   77 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECC
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCC
Confidence            467899999998  577999999998 9999999999999999            4554431   123567899976889


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~  117 (133)
T 2ef7_A           78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIR  117 (133)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence            9999999999999999999999999999999999999984

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.06  E-value=6.6e-11  Score=104.15  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-------------------
Q 015949          203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-------------------  250 (397)
Q Consensus       203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-------------------  250 (397)
                      ..+|+++|+|+.++++++.++++. ++++.+.+++++++||             +|++...                   
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST   81 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------C
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence            468999999998999999999998 9999999999999999             5665321                   


Q ss_pred             ------------CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 ------------PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 ------------~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                  .....++.++|.+++++|++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~  148 (180)
T 3sl7_A           82 WKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRG  148 (180)
T ss_dssp             CCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHH
T ss_pred             hhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence                        1124578888777789999999999999999999999999999999999999984

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.04  E-value=3.7e-11  Score=124.57  Aligned_cols=130  Identities=14%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             ccccHHHHHHHHHhhccccccCCCC-----CHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGEL-----TRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l-----~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                      +.+|++|+...+...+    .-|.|     .+++.+++.++     ++++++|++  ++++++.+++++ ++++.+.+++
T Consensus        52 dtVTe~~ma~a~a~~G----GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQEG----GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHcC----CcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            4678999998886432    23445     66778999998     677899994  778999999998 9999999999


Q ss_pred             CCcccc-------------hhhcccCCCCCCCcccccc-c-CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccc
Q 015949          238 HSRVPV-------------KNLLTIHPEDEVPVKNVSI-R-RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPH  302 (397)
Q Consensus       238 ~SR~PV-------------kDll~~~~~~~~~v~~i~~-r-~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~  302 (397)
                      ||++||             +|++.. .....++.++|. + +++++++++++.++++.|++++.++++||||+|...|++
T Consensus       120 ~s~~PVvd~~~~lvGiVt~rDL~~~-~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiI  198 (496)
T 4fxs_A          120 FAGFPVVTENNELVGIITGRDVRFV-TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI  198 (496)
T ss_dssp             CCEEEEECSSSBEEEEEEHHHHTTC-CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEE
T ss_pred             CcEEEEEccCCEEEEEEEHHHHhhc-ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEee
Confidence            999999             566532 234678999954 3 699999999999999999999999999999999999999


Q ss_pred             ccc
Q 015949          303 VPI  305 (397)
Q Consensus       303 ~~~  305 (397)
                      +..
T Consensus       199 T~~  201 (496)
T 4fxs_A          199 TAK  201 (496)
T ss_dssp             CCC
T ss_pred             hHh
Confidence            986

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.03  E-value=3.4e-10  Score=95.49  Aligned_cols=103  Identities=13%  Similarity=0.193  Sum_probs=89.2

Q ss_pred             hccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhc-ccCC---CCCCCccccc
Q 015949          199 LELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLL-TIHP---EDEVPVKNVS  261 (397)
Q Consensus       199 l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll-~~~~---~~~~~v~~i~  261 (397)
                      +.|.+.+|+++|++  ++.+++.++++. ++++.+.+++++.+||             +|++ ....   ....++.++|
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m   78 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIM   78 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTC
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHh
Confidence            56889999999996  677999999998 9999999999999999             5665 2222   2356789997


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          262 IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       262 ~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++++++++++.++++.|.+++.+.+ |+|+.|...|+++..
T Consensus        79 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~  121 (138)
T 2yzi_A           79 TRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLS  121 (138)
T ss_dssp             BCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHH
T ss_pred             hCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHH
Confidence            7889999999999999999999999988 999999999999984

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.02  E-value=1.7e-10  Score=122.94  Aligned_cols=102  Identities=13%  Similarity=-0.024  Sum_probs=87.7

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHH-hcCCCcccc-------------hhhcccCCCC--------------
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVL-EKGHSRVPV-------------KNLLTIHPED--------------  253 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~-~~g~SR~PV-------------kDll~~~~~~--------------  253 (397)
                      ++.+|+|+|+||.++.+++.+++++ |+.+.+. +++|+++||             +|++......              
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            6789999999999999999999998 9999999 799999999             5665432110              


Q ss_pred             -------------------------------------CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCC
Q 015949          254 -------------------------------------EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN  296 (397)
Q Consensus       254 -------------------------------------~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG  296 (397)
                                                           ..++.++|.+++++|++++++.++++.|++++.|.++|+ |+|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                                                 002677888999999999999999999999999999999 899


Q ss_pred             Ccccccccc
Q 015949          297 DREQPHVPI  305 (397)
Q Consensus       297 ~~~g~~~~~  305 (397)
                      ...|+++..
T Consensus       609 ~lvGIVT~~  617 (632)
T 3org_A          609 KLVGIVERE  617 (632)
T ss_dssp             EEEEEEEGG
T ss_pred             EEEEEEehh
Confidence            999999995

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.02  E-value=1.1e-10  Score=100.56  Aligned_cols=100  Identities=15%  Similarity=0.110  Sum_probs=87.1

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIP  266 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~  266 (397)
                      .+|+|+|+|+.++.+++.++++. ++++.+.+++++++||             +|++....+    ...++.++|.++++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~  106 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGI  106 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCCe
Confidence            59999999988999999999998 9999999999999999             555543211    35678998778899


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +|+++.++.++++.|++.+.+.++|+|+. ...|+++..
T Consensus       107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~  144 (149)
T 3k2v_A          107 RIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMH  144 (149)
T ss_dssp             EECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHH
Confidence            99999999999999999999999999985 889998863

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.99  E-value=3.2e-10  Score=94.87  Aligned_cols=101  Identities=11%  Similarity=0.026  Sum_probs=87.6

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCC---CCCcccccccCCc
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPED---EVPVKNVSIRRIP  266 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~---~~~v~~i~~r~~~  266 (397)
                      .+.+|+++|++.  +.+++.++++. ++++.+.+++++.+||            +|++....+.   ..++.++|.++++
T Consensus         3 ~s~~v~~~m~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~   79 (128)
T 3gby_A            3 ASVTFSYLAETD--YPVFTLGGSTA-DAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVR   79 (128)
T ss_dssp             TTCBGGGGCBCC--SCCEETTSBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCCC
T ss_pred             cceEHHHhhcCC--cceECCCCCHH-HHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhhCCcccCcHHHHccCCCc
Confidence            467999999974  66999999998 9999999999999999            5666543322   2568999778899


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++++.++++.|.+.+.+..+|+|+.|...|+++..
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~  118 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRK  118 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHH
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHH
Confidence            999999999999999999999999999999999999874

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.99  E-value=2e-10  Score=100.58  Aligned_cols=107  Identities=7%  Similarity=0.026  Sum_probs=92.8

Q ss_pred             HhhccccceecccceeC-ccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-----CCCCCCc
Q 015949          197 GALELSEKTARDAMTPA-SETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-----PEDEVPV  257 (397)
Q Consensus       197 ~~l~l~~~~V~diMtPr-~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-----~~~~~~v  257 (397)
                      ....+...+|+|+|+|+ .++.+++.++++. ++++.+.+++++++||             +|++...     .....++
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v   95 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSV   95 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBG
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCH
Confidence            34567889999999996 6788999999998 9999999999999999             5555421     1235679


Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++|.+++++|++++++.++++.|.+.+.+..+|+|+ |...|+++..
T Consensus        96 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~  142 (165)
T 3fhm_A           96 SVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIG  142 (165)
T ss_dssp             GGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence            9997788999999999999999999999999999999 9999999985

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.98  E-value=5.4e-10  Score=99.68  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=87.1

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-----CCCCCcccccccCC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-----EDEVPVKNVSIRRI  265 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-----~~~~~v~~i~~r~~  265 (397)
                      .+|+++|++  ++++++.++++. ++++.+.+++++++||             +|++....     ....++.++|.+++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            689999985  788999999998 9999999999999999             55654322     23567899976789


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|++++++.++++.|++++.+.++|+|++|...|+++..
T Consensus        86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~  125 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLT  125 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHH
T ss_pred             cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHH
Confidence            9999999999999999999999999999999999999985

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.97  E-value=2e-10  Score=99.78  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=88.5

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---------CCCCCc
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---------EDEVPV  257 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---------~~~~~v  257 (397)
                      .+.+.+|+++|+|+.++++++.++++. ++++.+.+++++++||             +|++....         ....++
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v   88 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITV   88 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBH
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCH
Confidence            678899999999988899999999998 9999999999999999             45554321         134678


Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++|.+++++|++++++.++++.|.+.+.  ++|+|+.|...|+++..
T Consensus        89 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~  134 (159)
T 1yav_A           89 EEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRR  134 (159)
T ss_dssp             HHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHH
T ss_pred             HHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHH
Confidence            88877789999999999999999998865  89999999999999984

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.97  E-value=3.4e-10  Score=95.33  Aligned_cols=99  Identities=12%  Similarity=0.031  Sum_probs=86.8

Q ss_pred             eecccceeC-ccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcc-cCC----CCCCCcccccccCCc
Q 015949          205 TARDAMTPA-SETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLT-IHP----EDEVPVKNVSIRRIP  266 (397)
Q Consensus       205 ~V~diMtPr-~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~-~~~----~~~~~v~~i~~r~~~  266 (397)
                      +|+++|+|+ .++.+++.++++. ++++.+.+++++++||            +|++. ...    ....++.++|.++++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   85 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCe
Confidence            899999987 7899999999998 9999999999999999            56653 221    135678999778999


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++++.++++.|++.+.+.++|+| .|...|+++..
T Consensus        86 ~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~  123 (135)
T 2rc3_A           86 YVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIG  123 (135)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             EECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHH
Confidence            999999999999999999999999999 59999999884

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.97  E-value=7.4e-10  Score=94.04  Aligned_cols=98  Identities=6%  Similarity=0.053  Sum_probs=84.6

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc---h---hhcc---------cC-C--CCCCCcccccccCC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV---K---NLLT---------IH-P--EDEVPVKNVSIRRI  265 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV---k---Dll~---------~~-~--~~~~~v~~i~~r~~  265 (397)
                      .+|+++|++  ++.+++.++++. ++++.+.+++++++||   +   .+++         .. .  ....++.++|.+++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~   81 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   81 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCC
Confidence            589999996  788999999998 9999999999999999   1   2333         11 1  23567899977899


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|+++ ++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        82 ~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~  120 (141)
T 2rih_A           82 TVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIR  120 (141)
T ss_dssp             EEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             eEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHH
Confidence            999999 999999999999999999999999999999984

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.95  E-value=4.4e-10  Score=107.10  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-----------hhhcccCCC--------------CC
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-----------KNLLTIHPE--------------DE  254 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-----------kDll~~~~~--------------~~  254 (397)
                      .....+|+|+|++  ++.+++.++++. ++++.+.+++++++||           +|++.....              ..
T Consensus        16 ~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~~~~~V~d~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~   92 (296)
T 3ddj_A           16 YFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHIST   92 (296)
T ss_dssp             TTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHT
T ss_pred             hhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCCceEEEECCeEEEEEeHHHHHHHhcccccccccchhhHHHhc
Confidence            4567899999998  778999999998 9999999999999999           566554311              14


Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.+++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        93 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~  143 (296)
T 3ddj_A           93 TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTER  143 (296)
T ss_dssp             SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             ccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Confidence            578899778899999999999999999999999999999999999999985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.94  E-value=9.3e-10  Score=113.58  Aligned_cols=129  Identities=9%  Similarity=0.098  Sum_probs=107.2

Q ss_pred             cccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCC
Q 015949          164 LFRRAELKTLVDLHGNEAGKGGELT-----RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGH  238 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~G~l~-----~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~  238 (397)
                      .+|++||...+...    +..|.|.     +++++++.+++++     +++|+|  ++++++.++++. ++++.+.++++
T Consensus        54 ~vt~~eLa~av~~~----Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARA----GGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            57889999988743    2334555     6788899888765     679997  788999999998 99999999999


Q ss_pred             Ccccc-h--------------hhcccCCCCCCCccccccc-CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccc
Q 015949          239 SRVPV-K--------------NLLTIHPEDEVPVKNVSIR-RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPH  302 (397)
Q Consensus       239 SR~PV-k--------------Dll~~~~~~~~~v~~i~~r-~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~  302 (397)
                      +++|| .              |++.. ...+.++.++|.+ ++++|++++++.++++.|++.+.+.++|||++|...|++
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~~~-~~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiv  200 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMRFI-SDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI  200 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHC-SCSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHhhh-ccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            99999 3              34432 2346789999655 899999999999999999999999999999999999999


Q ss_pred             ccc
Q 015949          303 VPI  305 (397)
Q Consensus       303 ~~~  305 (397)
                      +..
T Consensus       201 t~~  203 (491)
T 1zfj_A          201 TIK  203 (491)
T ss_dssp             EHH
T ss_pred             EHH
Confidence            885

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.93  E-value=4.6e-10  Score=97.07  Aligned_cols=100  Identities=9%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             ceecccceeC----ccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC-----CCCCCcccccc
Q 015949          204 KTARDAMTPA----SETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP-----EDEVPVKNVSI  262 (397)
Q Consensus       204 ~~V~diMtPr----~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~-----~~~~~v~~i~~  262 (397)
                      ++|+|+|+|+    .++.+++.++++. ++++.+.+++++++||            +|++....     ....++.++|.
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   85 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMT   85 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcC
Confidence            5799999998    7889999999998 9999999999999999            56654321     13567899977


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|++++++.++++.|.+.+.+.++|+| .|...|+++..
T Consensus        86 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~  127 (157)
T 4fry_A           86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIG  127 (157)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             CCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHH
Confidence            8899999999999999999999999999999 59999999984

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.92  E-value=7.8e-10  Score=93.12  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=87.8

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhh-cccCC---CCCCCccccccc
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNL-LTIHP---EDEVPVKNVSIR  263 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDl-l~~~~---~~~~~v~~i~~r  263 (397)
                      |.+.+|+++|++  ++.+++.++++. ++++.+.+++++++||             +|+ +....   ....++.++|.+
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   81 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK   81 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCS
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCC
Confidence            678899999987  677999999998 9999999999999999             667 55322   235678888777


Q ss_pred             CCcEecCCCCHHHHHHHHHhCC-----ceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGH-----SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~-----~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++++++++.++++.|.+.+     .+.++|+|+.|...|+++..
T Consensus        82 ~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~  128 (138)
T 2p9m_A           82 DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDG  128 (138)
T ss_dssp             SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHH
T ss_pred             CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHH
Confidence            8999999999999999999999     99999999999999999874

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.91  E-value=1.2e-09  Score=95.11  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=87.1

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC----CCCCCCccccccc
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH----PEDEVPVKNVSIR  263 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~----~~~~~~v~~i~~r  263 (397)
                      |.+.+|+++|++  . ++++.++++. ++++.+.+++++++||             +|++...    .....++.++|.+
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   89 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTR   89 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcC
Confidence            567899999996  3 4999999998 9999999999999999             5665531    1235679999666


Q ss_pred             --CCcEecCCCCHHHHHHHHHhCCceEEEEEecCC---Ccccccccc
Q 015949          264 --RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN---DREQPHVPI  305 (397)
Q Consensus       264 --~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG---~~~g~~~~~  305 (397)
                        ++++|++++++.++++.|++.+.+.++|+|+.|   ...|+++..
T Consensus        90 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~  136 (159)
T 3fv6_A           90 MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT  136 (159)
T ss_dssp             TTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHH
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHH
Confidence              889999999999999999999999999999998   899999984

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.91  E-value=3.3e-09  Score=99.89  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcc-cCCC----CCCCccccccc
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLT-IHPE----DEVPVKNVSIR  263 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~-~~~~----~~~~v~~i~~r  263 (397)
                      .+.+++++|+|  ++.+++.++++. ++++.+.+++++++||             +|++. ...+    ...+++++|.+
T Consensus        58 ~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~  134 (282)
T 2yzq_A           58 DEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR  134 (282)
T ss_dssp             ------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBS
T ss_pred             ccCCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCC
Confidence            46789999997  467999999998 9999999999999999             56665 4332    24578888767


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.+++++++.++++.|.+++.+.++|+|++|...|+++..
T Consensus       135 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~  176 (282)
T 2yzq_A          135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDET  176 (282)
T ss_dssp             CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGG
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHH
Confidence            899999999999999999999999999999999999999974

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.90  E-value=2.9e-10  Score=117.54  Aligned_cols=127  Identities=13%  Similarity=0.158  Sum_probs=24.5

Q ss_pred             cccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCC
Q 015949          164 LFRRAELKTLVDLHGNEAGKGGELT-----RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGH  238 (397)
Q Consensus       164 ~~s~eEL~~lv~~~~~e~~~~G~l~-----~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~  238 (397)
                      .++++|+...+...    +..|.+.     +++++++.+++++++     +|++  ++++++.+++++ ++++.+.+++|
T Consensus        57 ~vt~~ela~ava~~----GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMARE----GGLGVIHRNMGIEEQVEQVKRVKRAER-----LIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHhc----CCceeecCCCCHHHHHHHHHhhcchhh-----cccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            56889998888632    2234453     577899999988754     6884  889999999998 99999999999


Q ss_pred             Ccccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          239 SRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       239 SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++||            +|++.   ....++.++|.+++++|++++++.++++.|++.+.+.++|||++|...|+++..
T Consensus       125 ~~~pVvd~~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~  200 (486)
T 2cu0_A          125 DGLPVVEDEKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMS  200 (486)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cEEEEEECCEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHH
Confidence            99999            34443   235678898666899999999999999999999999999999999999999986

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.89  E-value=9.1e-10  Score=103.73  Aligned_cols=96  Identities=19%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             eecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCC
Q 015949          205 TARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSET  271 (397)
Q Consensus       205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~  271 (397)
                      +|+++|++  ++++++.++++. ++++.+.+++++++||             +|++...  ...+++++|.+++++++++
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~--~~~~v~~~m~~~~~~v~~~   76 (282)
T 2yzq_A            2 RVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP--DEEQLAMLVKRDVPVVKEN   76 (282)
T ss_dssp             BHHHHSEE--SCCCEESSCC-------------CCEEEEECTTCCEEEEEESSCC------------CCCBSCCCEEETT
T ss_pred             chHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh--ccCCHHHHcCCCCcEECCC
Confidence            68999995  677999999998 9999999999999999             3333221  2457888866678999999


Q ss_pred             CCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          272 MPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       272 ~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        77 ~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~  110 (282)
T 2yzq_A           77 DTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVG  110 (282)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             CcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHH
Confidence            9999999999999999999999999999999884

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.87  E-value=1.7e-09  Score=93.75  Aligned_cols=102  Identities=14%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCc-ccc------------hhhcccC----------------
Q 015949          200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR-VPV------------KNLLTIH----------------  250 (397)
Q Consensus       200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR-~PV------------kDll~~~----------------  250 (397)
                      .+...+|+++|++  ++.+++.++++. ++++.+.++++++ +||            +|++...                
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~   88 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS   88 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhHHhhhccHHHHHH
Confidence            3577899999997  788999999998 9999999999999 999            4555421                


Q ss_pred             ---CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 ---PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 ---~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                         .....++.++|.+ +++|++++++.++++.|.+.+.+..+|+|+.|...|+++..
T Consensus        89 ~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~  145 (157)
T 1o50_A           89 SMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSL  145 (157)
T ss_dssp             CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             HHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHH
Confidence               1235678888656 99999999999999999999999999999999999999884

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.87  E-value=9e-10  Score=92.30  Aligned_cols=101  Identities=13%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhc-ccCCC----CCCCcccccc
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLL-TIHPE----DEVPVKNVSI  262 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll-~~~~~----~~~~v~~i~~  262 (397)
                      +.-.+|+++|++  ++.+++.++++. ++++.+.+++++++||             +|++ .....    ...++.++|.
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   81 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR   81 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHT
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhc
Confidence            455789999997  677999999998 9999999999999999             5665 22211    2467888877


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus        82 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~  123 (133)
T 1y5h_A           82 DSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEA  123 (133)
T ss_dssp             TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence            88999999999999999999999999999999 9999999874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.87  E-value=8.1e-10  Score=91.29  Aligned_cols=97  Identities=18%  Similarity=0.188  Sum_probs=83.9

Q ss_pred             eecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC----CCCCCcccccccCCcEe
Q 015949          205 TARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP----EDEVPVKNVSIRRIPRV  268 (397)
Q Consensus       205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~----~~~~~v~~i~~r~~~~V  268 (397)
                      +|+++|++  ++.+++.++++. ++++.+.+++++++||            +|++....    ....++.++|.++++++
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeEE
Confidence            68999997  677999999998 9999999999999999            45554311    13567888877889999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~  114 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISAT  114 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHH
Confidence            99999999999999999999999999 9999999874

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.86  E-value=2e-09  Score=111.97  Aligned_cols=130  Identities=11%  Similarity=0.107  Sum_probs=101.5

Q ss_pred             ccccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGELT-----RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l~-----~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                      +.+|++++...+...+    .-|.|.     +++.+++..+..     +++.|++  ++++++.++++. ++++.+.+++
T Consensus        76 dtvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~  143 (511)
T 3usb_A           76 DTVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYR  143 (511)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHC
T ss_pred             hhhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcC
Confidence            4578999987776322    123332     444556666654     4466765  678999999998 9999999999


Q ss_pred             CCcccc-h--------------hhcccCCCCCCCccccccc-CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccc
Q 015949          238 HSRVPV-K--------------NLLTIHPEDEVPVKNVSIR-RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQP  301 (397)
Q Consensus       238 ~SR~PV-k--------------Dll~~~~~~~~~v~~i~~r-~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~  301 (397)
                      ||++|| +              |++. ......+++++|.+ ++++|++++++.++++.|++.+.+.++|||++|...|+
T Consensus       144 ~s~~pVvd~g~~~~lvGiVt~rDl~~-~~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~Gi  222 (511)
T 3usb_A          144 ISGVPVVNNLDERKLVGIITNRDMRF-IQDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGL  222 (511)
T ss_dssp             CSEEEEESCTTTCBEEEEEEHHHHTT-CCCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             CcEEEEEecCCCCEEEEEEEehHhhh-hccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeee
Confidence            999999 2              3332 12345789999665 89999999999999999999999999999999999999


Q ss_pred             cccc
Q 015949          302 HVPI  305 (397)
Q Consensus       302 ~~~~  305 (397)
                      ++..
T Consensus       223 IT~~  226 (511)
T 3usb_A          223 ITIK  226 (511)
T ss_dssp             EEHH
T ss_pred             ccHH
Confidence            9875

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.85  E-value=1.3e-09  Score=94.92  Aligned_cols=100  Identities=18%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC------------CCCCCC
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH------------PEDEVP  256 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~------------~~~~~~  256 (397)
                      ...+|+++|++  ++++++.++++. ++++.+.+++++++||             +|++...            .....+
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   79 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccC
Confidence            45789999997  677999999998 9999999999999999             4555321            123567


Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.++|.+++++|++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus        80 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~  127 (160)
T 2o16_A           80 LFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDS  127 (160)
T ss_dssp             HHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHH
T ss_pred             HHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHH
Confidence            88887778899999999999999999999999999999 9999999984

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.85  E-value=1.2e-09  Score=96.47  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             cccceecccceeCcc--EEEE--eCCCChhHHHHHHHHhcCCCcccc---------------hhhcccC-----------
Q 015949          201 LSEKTARDAMTPASE--TFAI--DVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIH-----------  250 (397)
Q Consensus       201 l~~~~V~diMtPr~~--v~~L--~~~~tl~~e~l~~i~~~g~SR~PV---------------kDll~~~-----------  250 (397)
                      +.+.+|+|+|+|..+  ++++  +.++++. ++++.+.+++++++||               +|++...           
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            368899999999754  6777  9999998 9999999999999999               3343321           


Q ss_pred             -----------------CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 -----------------PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 -----------------~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                       .....++.++|.+++++|++++++.++++.|.+.+.+.++|+| .|...|+++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~  157 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKK  157 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHH
Confidence                             0134578888668999999999999999999999999999999 79999999984

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.80  E-value=1e-09  Score=113.89  Aligned_cols=130  Identities=8%  Similarity=0.080  Sum_probs=21.1

Q ss_pred             ccccHHHHHHHHHhhccccccCCCC----C-HHHHHHHHHhhccccceeccc-ceeCccEEEEeCCCChhHHHHHHHHhc
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGEL----T-RDETTIITGALELSEKTARDA-MTPASETFAIDVSFKLDRNLMRLVLEK  236 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l----~-~~E~~ii~~~l~l~~~~V~di-MtPr~~v~~L~~~~tl~~e~l~~i~~~  236 (397)
                      ..++++++...+...+    ..|.|    + +++++++.++..      .++ |+|  ++++++.++++. ++++.+.++
T Consensus        60 ~~vt~~~la~~la~~g----g~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~  126 (503)
T 1me8_A           60 QSVSGEKMAIALAREG----GISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRT  126 (503)
T ss_dssp             TTTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHHT------TTC----------------------------
T ss_pred             hhhhHHHHHHHHHhCC----CcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHc
Confidence            3568899987776321    11222    2 466777766554      456 998  888999999998 999999999


Q ss_pred             CCCcccc--h-----hhccc---------CCCCCCCcccccccC--CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCc
Q 015949          237 GHSRVPV--K-----NLLTI---------HPEDEVPVKNVSIRR--IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDR  298 (397)
Q Consensus       237 g~SR~PV--k-----Dll~~---------~~~~~~~v~~i~~r~--~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~  298 (397)
                      +|+++||  .     .++++         ......+++++|.++  +++|++++++.++++.|++++.+.++|||++|..
T Consensus       127 ~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~l  206 (503)
T 1me8_A          127 THNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL  206 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            9999999  2     13221         112346788986555  9999999999999999999999999999999999


Q ss_pred             ccccccc
Q 015949          299 EQPHVPI  305 (397)
Q Consensus       299 ~g~~~~~  305 (397)
                      .|+++..
T Consensus       207 vGiIT~~  213 (503)
T 1me8_A          207 RYIVFRK  213 (503)
T ss_dssp             -------
T ss_pred             EEEEEec
Confidence            9999985

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.79  E-value=9.4e-10  Score=113.91  Aligned_cols=130  Identities=17%  Similarity=0.211  Sum_probs=24.6

Q ss_pred             ccccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949          163 ALFRRAELKTLVDLHGNEAGKGGELT-----RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG  237 (397)
Q Consensus       163 ~~~s~eEL~~lv~~~~~e~~~~G~l~-----~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g  237 (397)
                      ..+|++++...+...+    .-|.|.     +++.+++.++     ++++++|++  +.++++.++++. ++++++.+++
T Consensus        51 ~tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            4578999998876432    234444     5667777777     457889985  678999999998 9999999999


Q ss_pred             CCcccc------------hhhcccCCCCCCCcccccc-c-CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccc
Q 015949          238 HSRVPV------------KNLLTIHPEDEVPVKNVSI-R-RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHV  303 (397)
Q Consensus       238 ~SR~PV------------kDll~~~~~~~~~v~~i~~-r-~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~  303 (397)
                      |+++||            +|+... .....++.++|. + +++++++++++.++++.|++++.+.++|||++|...|+++
T Consensus       119 ~s~~pVvd~g~lvGIVt~rDl~~~-~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT  197 (490)
T 4avf_A          119 FSGFPVVEQGELVGIVTGRDLRVK-PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVT  197 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEECCEEEEEEEhHHhhhc-cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Confidence            999999            444322 223567999954 3 6999999999999999999999999999999999999999


Q ss_pred             cc
Q 015949          304 PI  305 (397)
Q Consensus       304 ~~  305 (397)
                      ..
T Consensus       198 ~~  199 (490)
T 4avf_A          198 FR  199 (490)
T ss_dssp             --
T ss_pred             hH
Confidence            85

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.78  E-value=2e-09  Score=90.97  Aligned_cols=103  Identities=13%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             ccccceecc---cceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-----CCCCCcc
Q 015949          200 ELSEKTARD---AMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-----EDEVPVK  258 (397)
Q Consensus       200 ~l~~~~V~d---iMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-----~~~~~v~  258 (397)
                      ++-++++++   +|+  .++++++.++++. ++++.+.+++++++||             +|++....     ....++.
T Consensus         4 ~~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             chhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            345678888   776  4788999999998 9999999999999999             45544221     1245788


Q ss_pred             ccccc------CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          259 NVSIR------RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       259 ~i~~r------~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|.+      ++++|++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~  133 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS  133 (144)
T ss_dssp             HHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             HHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHH
Confidence            87555      689999999999999999999999999999999999999884

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.68  E-value=3.3e-08  Score=90.63  Aligned_cols=97  Identities=13%  Similarity=0.019  Sum_probs=84.3

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSE  270 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe  270 (397)
                      -+++++|++  ++++++.++++. ++++.+.+++++++||             +|++....  ..+++++|.++++++++
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v~~   87 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVHE   87 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEET
T ss_pred             cCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEECC
Confidence            467888886  677999999998 9999999999999999             44443322  45799997788999999


Q ss_pred             CCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          271 TMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       271 ~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        88 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~  122 (213)
T 1vr9_A           88 EDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLH  122 (213)
T ss_dssp             TSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHH
T ss_pred             CCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHH
Confidence            99999999999999999999999999999999985

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.67  E-value=7.6e-09  Score=89.41  Aligned_cols=107  Identities=9%  Similarity=0.081  Sum_probs=83.3

Q ss_pred             HHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-h--------------hhcccCCC-------
Q 015949          195 ITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-K--------------NLLTIHPE-------  252 (397)
Q Consensus       195 i~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-k--------------Dll~~~~~-------  252 (397)
                      ..+.+.+.+.+|+|+|++  ++++++.++++. ++++.+.+++++++|| .              |++.....       
T Consensus         4 ~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~   80 (164)
T 2pfi_A            4 LGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP   80 (164)
T ss_dssp             ------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------
T ss_pred             ccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCC
Confidence            345567889999999998  677999999998 9999999999999999 2              23221111       


Q ss_pred             -CCCCcccccccC------CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          253 -DEVPVKNVSIRR------IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 -~~~~v~~i~~r~------~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                       ...++.++|.++      +++|++++++.++++.|.+.+.+.++|+| .|...|+++..
T Consensus        81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~  139 (164)
T 2pfi_A           81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWV  139 (164)
T ss_dssp             CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHH
T ss_pred             cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHH
Confidence             124577775444      78999999999999999999999999999 59999999984

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.49  E-value=6.3e-08  Score=93.19  Aligned_cols=103  Identities=13%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             ccccceeccc---ceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCCcc
Q 015949          200 ELSEKTARDA---MTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVPVK  258 (397)
Q Consensus       200 ~l~~~~V~di---MtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~v~  258 (397)
                      .+.+.+++++   |+  .++++++.++++. ++++.+.+++++++||             +|++....+     ...++.
T Consensus       183 ~~~~~~v~~~~~~m~--~~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~  259 (323)
T 3t4n_C          183 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVG  259 (323)
T ss_dssp             GGCCSBGGGTTCSBC--TTCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHH
T ss_pred             hhhhCcHHHcCCCCC--CCcEEECCCCcHH-HHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHH
Confidence            3566799999   65  4778999999998 9999999999999999             555543211     245788


Q ss_pred             ccccc------CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          259 NVSIR------RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       259 ~i~~r------~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|.+      +++++++++++.++++.|.+.+.|.++|+|++|...|+++..
T Consensus       260 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~  312 (323)
T 3t4n_C          260 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS  312 (323)
T ss_dssp             HHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHH
T ss_pred             HHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHH
Confidence            88655      689999999999999999999999999999999999999874

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.49  E-value=5.7e-08  Score=101.22  Aligned_cols=100  Identities=13%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             cccceecccceeCccEEEEeCC-CChhHHHHHHHHhcCCCcccc--------------hhhccc----CCCCCCCccccc
Q 015949          201 LSEKTARDAMTPASETFAIDVS-FKLDRNLMRLVLEKGHSRVPV--------------KNLLTI----HPEDEVPVKNVS  261 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~-~tl~~e~l~~i~~~g~SR~PV--------------kDll~~----~~~~~~~v~~i~  261 (397)
                      +.+.+|+|+|++  ++++++.+ +++. ++++.+.+++++++||              +|++..    ......++.++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            557899999996  67799999 9998 9999999999999999              455532    122357899998


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCceEEEEEec----CCCcccccccc
Q 015949          262 IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH----QNDREQPHVPI  305 (397)
Q Consensus       262 ~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE----yG~~~g~~~~~  305 (397)
                      .+++++|++++++.++++.|++.+  +++|||+    +|...|+++..
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~  503 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKL  503 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHH
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHH
Confidence            799999999999999999997654  5799999    69999999984

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.45  E-value=8e-08  Score=89.39  Aligned_cols=51  Identities=16%  Similarity=0.105  Sum_probs=46.3

Q ss_pred             CCcccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|. +++.++++++++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus       185 ~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~  236 (245)
T 3l2b_A          185 LPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARF  236 (245)
T ss_dssp             SBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC
T ss_pred             CceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHH
Confidence            34667766 7999999999999999999999999999999999999999984

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.30  E-value=4.2e-07  Score=87.77  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             ccceecc---cceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCCcccc
Q 015949          202 SEKTARD---AMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVPVKNV  260 (397)
Q Consensus       202 ~~~~V~d---iMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~v~~i  260 (397)
                      ...++++   +|++  ++.+++.++++. ++++.+.+++++++||             +|++....+     ...++.++
T Consensus       180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~  256 (334)
T 2qrd_G          180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEA  256 (334)
T ss_dssp             CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHH
T ss_pred             hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHH
Confidence            4678899   4774  677999999998 9999999999999999             455543211     24567787


Q ss_pred             cc------cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SI------RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~------r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |.      +++++|++++++.++++.|.+.+.+.++|+|++|...|+++..
T Consensus       257 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~  307 (334)
T 2qrd_G          257 LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA  307 (334)
T ss_dssp             HTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHH
T ss_pred             HhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHH
Confidence            55      3789999999999999999999999999999999999999984

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.24  E-value=8.6e-07  Score=85.57  Aligned_cols=101  Identities=15%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             cceeccc--ceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCCccccc-
Q 015949          203 EKTARDA--MTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVPVKNVS-  261 (397)
Q Consensus       203 ~~~V~di--MtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~v~~i~-  261 (397)
                      ..+++++  |+ ..++++++.++++. ++++.+.+++++++||             +|++.....     ...++.++| 
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~  266 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ  266 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGG
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHh
Confidence            3556666  44 25788999999998 9999999999999999             566654321     145677774 


Q ss_pred             -----ccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          262 -----IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       262 -----~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                           .+++++|++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus       267 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~  315 (330)
T 2v8q_E          267 HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS  315 (330)
T ss_dssp             GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHH
Confidence                 37899999999999999999999999999999999999999984

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.24  E-value=7.8e-07  Score=73.94  Aligned_cols=51  Identities=10%  Similarity=-0.069  Sum_probs=47.6

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.++++.+++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~   54 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLS   54 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHH
Confidence            46789998899999999999999999999999999999999 9999999885

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.16  E-value=7.6e-07  Score=74.35  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             CCCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          254 EVPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      +.+++++|.  ++++.+++++++.++++.|++++.+..+|+|+. |...|+++..
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~   58 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAK   58 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGG
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHH
Confidence            456788865  567899999999999999999999999999986 9999999985

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.15  E-value=4.1e-07  Score=93.93  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=7.3

Q ss_pred             CCHHH-HHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC
Q 015949          187 LTRDE-TTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE  252 (397)
Q Consensus       187 l~~~E-~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~  252 (397)
                      ++.++ ++.+..+.     +++++|++  ++++++.++++. ++++.+.+++++.+||             +|++.. ..
T Consensus        82 ~~~e~~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~-~~  152 (494)
T 1vrd_A           82 LTPDEQARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE-KN  152 (494)
T ss_dssp             SCHHHHHHHHHHHH-----TC-----------------------------------------------------------
T ss_pred             CChHHHHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh-cC
Confidence            44433 45555554     46789997  788999999998 9999999999999999             334321 12


Q ss_pred             CCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          253 DEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ...++.++|.+  ++++|++++++.++++.|++.+.+..+|||+.|...|+++..
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~  207 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIK  207 (494)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHH
Confidence            34678899665  899999999999999999999999999999999999999985

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.09  E-value=7.3e-07  Score=78.17  Aligned_cols=52  Identities=15%  Similarity=0.149  Sum_probs=48.3

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+++++|.+++..|++++++.++++.|++++.+-++|+|+.|...|+++..
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~   68 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITES   68 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGG
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHH
Confidence            4578889888999999999999999999999999999999999999999874

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.09  E-value=3e-06  Score=73.84  Aligned_cols=50  Identities=6%  Similarity=-0.123  Sum_probs=43.2

Q ss_pred             Ccccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++|.  .++..|+++.++.++++.|.+++....+|+|+.|...|+++..
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~   67 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLR   67 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHH
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEec
Confidence            3566643  4689999999999999999999999999999999999999874

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.08  E-value=2e-06  Score=73.28  Aligned_cols=52  Identities=13%  Similarity=0.045  Sum_probs=47.0

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ..+++++|.+  +++.+++++++.++++.|++.+.+..+|+|+. |...|+++..
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~   76 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIR   76 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHH
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHH
Confidence            4678899766  78999999999999999999999999999998 8999999984

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.05  E-value=1.6e-06  Score=70.95  Aligned_cols=50  Identities=8%  Similarity=0.020  Sum_probs=45.9

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.++++.+++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~   51 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSW   51 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHH
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHH
Confidence            46778778899999999999999999999999999999999999999984

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.03  E-value=1.2e-06  Score=72.74  Aligned_cols=51  Identities=12%  Similarity=0.135  Sum_probs=45.0

Q ss_pred             CCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          255 VPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      .+++++|.+  +++.+++++++.++++.|++++.+.++|+|+. |...|+++..
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~   56 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK   56 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGG
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHH
Confidence            457788653  38899999999999999999999999999998 8999999985

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.00  E-value=5.9e-06  Score=78.10  Aligned_cols=44  Identities=11%  Similarity=-0.146  Sum_probs=39.5

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |-..|+.|.+++++.++...|++.+.+.++|++ .|...|+++..
T Consensus       195 md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrk  238 (250)
T 2d4z_A          195 IDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALA  238 (250)
T ss_dssp             EECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHH
Confidence            345677899999999999999999999999998 59999999984

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.99  E-value=1.7e-06  Score=72.14  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=43.7

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ..+++++|.+  ++.++++++++.++++.|++++.+..+|+|+. |...|+++..
T Consensus         5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~   59 (130)
T 3i8n_A            5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRL   59 (130)
T ss_dssp             --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHH
T ss_pred             cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHH
Confidence            3568888653  35589999999999999999999999999987 9999999984

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.99  E-value=3.4e-06  Score=74.20  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             CCCCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          253 DEVPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ...+++++|.  ++++.+++++++.++++.|++.+...++|+|+. |...|+++..
T Consensus        40 ~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~   95 (172)
T 3lhh_A           40 DERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAK   95 (172)
T ss_dssp             ---CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHH
T ss_pred             CCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHH
Confidence            3467889976  678899999999999999999999999999998 9999999884

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.97  E-value=7.2e-06  Score=74.81  Aligned_cols=52  Identities=8%  Similarity=0.017  Sum_probs=46.5

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhC---CceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKG---HSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~---~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..++++|.++++.|++++++.++++.|++.   +.+..+|+|+.|...|+++..
T Consensus        53 ~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~  107 (205)
T 3kxr_A           53 ENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRY  107 (205)
T ss_dssp             TTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHH
T ss_pred             cchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHH
Confidence            3468888878899999999999999999997   788999999999999999874

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.96  E-value=6.2e-06  Score=73.04  Aligned_cols=52  Identities=10%  Similarity=0.048  Sum_probs=45.6

Q ss_pred             CCCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          254 EVPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      ..+++++|.  +++++|++++++.++++.|++.+....+|+|+. |...|+++..
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~   89 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAK   89 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHH
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHH
Confidence            456888863  468899999999999999999999999999986 8999999984

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.95  E-value=1.8e-06  Score=72.84  Aligned_cols=51  Identities=10%  Similarity=0.126  Sum_probs=45.1

Q ss_pred             CCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949          255 VPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~  305 (397)
                      .+++++|.  +++..+++++++.++++.|++.+.+..+|+|+. |...|+++..
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~   56 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAK   56 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGG
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHH
Confidence            45778865  567999999999999999999999999999998 8999999985

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.85  E-value=2.2e-05  Score=65.17  Aligned_cols=51  Identities=20%  Similarity=0.115  Sum_probs=45.6

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+++++|.++++.+++++++.++++.|++.+.+.++|+| .|...|+++..
T Consensus         3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~   53 (133)
T 2ef7_A            3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITER   53 (133)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHH
Confidence            3568888777899999999999999999999999999999 78899999884

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.81  E-value=2.8e-06  Score=71.09  Aligned_cols=50  Identities=12%  Similarity=0.105  Sum_probs=43.2

Q ss_pred             Ccccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEec-CCCcccccccc
Q 015949          256 PVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRH-QNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE-yG~~~g~~~~~  305 (397)
                      +++++|.  ++++.+++++++.++++.|++++.+..+|+|+ .|...|+++..
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~   55 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVR   55 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHH
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHH
Confidence            4677753  46889999999999999999999999999975 68999999874

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.80  E-value=5.5e-06  Score=70.01  Aligned_cols=52  Identities=10%  Similarity=-0.035  Sum_probs=46.7

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+  +++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~   57 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDY   57 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHH
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHH
Confidence            3568888655  689999999999999999999999999999999999999975

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.79  E-value=3e-06  Score=87.95  Aligned_cols=99  Identities=11%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--h-----hhccc---------CC-CCCCCccccccc--C
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K-----NLLTI---------HP-EDEVPVKNVSIR--R  264 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k-----Dll~~---------~~-~~~~~v~~i~~r--~  264 (397)
                      ++++++|++  +.++++.++++. ++++.+.+++++++||  +     .++++         .. ....++.++|.+  +
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~  184 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIE  184 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBC
T ss_pred             hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCC
Confidence            478899996  567899999998 9999999999999999  2     12221         10 234678888666  7


Q ss_pred             CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++|++++++.++++.|++.+.+..+|||+.|...|+++..
T Consensus       185 ~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~  225 (514)
T 1jcn_A          185 LVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIART  225 (514)
T ss_dssp             CCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CC
T ss_pred             CeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHH
Confidence            99999999999999999999999999999999999999975

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.78  E-value=1.4e-05  Score=67.35  Aligned_cols=51  Identities=16%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCC--Ccccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN--DREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG--~~~g~~~~~  305 (397)
                      .+++++|.++++.+++++++.++++.|++.+.+.++|+|+.|  ...|+++..
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~   57 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSER   57 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHH
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHH
Confidence            467888778899999999999999999999999999999988  899999874

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.76  E-value=6.3e-06  Score=68.83  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=47.1

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.++++.+++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~   58 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTT   58 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHH
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHH
Confidence            4568888768899999999999999999999999999999989999999874

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.72  E-value=6.7e-05  Score=62.53  Aligned_cols=52  Identities=10%  Similarity=0.075  Sum_probs=47.3

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.++++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~   57 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKS   57 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Confidence            3568888778899999999999999999999999999999989999999874

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.72  E-value=7.8e-06  Score=70.15  Aligned_cols=51  Identities=10%  Similarity=0.004  Sum_probs=44.0

Q ss_pred             CCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEE-ec-CCCcccccccc
Q 015949          255 VPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVV-RH-QNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVV-DE-yG~~~g~~~~~  305 (397)
                      .+++++|.+  +++.+++++++.++++.|++++.+.++|+ |+ .|...|+++..
T Consensus        20 ~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~   74 (153)
T 3oco_A           20 KVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNY   74 (153)
T ss_dssp             CBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHH
T ss_pred             CEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHH
Confidence            467888653  78999999999999999999999999999 64 58999999884

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.69  E-value=1.1e-05  Score=68.51  Aligned_cols=51  Identities=16%  Similarity=0.040  Sum_probs=45.7

Q ss_pred             CCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.  ++++.+++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~   67 (150)
T 3lqn_A           15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTA   67 (150)
T ss_dssp             CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHH
Confidence            46778865  4589999999999999999999999999999999999999985

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.68  E-value=5.2e-05  Score=67.02  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=46.8

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.++++++++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~   59 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER   59 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHH
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Confidence            468888778899999999999999999999999999999889999999884

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.67  E-value=5.2e-05  Score=63.08  Aligned_cols=49  Identities=6%  Similarity=0.116  Sum_probs=44.1

Q ss_pred             Ccccccc---cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSI---RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~---r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.   ++++.+++++++.++++.|++++.+.++|+| .|...|+++..
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~   58 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTER   58 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehH
Confidence            5778866   7899999999999999999999999999999 78899999874

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.65  E-value=2.1e-05  Score=67.79  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=45.5

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++| ++++.|++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        16 ~~~v~~im-~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~   66 (159)
T 3fv6_A           16 KLQVKDFQ-SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRK   66 (159)
T ss_dssp             TCBGGGSC-BCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             hCCHHHHc-CCCEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHH
Confidence            35688885 5567999999999999999999999999999999999999984

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.64  E-value=1.8e-05  Score=67.57  Aligned_cols=52  Identities=15%  Similarity=0.024  Sum_probs=46.7

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+  +++.++++.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~   63 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMT   63 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHH
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHH
Confidence            4568888654  889999999999999999999999999999999999999884

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.64  E-value=3.2e-05  Score=64.65  Aligned_cols=51  Identities=10%  Similarity=0.249  Sum_probs=45.0

Q ss_pred             CCccc---ccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKN---VSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~---i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++   +|.++++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~   61 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY   61 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHH
Confidence            34555   6568899999999999999999999999999999989999999884

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.63  E-value=1.2e-05  Score=69.34  Aligned_cols=52  Identities=12%  Similarity=0.059  Sum_probs=45.8

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCC-Ccccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN-DREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG-~~~g~~~~~  305 (397)
                      ..+++++|.+  +++.+++++++.++++.|++.+.+..+|+|+.| ...|+++..
T Consensus        37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~   91 (156)
T 3oi8_A           37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAK   91 (156)
T ss_dssp             TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGG
T ss_pred             CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHH
Confidence            4678898654  689999999999999999999999999999885 899999985

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.63  E-value=4.4e-05  Score=66.18  Aligned_cols=52  Identities=12%  Similarity=0.018  Sum_probs=46.2

Q ss_pred             CCCccccccc---CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIR---RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r---~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+   +++.|++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~   77 (165)
T 3fhm_A           23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTER   77 (165)
T ss_dssp             SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence            3568888542   699999999999999999999999999999999999999884

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.62  E-value=1.3e-05  Score=69.93  Aligned_cols=51  Identities=10%  Similarity=-0.025  Sum_probs=45.9

Q ss_pred             CCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.+  +++.|++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~   56 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDY   56 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHH
Confidence            457788655  699999999999999999999999999999999999999985

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.58  E-value=1e-05  Score=67.14  Aligned_cols=51  Identities=6%  Similarity=-0.011  Sum_probs=46.1

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.++++.+++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~   58 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDR   58 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHH
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHH
Confidence            467888778899999999999999999999999999999989999999874

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.55  E-value=5.8e-05  Score=71.63  Aligned_cols=51  Identities=12%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhC-----CceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKG-----HSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~-----~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.++++.|++++++.++++.|++.     +.+..+|+|+.|...|+++..
T Consensus       135 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~  190 (278)
T 2yvy_A          135 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLR  190 (278)
T ss_dssp             TBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHH
T ss_pred             chHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHH
Confidence            457888777899999999999999999986     678899999999999999874

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.54  E-value=1.5e-05  Score=68.53  Aligned_cols=52  Identities=15%  Similarity=0.004  Sum_probs=46.3

Q ss_pred             CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+  +++.++++.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~   66 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN   66 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHH
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHH
Confidence            3567888655  799999999999999999999999999999999999999874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.47  E-value=1.5e-05  Score=65.21  Aligned_cols=49  Identities=20%  Similarity=0.277  Sum_probs=43.9

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.++++.+++++++.++++.|++++.+.++|+| .|...|+++..
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~   50 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTW   50 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHH
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHH
Confidence            35677777899999999999999999999999999999 79999999874

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.46  E-value=5.6e-05  Score=64.71  Aligned_cols=52  Identities=12%  Similarity=0.064  Sum_probs=47.2

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec--CCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH--QNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE--yG~~~g~~~~~  305 (397)
                      ..+++++|.++++.+++++++.++++.|.+++.+.++|+|+  .|...|+++..
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~   65 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRA   65 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHH
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHH
Confidence            46788887788999999999999999999999999999996  79999999884

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.43  E-value=3e-05  Score=80.15  Aligned_cols=108  Identities=12%  Similarity=0.219  Sum_probs=7.7

Q ss_pred             HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-h------hhcccC-------CCCCC
Q 015949          190 DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-K------NLLTIH-------PEDEV  255 (397)
Q Consensus       190 ~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-k------Dll~~~-------~~~~~  255 (397)
                      ++.+++..+=....     .|+.  +.+++.++.|+. ++++++.+++||.+|| .      .|+++.       .+...
T Consensus       129 ~Qa~~V~~VKr~e~-----g~i~--dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~  200 (556)
T 4af0_A          129 EQAAMVRRVKKYEN-----GFIT--DPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAET  200 (556)
T ss_dssp             HHHHHHHHHHHCCC------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhccc-----CccC--CCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccce
Confidence            44566766654433     4442  567999999998 9999999999999999 1      233321       12357


Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.+++..+++..++.++.+.|++++..-++|||+.|...|+++..
T Consensus       201 ~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~k  250 (556)
T 4af0_A          201 PIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARS  250 (556)
T ss_dssp             --------------------------------------------------
T ss_pred             EhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEec
Confidence            89999888899999999999999999999999999999999999999985

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.43  E-value=0.0001  Score=63.59  Aligned_cols=52  Identities=12%  Similarity=0.005  Sum_probs=47.2

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.++++.|+++.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~   55 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQR   55 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Confidence            3568888777899999999999999999999999999999999999999884

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.34  E-value=5.9e-05  Score=72.13  Aligned_cols=52  Identities=6%  Similarity=-0.014  Sum_probs=46.3

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhC-----CceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKG-----HSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~-----~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+++++|.++++.|++++++.++++.|++.     +.+.++|+|+.|...|+++..
T Consensus       136 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~  192 (286)
T 2oux_A          136 DETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLR  192 (286)
T ss_dssp             TTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHH
T ss_pred             hHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHH
Confidence            4568888778899999999999999999987     778899999999999999885

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.30  E-value=0.00015  Score=62.09  Aligned_cols=51  Identities=14%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceE-EEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHM-AVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hm-AiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.++++.|++++++.++++.|++.+.+. ++|+|+. ...|+++..
T Consensus        15 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~   66 (157)
T 1o50_A           15 VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVM   66 (157)
T ss_dssp             HHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHH
T ss_pred             cccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHH
Confidence            35678887788999999999999999999999999 9999987 899999884

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.28  E-value=0.00026  Score=64.38  Aligned_cols=51  Identities=14%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ....++|.++++.|++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        13 ~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~   63 (213)
T 1vr9_A           13 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKE   63 (213)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGG
T ss_pred             cCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHH
Confidence            346777788999999999999999999999999999999989999999985

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.23  E-value=0.00018  Score=61.50  Aligned_cols=49  Identities=16%  Similarity=0.108  Sum_probs=41.4

Q ss_pred             Ccccccc------cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSI------RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~------r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.      ++++.+++++++.++++.|++.+.+.++| ++.|...|+++..
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V-~~~~~~~Givt~~   62 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLV-VDGDDIAGIVTER   62 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEE-ESSSSEEEEEEHH
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEE-eeCCEEEEEEEHH
Confidence            4677754      45689999999999999999999998888 4579999999884

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.15  E-value=0.00019  Score=73.70  Aligned_cols=52  Identities=13%  Similarity=0.057  Sum_probs=45.3

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhC-----CceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKG-----HSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~-----~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+++++|.+++..+++++++.++++.|++.     +....+|+|+.|...|+++..
T Consensus       154 ~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~  210 (473)
T 2zy9_A          154 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLR  210 (473)
T ss_dssp             TTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHH
T ss_pred             CCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHH
Confidence            4568888778899999999999999999985     467889999989999999874

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.09  E-value=0.001  Score=57.97  Aligned_cols=52  Identities=15%  Similarity=0.062  Sum_probs=45.4

Q ss_pred             CCCcccccccC----CcEe--cCCCCHHHHHHHHHhCCceEEEEE--ecCCCcccccccc
Q 015949          254 EVPVKNVSIRR----IPRV--SETMPLYDILNEFQKGHSHMAVVV--RHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~----~~~V--pe~~~l~~lL~~fq~~~~hmAiVV--DEyG~~~g~~~~~  305 (397)
                      ..+++++|.+.    ++.|  ++++++.++++.|++++.+.++|+  |+.|...|+++..
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~   69 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR   69 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHH
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHH
Confidence            45678886554    6888  999999999999999999999999  8899999999874

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=96.89  E-value=0.00046  Score=71.62  Aligned_cols=52  Identities=8%  Similarity=0.057  Sum_probs=48.0

Q ss_pred             CCCcccccccCCcEecCC-CCHHHHHHHHHhCCceEEEEEe-cCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSET-MPLYDILNEFQKGHSHMAVVVR-HQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~-~~l~~lL~~fq~~~~hmAiVVD-EyG~~~g~~~~~  305 (397)
                      ..+++++|.+++..|+++ +++.++++.|++++.+..+|+| +.|...|+++..
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~  436 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQE  436 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHH
Confidence            467899988899999999 9999999999999999999999 889999999984

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=96.88  E-value=0.0003  Score=74.70  Aligned_cols=53  Identities=8%  Similarity=-0.044  Sum_probs=47.9

Q ss_pred             CCCCcccccc--cCCcEecCCCCHHHHHHHHH-hCCceEEEEEecCCCcccccccc
Q 015949          253 DEVPVKNVSI--RRIPRVSETMPLYDILNEFQ-KGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       253 ~~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq-~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ...+++++|.  +++..+++++++.++++.|+ +++.+..+|+|+.|...|+++..
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~  506 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRK  506 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHH
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHH
Confidence            3567899977  78999999999999999999 79999999999999999999985

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=96.45  E-value=0.00094  Score=69.25  Aligned_cols=48  Identities=13%  Similarity=-0.047  Sum_probs=43.1

Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec--CCCcccccccc
Q 015949          258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH--QNDREQPHVPI  305 (397)
Q Consensus       258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE--yG~~~g~~~~~  305 (397)
                      ++.|.+++..++++.++.++++.|++.+....+|+|+  .|...|+++..
T Consensus       116 ~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~r  165 (511)
T 3usb_A          116 ESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNR  165 (511)
T ss_dssp             SSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHH
T ss_pred             ccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEeh
Confidence            3455678899999999999999999999999999998  89999999874

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.37  E-value=0.0014  Score=67.77  Aligned_cols=49  Identities=10%  Similarity=-0.067  Sum_probs=43.4

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..++|.+++..++++.++.++++.|++.+..-.+|+|+.|...|+++..
T Consensus        91 ~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~r  139 (496)
T 4fxs_A           91 FEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGR  139 (496)
T ss_dssp             CCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHH
T ss_pred             cccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHH
Confidence            4556778999999999999999999999999999999999999999874

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=96.34  E-value=0.0029  Score=58.20  Aligned_cols=52  Identities=12%  Similarity=0.093  Sum_probs=48.5

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..+++++|.+++++++++.++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~   57 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTS   57 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHH
Confidence            4678999888999999999999999999999999999999999999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.23  E-value=0.00087  Score=68.94  Aligned_cols=49  Identities=12%  Similarity=-0.034  Sum_probs=0.5

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.++|.++++.|++++++.++++.|++.+....+|+|+.|...|+++..
T Consensus        97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~  145 (494)
T 1vrd_A           97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNR  145 (494)
T ss_dssp             C------------------------------------------------
T ss_pred             HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHH
Confidence            4667778899999999999999999999999999999999999999984

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=96.21  E-value=0.004  Score=52.52  Aligned_cols=51  Identities=18%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             CCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|.+  +++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~   80 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDG   80 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHH
Confidence            468888766  799999999999999999999999999999999999999985

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=95.90  E-value=0.0013  Score=67.98  Aligned_cols=45  Identities=11%  Similarity=-0.037  Sum_probs=0.0

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecC---CCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ---NDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy---G~~~g~~~~~  305 (397)
                      |.++++.+++++++.++++.|++.+....+|+|+.   |...|+++..
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~  150 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQR  150 (503)
T ss_dssp             ------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHH
Confidence            67789999999999999999999999999999997   8999999984

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.68  E-value=0.0063  Score=62.31  Aligned_cols=49  Identities=8%  Similarity=-0.132  Sum_probs=43.6

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEe--cCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVR--HQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD--EyG~~~g~~~~~  305 (397)
                      ++++|.+++..++++.++.++++.|++.+..-.+|+|  +.|...|+++..
T Consensus        92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~  142 (491)
T 1zfj_A           92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNR  142 (491)
T ss_dssp             HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHH
T ss_pred             HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHH
Confidence            3556677889999999999999999999999999999  889999999874

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.60  E-value=0.0022  Score=66.13  Aligned_cols=48  Identities=13%  Similarity=-0.000  Sum_probs=1.7

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.++|.+++..++++.++.++++.|++.+....+|+| .|...|+++..
T Consensus        90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~r  137 (490)
T 4avf_A           90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGR  137 (490)
T ss_dssp             CCC----------------------------------------------
T ss_pred             cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhH
Confidence            5566778899999999999999999999999999999 79999999984

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=95.57  E-value=0.0094  Score=44.76  Aligned_cols=41  Identities=10%  Similarity=0.021  Sum_probs=37.3

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.|.++.++.++++.|++++...++|+|+ |...|+++..
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~   41 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTER   41 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHH
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence            3578999999999999999999999999986 8999999973

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=94.97  E-value=0.021  Score=42.75  Aligned_cols=53  Identities=11%  Similarity=0.266  Sum_probs=41.4

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhccc-CCC----CCCCcccccccCCcEe
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTI-HPE----DEVPVKNVSIRRIPRV  268 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~-~~~----~~~~v~~i~~r~~~~V  268 (397)
                      +++++++++++. ++.+.+.+++++.+||            +|++.. ..+    .+.+++++|.+++..|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            367999999998 9999999999999999            677642 211    2467899977777654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=94.82  E-value=0.0035  Score=64.79  Aligned_cols=50  Identities=8%  Similarity=-0.099  Sum_probs=24.0

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      .+.++|.++++.++++.++.++++.|++.+.+-.+|+|+   .|...|+++..
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~  161 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSR  161 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTT
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHH
Confidence            356777789999999999999999999999999999998   58999999984

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=94.67  E-value=0.0061  Score=62.56  Aligned_cols=47  Identities=9%  Similarity=-0.061  Sum_probs=0.4

Q ss_pred             ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+.|.+++..++++.++.++++.|++.+....+|+|+ |...|+++..
T Consensus        96 ~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~  142 (486)
T 2cu0_A           96 ERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKK  142 (486)
T ss_dssp             C-----------------------------------------------
T ss_pred             hhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHH
Confidence            3455678899999999999999999999888999999 9999999984

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=92.94  E-value=0.086  Score=49.33  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=47.1

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecC--CCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ--NDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy--G~~~g~~~~~  305 (397)
                      ...++++|.+++.+|.+++++.++.+.|++.+.+-.+|||+.  |...|+++..
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~   65 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRT   65 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHH
Confidence            467899988999999999999999999999999999999974  5689999885

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=91.45  E-value=0.036  Score=57.45  Aligned_cols=45  Identities=9%  Similarity=-0.166  Sum_probs=0.0

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~  305 (397)
                      ++.+|.++.++.++.++++.|++.+..-.+|+|+   .|...|+++..
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~R  191 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGR  191 (556)
T ss_dssp             ------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecc
Confidence            4788999999999999999999999888899886   67889999883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-05
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-04
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	4e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	5e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.001
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.004

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 34/131 (25%)

Query: 201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVP--------------VKNL 246
           +      D +  +S+    D S ++ +     ++  G    P              + + 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQV-KKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 247 LTI-------------------HPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSH 287
           + I                              S + +  +S    L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 288 MAVVVRHQNDR 298
              V+  ++  
Sbjct: 129 RLPVIDPESGN 139

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 254 EVPVKNVSI---RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTD 310
           ++P+ +++I     +     T P+ D++    +     +V +  +N              
Sbjct: 5   KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQ-GRVSSVPIIDENGYLINVYEAYDVLG 63

Query: 311 EREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITD 370
             +  +  D    + E  ++     +     + +  L        +  R        + D
Sbjct: 64  LIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIM----DNIRKARVHRFFVVD 119

Query: 371 DPQRMENGEWEAVGIITLEDVIEELL 396
           D  R+       VG++TL D+++ +L
Sbjct: 120 DVGRL-------VGVLTLSDILKYIL 138

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 13/142 (9%)

Query: 256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVR 315
           PVK     ++  + + + L   +    +       V+   N        +       +  
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV 62

Query: 316 VDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDPQRM 375
             +D          K  + +   N ++ D       + ++   +   S  L I +    +
Sbjct: 63  DKLDPDYF----YGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGS--LLILNKDNTI 116

Query: 376 ENGEWEAVGIITLEDVIEELLQ 397
                   GIIT  D++  L  
Sbjct: 117 -------RGIITERDLLIALHH 131

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 19/155 (12%), Positives = 42/155 (27%), Gaps = 11/155 (7%)

Query: 253 DEVPVKNVSIRRIPRVSETMPLYDILNEF-QKGHSHMAVVVRHQNDREQPHVPIEHSTDE 311
             V ++    R +  V E  PL   L          + VV    N              E
Sbjct: 2   KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSE 61

Query: 312 REVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDD 371
               +     +   E+    +               ++  +          +  + + + 
Sbjct: 62  IVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEV 121

Query: 372 PQRME----------NGEWEAVGIITLEDVIEELL 396
             +M            GE + +G+I   D+++ L+
Sbjct: 122 ALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 9/156 (5%), Positives = 29/156 (18%), Gaps = 39/156 (25%)

Query: 186 ELTRDETTIITGALE-LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV- 243
           ++   +   +      +  +T+ D +  +      D      +  + L+        P+ 
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFD-VTLFVKTSLSLLTLNNIVSAPLW 59

Query: 244 ------------------------------------KNLLTIHPEDEVPVKNVSIRRIPR 267
                                                    +   +              
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHV 303
           V     L D      K  +    ++    +     +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMI 155

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 21/143 (14%)

Query: 253 DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDER 312
           +E  VK     ++  V++   L DI     + +    +VV                    
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITER-------- 53

Query: 313 EVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHDANLHRGASTSKNWSRDFHSEVLHITDDP 372
                 D    + +      ++ +               + +    R F+   L + DD 
Sbjct: 54  ------DIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDK 107

Query: 373 QRMENGEWEAVGIITLEDVIEEL 395
             +        GII++ D+   +
Sbjct: 108 GNL-------KGIISIRDITRAI 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.4
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.33
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.22
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.15
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.09
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.06
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.06
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.05
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.02
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.99
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.99
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.98
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.95
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.94
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.93
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.89
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.89
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.88
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.83
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.82
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.8
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.77
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.76
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.71
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.49
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.41
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.31
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.19
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.16
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.13
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.12
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.06
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.06
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.04
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	97.99
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	97.95
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.93
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.92
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	97.91
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.88
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	97.88
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	97.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.79
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.61
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.54
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	97.54
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.28
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	96.78
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	95.11
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	88.99

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.40  E-value=9.4e-14  Score=121.80  Aligned_cols=110  Identities=11%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHhhcc-ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC-
Q 015949          187 LTRDETTIITGALEL-SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH-  250 (397)
Q Consensus       187 l~~~E~~ii~~~l~l-~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~-  250 (397)
                      +++.|+..++.+.+| .+.+++|+|+|..++++++.+.++. +++..+.+++++++||              +|++... 
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            456788899999985 9999999999999999999999998 9999999999999999              4554310 


Q ss_pred             --------CCC--------------CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCC
Q 015949          251 --------PED--------------EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND  297 (397)
Q Consensus       251 --------~~~--------------~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~  297 (397)
                              +..              .......|.+++++|++++++.++++.|.+++.|.++|+|+.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~  149 (179)
T d2ooxe1          81 YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE  149 (179)
T ss_dssp             HHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTT
T ss_pred             hccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCC
Confidence                    000              01122345688999999999999999999999999999999774

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=2e-13  Score=114.36  Aligned_cols=100  Identities=18%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC---------CCCCCCcccc
Q 015949          203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH---------PEDEVPVKNV  260 (397)
Q Consensus       203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~---------~~~~~~v~~i  260 (397)
                      |.||+++|+|..++++++.+++++ ++++.+.++|||++||             +|++...         .....++.++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~   79 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEV   79 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccc
Confidence            578999999999999999999998 9999999999999999             4554321         1124567888


Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |.++++++++++++.+++..|.++  ++.+|+|++|...|+++..
T Consensus        80 m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~~~Givt~~  122 (132)
T d1yava3          80 MLTDIPRLHINDPIMKGFGMVINN--GFVCVENDEQVFEGIFTRR  122 (132)
T ss_dssp             SBCSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCBEEEEEEHH
T ss_pred             ccccccccccchhHHHHHHHHHhC--CEEEEEccCCEEEEEEEHH
Confidence            778999999999999999999875  4588999999999999984

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.22  E-value=6e-12  Score=104.56  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=90.0

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccC---CCCCCCcccccccCC
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIH---PEDEVPVKNVSIRRI  265 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~---~~~~~~v~~i~~r~~  265 (397)
                      |++.+|+|+|++  +++++++++++. ++++.+.+++++++||            +|++...   .....++.++|.+++
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~   77 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASL   77 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECC
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhccccchhhhhhhhhc
Confidence            568899999987  788999999998 9999999999999999            5665431   223567889878899


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|++++++.++++.|++.+.+.++|+|++|...|+++..
T Consensus        78 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~  117 (127)
T d2ef7a1          78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIR  117 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             cccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHH
Confidence            9999999999999999999999999999999999999873

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=3.9e-12  Score=109.15  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCC---------CC----
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHP---------ED----  253 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~---------~~----  253 (397)
                      |.++|++|+|+|..++++++.+.++. ++++.+.+++++++||              +|++....         ..    
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            56889999999999999999999998 9999999999999999              44443200         00    


Q ss_pred             ------CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEe-cCCCcccccccc
Q 015949          254 ------EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVR-HQNDREQPHVPI  305 (397)
Q Consensus       254 ------~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD-EyG~~~g~~~~~  305 (397)
                            .....+.+.++++.+++++++.++++.|++.+.|.++|+| ++|.+.|++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~  147 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  147 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHH
Confidence                  1123456678889999999999999999999999999998 689999999984

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.09  E-value=1.3e-11  Score=103.68  Aligned_cols=99  Identities=17%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC------C----CCCCCcccc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH------P----EDEVPVKNV  260 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~------~----~~~~~v~~i  260 (397)
                      .+|+++|+|  ++++++.++|+. ++++.+.+++++++||             +|++...      .    ....+++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~i   78 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV   78 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHH
Confidence            478999999  578999999998 9999999999999999             3443321      0    124578888


Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |.++++++++++++.++++.|++.+.|.++|+|+.|.+.|+++..
T Consensus        79 m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~  123 (141)
T d3ddja1          79 MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITER  123 (141)
T ss_dssp             SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             hCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHH
Confidence            778899999999999999999999999999999999999999984

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=3.3e-11  Score=99.46  Aligned_cols=97  Identities=19%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSE  270 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe  270 (397)
                      .+|+|+|++  ++++++.++++. ++++.+.+++++++||             +|++..  ....++.++|.++++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~--~~~~~~~~~~~~~~~~v~~   75 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN--PDEEQLAMLVKRDVPVVKE   75 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTTCCEEEEEESSCC------------CCCBSCCCEEET
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh--hcccchhhccccceeecch
Confidence            368999998  677999999998 9999999999999999             445442  2345688887889999999


Q ss_pred             CCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          271 TMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       271 ~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus        76 ~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~  110 (122)
T d2yzqa2          76 NDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVG  110 (122)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             hhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHH
Confidence            99999999999999999999999999999999874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=1.6e-10  Score=94.96  Aligned_cols=96  Identities=14%  Similarity=0.018  Sum_probs=86.0

Q ss_pred             eecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCC
Q 015949          205 TARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSET  271 (397)
Q Consensus       205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~  271 (397)
                      +|++.|++  ++.+++.+++++ ++++.+.+++++.+||             +|++...  ...++.+++.+++++++++
T Consensus         2 ~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~--~~~~v~~~~~~~~~~v~~~   76 (121)
T d1vr9a3           2 KVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD--LDSSVFNKVSLPDFFVHEE   76 (121)
T ss_dssp             BGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC--TTSBSGGGCBCTTCCEETT
T ss_pred             CchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh--ccccccccccCccEEECCC
Confidence            68999997  666999999998 9999999999999999             5666542  3467888888899999999


Q ss_pred             CCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          272 MPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       272 ~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.++++.|++++.+.++|+||.|...|+++..
T Consensus        77 ~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~  110 (121)
T d1vr9a3          77 DNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLH  110 (121)
T ss_dssp             SBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHH
T ss_pred             CCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHH
Confidence            9999999999999999999999999999999874

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.05  E-value=6.8e-11  Score=98.50  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=84.9

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-----------hhhcccCC--------------CCCCCcc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-----------KNLLTIHP--------------EDEVPVK  258 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-----------kDll~~~~--------------~~~~~v~  258 (397)
                      .+|+++|+|  +..+++.++++. ++++.+.++|++++||           .|++....              ....+++
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPII   77 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGG
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEecceeceeeccchhhhhccccccchhhhhccccccCCHH
Confidence            368999998  667899999998 9999999999999999           23332110              0146788


Q ss_pred             cccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          259 NVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       259 ~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|.+++.++++++++.++++.|.+.+.|.++|+|+.|...|+++..
T Consensus        78 ~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~  124 (135)
T d3ddja2          78 DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTER  124 (135)
T ss_dssp             GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             HHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHH
Confidence            89888999999999999999999999999999999999999999984

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.02  E-value=7.3e-11  Score=97.93  Aligned_cols=99  Identities=13%  Similarity=0.067  Sum_probs=86.1

Q ss_pred             ceecccceeC-ccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccC---C--CCCCCcccccccCC
Q 015949          204 KTARDAMTPA-SETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIH---P--EDEVPVKNVSIRRI  265 (397)
Q Consensus       204 ~~V~diMtPr-~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~---~--~~~~~v~~i~~r~~  265 (397)
                      +||+|+|+.+ .+++++++++++. ++++++.+++++.+||            +|++...   .  ....++.++|.+++
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~   80 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   80 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeecccee
Confidence            5899999975 4799999999998 9999999999999999            6765421   1  12467889988999


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP  304 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~  304 (397)
                      +++.+++++.++++.|++.+.+..+|+|+ |...|+++.
T Consensus        81 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~GiIt~  118 (127)
T d2rc3a1          81 AYVDLNNTNEDCMALITEMRVRHLPVLDD-GKVIGLLSI  118 (127)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEH
T ss_pred             EEeccCccHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEH
Confidence            99999999999999999999999999995 999999886

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.99  E-value=2.4e-10  Score=96.63  Aligned_cols=99  Identities=15%  Similarity=0.199  Sum_probs=86.4

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-C----CCCCCcccccccCC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-P----EDEVPVKNVSIRRI  265 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-~----~~~~~v~~i~~r~~  265 (397)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||             +|++... +    ....+++++|.+++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~   79 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   79 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccc
Confidence            479999997  677999999998 9999999999999999             4554321 1    12457899988999


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++.+++++.++++.|.+++.+..+|+|+.|...|+++..
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~  119 (142)
T d1pvma4          80 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLT  119 (142)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHH
T ss_pred             ccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHH
Confidence            9999999999999999999999999999999999999984

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.99  E-value=9.3e-11  Score=98.69  Aligned_cols=98  Identities=18%  Similarity=0.132  Sum_probs=84.1

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC------------CCCCCCcc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH------------PEDEVPVK  258 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~------------~~~~~~v~  258 (397)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||             +|++...            .....++.
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~   78 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   78 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchh
Confidence            479999997  677999999998 9999999999999999             4554321            01246788


Q ss_pred             cccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          259 NVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       259 ~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++|.+++++|++++++.++++.|.+++.+..+|+|+ |...|+++..
T Consensus        79 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiit~~  124 (139)
T d2o16a3          79 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDS  124 (139)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHH
T ss_pred             HhhccccccccccchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHH
Confidence            887789999999999999999999999999999997 9999999873

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=1.1e-10  Score=96.26  Aligned_cols=98  Identities=13%  Similarity=0.172  Sum_probs=82.8

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc-CC----CCCCCcccccccCC
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI-HP----EDEVPVKNVSIRRI  265 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~-~~----~~~~~v~~i~~r~~  265 (397)
                      +||+|+|++  ++++++.++++. ++++.+.+++++++||             +|++.. ..    .....+.++|.+++
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~   77 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSI   77 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccc
Confidence            489999997  688999999998 9999999999999999             565432 11    12345677866788


Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++++++.++++.|.+++.+..+|+|+ |...|+++..
T Consensus        78 ~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~~lvGiit~~  116 (123)
T d1y5ha3          78 YYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEA  116 (123)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             eeeeecchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHH
Confidence            99999999999999999999999999997 8899998873

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.95  E-value=2.5e-10  Score=93.69  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=82.4

Q ss_pred             eecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccC----CCCCCCcccccccCCcEe
Q 015949          205 TARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIH----PEDEVPVKNVSIRRIPRV  268 (397)
Q Consensus       205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~----~~~~~~v~~i~~r~~~~V  268 (397)
                      +|+|+|++  ++++++.++|+. ++++.+.+++++.+||            +|++...    ...+.++.++|.+++++|
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccccccccceeEeeecccccccc
Confidence            47899997  778999999998 9999999999999999            6666531    123567899977899999


Q ss_pred             cCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949          269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP  304 (397)
Q Consensus       269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~  304 (397)
                      ++++++.++++.|++.+.+..+|+ +.|...|+++.
T Consensus        78 ~~~~~l~~a~~~m~~~~~~~l~V~-~~~~l~Givt~  112 (120)
T d1pbja3          78 SPRATIKEAAEKMVKNVVWRLLVE-EDDEIIGVISA  112 (120)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEH
T ss_pred             cchhHHHHHHHHHHHcCCeEEEEE-ECCEEEEEEEH
Confidence            999999999999999999987775 46999999987

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=4e-10  Score=95.61  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             eecccceeCccEEEEeCCCChhHHHHHHHHhcC-----CCcccc-------------hhhcccCCCCCCCcccccccCCc
Q 015949          205 TARDAMTPASETFAIDVSFKLDRNLMRLVLEKG-----HSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIP  266 (397)
Q Consensus       205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g-----~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~  266 (397)
                      ||+++|++  ++++++.+.|+. ++++.+.+++     .+.+||             +|++..  ....++.++|.++++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~--~~~~~v~~im~~~~~   76 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--DPRTRVAEIMNPKVV   76 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS--CTTCBSTTTSBSSCC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc--ccccchHHhcccCCc
Confidence            68999998  788999999998 9999998875     456677             455443  235678999888999


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++++++.++++.|++++.+.++|||+.|...|+++..
T Consensus        77 ~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~  115 (144)
T d2yvxa2          77 YVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVD  115 (144)
T ss_dssp             CEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHH
T ss_pred             cCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHH
Confidence            999999999999999999999999999999999999995

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.93  E-value=9.4e-10  Score=91.03  Aligned_cols=99  Identities=8%  Similarity=0.005  Sum_probs=81.7

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc---------------hhhcccC--CCCCCCcccccccCCc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIH--PEDEVPVKNVSIRRIP  266 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV---------------kDll~~~--~~~~~~v~~i~~r~~~  266 (397)
                      .+|+|+|++  +.++++.++++. ++++.+.+++++++||               .|++...  ..........+.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            379999985  678999999998 9999999999999999               3444321  1112223333478999


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.++.++.++++.|++++.+..+|+|+.|...|+++..
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~  116 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIR  116 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHH
Confidence            999999999999999999999999999999999999984

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.89  E-value=7.1e-10  Score=94.09  Aligned_cols=100  Identities=10%  Similarity=-0.058  Sum_probs=81.9

Q ss_pred             ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc---------------hhhcccC----------------
Q 015949          202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIH----------------  250 (397)
Q Consensus       202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV---------------kDll~~~----------------  250 (397)
                      .+.+|+|+|++  ++.+++.++++. ++++.+.+++|+.+||               .|++...                
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999996  788999999998 9999999999999999               2222110                


Q ss_pred             -------------CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 -------------PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 -------------~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                   ......+.++|.+++++|++++|+.++++.|++.+.+.++|+| .|...|+++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~  152 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALA  152 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHH
Confidence                         0012234556678899999999999999999999999999988 59999999874

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=8.4e-10  Score=93.84  Aligned_cols=102  Identities=14%  Similarity=0.087  Sum_probs=86.9

Q ss_pred             cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-----------------
Q 015949          201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-----------------  250 (397)
Q Consensus       201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-----------------  250 (397)
                      +++.+++++|..  ++++++.++++. ++++.+.+++++++||             .|++...                 
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~   77 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEE   77 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhh
Confidence            367899999986  699999999998 9999999999999999             3443210                 


Q ss_pred             -----------------CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 -----------------PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 -----------------~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                       .....++.++|.+++.+|++++++.++.+.|.+++.|..+|+|+.|...|+++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~  149 (156)
T d2yzqa1          78 EWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDF  149 (156)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHH
T ss_pred             hhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHH
Confidence                             0123467888888899999999999999999999999999999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.88  E-value=6.3e-10  Score=92.34  Aligned_cols=96  Identities=16%  Similarity=0.088  Sum_probs=83.7

Q ss_pred             eecccceeCccEEEEeCCCChhHHHHHHHHhcC-----CCcccc-------------hhhcccCCCCCCCcccccccCCc
Q 015949          205 TARDAMTPASETFAIDVSFKLDRNLMRLVLEKG-----HSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIP  266 (397)
Q Consensus       205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g-----~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~  266 (397)
                      ||..+|++  ++++++.+.|+. ++++.+.+++     .+.+||             ++++.  ...+.++.++|.++++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~--~~~~~~v~~im~~~~~   76 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV--NDDDTLIADILNERVI   76 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT--SCTTSBHHHHSBSCCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccc--ccccEEhhhhccCCCc
Confidence            68899997  788999999998 9999998875     567788             34433  2346789999888999


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++++.++++.|.+.+.+.++|||+.|...|+++..
T Consensus        77 ~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~  115 (127)
T d2ouxa2          77 SVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVD  115 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             cCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHH
Confidence            999999999999999999999999999999999999974

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.2e-09  Score=90.28  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             cccceeccccee-CccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCC-----
Q 015949          201 LSEKTARDAMTP-ASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVP-----  256 (397)
Q Consensus       201 l~~~~V~diMtP-r~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~-----  256 (397)
                      |-.+++++++.+ ..++++++.++++. ++++.+.+++++.+||             +|++.....     ...+     
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~   84 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL   84 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhcc
Confidence            345678888775 45799999999998 9999999999999999             466543211     1112     


Q ss_pred             -cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 -VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 -v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                       ....+..+++++++++++.++++.|++++.|.++|+|+.|...|+++..
T Consensus        85 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~  134 (145)
T d2v8qe1          85 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS  134 (145)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHH
Confidence             2233467888999999999999999999999999999999999999874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=3e-09  Score=88.48  Aligned_cols=98  Identities=14%  Similarity=0.232  Sum_probs=83.3

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--C--CCCCCcccccccCCc
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--P--EDEVPVKNVSIRRIP  266 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~--~~~~~v~~i~~r~~~  266 (397)
                      .+|+|+|+.  ++.+++.++++. ++++.+.+++++++||             +|++...  .  ..+.+++++|.++++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~   81 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI   81 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeeccccccc
Confidence            479999985  788999999998 9999999999999999             5555421  1  135679999888999


Q ss_pred             EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++.+++++.++++.|.+++.+..+| ++.|...|+++..
T Consensus        82 ~v~~~~~~~~~~~~m~~~~~~~l~V-~~~~~~vGivt~~  119 (132)
T d2yzia1          82 TANVNTPLGEVLRKMAEHRIKHILI-EEEGKIVGIFTLS  119 (132)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEE-EETTEEEEEEEHH
T ss_pred             ccCcchHHHHHHHHHHHcCCCEEEE-EECCEEEEEEEHH
Confidence            9999999999999999999987766 5569999999884

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.80  E-value=1.8e-09  Score=91.99  Aligned_cols=100  Identities=15%  Similarity=0.180  Sum_probs=82.3

Q ss_pred             eeccccee-CccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCCcccc-----
Q 015949          205 TARDAMTP-ASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVPVKNV-----  260 (397)
Q Consensus       205 ~V~diMtP-r~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~v~~i-----  260 (397)
                      +++++|.+ +.++++++.+.++. ++++.+.+++++++||             +|++.....     ...++.++     
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~   80 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRP   80 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeee
Confidence            57888886 78999999999998 9999999999999999             555543211     12333333     


Q ss_pred             -cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 -SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 -~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                       +..++.+++++.++.++++.|.+++.|.++|||++|...|+++..
T Consensus        81 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~  126 (153)
T d2ooxe2          81 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA  126 (153)
T ss_dssp             CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHH
T ss_pred             cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHH
Confidence             235667899999999999999999999999999999999999984

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.80  E-value=2.5e-09  Score=88.28  Aligned_cols=90  Identities=10%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc---------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILN  279 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV---------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~  279 (397)
                      +.+++++++++. ++++.+.+++++++||               +|++.....+......++.+++++++++.++.++++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            457899999998 9999999999999999               444443332222233344567889999999999999


Q ss_pred             HHHhCCceEEEEEecCCCcccccccc
Q 015949          280 EFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       280 ~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .|++.+.+..+|||+.|...|+++..
T Consensus        85 ~m~~~~~~~lpVVd~~g~lvGiiT~~  110 (126)
T d1zfja4          85 ILHEHRIEKLPLVDNSGRLSGLITIK  110 (126)
T ss_dssp             HHHHTTCSEEEEECTTSBEEEEEEHH
T ss_pred             HHHhcCCcEEEEEcCCCeEEEEEEHH
Confidence            99999999999999999999999984

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.2e-09  Score=92.76  Aligned_cols=100  Identities=16%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             ceecccceeCccE----EEEeCCCChhHHHHHHHHhcCCCcccc---------------hhhcccC--------------
Q 015949          204 KTARDAMTPASET----FAIDVSFKLDRNLMRLVLEKGHSRVPV---------------KNLLTIH--------------  250 (397)
Q Consensus       204 ~~V~diMtPr~~v----~~L~~~~tl~~e~l~~i~~~g~SR~PV---------------kDll~~~--------------  250 (397)
                      ..|+|+|+|+...    +.++.+.|++ ++.+++.+++|+++||               +|++...              
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            4689999998644    5667788998 9999999999999999               3443210              


Q ss_pred             --------------CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          251 --------------PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       251 --------------~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                                    .....+++++|.+++.+|++++++.++++.|.+.+.+.++|+| +|...|+++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~  149 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKK  149 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHH
Confidence                          0013457888778899999999999999999999999998765 79999999984

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2e-09  Score=90.16  Aligned_cols=104  Identities=11%  Similarity=0.125  Sum_probs=79.7

Q ss_pred             cccceeccc-ceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCC-----
Q 015949          201 LSEKTARDA-MTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVP-----  256 (397)
Q Consensus       201 l~~~~V~di-MtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~-----  256 (397)
                      +-.++++|+ +.+..++++++.++++. ++++.+.+++++++||             +|++.....     ....     
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~   81 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   81 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhh
Confidence            345778887 56678999999999998 9999999999999999             455442111     0111     


Q ss_pred             -cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 -VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 -v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                       ....+..++++|++++++.++++.|.+.+.|.++||||.|...|+++..
T Consensus        82 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~  131 (140)
T d2nyca1          82 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS  131 (140)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHH
Confidence             1222357788999999999999999999999999999999999999873

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=5.9e-09  Score=87.33  Aligned_cols=98  Identities=12%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-------------------C
Q 015949          204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-------------------P  251 (397)
Q Consensus       204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-------------------~  251 (397)
                      +.+.++|+.  +.++++.++++. ++++.+.++|++++||             +|++...                   .
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKR   80 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhh
Confidence            457788886  557999999998 9999999999999999             4554310                   0


Q ss_pred             CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          252 EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       252 ~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ....+++++ +++++++.+++++.++++.|++.+.|.++|||+.|...|+++..
T Consensus        81 ~~~~~~~~~-~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~  133 (145)
T d1o50a3          81 LIAKNASEI-MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSL  133 (145)
T ss_dssp             CSSCBHHHH-CBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             ccccCHHHH-cCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHH
Confidence            012334555 57888999999999999999999999999999999999999874

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=6.3e-08  Score=81.86  Aligned_cols=52  Identities=19%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.+++++|.|++.+|++++|+.++++.|++++..-.+|+|+.|...|+++..
T Consensus         3 ~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~   54 (156)
T d2yzqa1           3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDET   54 (156)
T ss_dssp             GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGG
T ss_pred             CCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeee
Confidence            3568889889999999999999999999999999999999999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.41  E-value=9.3e-09  Score=84.22  Aligned_cols=90  Identities=7%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             cEEEEeCCCChhHHHHHHHHhcCCCcccc----------------hhhcccCC-CCCCCccccc--ccCCcEecCCCCHH
Q 015949          215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV----------------KNLLTIHP-EDEVPVKNVS--IRRIPRVSETMPLY  275 (397)
Q Consensus       215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV----------------kDll~~~~-~~~~~v~~i~--~r~~~~Vpe~~~l~  275 (397)
                      +.+++++++++. ++.+++.+++++++||                +|+..... ....+...++  ..++..+++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            446899999998 9999999999999999                23322211 1123344443  23578899999999


Q ss_pred             HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++.|++++.+.++|||+.|...|+++..
T Consensus        84 ~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~  113 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVNENDELVAIIART  113 (120)
T ss_dssp             HHHHHTCSCC---CEEEETTTEEEEEECHH
T ss_pred             HHHHHHHHcCccEEEEEcCCCEEEEEEEHH
Confidence            999999999999999999999999999873

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.31  E-value=2.4e-07  Score=75.38  Aligned_cols=50  Identities=14%  Similarity=0.159  Sum_probs=46.9

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++|.++++.|+++.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~   51 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKE   51 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGG
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehh
Confidence            46788889999999999999999999999999999999999999999985

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.19  E-value=1.2e-07  Score=78.65  Aligned_cols=50  Identities=12%  Similarity=0.104  Sum_probs=46.3

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      |++++|.+++..|++++|+.++++.|++++.+..+|+|+.|...|+++..
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~   52 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVV   52 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccc
Confidence            57888888899999999999999999999999999999999999998873

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.16  E-value=5.1e-07  Score=73.99  Aligned_cols=50  Identities=14%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEE--ecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV--RHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVV--DEyG~~~g~~~~~  305 (397)
                      +++++|.++++.+++++++.++++.|++++.+..+|+  |+.|...|+++..
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~   53 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSER   53 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHH
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeee
Confidence            4788988999999999999999999999999999999  5667778887763

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=4.2e-07  Score=74.89  Aligned_cols=51  Identities=12%  Similarity=-0.055  Sum_probs=45.5

Q ss_pred             CCccccc--ccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          255 VPVKNVS--IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       255 ~~v~~i~--~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .+++++|  .+++.+|.++.++.++++.|.+.+.+-.+|+|+.|...|+++..
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~   54 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN   54 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHH
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcc
Confidence            4567776  46899999999999999999999999999999999999998763

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.12  E-value=1.1e-06  Score=71.56  Aligned_cols=50  Identities=14%  Similarity=-0.007  Sum_probs=34.4

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++|.++++++++++++.++++.|.+.+.+-.+|+|+.|...|+++..
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~   51 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVK   51 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESS
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcc
Confidence            36778888999999999999999999999999999999999999999984

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=1.9e-06  Score=71.56  Aligned_cols=49  Identities=16%  Similarity=0.127  Sum_probs=44.6

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +.++|-++|+.|++++|+.++++.|++++.+.++|+|+-|...|+++..
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~   54 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVM   54 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHH
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccc
Confidence            4566678889999999999999999999999999999999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.06  E-value=1.2e-06  Score=71.68  Aligned_cols=45  Identities=7%  Similarity=-0.146  Sum_probs=40.9

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEec--CCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH--QNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE--yG~~~g~~~~~  305 (397)
                      |+++|.+|++++++.++++.|.+++..-++|+|+  .|...|+++..
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~   49 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNR   49 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHH
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHH
Confidence            5788899999999999999999999999999998  56788999884

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.04  E-value=1.9e-06  Score=72.16  Aligned_cols=51  Identities=14%  Similarity=0.188  Sum_probs=45.7

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec--CCCccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH--QNDREQPHVP  304 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE--yG~~~g~~~~  304 (397)
                      ..+++++|.+++++|++++++.++++.|++++.+-.+|+|+  .|...|+++.
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~   62 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR   62 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchH
Confidence            56799999999999999999999999999999999999994  4677888765

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.99  E-value=3.2e-06  Score=68.99  Aligned_cols=51  Identities=20%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..++++|.++++++++++++.++++.|++.+.+..+|+|+ |+..|+++..
T Consensus         3 ~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Givt~~   53 (127)
T d2ef7a1           3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITER   53 (127)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred             ccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhcchh
Confidence            34688998889999999999999999999999999999987 8888998874

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.95  E-value=4.3e-06  Score=69.67  Aligned_cols=50  Identities=12%  Similarity=0.086  Sum_probs=46.6

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++|.+++..|++++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~   53 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER   53 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHH
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEee
Confidence            57888778899999999999999999999999999999999999999874

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.93  E-value=3.1e-06  Score=70.86  Aligned_cols=49  Identities=12%  Similarity=0.056  Sum_probs=43.4

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCC-----ceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGH-----SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~-----~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ...+|.+++.++++++++.++++.|++++     .+-.+|+|+.|...|+++..
T Consensus         3 aG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~   56 (144)
T d2yvxa2           3 AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLR   56 (144)
T ss_dssp             SGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHH
T ss_pred             cccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchh
Confidence            56788889999999999999999998774     67789999999999999874

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.92  E-value=2e-06  Score=72.42  Aligned_cols=43  Identities=9%  Similarity=0.170  Sum_probs=40.6

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.+++++.++++.|.+++....+|+|+.|...|+++..
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~   54 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESV   54 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHH
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEee
Confidence            5789999999999999999999999999999999999999874

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=6.2e-07  Score=72.98  Aligned_cols=50  Identities=6%  Similarity=-0.011  Sum_probs=46.1

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++|.++++++.+++++.++++.|++++.+.++|+|+.|...|+++..
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~   51 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDR   51 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhh
Confidence            56788778999999999999999999999999999999999999999863

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=9.7e-06  Score=67.17  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=41.3

Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          262 IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       262 ~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      .++++.|.++.|+.++++.|.+.+.+-++|+|+.|...|+++..
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~   62 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKF   62 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGG
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcc
Confidence            36789999999999999999999999999999999999999885

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.88  E-value=1.4e-05  Score=65.56  Aligned_cols=52  Identities=10%  Similarity=0.075  Sum_probs=48.4

Q ss_pred             CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ..|++++|.+++..+++++++.++++.|.+++.+..+|+|+.|...|+++..
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~   55 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKS   55 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHH
Confidence            3579999889999999999999999999999999999999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.80  E-value=2.4e-06  Score=70.07  Aligned_cols=49  Identities=6%  Similarity=-0.025  Sum_probs=42.6

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCC-----ceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGH-----SHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~-----~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ...+|.++++.+++++++.++++.|++.+     .+-.+|+|+.|...|.++..
T Consensus         3 aG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~   56 (127)
T d2ouxa2           3 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLR   56 (127)
T ss_dssp             HHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHH
T ss_pred             hhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEee
Confidence            34577889999999999999999998874     67889999999999998864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.1e-05  Score=66.49  Aligned_cols=45  Identities=9%  Similarity=0.149  Sum_probs=41.5

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +..++.+|.+++|+.++++.|++++...++|+|+.|...|+++..
T Consensus        15 ~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~   59 (140)
T d2nyca1          15 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY   59 (140)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             cCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhh
Confidence            457889999999999999999999999999999999999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.73  E-value=1e-05  Score=65.27  Aligned_cols=48  Identities=21%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++|.++++.|++++++.++++.|++++.+.++|+|+ |...|+++..
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-~~~~Gvit~~   49 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE-GVRVGIVTTW   49 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET-TEEEEEEEHH
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC-CcEEEEEEee
Confidence            57788889999999999999999999999999988876 9999999884

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.61  E-value=5.9e-06  Score=67.63  Aligned_cols=47  Identities=15%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP  304 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~  304 (397)
                      .++++|.++++.+++++++.++++.|++++.+..+|+|+  ...|+++.
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~   48 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTT   48 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEH
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeec
Confidence            478888899999999999999999999999999999987  46677655

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.54  E-value=4.6e-05  Score=61.84  Aligned_cols=48  Identities=6%  Similarity=0.117  Sum_probs=40.9

Q ss_pred             cccccc---cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          257 VKNVSI---RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~---r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      ++++|.   ++++.++++.++.++++.|++++.+-++|+| .|...|+++..
T Consensus         4 V~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~   54 (127)
T d2rc3a1           4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTER   54 (127)
T ss_dssp             HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred             HHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEcc
Confidence            455532   5789999999999999999999999999988 58999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=97.54  E-value=8.6e-06  Score=67.34  Aligned_cols=50  Identities=12%  Similarity=-0.002  Sum_probs=46.7

Q ss_pred             CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949          256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~  305 (397)
                      +++++|.++++.++++.++.++++.|++++.+-.+|+|+.|...|+++..
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~   52 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQR   52 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHH
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHH
Confidence            47888889999999999999999999999999999999999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.28  E-value=4.6e-06  Score=67.60  Aligned_cols=44  Identities=7%  Similarity=-0.130  Sum_probs=17.4

Q ss_pred             cccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCccccccc
Q 015949          261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVP  304 (397)
Q Consensus       261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~  304 (397)
                      |+++|.++++++++.++++.|++++..-.+|+|+   .|...|+++.
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~   48 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISS   48 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeee
Confidence            4788899999999999999999999988999986   5678899987

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.00025  Score=59.03  Aligned_cols=50  Identities=2%  Similarity=-0.073  Sum_probs=41.8

Q ss_pred             Cccccc--ccCCcEecCCCCHHHHHHHHHhCCceEEEEEec-CCCcccccccc
Q 015949          256 PVKNVS--IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH-QNDREQPHVPI  305 (397)
Q Consensus       256 ~v~~i~--~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE-yG~~~g~~~~~  305 (397)
                      .+.|+|  ..+++++++++|+.++++.|++++..-++|+|+ .|...|.++..
T Consensus        14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~   66 (159)
T d2v8qe2          14 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT   66 (159)
T ss_dssp             BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHH
T ss_pred             EEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHH
Confidence            456664  246789999999999999999999999999974 68789998773

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.016  Score=48.29  Aligned_cols=40  Identities=13%  Similarity=-0.013  Sum_probs=33.7

Q ss_pred             cEecCCCCHHHHHHHHHhCCceEEEEE--ecCCCcccccccc
Q 015949          266 PRVSETMPLYDILNEFQKGHSHMAVVV--RHQNDREQPHVPI  305 (397)
Q Consensus       266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVV--DEyG~~~g~~~~~  305 (397)
                      ..+++++++.++++.|++.+.+-.+|+  |+.|...|+++..
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~   61 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR   61 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHH
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhH
Confidence            346789999999999999999888888  5667789998863

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.99  E-value=0.064  Score=44.49  Aligned_cols=49  Identities=12%  Similarity=-0.090  Sum_probs=42.4

Q ss_pred             cccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEe-cCCCcccccccc
Q 015949          257 VKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVR-HQNDREQPHVPI  305 (397)
Q Consensus       257 v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD-EyG~~~g~~~~~  305 (397)
                      +.++|.  .++..+++++|+.++++.|.+++.+-++|+| +.|...|+++..
T Consensus        22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~   73 (179)
T d2ooxe1          22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMA   73 (179)
T ss_dssp             HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHH
T ss_pred             eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeec
Confidence            556643  5789999999999999999999999999999 568899999874