Citrus Sinensis ID: 015952
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.969 | 0.918 | 0.575 | 1e-123 | |
| 225470035 | 384 | PREDICTED: uncharacterized protein LOC10 | 0.874 | 0.903 | 0.621 | 1e-122 | |
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.889 | 0.613 | 0.619 | 1e-119 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.834 | 0.578 | 1e-116 | |
| 356567802 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.886 | 0.820 | 0.536 | 1e-104 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.813 | 0.663 | 0.577 | 1e-100 | |
| 388500938 | 474 | unknown [Medicago truncatula] | 0.866 | 0.725 | 0.552 | 1e-100 | |
| 357505165 | 475 | hypothetical protein MTR_7g055720 [Medic | 0.866 | 0.724 | 0.552 | 1e-100 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.795 | 0.659 | 0.517 | 3e-83 | |
| 42566738 | 481 | P-loop containing nucleoside triphosphat | 0.795 | 0.656 | 0.494 | 2e-78 |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/396 (57%), Positives = 288/396 (72%), Gaps = 11/396 (2%)
Query: 9 RFFTPEGEEIISPV-DDFDIPLLSGDDEGSR----DSWDSLVDQRRRDAVFREVLQSYDQ 63
+ + P G+ + V +++ + ++ G R S + +QR++ F+E+LQSYDQ
Sbjct: 28 QLYHPSGKHDVERVNEEYGLAFGEFEEVGCRVLSPTSLEVEANQRKKWKAFKELLQSYDQ 87
Query: 64 LRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123
LR+R SL +AK+KILSYTPG W E VGGM LSDY+VPKTT+LLL+GP+GSGKSSLVNRI
Sbjct: 88 LRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRI 147
Query: 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI 183
SKVF++DKFA ERAQV+YN S G+GTYFLQEY IP S SF LYDTR D++ DNI M+
Sbjct: 148 SKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSFCLYDTRGFFDNSYDNIEML 207
Query: 184 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243
K W+ GV HGEL +R+ D SSLR RM+CK G + R VNFVIFVV+GLAVLKSM
Sbjct: 208 KYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKNRTVNFVIFVVNGLAVLKSM 267
Query: 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP 303
+ + QY ++A+ FNCPY SF+DDKPVVVVTHGDLLSL+DR RIR +LGELLGIPP
Sbjct: 268 GSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPP 327
Query: 304 AKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSCARNKGFRV--SVMAFLNLLLV 361
AKQIFDIPES DP EL I+DMLRY LEHAD NL + A K RV S+ A ++L ++
Sbjct: 328 AKQIFDIPESCDPVTELTIIDMLRYSLEHADNNLPQDTVAE-KVHRVIGSLYACVHLFIM 386
Query: 362 LGIAIIAFKMQHLNAHCIPKSNSNVDWRAIRHLWLD 397
LGIAI++ +Q + H P+ + +V W +IRHLWL+
Sbjct: 387 LGIAILSINIQQM--HREPEQD-HVAWSSIRHLWLE 419
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera] gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/359 (62%), Positives = 271/359 (75%), Gaps = 12/359 (3%)
Query: 47 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106
QRRR V+ ++LQSYD +R R +L AK++ILSYTPGAWIE GGM SDY+VP+TTSL
Sbjct: 28 QRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSL 87
Query: 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166
+L+GPKGSGKSSL+N+IS+VFE+DKFA ERAQV+YN SVGDGTYFLQEY IPRGS SF L
Sbjct: 88 ILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCL 147
Query: 167 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226
YDTR LSD +SDN+ M+K WI +GVRHGEL IR SDS S+R RM+CKA + G S R
Sbjct: 148 YDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRL 207
Query: 227 VNFVIFVVDGLAVLKSMEGDSDVEKQ-YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSL 285
VNFVIFVV+GL+VLKS++ D Q Y Q +A F CPYLSFRDD PVVVVTHGDLLSL
Sbjct: 208 VNFVIFVVNGLSVLKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSL 267
Query: 286 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSCARN 345
+DRAR+R +LGE LGI P KQIFDIPES EL I+DMLRY LEHADRNL CK +
Sbjct: 268 SDRARVRVHLGEHLGISPGKQIFDIPESCGKATELTIIDMLRYSLEHADRNLPCKGWFLD 327
Query: 346 KGFRVSVMAFLNLLLVLGIAIIA---FKMQHLNAHCIPKSNS------NVDWRAIRHLW 395
KG V +MA + LL++L +++ + +++ AH PK ++ ++DW AIRHLW
Sbjct: 328 KGRVVPLMACIFLLIILWLSVASTHIYRVHMRRAH--PKVHTDFPPEFHIDWHAIRHLW 384
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/365 (61%), Positives = 271/365 (74%), Gaps = 12/365 (3%)
Query: 35 EGSRDSWDSL---VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVG 91
EGSR L +Q++ +REVLQSYDQL+ R SL + K+KILSYTPG W+ENV
Sbjct: 84 EGSRIPSSFLELQANQKKASTAYREVLQSYDQLKDRSKSLEEGKSKILSYTPGGWMENVI 143
Query: 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151
GM LSD+DVP TT LL+IGPKGSGKSSL+NRISKVFE+DKFASERAQV+YNSS DGTYF
Sbjct: 144 GMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDDKFASERAQVSYNSSAADGTYF 203
Query: 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 211
LQEY IPR S+SF LYDTR LS D+ D+ NM+K WI +GV H EL+IR SD+S LRN+M+
Sbjct: 204 LQEYMIPRSSSSFCLYDTRGLSYDSYDSANMLKNWITKGVHHRELIIRPSDNSHLRNQMK 263
Query: 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271
CKA GC+ R V FVIFVVDGLAVLKSM+ D K+Y Q++A TF+CPY+SF DD
Sbjct: 264 CKARGNGCQSKETRMVTFVIFVVDGLAVLKSMDNLVDEGKKYTQMIAKTFDCPYISFNDD 323
Query: 272 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 331
KPVVVVTHGDLLSL DRAR+R +LGELLGIPPAKQIFDIPES DP EL IV+ML Y LE
Sbjct: 324 KPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAKQIFDIPESHDPVTELTIVNMLHYSLE 383
Query: 332 HADRNLSCKSCARNKGFRVSVMAFLNLLLVLGIAIIAFKMQHL--------NAHC-IPKS 382
HAD+NL K K +S+ +++L +L IAII+ + L AH +P+S
Sbjct: 384 HADKNLPHKRQIAKKVRSLSLSLYISLFFILAIAIISIYIPPLLIQNPPIPKAHADLPQS 443
Query: 383 NSNVD 387
++ VD
Sbjct: 444 DALVD 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/370 (57%), Positives = 264/370 (71%), Gaps = 6/370 (1%)
Query: 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGG 92
+ E S + D + + RR+ V RE+++SYDQLR R +L AK KILSY+PGAWIE VGG
Sbjct: 67 ESEYSSAALDVDICRMRRNRVHREIIESYDQLRIRSENLNQAKQKILSYSPGAWIEQVGG 126
Query: 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152
M LSDYD+P+TTSL+LIGPKGSGKSSL+NRISKVFE D FA ERAQV+ NSS DGT+FL
Sbjct: 127 MKLSDYDIPQTTSLILIGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFL 186
Query: 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212
EY I R S SF LYDTR LS+D SDNI M+K W+ +GV HG+LV R+SD+SSL NRMRC
Sbjct: 187 HEYMILRKSKSFCLYDTRGLSNDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRC 246
Query: 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272
KA + V+R +NFVIFVVDGL+VLKS++GD D +K Y++++ T FNCPYLS+ DDK
Sbjct: 247 KARQSFPRSRVVRIINFVIFVVDGLSVLKSIDGD-DKQKDYDRVITTAFNCPYLSYGDDK 305
Query: 273 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 332
PVVV+THGDLLS + R+R +LG LLGIP KQIFDIP+ DP EL I+DML YCLEH
Sbjct: 306 PVVVLTHGDLLSFAENVRVRGHLGNLLGIPSTKQIFDIPDRYDPVTELTIIDMLHYCLEH 365
Query: 333 ADRNLSCKSCARNKGFRVSVMAFLNLLLVLGIAIIAFKMQHLNAHCI-----PKSNSNVD 387
AD+NL K K A + + +L I I+ + + HC PK+ +
Sbjct: 366 ADKNLPPKRWTVIKDMFSVSAADIYFVAILMIVFISASLYQVYVHCCLEQQKPKNAVEIV 425
Query: 388 WRAIRHLWLD 397
W IRHLWLD
Sbjct: 426 WPEIRHLWLD 435
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/365 (53%), Positives = 254/365 (69%), Gaps = 13/365 (3%)
Query: 42 DSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101
D V++RRR ++E+LQ D+L+ L K KIL Y PGAWIE GG+ +SDYDVP
Sbjct: 67 DFEVNERRRVINYQEILQCCDELKIHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVP 126
Query: 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGS 161
KTT LLL+GP+GSGKSSL+NRISKV E+D+FA RAQ +YNS +GDGT FLQEY IPR S
Sbjct: 127 KTTCLLLVGPRGSGKSSLINRISKVVEDDRFAPARAQESYNSLLGDGTSFLQEYMIPRYS 186
Query: 162 NSFSLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 219
NS LYDTRSLSD++ +NI M+K W+ +GV HGELV+R++D+ LR ++ KAHK G
Sbjct: 187 NSICLYDTRSLSDNSEKDENIRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGY 246
Query: 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279
S RKVNFVI+VV+GL VLK+ME D +E Q Q + +TFNCP+LSF+DDKPV+V TH
Sbjct: 247 LSSKTRKVNFVIYVVNGLLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTH 306
Query: 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSC 339
GDLLS ++RA +R +LG LLGIPP KQIFDIP+ P E I+ MLRY L HADR+
Sbjct: 307 GDLLSFSERALVREHLGTLLGIPPTKQIFDIPDCDCPATESAIIGMLRYSLAHADRHFPQ 366
Query: 340 KSCARNKGFRVSVMAFLNLLLVLGIAIIAFKMQHLN---------AHCIPKSNSNVDWRA 390
+S +K ++S+ ++ +LL+LGI I Q+ +PKS ++W
Sbjct: 367 RSKVMDKVHKMSLSLYM-ILLILGIGIAIGWAQNTENRRVQFPRPKQKVPKSKP-IEWHK 424
Query: 391 IRHLW 395
IRH+W
Sbjct: 425 IRHIW 429
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/327 (57%), Positives = 243/327 (74%), Gaps = 4/327 (1%)
Query: 44 LVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103
+V +R+R ++++E+LQSYD+L+ SL AK KIL Y PG WIE G+ L DYDVP+T
Sbjct: 65 VVGERKRLSIYQEILQSYDELKIDSISLKQAKEKILRYRPGTWIEKARGLKLRDYDVPET 124
Query: 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 163
TSL+L+GP GSGKSSL+NRISKVF++DKFA RAQV+YNS GDGTYFL+E+ IPR SNS
Sbjct: 125 TSLILVGPSGSGKSSLINRISKVFDDDKFAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS 184
Query: 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223
LYDTRSLS+ + +N M+K W+ EGV HGELVIR D+ +L ++CK +K G S
Sbjct: 185 ICLYDTRSLSNKSHENNEMLKNWMTEGVHHGELVIRSKDNQTLTESLKCKGNKKGFFSSK 244
Query: 224 IRKVNFVIFVVDGLAVLKSME-GDSDVEKQY-NQIVAT-TFNCPYLSFRDDKPVVVVTHG 280
RKVNFVI+V++GL+VL ME D + +Y +IV+T FN P+LSF+DDKPV+V+THG
Sbjct: 245 SRKVNFVIYVLNGLSVLNMMENADGAFKARYIEEIVSTFNFNNPFLSFKDDKPVLVLTHG 304
Query: 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 340
DLLSL+DRAR+R YLGE+LGIPP KQIFDIPE D E I+ MLRY LEHAD N+ K
Sbjct: 305 DLLSLSDRARVRVYLGEVLGIPPTKQIFDIPECDDLVTESAIIGMLRYTLEHADNNIPQK 364
Query: 341 SCARNKGFRVSVMAFLNL-LLVLGIAI 366
+ NK ++S+ F+ L +L +G AI
Sbjct: 365 TNVMNKVHKISLSLFMILMMLAIGFAI 391
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 244/346 (70%), Gaps = 2/346 (0%)
Query: 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYT 82
++ D +S + + + DS++ +R+R +++E+LQSYD L+ +L +AK KILSY
Sbjct: 50 NELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYR 109
Query: 83 PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142
PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YN
Sbjct: 110 PGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYN 169
Query: 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202
S G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+ +GVRHGELV R D
Sbjct: 170 SIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMD 229
Query: 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTF 261
L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y Q + +TF
Sbjct: 230 DKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTF 289
Query: 262 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321
NCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E
Sbjct: 290 NCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESA 349
Query: 322 IVDMLRYCLEHADRNLSCKSCARNKGFRVSVMAFLNLL-LVLGIAI 366
IV MLRY LEHAD N KS NK ++S+ F+ LL L +G AI
Sbjct: 350 IVGMLRYTLEHADGNFPQKSNVMNKIHKISLSLFMILLILAIGFAI 395
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula] gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 244/346 (70%), Gaps = 2/346 (0%)
Query: 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYT 82
++ D +S + + + DS++ +R+R +++E+LQSYD L+ +L +AK KILSY
Sbjct: 50 NELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYR 109
Query: 83 PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142
PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YN
Sbjct: 110 PGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYN 169
Query: 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202
S G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+ +GVRHGELV R D
Sbjct: 170 SIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMD 229
Query: 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTF 261
L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y Q + +TF
Sbjct: 230 DKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTF 289
Query: 262 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321
NCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E
Sbjct: 290 NCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESA 349
Query: 322 IVDMLRYCLEHADRNLSCKSCARNKGFRVSVMAFLNLL-LVLGIAI 366
IV MLRY LEHAD N KS NK ++S+ F+ LL L +G AI
Sbjct: 350 IVGMLRYTLEHADGNFPQKSNVMNKIHKISLSLFMILLILAIGFAI 395
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/334 (51%), Positives = 231/334 (69%), Gaps = 18/334 (5%)
Query: 42 DSLVDQRRRDAVFREVLQSYD-QLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100
+ + D RRR+ ++E+LQSYD LR+ L A+N+IL YTPG+W + + LSDYDV
Sbjct: 47 NHVTDLRRREKSYQEILQSYDVLLRSSKRKLRQARNEILRYTPGSWSD----VKLSDYDV 102
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
PKTTS++L+GPKG+GKSSLVN+IS+V E+D+F RAQ ++ + GT+F+QEY IPRG
Sbjct: 103 PKTTSIMLVGPKGAGKSSLVNKISRVIEDDEFFPARAQESFGTQSKGGTFFVQEYMIPRG 162
Query: 161 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218
S SF LYDTR LS +SDN MI+ W+ +GV HGE VI SDSS L++R+ + G
Sbjct: 163 GSASFCLYDTRGLSHISSSDNTRMIEQWMTKGVHHGEPVIWTSDSSDLKDRL-IRDGGTG 221
Query: 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278
E RKVN VIFV++ + +LKSME E Y +++T FNCP LSF+DDKP VV+T
Sbjct: 222 YER---RKVNSVIFVINAVEILKSME----CETSYAHMISTAFNCPLLSFKDDKPAVVMT 274
Query: 279 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN-- 336
HGD+LSL DRAR+R +LGELLGIPPAKQIFDIPES D L I ++L Y L+HAD+N
Sbjct: 275 HGDMLSLEDRARVRVFLGELLGIPPAKQIFDIPESRDIATALTICNLLCYSLDHADKNFV 334
Query: 337 -LSCKSCARNKGFRVSVMAFLNLLLVLGIAIIAF 369
L ++ +K + ++ LL ++ IA+I F
Sbjct: 335 FLPKRNFTISKVGGGGLTKWIILLDIISIALILF 368
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566738|ref|NP_193039.3| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657819|gb|AEE83219.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 227/334 (67%), Gaps = 18/334 (5%)
Query: 42 DSLVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100
+ + D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++
Sbjct: 48 NHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNI 103
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
PKTTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG
Sbjct: 104 PKTTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRG 163
Query: 161 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218
S SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G
Sbjct: 164 GSASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTG 222
Query: 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278
E RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+T
Sbjct: 223 YER---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMT 275
Query: 279 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN-- 336
HGD+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 276 HGDMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNFV 335
Query: 337 -LSCKSCARNKGFRVSVMAFLNLLLVLGIAIIAF 369
L K+ +K + +++LL ++ IA++ F
Sbjct: 336 FLPKKNFTISKVGGGGLTKWISLLDIISIALVLF 369
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.790 | 0.652 | 0.496 | 7.5e-78 | |
| ZFIN|ZDB-GENE-030131-9145 | 313 | si:dkey-79f11.5 "si:dkey-79f11 | 0.347 | 0.440 | 0.308 | 1.9e-05 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 165/332 (49%), Positives = 226/332 (68%)
Query: 44 LVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 102
+ D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++PK
Sbjct: 50 VTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNIPK 105
Query: 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG-S 161
TTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG S
Sbjct: 106 TTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGS 165
Query: 162 NSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220
SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G E
Sbjct: 166 ASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTGYE 224
Query: 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280
RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+THG
Sbjct: 225 R---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMTHG 277
Query: 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN---L 337
D+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N L
Sbjct: 278 DMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNFVFL 337
Query: 338 SCKSCARNKGFRVSVMAFLNLLLVLGIAIIAF 369
K+ +K + +++LL ++ IA++ F
Sbjct: 338 PKKNFTISKVGGGGLTKWISLLDIISIALVLF 369
|
|
| ZFIN|ZDB-GENE-030131-9145 si:dkey-79f11.5 "si:dkey-79f11.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 50/162 (30%), Positives = 82/162 (50%)
Query: 86 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145
W+EN TLSD +V K +L++GP G+GKSS +N I+ VF+ + S +A V NS+
Sbjct: 57 WLEN---FTLSDPNV-KDIKILVVGPSGAGKSSFINSINSVFQ--RRISSKALV--NSAG 108
Query: 146 GDGTYF---LQEYTIPRGSNS--FSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELV 197
GD F L+ TI G S F +D L + S ++IK + V+ G
Sbjct: 109 GDNHSFTEKLKRLTIKNGKTSLPFVFFDIMGLEAEEFHGSKTEDIIKA-VFGHVKDG--- 164
Query: 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 239
+ ++ S+ + + H +PS+ + V++++DG V
Sbjct: 165 YKFNEEQSIDYKDQ---HYTS-DPSLSDQCFCVVYIIDGKIV 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 397 397 0.00097 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 618 (66 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.31u 0.11s 34.42t Elapsed: 00:00:01
Total cpu time: 34.31u 0.11s 34.42t Elapsed: 00:00:01
Start: Tue May 21 02:59:18 2013 End: Tue May 21 02:59:19 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 397 | |||
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.004 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 SLLLIGPKGSGKSSLVNRISKVFENDKF 132
+LL+GP G+GKS L R++ N
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPV 28
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.94 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.93 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.92 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.92 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.92 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.91 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.87 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.87 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.82 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.8 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.78 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.78 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.75 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.74 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.71 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.71 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.7 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.69 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.66 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.65 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.64 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.59 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.58 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.57 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.56 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.56 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.52 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.52 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.52 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.36 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.31 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.31 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.3 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.27 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.26 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.21 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.19 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.16 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.12 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.1 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.08 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.07 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.04 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.01 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.99 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.98 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.88 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.88 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.85 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.82 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.81 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.8 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.79 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.77 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.77 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.71 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.68 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.68 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.66 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.64 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.62 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.62 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.59 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.55 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.54 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.54 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.52 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.51 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.5 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.48 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.46 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.4 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.4 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.4 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.4 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.39 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.37 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.36 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.31 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.3 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.29 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.28 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.27 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.26 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.25 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.22 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.21 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.21 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.21 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.18 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.15 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.14 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.14 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.14 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.13 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.11 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.11 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.1 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.08 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.06 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.04 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.01 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.97 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.97 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.93 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.92 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 97.91 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.91 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 97.9 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.88 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.86 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.86 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=430.23 Aligned_cols=211 Identities=18% Similarity=0.266 Sum_probs=188.9
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
++|+++||+|+|+.. .+ |+||||+|++||+++|+||||||||||||||+||.+ |++|+|.++|.
T Consensus 1 ~mi~i~~l~K~fg~~-~V-----Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~ 69 (240)
T COG1126 1 MMIEIKNLSKSFGDK-EV-----LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDK 69 (240)
T ss_pred CeEEEEeeeEEeCCe-EE-----ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccch
Confidence 479999999999643 25 999999999999999999999999999999999999 99999999995
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRva 212 (397)
|+++|+|||+++||+ |+||.||+.++.. +++++++++.++|++||| +..+.||.+||||||||||
T Consensus 70 ~~~~~~R~~vGmVFQ~fnLFP---HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA 146 (240)
T COG1126 70 KDILKLRRKVGMVFQQFNLFP---HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA 146 (240)
T ss_pred hhHHHHHHhcCeecccccccc---cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH
Confidence 568999999999998 9999999998754 678889999999999999 5668899999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|+++ ++|||| |+||+++-. +.++.+.++ +++|+|+|+|||+ ++.+.||||
T Consensus 147 IARALaM~P~vm--------LFDEPT--SALDPElv~--EVL~vm~~L-------A~eGmTMivVTHEM~FAr~Vadrv- 206 (240)
T COG1126 147 IARALAMDPKVM--------LFDEPT--SALDPELVG--EVLDVMKDL-------AEEGMTMIIVTHEMGFAREVADRV- 206 (240)
T ss_pred HHHHHcCCCCEE--------eecCCc--ccCCHHHHH--HHHHHHHHH-------HHcCCeEEEEechhHHHHHhhheE-
Confidence 999999999999 556667 888877654 456666655 3689999999995 999999999
Q ss_pred EEeeCCEEeeeCCcccccCCCCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
++|++|++++.|+|+++|.+|.++
T Consensus 207 iFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 207 IFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred EEeeCCEEEEecCHHHHhcCCCCH
Confidence 689999999999999999999754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-55 Score=432.17 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=188.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
++.++++||+|+|+ +. .+ |+|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+
T Consensus 3 ~~~l~i~~v~k~yg-~~--~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~~ 71 (352)
T COG3842 3 KPALEIRNVSKSFG-DF--TA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDITD 71 (352)
T ss_pred CceEEEEeeeeecC-Ce--eE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 46899999999996 33 33 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIA 214 (397)
++.||+|||+|.||+ ||||.||++|+++ ..+++++++.++++.++| +...++|.+||||||||||||
T Consensus 72 lpp~kR~ig~VFQ~YALFP---HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 72 VPPEKRPIGMVFQSYALFP---HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA 148 (352)
T ss_pred CChhhcccceeecCcccCC---CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHH
Confidence 589999999999998 9999999999987 335678899999999999 556788999999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++|||||| +|+||..+++ +...+++++. .+.|.|.|+|||| ++..++|||+ +
T Consensus 149 RAL~~~P~vLLLDEP----------lSaLD~kLR~--~mr~Elk~lq------~~~giT~i~VTHDqeEAl~msDrI~-V 209 (352)
T COG3842 149 RALVPEPKVLLLDEP----------LSALDAKLRE--QMRKELKELQ------RELGITFVYVTHDQEEALAMSDRIA-V 209 (352)
T ss_pred HHhhcCcchhhhcCc----------ccchhHHHHH--HHHHHHHHHH------HhcCCeEEEEECCHHHHhhhccceE-E
Confidence 999999999977766 5888876665 3455555542 4569999999995 9999999995 6
Q ss_pred eeCCEEeeeCCcccccCCCCC
Q 015952 293 TYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~~~ 313 (397)
|++|+|.+.|+|+++|..|.+
T Consensus 210 m~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 210 MNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred ccCCceeecCCHHHHhhCcch
Confidence 999999999999999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=416.05 Aligned_cols=223 Identities=14% Similarity=0.196 Sum_probs=189.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||++++|+|.|..+.. ..+.||+||||+|++||++||||.||||||||+|||++|.+ |++|+|.++|.
T Consensus 1 mI~l~~vsK~~~~~~~-~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~l~ 74 (339)
T COG1135 1 MIELENVSKTFGQTGT-GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTALS 74 (339)
T ss_pred CeEEEeeeeeeccCCC-CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEecccCC
Confidence 6899999999965211 22334999999999999999999999999999999999999 99999999996
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRva 212 (397)
|++|||+||+++|.+ ..||++|++|++. +++++++++.++++.||| +....||.+|||||||||+
T Consensus 75 ~~~Lr~~R~~IGMIFQhFnLLs---srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa 151 (339)
T COG1135 75 EAELRQLRQKIGMIFQHFNLLS---SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA 151 (339)
T ss_pred hHHHHHHHhhccEEeccccccc---cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH
Confidence 579999999999998 6899999999977 678899999999999999 5568899999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~ 290 (397)
|||||+.+|++| ++|||| |+||+.+.. ..++.+.++ ..+.|.||++||| +.+.++|||++
T Consensus 152 IARALa~~P~iL--------L~DEaT--SALDP~TT~--sIL~LL~~I------n~~lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 152 IARALANNPKIL--------LCDEAT--SALDPETTQ--SILELLKDI------NRELGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred HHHHHhcCCCEE--------EecCcc--ccCChHHHH--HHHHHHHHH------HHHcCCEEEEEechHHHHHHHhhhhe
Confidence 999999999999 555556 666665544 344444443 2457999999999 59999999996
Q ss_pred EEeeCCEEeeeCCcccccCCCCCCChhhHHHHH
Q 015952 291 IRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i~ 323 (397)
+|++|++++.|+..++|.+|.++ .+..++.
T Consensus 214 -vm~~G~lvE~G~v~~vF~~Pk~~--~t~~fi~ 243 (339)
T COG1135 214 -VLDQGRLVEEGTVSEVFANPKHA--ITQEFIG 243 (339)
T ss_pred -EeeCCEEEEeccHHHhhcCcchH--HHHHHHH
Confidence 59999999999999999999753 3444444
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=419.44 Aligned_cols=212 Identities=16% Similarity=0.200 Sum_probs=187.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|++.. + |+++||+|++||+++|+||||||||||||+|+||.+ |++|+|.++|+
T Consensus 1 M~~i~l~~v~K~yg~~~-~-----l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt~ 69 (338)
T COG3839 1 MAELELKNVRKSFGSFE-V-----LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVTD 69 (338)
T ss_pred CcEEEEeeeEEEcCCce-e-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 56899999999996432 4 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIAr 215 (397)
+++|+||||+|.|++ +|||+||++|+++ ++++.++++.++.+.+++ +.+.++|.+|||||||||||||
T Consensus 70 l~P~~R~iamVFQ~yALyP---hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 70 LPPEKRGIAMVFQNYALYP---HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred CChhHCCEEEEeCCccccC---CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHH
Confidence 489999999999998 8999999999987 468889999999999999 5568889999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+++|+++||||| +|+||..+.. ..+..+.++ +.+-|.|+|+|||| ++..+||||+ +|
T Consensus 147 AlVr~P~v~L~DEP----------lSnLDa~lR~--~mr~ei~~l------h~~l~~T~IYVTHDq~EAmtladri~-Vm 207 (338)
T COG3839 147 ALVRKPKVFLLDEP----------LSNLDAKLRV--LMRSEIKKL------HERLGTTTIYVTHDQVEAMTLADRIV-VM 207 (338)
T ss_pred HHhcCCCEEEecCc----------hhHhhHHHHH--HHHHHHHHH------HHhcCCcEEEEcCCHHHHHhhCCEEE-EE
Confidence 99999999977777 4777766555 344555443 23468999999996 9999999995 69
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|+|.+.|+|.++|.+|.+
T Consensus 208 ~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 208 NDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred eCCeeeecCChHHHhhCccc
Confidence 99999999999999999875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=400.16 Aligned_cols=210 Identities=16% Similarity=0.212 Sum_probs=184.9
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+++||+|+|+ +..+ ++|+||+|++||+++++|||||||||+||+|++|++ |++|+|.++|+
T Consensus 1 MI~~~nvsk~y~-~~~a-----v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~~d 69 (309)
T COG1125 1 MIEFENVSKRYG-NKKA-----VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISDLD 69 (309)
T ss_pred CceeeeeehhcC-Ccee-----eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecccCC
Confidence 689999999996 3324 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc---ccccCCCCCChHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG---ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~---~~~~~~~~lSGGqkQRvaI 213 (397)
|++||||-|...||+ |+||.||+++-.. .++.++++++++++.+||+ ...++|.+|||||||||.+
T Consensus 70 ~~~LRr~IGYviQqigLFP---h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv 146 (309)
T COG1125 70 PVELRRKIGYVIQQIGLFP---HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGV 146 (309)
T ss_pred HHHHHHhhhhhhhhcccCC---CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHH
Confidence 689999999999998 9999999988644 6778889999999999994 3578899999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++|||||| |++||+.++. +..+.+.++ +++-|+|||+|||| ++.++||||+
T Consensus 147 ~RALAadP~ilLMDEP----------FgALDpI~R~--~lQ~e~~~l------q~~l~kTivfVTHDidEA~kLadri~- 207 (309)
T COG1125 147 ARALAADPPILLMDEP----------FGALDPITRK--QLQEEIKEL------QKELGKTIVFVTHDIDEALKLADRIA- 207 (309)
T ss_pred HHHHhcCCCeEeecCC----------ccccChhhHH--HHHHHHHHH------HHHhCCEEEEEecCHHHHHhhhceEE-
Confidence 9999999999988888 5667766665 333444433 24569999999994 9999999995
Q ss_pred EeeCCEEeeeCCcccccCCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|++|++++.++|++++.+|++
T Consensus 208 vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 208 VMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred EecCCeEEEeCCHHHHHhCccH
Confidence 6999999999999999999874
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=395.65 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=167.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.++++++++++|+. . .+ |+|+||+|++||+++||||||||||||+|+|+||.+ |++|+|.++|.
T Consensus 2 ~~l~i~~v~~~f~~-~--~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~~p 70 (248)
T COG1116 2 ALLEIEGVSKSFGG-V--EV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVTGP 70 (248)
T ss_pred ceEEEEeeEEEeCc-e--EE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccCCC
Confidence 57899999999964 3 33 999999999999999999999999999999999999 99999999997
Q ss_pred eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcC
Q 015952 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 145 ~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
..++|||||++.|++ ++||+||+.++.. .+++.++++.++++.||| +...++|.+|||||||||||||||+.
T Consensus 71 ~~~~~~vFQ~~~LlP---W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 71 GPDIGYVFQEDALLP---WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred CCCEEEEeccCcccc---hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 368999999999987 7999999999876 355667789999999999 66789999999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
+|++|||||| |+.||+-| .. ...+.+.++. .+.++||++|||| ++..++||| ++|.++
T Consensus 148 ~P~lLLlDEP-FgALDalT---------R~--~lq~~l~~lw------~~~~~TvllVTHdi~EAv~LsdRi-vvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEP-FGALDALT---------RE--ELQDELLRLW------EETRKTVLLVTHDVDEAVYLADRV-VVLSNR 207 (248)
T ss_pred CCCEEEEcCC-cchhhHHH---------HH--HHHHHHHHHH------HhhCCEEEEEeCCHHHHHhhhCEE-EEecCC
Confidence 9999999999 55555555 33 2334444432 3578999999995 999999999 569984
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=384.07 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=165.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+++++||+|.|+.+.. .+.+|+++||+|++||+++|+||||||||||||+|+|+.+ |++|.|.++|.
T Consensus 1 ~i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l~ 73 (226)
T COG1136 1 MIELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKLS 73 (226)
T ss_pred CcEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcCC
Confidence 5789999999975541 1334999999999999999999999999999999999999 99999999996
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccc-cCCCCCChHHHHH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELV-IRRSDSSSLRNRM 210 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~-~~~~~lSGGqkQR 210 (397)
+++||||||+++|.+ .+||.||+.++.. .....++++..+++.+|++ ... ++|.+||||||||
T Consensus 74 ~~~~~~~R~~~iGfvFQ~~nLl~---~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 74 EKELAKLRRKKIGFVFQNFNLLP---DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHHHHHHHHHhEEEECccCCCCC---CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHH
Confidence 368999999999987 7999999997644 2225677888999999995 455 6799999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
|||||||+++|++||+ |||| ++||..+.. ..++.+.++ ..+.|+|||||||| .++.+|||+
T Consensus 151 VAIARAL~~~P~iilA--------DEPT--gnLD~~t~~--~V~~ll~~~------~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 151 VAIARALINNPKIILA--------DEPT--GNLDSKTAK--EVLELLREL------NKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred HHHHHHHhcCCCeEEe--------eCcc--ccCChHHHH--HHHHHHHHH------HHhcCCEEEEEcCCHHHHHhCCEE
Confidence 9999999999999955 5555 666655444 344444443 13469999999997 999999999
Q ss_pred EEEeeCCEEe
Q 015952 290 RIRTYLGELL 299 (397)
Q Consensus 290 ~v~l~~G~iv 299 (397)
+.|++|++.
T Consensus 213 -i~l~dG~~~ 221 (226)
T COG1136 213 -IELKDGKIE 221 (226)
T ss_pred -EEEeCCeee
Confidence 689999943
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=392.51 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=182.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+|.++|+++.|+.- .+ ++||||+|+.||.+||+||||||||||||+|+||.. |++|+|.++|+
T Consensus 2 ~i~i~~~~~~~~~~---~a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGAF---GA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhcccc---cc---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 58899999999532 23 899999999999999999999999999999999999 99999999998
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRva 212 (397)
.++||||||+|.+|+ +|||.|||+|+.. +...++.++.++|+.+.|+. ...||.+||||||||||
T Consensus 71 ~~~~~~R~VGfvFQ~YALF~---HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVA 147 (345)
T COG1118 71 NLAVRDRKVGFVFQHYALFP---HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVA 147 (345)
T ss_pred ccchhhcceeEEEechhhcc---cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHH
Confidence 378999999999998 9999999999985 35677889999999999954 57889999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
+||||+.+|++|||||| |++||..... ...+.+.++. .+-|.|+|+|||| ++.++||||
T Consensus 148 LARALA~eP~vLLLDEP----------f~ALDa~vr~--~lr~wLr~~~------~~~~~ttvfVTHD~eea~~ladrv- 208 (345)
T COG1118 148 LARALAVEPKVLLLDEP----------FGALDAKVRK--ELRRWLRKLH------DRLGVTTVFVTHDQEEALELADRV- 208 (345)
T ss_pred HHHHhhcCCCeEeecCC----------chhhhHHHHH--HHHHHHHHHH------HhhCceEEEEeCCHHHHHhhcceE-
Confidence 99999999999977777 4777754443 2334444331 2358999999996 999999999
Q ss_pred EEeeCCEEeeeCCcccccCCCCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
++|++|+|...|+++++|..|++.
T Consensus 209 vvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 209 VVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred EEecCCeeeeeCCHHHHhcCCCcc
Confidence 679999999999999999999764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=370.16 Aligned_cols=206 Identities=19% Similarity=0.246 Sum_probs=176.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.+|+++||++.|+++... |+||||+|++||+++||||||||||||||+|+|+.+ |++|+|.++|.
T Consensus 2 ~~i~~~nl~k~yp~~~~a-----L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQA-----LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCCcee-----eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 589999999999766644 999999999999999999999999999999999999 99999999996
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------------ChhhHHHHHHHHHHHCCC-cccccCCCCC
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------------ASDNINMIKLWIMEGVRH-GELVIRRSDS 203 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------------~~~~~~~~~~~ll~~vgl-~~~~~~~~~l 203 (397)
+++|||+||+++|.+ .++|++|+..+.. ...+.+..+.++|+++|+ +....+..+|
T Consensus 72 ~~k~lr~~r~~iGmIfQ~~nLv~---r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~L 148 (258)
T COG3638 72 KGKELRKLRRDIGMIFQQFNLVP---RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTL 148 (258)
T ss_pred chHHHHHHHHhceeEeccCCccc---ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccC
Confidence 478999999999987 5899999988754 234556778889999999 5566778999
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hh
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GD 281 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~ 281 (397)
||||||||+|||||+.+|++||+||| + ++||+.+.+ +.++.++++ ..++|.|||+.-| |.
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEP-v---------asLDp~~a~--~Vm~~l~~i------n~~~g~Tvi~nLH~vdl 210 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEP-V---------ASLDPESAK--KVMDILKDI------NQEDGITVIVNLHQVDL 210 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCc-c---------cccChhhHH--HHHHHHHHH------HHHcCCEEEEEechHHH
Confidence 99999999999999999999977777 3 555555444 345555543 2468999999999 69
Q ss_pred HHccccEEEEEeeCCEEeeeCCcccc
Q 015952 282 LLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 282 ~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+.+||||| +-|++|+|+.+|++.++
T Consensus 211 A~~Y~~Ri-igl~~G~ivfDg~~~el 235 (258)
T COG3638 211 AKKYADRI-IGLKAGRIVFDGPASEL 235 (258)
T ss_pred HHHHHhhh-eEecCCcEEEeCChhhh
Confidence 99999999 67999999999999764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=367.29 Aligned_cols=210 Identities=19% Similarity=0.260 Sum_probs=181.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.+.|++++|+++|++. .+ ++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|.++|.
T Consensus 6 ~~~I~vr~v~~~fG~~-~I-----ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGDR-VI-----LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCCE-EE-----ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 5689999999999643 35 999999999999999999999999999999999999 99999999998
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCC-cc-cccCCCCCChHHH
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRH-GE-LVIRRSDSSSLRN 208 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl-~~-~~~~~~~lSGGqk 208 (397)
++++|++||...||. .+||+||++|++. +++..++.+..-|+.||| +. ...+|.+|||||+
T Consensus 75 ls~~~~~~ir~r~GvlFQ~gALFs---sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~ 151 (263)
T COG1127 75 LSEEELYEIRKRMGVLFQQGALFS---SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMR 151 (263)
T ss_pred cCHHHHHHHHhheeEEeecccccc---ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHH
Confidence 468999999999998 7999999999876 567778888889999999 44 6788999999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
+|+|||||++.+|+|| ++|||| ++||+.... .+-+.|.++ +..-|.|+++|||| .+..+|
T Consensus 152 KRvaLARAialdPell--------~~DEPt--sGLDPI~a~--~~~~LI~~L------~~~lg~T~i~VTHDl~s~~~i~ 213 (263)
T COG1127 152 KRVALARAIALDPELL--------FLDEPT--SGLDPISAG--VIDELIREL------NDALGLTVIMVTHDLDSLLTIA 213 (263)
T ss_pred HHHHHHHHHhcCCCEE--------EecCCC--CCCCcchHH--HHHHHHHHH------HHhhCCEEEEEECChHHHHhhh
Confidence 9999999999999999 555556 777776654 222333332 12358999999995 999999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
||++ ++.+|+|+..|+++++...+
T Consensus 214 Drv~-~L~~gkv~~~Gt~~el~~sd 237 (263)
T COG1127 214 DRVA-VLADGKVIAEGTPEELLASD 237 (263)
T ss_pred ceEE-EEeCCEEEEeCCHHHHHhCC
Confidence 9995 69999999999999998643
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-50 Score=366.46 Aligned_cols=222 Identities=21% Similarity=0.266 Sum_probs=182.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.+.++++|+++.|+... + |+|||++|++++++||+||||||||||||+++.+.......-.+|+|.++|+
T Consensus 5 ~~~~~~~~l~~yYg~~~-a-----L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH-A-----LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECchh-h-----hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 46799999999996432 4 9999999999999999999999999999999999882222223599999998
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-c----cccCCCCCChHH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-E----LVIRRSDSSSLR 207 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~----~~~~~~~lSGGq 207 (397)
|++||+|||.|+-|+ +|++||++++.+ ..++.++.+++.|+...|. + +++.+..|||||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp----~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQ 154 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFP----MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQ 154 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCC----chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhH
Confidence 578999999999886 899999999976 2356778899999999993 2 356678899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
|||+||||||+.+|++||| |||| |+||+.... .+.+++ ...++.-|||+|||+ .+++.
T Consensus 155 QQRLcIARalAv~PeVlLm--------DEPt--SALDPIsT~------kIEeLi----~eLk~~yTIviVTHnmqQAaRv 214 (253)
T COG1117 155 QQRLCIARALAVKPEVLLM--------DEPT--SALDPISTL------KIEELI----TELKKKYTIVIVTHNMQQAARV 214 (253)
T ss_pred HHHHHHHHHHhcCCcEEEe--------cCcc--cccCchhHH------HHHHHH----HHHHhccEEEEEeCCHHHHHHH
Confidence 9999999999999999955 5555 788876644 233332 222577899999994 99999
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHHHH
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i~ 323 (397)
+|+.+ ++..|++++.|+++++|.+|.++ .|+.++.
T Consensus 215 SD~ta-Ff~~G~LvE~g~T~~iF~~P~~~--~TedYis 249 (253)
T COG1117 215 SDYTA-FFYLGELVEFGPTDKIFTNPKHK--RTEDYIS 249 (253)
T ss_pred hHhhh-hhcccEEEEEcCHHhhhcCccHH--HHHHHhc
Confidence 99996 69999999999999999999754 4665554
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=373.33 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=177.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+++++|++++|+ +..+ |+|+||+|++|++++|+||||||||||||+|+|+++ |.+|+|.++|+
T Consensus 2 ~L~~~~ls~~y~-~~~i-----l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~~~ 70 (258)
T COG1120 2 MLEVENLSFGYG-GKPI-----LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIASLS 70 (258)
T ss_pred eeEEEEEEEEEC-CeeE-----EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhhcC
Confidence 689999999997 4446 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--------hhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------SDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMR 211 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRv 211 (397)
.+.+|||||++..+. .+||+|-+.++..+ .++.++.+.++|+.+++.++ .+...+|||||||||
T Consensus 71 ~kelAk~ia~vpQ~~~~~~---~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv 147 (258)
T COG1120 71 PKELAKKLAYVPQSPSAPF---GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV 147 (258)
T ss_pred HHHHhhhEEEeccCCCCCC---CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence 368999999987766 79999999998662 33445578999999999655 555778899999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
.|||||+.+|++| +||||| +.||...+. ..++.++++. .++|+|||+|+|| .+.++||++
T Consensus 148 ~iArALaQ~~~iL--------LLDEPT--s~LDi~~Q~--evl~ll~~l~------~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 148 LIARALAQETPIL--------LLDEPT--SHLDIAHQI--EVLELLRDLN------REKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHHHHHhcCCCEE--------EeCCCc--cccCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHHhCCEE
Confidence 9999999999999 666667 778755543 5566666542 3579999999995 999999999
Q ss_pred EEEeeCCEEeeeCCcccccCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~ 310 (397)
++|++|+++..|+|++++..
T Consensus 210 -i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 210 -ILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred -EEEECCeEEeecCcchhcCH
Confidence 67999999999999988754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=354.69 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=171.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+++||+|.|+.+. ++ |+||||+|++||++-|+||||||||||+|+|.+..+ |++|+|.++|.
T Consensus 1 mI~f~~V~k~Y~~g~--~a---L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 1 MIRFENVSKAYPGGR--EA---LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRLK 70 (223)
T ss_pred CeeehhhhhhcCCCc--hh---hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeeccccc
Confidence 689999999998775 33 999999999999999999999999999999999999 99999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRva 212 (397)
+++||+|||++.|.. +.||+||++|++. ...+.++++.++|+.|||.+ .+.-|.+|||||||||+
T Consensus 71 ~~~iP~LRR~IGvVFQD~rLL~---~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRva 147 (223)
T COG2884 71 GREIPFLRRQIGVVFQDFRLLP---DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA 147 (223)
T ss_pred ccccchhhheeeeEeeeccccc---cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHH
Confidence 589999999999877 6999999999987 56788899999999999944 56679999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
||||++++|++||+||| | ..||+.+.. ..++.+.++ ...|+||||.||| .+.++--|+
T Consensus 148 IARAiV~~P~vLlADEP--------T--GNLDp~~s~--~im~lfeei-------nr~GtTVl~ATHd~~lv~~~~~rv- 207 (223)
T COG2884 148 IARAIVNQPAVLLADEP--------T--GNLDPDLSW--EIMRLFEEI-------NRLGTTVLMATHDLELVNRMRHRV- 207 (223)
T ss_pred HHHHHccCCCeEeecCC--------C--CCCChHHHH--HHHHHHHHH-------hhcCcEEEEEeccHHHHHhccCcE-
Confidence 99999999999955555 5 566655444 344444444 2579999999996 677777888
Q ss_pred EEeeCCEEeeeCC
Q 015952 291 IRTYLGELLGIPP 303 (397)
Q Consensus 291 v~l~~G~iv~~g~ 303 (397)
+.+++|+++.+..
T Consensus 208 l~l~~Grl~~d~~ 220 (223)
T COG2884 208 LALEDGRLVRDES 220 (223)
T ss_pred EEEeCCEEEeccc
Confidence 6799999998754
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=364.35 Aligned_cols=218 Identities=14% Similarity=0.153 Sum_probs=181.0
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
+++++++|+++.|+.+. ..+.+|++|||+|.+||+++|+||||||||||.|+|+|+.+ |++|+|.++|+
T Consensus 1 ~~~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~ 73 (252)
T COG1124 1 MTLLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAP 73 (252)
T ss_pred CceEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCc
Confidence 46899999999997654 23344999999999999999999999999999999999999 99999999995
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCC--cccccCCCCCChHHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRH--GELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGqkQRvaI 213 (397)
.+.+.+|||+|.-- -.+..||++.+.-+... ..+.++++.++++.||| ..+.++|.+|||||+|||||
T Consensus 74 ~~~~~~~~~~VQmVFQDp~~S-LnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 74 KKRAKAFYRPVQMVFQDPYSS-LNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred cccchhhccceeEEecCCccc-cCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHH
Confidence 46799999998531 11357999988877662 34555668999999999 34688999999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| |+||...+. +.++.+.++ +++.+.|.|+|||| .+..+||||+
T Consensus 153 ARAL~~~PklL--------IlDEpt--SaLD~siQa--~IlnlL~~l------~~~~~lt~l~IsHdl~~v~~~cdRi~- 213 (252)
T COG1124 153 ARALIPEPKLL--------ILDEPT--SALDVSVQA--QILNLLLEL------KKERGLTYLFISHDLALVEHMCDRIA- 213 (252)
T ss_pred HHHhccCCCEE--------EecCch--hhhcHHHHH--HHHHHHHHH------HHhcCceEEEEeCcHHHHHHHhhhee-
Confidence 99999999999 666667 888866544 344444443 24578999999996 8899999995
Q ss_pred EeeCCEEeeeCCcccccCCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|++|++++.++..+++..|.+
T Consensus 214 Vm~~G~ivE~~~~~~l~~~~~h 235 (252)
T COG1124 214 VMDNGQIVEIGPTEELLSHPSH 235 (252)
T ss_pred eeeCCeEEEeechhhhhcCCcc
Confidence 6999999999999999988654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=365.34 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=174.0
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++++++|++++|+++ ++ |+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+.|+.
T Consensus 2 ~~~i~v~nl~v~y~~~-~v-----l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PV-----LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE-ee-----eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4689999999999644 45 999999999999999999999999999999999999 999999999972
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRva 212 (397)
.+||||||...+.+ .++.||+|.+.++.. ..+..++.+.++|++||+.+ .++...+|||||+|||.
T Consensus 71 ~~~~~~IgYVPQ~~~~d~-~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 71 RRKRLRIGYVPQKSSVDR-SFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL 149 (254)
T ss_pred cccCCeEEEcCcccccCC-CCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH
Confidence 57999999775433 456899999999854 12334688999999999954 46667889999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++|+|||| + .++|+.... ...+.+.++ +++|+||++|||| .+.++||+|
T Consensus 150 lARAL~~~p~lllLDEP--------~--~gvD~~~~~--~i~~lL~~l-------~~eg~tIl~vtHDL~~v~~~~D~v- 209 (254)
T COG1121 150 LARALAQNPDLLLLDEP--------F--TGVDVAGQK--EIYDLLKEL-------RQEGKTVLMVTHDLGLVMAYFDRV- 209 (254)
T ss_pred HHHHhccCCCEEEecCC--------c--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCcHHhHhhCCEE-
Confidence 99999999999955555 4 666655443 455555554 2349999999996 999999999
Q ss_pred EEeeCCEEeeeCCcccccCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~ 311 (397)
+ +=+++++..|++++++..+
T Consensus 210 i-~Ln~~~~~~G~~~~~~~~~ 229 (254)
T COG1121 210 I-CLNRHLIASGPPEEVLTEE 229 (254)
T ss_pred E-EEcCeeEeccChhhccCHH
Confidence 5 6678999999999988654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=382.51 Aligned_cols=213 Identities=17% Similarity=0.167 Sum_probs=179.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|++|+++|++++|+++..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 1 m~~l~i~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQV-----IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE 70 (356)
T ss_pred CCEEEEEeEEEEeCCCCEE-----EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 4579999999999323334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.||||||++.+|+ ++||+||+.++.. ...+..+++.++++.+++. ...+++.+|||||||||+|||
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp---~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 71 LEPADRDIAMVFQNYALYP---HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred CCHHHCCEEEEeCCccccC---CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHH
Confidence 367999999999987 7999999998754 2345567788999999994 457788999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++|||||| | ++||..+.. ...+.+.++. .+.|+|+|+|||+ ++..+|||| ++|
T Consensus 148 AL~~~P~llLLDEP--------~--s~LD~~~r~--~l~~~l~~l~------~~~g~tii~vTHd~~ea~~l~D~i-~vl 208 (356)
T PRK11650 148 AIVREPAVFLFDEP--------L--SNLDAKLRV--QMRLEIQRLH------RRLKTTSLYVTHDQVEAMTLADRV-VVM 208 (356)
T ss_pred HHhcCCCEEEEeCC--------c--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 99999999955555 5 777755544 3344444431 2358999999995 899999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++++.|++++++.+|..
T Consensus 209 ~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 209 NGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred eCCEEEEECCHHHHHhCCcc
Confidence 99999999999999988753
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=380.10 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=180.8
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.+++|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 3 ~~~~l~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 71 (351)
T PRK11432 3 QKNFVVLKNITKRFGS-NTV-----IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVT 71 (351)
T ss_pred CCcEEEEEeEEEEECC-eEE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECC
Confidence 3679999999999963 334 999999999999999999999999999999999999 99999999997
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
++++|||||++.+|+ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+|||||||||+||
T Consensus 72 ~~~~~~r~ig~vfQ~~~lfp---~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 72 HRSIQQRDICMVFQSYALFP---HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA 148 (351)
T ss_pred CCCHHHCCEEEEeCCcccCC---CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 378999999999987 7999999999754 3455677889999999994 45677899999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++|||||| + ++||..+.. ...+.+.++. .+.|+|+|+|||| ++..+|||| ++
T Consensus 149 RaL~~~P~lLLLDEP--------~--s~LD~~~r~--~l~~~l~~l~------~~~g~tii~vTHd~~e~~~laD~i-~v 209 (351)
T PRK11432 149 RALILKPKVLLFDEP--------L--SNLDANLRR--SMREKIRELQ------QQFNITSLYVTHDQSEAFAVSDTV-IV 209 (351)
T ss_pred HHHHcCCCEEEEcCC--------c--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEcCCHHHHHHhCCEE-EE
Confidence 999999999955555 4 777755544 3444444431 2358999999995 888999999 46
Q ss_pred eeCCEEeeeCCcccccCCCCC
Q 015952 293 TYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~~~ 313 (397)
|++|++++.|++++++.+|.+
T Consensus 210 m~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 210 MNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred EECCEEEEEcCHHHHHhCCCc
Confidence 999999999999999988764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=369.19 Aligned_cols=217 Identities=17% Similarity=0.208 Sum_probs=188.5
Q ss_pred CeEEEEeEEEEECCCce------------------EeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCC
Q 015952 70 SLTDAKNKILSYTPGAW------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~------------------v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~ 131 (397)
..++++||+|-|+.... ...+-+++|+||+|++||+..|+|-||||||||+|+|++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 46899999999964210 012445899999999999999999999999999999999999
Q ss_pred CCCcccEEEECce--------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC
Q 015952 132 FASERAQVTYNSS--------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH 193 (397)
Q Consensus 132 ~~p~~G~I~i~G~--------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl 193 (397)
|++|+|.++|. ++++++|||++.|++ +.||.||+.|++. ++++.++++.+.++.|||
T Consensus 80 --pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP---hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL 154 (386)
T COG4175 80 --PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPKAEREERALEALELVGL 154 (386)
T ss_pred --CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc---chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc
Confidence 99999999998 478999999999988 8999999999987 678889999999999999
Q ss_pred -cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 194 -GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 194 -~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
+...++|.+|||||||||.|||||+.+|+||||||| ||+||+.... ...+++.++ +.+-++
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEa----------FSALDPLIR~--~mQdeLl~L------q~~l~K 216 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEA----------FSALDPLIRT--EMQDELLEL------QAKLKK 216 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCc----------hhhcChHHHH--HHHHHHHHH------HHHhCC
Confidence 677899999999999999999999999999988888 6888877655 233444332 234689
Q ss_pred eEEEEec--hhHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 273 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 273 TVIivTH--~~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
|||+||| |++.++.|||++ |++|+|++.|+|+|+..+|..
T Consensus 217 TIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAn 258 (386)
T COG4175 217 TIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPAN 258 (386)
T ss_pred eEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccH
Confidence 9999999 499999999975 999999999999999999975
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=378.86 Aligned_cols=212 Identities=14% Similarity=0.154 Sum_probs=179.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
+++|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 2 ~~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA-FTA-----LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITR 70 (353)
T ss_pred CcEEEEEEEEEEeCC-eEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 568999999999963 334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIAr 215 (397)
++.+||+||++.+|+ ++||+||+.|+.. ...+.++++.++++.++|.+ ..+++.+|||||||||+|||
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp---~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 71 LPPQKRDYGIVFQSYALFP---NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred CCHHHCCEEEEeCCcccCC---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHH
Confidence 367999999999987 7999999998754 24456678999999999954 57789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++|||||| + ++||..+.. ...+.+.++. .+.|.|+|+|||+ ++..+|||| ++|
T Consensus 148 aL~~~P~llLLDEP--------~--s~LD~~~r~--~l~~~L~~l~------~~~~~tvi~vTHd~~ea~~l~d~i-~vl 208 (353)
T TIGR03265 148 ALATSPGLLLLDEP--------L--SALDARVRE--HLRTEIRQLQ------RRLGVTTIMVTHDQEEALSMADRI-VVM 208 (353)
T ss_pred HHhcCCCEEEEcCC--------c--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEcCCHHHHHHhCCEE-EEE
Confidence 99999999966666 3 666654443 3444444431 2358999999995 889999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++++.|++++++..|.+
T Consensus 209 ~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 209 NHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred ECCEEEEEcCHHHHHhCCCC
Confidence 99999999999999988763
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=340.10 Aligned_cols=207 Identities=15% Similarity=0.149 Sum_probs=179.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
|+.+++|.++|+.-. . ..+++|+.||++||+||||||||||+|+|+|+.. |.+|+|.++|+
T Consensus 1 ~l~L~~V~~~y~~~~-~-------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~~~ 67 (231)
T COG3840 1 MLALDDVRFSYGHLP-M-------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTASP 67 (231)
T ss_pred CccccceEEeeCcce-E-------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCcCC
Confidence 467899999995322 2 2899999999999999999999999999999999 99999999998
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHH
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL 217 (397)
.+-++++||+.++|. ++||.+|+.++.. -.++.+++++.++.++|+ +...+.|.+||||||||||+||+|
T Consensus 68 P~~RPVSmlFQEnNLFa---HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARcl 144 (231)
T COG3840 68 PAERPVSMLFQENNLFA---HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCL 144 (231)
T ss_pred cccCChhhhhhccccch---hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHH
Confidence 477999999999998 9999999999977 245667889999999999 566777999999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEeeC
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYL 295 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~~ 295 (397)
+++-+|+|+||| |++||+.++. +++..+.++ ..+++.|++|||| +++.+++||+ +++++
T Consensus 145 vR~~PilLLDEP----------FsALdP~LR~--eMl~Lv~~l------~~E~~~TllmVTH~~~Da~~ia~~~-~fl~~ 205 (231)
T COG3840 145 VREQPILLLDEP----------FSALDPALRA--EMLALVSQL------CDERKMTLLMVTHHPEDAARIADRV-VFLDN 205 (231)
T ss_pred hccCCeEEecCc----------hhhcCHHHHH--HHHHHHHHH------HHhhCCEEEEEeCCHHHHHHhhhce-EEEeC
Confidence 999999977777 5888887765 344444443 2468999999999 6999999999 68999
Q ss_pred CEEeeeCCcccccCCCC
Q 015952 296 GELLGIPPAKQIFDIPE 312 (397)
Q Consensus 296 G~iv~~g~~~el~~~~~ 312 (397)
|+|...|+.++++....
T Consensus 206 Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 206 GRIAAQGSTQELLSGKA 222 (231)
T ss_pred CEEEeeccHHHHhccCC
Confidence 99999999999987654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=375.05 Aligned_cols=213 Identities=17% Similarity=0.228 Sum_probs=176.2
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
||+++||+|+|+.+. ...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999995321 1123 999999999999999999999999999999999999 99999999997
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+++|||+||++++++ .+||+||+.++.. ...+.++++.++++.+|+. ....++.+|||||||||
T Consensus 73 ~~~~l~~~r~~Ig~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 73 SNSELTKARRQIGMIFQHFNLLS---SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV 149 (343)
T ss_pred CHHHHHHHhcCEEEEECCccccc---cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 247999999999886 6899999998643 3445667888999999994 45778999999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||+.+.. ..++.+.++. .+.|.|||+|||+ .+.++||||
T Consensus 150 ~IARAL~~~P~iL--------LlDEPt--s~LD~~t~~--~i~~lL~~l~------~~~g~tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 150 AIARALASNPKVL--------LCDEAT--SALDPATTQ--SILELLKEIN------RRLGLTILLITHEMDVVKRICDCV 211 (343)
T ss_pred HHHHHHHhCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999 555555 677755544 3444444431 2348999999995 778999999
Q ss_pred EEEeeCCEEeeeCCcccccCCCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++|++++.|++++++..|.+
T Consensus 212 -~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 212 -AVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred -EEEECCEEEEEcCHHHHHcCCCc
Confidence 56999999999999999987754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=376.69 Aligned_cols=213 Identities=14% Similarity=0.193 Sum_probs=180.2
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.+++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 11 ~~~~L~l~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 79 (375)
T PRK09452 11 LSPLVELRGISKSFDG-KEV-----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDIT 79 (375)
T ss_pred CCceEEEEEEEEEECC-eEE-----EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 4568999999999963 334 999999999999999999999999999999999999 99999999997
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
++.+||+||++.+|+ ++||+||+.|+.. ...+.++++.++++.+++. ...++|.+|||||||||+||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp---~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFP---HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred CCCHHHCCEEEEecCcccCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 367999999999987 7999999998754 2344566788999999994 46778999999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++|||||| + ++||..+.. ...+.+.++. .+.|+|+|+|||| ++..+|||| ++
T Consensus 157 RaL~~~P~llLLDEP--------~--s~LD~~~r~--~l~~~L~~l~------~~~g~tiI~vTHd~~ea~~laDri-~v 217 (375)
T PRK09452 157 RAVVNKPKVLLLDES--------L--SALDYKLRK--QMQNELKALQ------RKLGITFVFVTHDQEEALTMSDRI-VV 217 (375)
T ss_pred HHHhcCCCEEEEeCC--------C--CcCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EE
Confidence 999999999966555 4 677755444 3444554432 2358999999995 889999999 46
Q ss_pred eeCCEEeeeCCcccccCCCCC
Q 015952 293 TYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~~~ 313 (397)
|++|++++.|++++++.+|.+
T Consensus 218 l~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 218 MRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred EECCEEEEEcCHHHHHhCccc
Confidence 999999999999999998864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=383.06 Aligned_cols=271 Identities=17% Similarity=0.176 Sum_probs=210.8
Q ss_pred CCCcCCCCCCcchhhhhHHHHHHHHHH-----------HHH---------------------HHHHhccc----------
Q 015952 24 DFDIPLLSGDDEGSRDSWDSLVDQRRR-----------DAV---------------------FREVLQSY---------- 61 (397)
Q Consensus 24 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---------------------~~~~~~~~---------- 61 (397)
=+||||..||..--.+.++.+.++++. ..- ..++++.+
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHh
Confidence 379999999999999999999998865 111 22222221
Q ss_pred --ccccc----C--------CCCeEEEEeEEEEECCCc-----eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHH
Q 015952 62 --DQLRT----R--------IGSLTDAKNKILSYTPGA-----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 122 (397)
Q Consensus 62 --~~~~~----~--------~~~~lel~nvs~~Y~~~~-----~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~ 122 (397)
+.... . ..++++++||+++|...+ ....+.|++||||+|.+||++||||+||||||||.|+
T Consensus 257 a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~ 336 (539)
T COG1123 257 AVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARI 336 (539)
T ss_pred hCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHH
Confidence 11100 0 346789999999996311 0124566999999999999999999999999999999
Q ss_pred HHcccCCCCCCCcccEEEECce------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHH
Q 015952 123 ISKVFENDKFASERAQVTYNSS------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKL 185 (397)
Q Consensus 123 I~Gl~~~~~~~p~~G~I~i~G~------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~ 185 (397)
|+||++ |++|.|.++|. ++++-+|||+|.- ...+.+||.+++.-+.. ...+.++++.
T Consensus 337 i~gL~~-----P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~-SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~ 410 (539)
T COG1123 337 LAGLLP-----PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS-SLNPRMTVGDILAEPLRIHGGGSGAERRARVA 410 (539)
T ss_pred HhCCCC-----CCCceEEEeCcccccccchhhhhhhheEEEEeCccc-ccCccccHHHHHHhHHhhhcccchHHHHHHHH
Confidence 999999 99999999995 3689999999753 12247899999887654 2355567899
Q ss_pred HHHHHCCCc--ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCC
Q 015952 186 WIMEGVRHG--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 263 (397)
Q Consensus 186 ~ll~~vgl~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~ 263 (397)
++++.++|. ...++|+++||||||||||||||+.+|++| ++|||| |+||..... +.++.+.++
T Consensus 411 ~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~ll--------i~DEp~--SaLDvsvqa--~VlnLl~~l--- 475 (539)
T COG1123 411 ELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLL--------ILDEPV--SALDVSVQA--QVLNLLKDL--- 475 (539)
T ss_pred HHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEE--------EecCCc--cccCHHHHH--HHHHHHHHH---
Confidence 999999994 468999999999999999999999999999 555555 777755444 344444443
Q ss_pred CcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHH
Q 015952 264 PYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (397)
Q Consensus 264 ~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~ 321 (397)
+.+.|.|.|+|||| .+..+||||+ +|++|+||+.|+.+++|..|.++ +++..
T Consensus 476 ---q~e~g~t~lfISHDl~vV~~i~drv~-vm~~G~iVE~G~~~~v~~~p~h~--Ytr~L 529 (539)
T COG1123 476 ---QEELGLTYLFISHDLAVVRYIADRVA-VMYDGRIVEEGPTEKVFENPQHP--YTRKL 529 (539)
T ss_pred ---HHHhCCEEEEEeCCHHHHHhhCceEE-EEECCeEEEeCCHHHHhcCCCCh--HHHHH
Confidence 23569999999996 8999999995 69999999999999999998764 44443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=352.99 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=179.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
++++++|++++|+++..+ |+++||+|++|++++|+||||||||||+++++|+++ |++|.|.++|.
T Consensus 2 ~~i~~~~l~~~y~~~~~~-----l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~~ 71 (235)
T COG1122 2 RMIEAENLSFRYPGRKAA-----LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSSE 71 (235)
T ss_pred ceEEEEEEEEEcCCCcee-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccch
Confidence 579999999999765334 999999999999999999999999999999999999 99999999996
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
++++|||||+|.-.. +.-||.|.++|+.. +.++.++++.++++.+++. ...+.|..|||||||||||
T Consensus 72 ~~~~~~~~~vG~VfQnpd~q~--~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 72 KSLLELRQKVGLVFQNPDDQL--FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred hhHHHhhcceEEEEECccccc--ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHh
Confidence 467999999985422 24699999999976 4567889999999999994 4577799999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
|.+|+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|+|++||| .+..+|||+ +
T Consensus 150 A~vLa~~P~il--------iLDEPt--a~LD~~~~~--~l~~~l~~L~------~~~~~tii~~tHd~~~~~~~ad~v-~ 210 (235)
T COG1122 150 AGVLAMGPEIL--------LLDEPT--AGLDPKGRR--ELLELLKKLK------EEGGKTIIIVTHDLELVLEYADRV-V 210 (235)
T ss_pred hHHHHcCCCEE--------EEcCCC--CCCCHHHHH--HHHHHHHHHH------hcCCCeEEEEeCcHHHHHhhCCEE-E
Confidence 99999999999 666667 788865544 3445554431 2357999999995 999999999 5
Q ss_pred EeeCCEEeeeCCcccccCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~ 311 (397)
+|++|+++.+|+|++++...
T Consensus 211 vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 211 VLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred EEECCEEeecCCHHHHhhhh
Confidence 79999999999999988764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=391.28 Aligned_cols=239 Identities=13% Similarity=0.218 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCC
Q 015952 40 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (397)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpn 112 (397)
++..+...--+.+|+.|.++.+|.++.. -...|+++||+|+|+..+.+.+ |+|+||+|+|||+|||||||
T Consensus 427 ~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPS 503 (716)
T KOG0058|consen 427 FYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPS 503 (716)
T ss_pred HHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCC
Confidence 3333333334678999999999987654 2346999999999976544334 99999999999999999999
Q ss_pred CCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhH
Q 015952 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNI 180 (397)
Q Consensus 113 GsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~ 180 (397)
|+||||+.++|..+|. |++|+|.+||. +++||+|-|+|.||. -||.|||.++.. ..++.
T Consensus 504 GsGKSTiasLL~rfY~-----PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs----~sI~eNI~YG~~~~t~e~i 574 (716)
T KOG0058|consen 504 GSGKSTIASLLLRFYD-----PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS----GSIRENIAYGLDNATDEEI 574 (716)
T ss_pred CCCHHHHHHHHHHhcC-----CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec----ccHHHHHhcCCCCCCHHHH
Confidence 9999999999999999 99999999998 578999999999997 599999999987 22222
Q ss_pred ---------HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhh
Q 015952 181 ---------NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (397)
Q Consensus 181 ---------~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~ 251 (397)
++++.++.+.++. .-..+..+||||||||+||||||++||.|| ||||+| |+||.+++.
T Consensus 575 ~~AAk~ANah~FI~~~p~gY~T-~VGEkG~qLSGGQKQRIAIARALlr~P~VL--------ILDEAT--SALDaeSE~-- 641 (716)
T KOG0058|consen 575 EAAAKMANAHEFITNFPDGYNT-VVGEKGSQLSGGQKQRIAIARALLRNPRVL--------ILDEAT--SALDAESEY-- 641 (716)
T ss_pred HHHHHHhChHHHHHhCcccccc-ccCCccccccchHHHHHHHHHHHhcCCCEE--------EEechh--hhcchhhHH--
Confidence 2233333333333 123458899999999999999999999999 889999 999988765
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
...+.+.+ ..+++|||+|+|+ ...+.||+| +++++|++++.|+++|++..++
T Consensus 642 lVq~aL~~--------~~~~rTVlvIAHRLSTV~~Ad~I-vvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 642 LVQEALDR--------LMQGRTVLVIAHRLSTVRHADQI-VVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHHHHH--------hhcCCeEEEEehhhhHhhhccEE-EEEcCCeEEecccHHHHhhCcc
Confidence 11222222 2467999999998 889999999 5799999999999999998874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=371.90 Aligned_cols=209 Identities=17% Similarity=0.197 Sum_probs=176.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc--cEEEECce----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSS---- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~--G~I~i~G~---- 144 (397)
.|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++ |+|.++|+
T Consensus 5 ~l~~~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 5 GIRIDHLRVAYGA-NTV-----LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEEECC-eEE-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCC
Confidence 4899999999963 334 999999999999999999999999999999999999 999 99999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIAr 215 (397)
++.||||||++.+++ ++||+||+.|+.. ...+.++++.++++.++|.+ ..+++.+|||||||||+|||
T Consensus 74 ~~~~~r~ig~vfQ~~~l~p---~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 74 APPHKRGLALLFQNYALFP---HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred CCHHHCCEEEEECCcccCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHH
Confidence 367999999999987 7999999998754 33455678899999999954 57789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC-CceEEEEech--hHHccccEEEEE
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD-DKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~-g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
||+.+|++|||||| + ++||..+.. ...+.+.++. .+. |+|+|+|||| ++..+|||| ++
T Consensus 151 AL~~~P~llLLDEP--------~--s~LD~~~r~--~l~~~l~~l~------~~~~g~til~vTHd~~ea~~l~dri-~v 211 (362)
T TIGR03258 151 AIAIEPDVLLLDEP--------L--SALDANIRA--NMREEIAALH------EELPELTILCVTHDQDDALTLADKA-GI 211 (362)
T ss_pred HHhcCCCEEEEcCc--------c--ccCCHHHHH--HHHHHHHHHH------HhCCCCEEEEEeCCHHHHHHhCCEE-EE
Confidence 99999999955555 4 677755443 3444444431 223 8999999995 889999999 56
Q ss_pred eeCCEEeeeCCcccccCCCC
Q 015952 293 TYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~~ 312 (397)
|++|++++.|++++++..|.
T Consensus 212 l~~G~i~~~g~~~~~~~~p~ 231 (362)
T TIGR03258 212 MKDGRLAAHGEPQALYDAPA 231 (362)
T ss_pred EECCEEEEEcCHHHHHhCcC
Confidence 99999999999999998875
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=373.24 Aligned_cols=212 Identities=14% Similarity=0.163 Sum_probs=179.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
+++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 17 ~~~l~l~~v~~~~~~-~~~-----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 17 TPLLEIRNLTKSFDG-QHA-----VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSH 85 (377)
T ss_pred CceEEEEeEEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 568999999999953 334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.+||+||++.+|+ ++||.||+.++.. ...+.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 86 ~~~~~r~ig~vfQ~~~lfp---~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 86 VPPYQRPINMMFQSYALFP---HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred CCHHHCCEEEEeCCCccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 367999999999987 8999999998754 3445667888999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++|||||| + ++||..... ...+.+.++. .+.|.|+|+|||| ++..+|||+ ++|
T Consensus 163 AL~~~P~lLLLDEP--------~--s~LD~~~r~--~l~~~l~~l~------~~~g~tii~vTHd~~ea~~laDri-~vl 223 (377)
T PRK11607 163 SLAKRPKLLLLDEP--------M--GALDKKLRD--RMQLEVVDIL------ERVGVTCVMVTHDQEEAMTMAGRI-AIM 223 (377)
T ss_pred HHhcCCCEEEEeCC--------c--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEcCCHHHHHHhCCEE-EEE
Confidence 99999999955555 4 777755444 2334444432 2358999999995 789999999 469
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++++.|++++++.+|..
T Consensus 224 ~~G~i~~~g~~~~~~~~p~~ 243 (377)
T PRK11607 224 NRGKFVQIGEPEEIYEHPTT 243 (377)
T ss_pred eCCEEEEEcCHHHHHhCCcc
Confidence 99999999999999988764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=338.58 Aligned_cols=212 Identities=14% Similarity=0.160 Sum_probs=185.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
++.|+++|+.|+|+... + ||+|||+-++|++++|||.|||||||++|||+=|.. |++|+|.++|+
T Consensus 4 ~~~l~v~dlHK~~G~~e-V-----LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEHE-V-----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccch-h-----hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 46799999999996443 5 999999999999999999999999999999999999 99999999997
Q ss_pred -------------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCC-cccccC
Q 015952 145 -------------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRH-GELVIR 199 (397)
Q Consensus 145 -------------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl-~~~~~~ 199 (397)
+.+.|+|||+++|.. ++||.||+.-... ++.+..++++.+|.++|+ +....|
T Consensus 73 k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWs---HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y 149 (256)
T COG4598 73 KRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWS---HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY 149 (256)
T ss_pred eeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhH---HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC
Confidence 246899999999988 8999999875432 677888999999999999 555789
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
|..|||||+||++|||||+.+|+++ ++|||| |+||+.+-- +.++.+.++ .++|+|+++|||
T Consensus 150 P~~LSGGQQQR~aIARaLameP~vm--------LFDEPT--SALDPElVg--EVLkv~~~L-------AeEgrTMv~VTH 210 (256)
T COG4598 150 PAHLSGGQQQRVAIARALAMEPEVM--------LFDEPT--SALDPELVG--EVLKVMQDL-------AEEGRTMVVVTH 210 (256)
T ss_pred ccccCchHHHHHHHHHHHhcCCceE--------eecCCc--ccCCHHHHH--HHHHHHHHH-------HHhCCeEEEEee
Confidence 9999999999999999999999999 555556 888876533 455666655 368999999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
+ ++...+.++ +++++|.|-+.|+|+++|.+|.++
T Consensus 211 EM~FAR~Vss~v-~fLh~G~iEE~G~P~qvf~nP~S~ 246 (256)
T COG4598 211 EMGFARDVSSHV-IFLHQGKIEEEGPPEQVFGNPQSP 246 (256)
T ss_pred ehhHHHhhhhhe-EEeecceecccCChHHHhcCCCCH
Confidence 5 999999999 689999999999999999999764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=368.54 Aligned_cols=210 Identities=16% Similarity=0.235 Sum_probs=176.9
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 2 ~L~i~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~~~ 70 (353)
T PRK10851 2 SIEIANIKKSFGR-TQV-----LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSRLH 70 (353)
T ss_pred EEEEEEEEEEeCC-eEE-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCC
Confidence 5899999999963 334 999999999999999999999999999999999999 99999999997
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
++.+||+||++.+++ ++||.||+.++.. ...+..+++.++++.+++. ...+++.+|||||||||+|
T Consensus 71 ~~~r~i~~v~Q~~~l~p---~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 71 ARDRKVGFVFQHYALFR---HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred HHHCCEEEEecCcccCC---CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 257999999999887 7999999998743 2344567888999999994 4577899999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++||+||| | ++||..+.. ...+.+.++. .+.|+|+|+|||| ++..+|||| +
T Consensus 148 ArAL~~~P~llLLDEP--------~--s~LD~~~r~--~l~~~L~~l~------~~~g~tii~vTHd~~ea~~~~Dri-~ 208 (353)
T PRK10851 148 ARALAVEPQILLLDEP--------F--GALDAQVRK--ELRRWLRQLH------EELKFTSVFVTHDQEEAMEVADRV-V 208 (353)
T ss_pred HHHHhcCCCEEEEeCC--------C--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-E
Confidence 9999999999955555 5 777765544 3444454431 2358999999995 889999999 5
Q ss_pred EeeCCEEeeeCCcccccCCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|++|++++.|++++++..|.+
T Consensus 209 vl~~G~i~~~g~~~~i~~~p~~ 230 (353)
T PRK10851 209 VMSQGNIEQAGTPDQVWREPAT 230 (353)
T ss_pred EEECCEEEEEcCHHHHHhCccc
Confidence 6999999999999999988754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=367.84 Aligned_cols=212 Identities=17% Similarity=0.237 Sum_probs=176.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|++|+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 m~~l~i~~l~~~~~~-~~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~ 69 (369)
T PRK11000 1 MASVTLRNVTKAYGD-VVI-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND 69 (369)
T ss_pred CCEEEEEEEEEEeCC-eEE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 357999999999963 334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIAr 215 (397)
++.+||+||++.+++ ++||.||+.++.. ...+.++++.++++.+++.+ ..+++.+|||||||||+|||
T Consensus 70 ~~~~~~~i~~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 70 VPPAERGVGMVFQSYALYP---HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred CCHhHCCEEEEeCCcccCC---CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 256999999998887 7899999998643 23445567889999999954 56778999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|+|+|||+ ++..+|||| ++|
T Consensus 147 aL~~~P~lL--------LLDEPt--s~LD~~~~~--~l~~~L~~l~------~~~g~tvI~vTHd~~~~~~~~d~i-~vl 207 (369)
T PRK11000 147 TLVAEPSVF--------LLDEPL--SNLDAALRV--QMRIEISRLH------KRLGRTMIYVTHDQVEAMTLADKI-VVL 207 (369)
T ss_pred HHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HHhCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 999999999 555555 777755444 3344444431 2348999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++++.|++++++..|..
T Consensus 208 ~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 208 DAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred ECCEEEEEcCHHHHHhCccc
Confidence 99999999999999887753
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=393.55 Aligned_cols=243 Identities=13% Similarity=0.224 Sum_probs=197.3
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHhccccccccCC--------CCeEEEEeEEEEECCCce-EeeccCceeeeEEEcCC
Q 015952 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKT 103 (397)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~lel~nvs~~Y~~~~~-v~~~~~L~~isl~I~~G 103 (397)
|......+|..++..+.+.+|+.++++.++|...+. ..-++++||+|+|+...+ + |+|+||+|++|
T Consensus 425 pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~v-----L~~isL~I~~G 499 (709)
T COG2274 425 PITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPV-----LEDLSLEIPPG 499 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcch-----hhceeEEeCCC
Confidence 455677899999999999999999999998855432 235899999999976543 4 99999999999
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLS 173 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~ 173 (397)
|++||||+||||||||+|+|.|+++ |++|+|.+||. |++||||+|++.+|. -|++||+.++
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~----gSI~eNi~l~ 570 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYK-----PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS----GSIRENIALG 570 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc----CcHHHHHhcC
Confidence 9999999999999999999999999 99999999998 689999999999986 5999999998
Q ss_pred CC--ChhhHHHH-----HHHHHHHCCCc---ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 174 DD--ASDNINMI-----KLWIMEGVRHG---ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 174 ~~--~~~~~~~~-----~~~ll~~vgl~---~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
.. ..++..+. +.+....+-++ ........||||||||++|||||+++|+|| +||||| |+|
T Consensus 571 ~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL--------lLDEaT--SaL 640 (709)
T COG2274 571 NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL--------LLDEAT--SAL 640 (709)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE--------EEeCcc--ccc
Confidence 76 21222211 12223333221 123457788999999999999999999999 666667 888
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
|+.++. ...+.+.+. ..|+|+|+|||+ ...+.|||| ++|++|+|+++|+++++...
T Consensus 641 D~~sE~--~I~~~L~~~--------~~~~T~I~IaHRl~ti~~adrI-iVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 641 DPETEA--IILQNLLQI--------LQGRTVIIIAHRLSTIRSADRI-IVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CHhHHH--HHHHHHHHH--------hcCCeEEEEEccchHhhhccEE-EEccCCceeccCCHHHHHHh
Confidence 876665 334444333 578999999996 999999999 57999999999999999866
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=337.80 Aligned_cols=205 Identities=17% Similarity=0.235 Sum_probs=167.2
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++|++++|+. ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~ 69 (235)
T cd03261 1 IELRGLTKSFGG-RTV-----LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLSE 69 (235)
T ss_pred CeEEEEEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccCh
Confidence 578999999953 334 999999999999999999999999999999999999 999999999952
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
+.+||+||++.+++ .+|+.||+.++.. ...+..+++.++++.+++. ...+++.+|||||||||+
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 70 AELYRLRRRMGMLFQSGALFD---SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred hhHHHHhcceEEEccCcccCC---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 35999999988776 6899999987532 2334456778899999994 456678899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||+|||+ ++..+|||+
T Consensus 147 ia~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tvi~vsH~~~~~~~~~d~v- 207 (235)
T cd03261 147 LARALALDPELL--------LYDEPT--AGLDPIASG--VIDDLIRSLK------KELGLTSIMVTHDLDTAFAIADRI- 207 (235)
T ss_pred HHHHHhcCCCEE--------EecCCc--ccCCHHHHH--HHHHHHHHHH------HhcCcEEEEEecCHHHHHHhcCEE-
Confidence 999999999999 555556 777755443 3344444331 1248999999995 788899999
Q ss_pred EEeeCCEEeeeCCcccccC
Q 015952 291 IRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|+++..|++++++.
T Consensus 208 ~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 208 AVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EEEECCeEEEecCHHHHcC
Confidence 5799999999999988764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=352.90 Aligned_cols=207 Identities=13% Similarity=0.154 Sum_probs=172.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++++||+|+|++ ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 6 ~~i~i~~l~k~~~~-~~~-----l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~~ 74 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLV-----VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPSR 74 (306)
T ss_pred ceEEEEeEEEEECC-eEE-----EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEecccc
Confidence 58999999999963 324 999999999999999999999999999999999999 999999999972
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+.|||+||++.++. .+|++||+.+... ...+...++.++++.+++. ...+++.+||||||||++|||
T Consensus 75 ~~~~~~~ig~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 75 ARHARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred hHHHHhcEEEEeccCcCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHH
Confidence 57999999998876 6899999986432 2334456778899999994 456677899999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+++|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++|||| ++|
T Consensus 152 aL~~~P~ll--------lLDEPt--~gLD~~~~~--~l~~~l~~l-------~~~g~till~sH~l~e~~~~~d~i-~il 211 (306)
T PRK13537 152 ALVNDPDVL--------VLDEPT--TGLDPQARH--LMWERLRSL-------LARGKTILLTTHFMEEAERLCDRL-CVI 211 (306)
T ss_pred HHhCCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEECCCHHHHHHhCCEE-EEE
Confidence 999999999 566666 778865544 334444433 2468999999994 889999999 469
Q ss_pred eCCEEeeeCCcccccCC
Q 015952 294 YLGELLGIPPAKQIFDI 310 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~ 310 (397)
++|+++..|+++++...
T Consensus 212 ~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 212 EEGRKIAEGAPHALIES 228 (306)
T ss_pred ECCEEEEECCHHHHHhc
Confidence 99999999999988654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=348.37 Aligned_cols=231 Identities=15% Similarity=0.214 Sum_probs=181.6
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
+|+++|++.+|.... .+.+ ++||||+|++||++||||+|||||||+.+.|+|++++.-..-.+|+|.++|+
T Consensus 1 lL~v~nL~v~f~~~~g~v~a---v~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKA---VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEE---EeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 478999999996433 2334 9999999999999999999999999999999999972211247899999997
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCcc----cccCCCCCCh
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGE----LVIRRSDSSS 205 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~----~~~~~~~lSG 205 (397)
.++|+||||+|.--- .+-++|.+-+.-... .+++..+++.++|+.||+.. .+.+|++|||
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sL-nPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSL-NPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhc-CChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 258999999975311 124555554433222 24556788999999999942 3789999999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||+|||.||.||+.+|++| |+|||| ++||...+. +.++.+.++. .+.|+|+|+|||| .++
T Consensus 157 GMrQRV~IAmala~~P~Ll--------IADEPT--TALDvt~Qa--qIl~Ll~~l~------~e~~~aiilITHDl~vva 218 (316)
T COG0444 157 GMRQRVMIAMALALNPKLL--------IADEPT--TALDVTVQA--QILDLLKELQ------REKGTALILITHDLGVVA 218 (316)
T ss_pred cHHHHHHHHHHHhCCCCEE--------EeCCCc--chhhHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999 556667 788865554 5566666552 3579999999997 899
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHHHHHHH
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 326 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i~~~l 326 (397)
++||||+ +|+.|+||+.|+.+++|.+|.++ +|..++....
T Consensus 219 ~~aDri~-VMYaG~iVE~g~~~~i~~~P~HP--YT~~Ll~s~P 258 (316)
T COG0444 219 EIADRVA-VMYAGRIVEEGPVEEIFKNPKHP--YTRGLLNSLP 258 (316)
T ss_pred HhcceEE-EEECcEEEEeCCHHHHhcCCCCh--HHHHHHHhCc
Confidence 9999996 59999999999999999999875 5665555443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=351.20 Aligned_cols=208 Identities=13% Similarity=0.177 Sum_probs=174.8
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
..++++||+|+|+.+..+ |+||||+|++|+++||+||||||||||+|+|+|+.+ |++|+|.++|.
T Consensus 3 ~~i~~~~l~k~~~~~~~~-----l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~~ 72 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTA-----LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVKE 72 (293)
T ss_pred ceeeecceEEEeCCCCEE-----EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCccC
Confidence 468899999999632335 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIAr 215 (397)
++++||++|++.+++ .+|++||+.|... .....+++++++++.++|.+ ..++..++|+|||||++||+
T Consensus 73 ~~~~~~~igy~~~~~~~~~---~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 73 PAKVRRRIGYVPQEPSLYP---ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred HHHHHhheEEEccCCCCCc---cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHH
Confidence 357999999999887 7999999998654 22345678999999999954 45567889999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC-ceEEEEec--hhHHccccEEEEE
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD-KPVVVVTH--GDLLSLTDRARIR 292 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g-~TVIivTH--~~~~~~aDrI~v~ 292 (397)
||+.+|+++ +||||| ++||+.... ...+.+.++ .++| +||+++|| +++..+|||| ++
T Consensus 150 aL~~~P~ll--------iLDEPt--~GLDp~~~~--~~~~~l~~l-------~~~g~~tvlissH~l~e~~~~~d~v-~i 209 (293)
T COG1131 150 ALLHDPELL--------ILDEPT--SGLDPESRR--EIWELLREL-------AKEGGVTILLSTHILEEAEELCDRV-II 209 (293)
T ss_pred HHhcCCCEE--------EECCCC--cCCCHHHHH--HHHHHHHHH-------HhCCCcEEEEeCCcHHHHHHhCCEE-EE
Confidence 999999999 666667 888876554 344555444 2344 89999999 5999999999 56
Q ss_pred eeCCEEeeeCCcccccCC
Q 015952 293 TYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~ 310 (397)
|++|+++..|+++++...
T Consensus 210 l~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 210 LNDGKIIAEGTPEELKEK 227 (293)
T ss_pred EeCCEEEEeCCHHHHHHh
Confidence 999999999998886543
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=354.87 Aligned_cols=216 Identities=13% Similarity=0.145 Sum_probs=175.7
Q ss_pred CCCeEEEEeEEEEECCCc----------eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 68 IGSLTDAKNKILSYTPGA----------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~----------~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
.+++|+++||+++|+.+. ...+ |+||||+|++||+++|+|+||||||||+++|+|+++ |++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G 76 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDG 76 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCc
Confidence 467999999999995311 1223 999999999999999999999999999999999999 9999
Q ss_pred EEEECce-------------eCcEEEEecCC--CCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCC-c-
Q 015952 138 QVTYNSS-------------VGDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRH-G- 194 (397)
Q Consensus 138 ~I~i~G~-------------~~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl-~- 194 (397)
+|.++|. +++|+||||++ .+++ .+|+.+|+.++.. ..++.++++.++++.+++ .
T Consensus 77 ~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p---~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~ 153 (331)
T PRK15079 77 EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP---RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN 153 (331)
T ss_pred EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH
Confidence 9999997 24699999997 4554 5899999876421 334556778899999999 3
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 195 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 195 ~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
...++|.+|||||+|||+|||||+.+|++| ++|||| ++||..... ..++.+.++. .+.|.|+
T Consensus 154 ~~~~~p~~LSgG~~QRv~iArAL~~~P~ll--------ilDEPt--s~LD~~~~~--~i~~lL~~l~------~~~~~ti 215 (331)
T PRK15079 154 LINRYPHEFSGGQCQRIGIARALILEPKLI--------ICDEPV--SALDVSIQA--QVVNLLQQLQ------REMGLSL 215 (331)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHHH------HHcCCEE
Confidence 357889999999999999999999999999 555556 777755544 3444444431 2358999
Q ss_pred EEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 275 VVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 275 IivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
|+|||| .+.++||||+ +|++|++++.|++++++.+|.+
T Consensus 216 l~iTHdl~~~~~~~dri~-vl~~G~ive~g~~~~i~~~~~~ 255 (331)
T PRK15079 216 IFIAHDLAVVKHISDRVL-VMYLGHAVELGTYDEVYHNPLH 255 (331)
T ss_pred EEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHcCCCC
Confidence 999996 7778999994 6999999999999999987764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=321.72 Aligned_cols=203 Identities=16% Similarity=0.233 Sum_probs=169.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.+|+++++++..+.+. ..+..|++|+|.|++||.++||||||||||||+-+++||.. |++|+|.+.|+
T Consensus 5 ~ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~l 77 (228)
T COG4181 5 NIIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHKL 77 (228)
T ss_pred ceeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhhc
Confidence 3799999999996554 22233999999999999999999999999999999999999 99999999998
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHH
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRM 210 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQR 210 (397)
.+++|||||.+.+.+ ++|..||+.++.. ...+....+.++|+++|| ..+.++|.+||||+|||
T Consensus 78 dEd~rA~~R~~~vGfVFQSF~Lip---~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 78 DEDARAALRARHVGFVFQSFHLIP---NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQR 154 (228)
T ss_pred CHHHHHHhhccceeEEEEeeeccc---cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHH
Confidence 378999999999877 7999999999876 244566778899999999 45689999999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
||||||++..|++|++ |||| ..||..+.. +..+.+.+ +..+.|+|.|+|||| .++.-|+|+
T Consensus 155 VAiARAfa~~P~vLfA--------DEPT--GNLD~~Tg~--~iaDLlF~------lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 155 VALARAFAGRPDVLFA--------DEPT--GNLDRATGD--KIADLLFA------LNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred HHHHHHhcCCCCEEec--------cCCC--CCcchhHHH--HHHHHHHH------HhhhcCceEEEEeCCHHHHHhhhhe
Confidence 9999999999999955 5555 566644443 23333332 234689999999997 778889999
Q ss_pred EEEeeCCEEeee
Q 015952 290 RIRTYLGELLGI 301 (397)
Q Consensus 290 ~v~l~~G~iv~~ 301 (397)
+.|.+|+++++
T Consensus 217 -~r~~~G~l~~~ 227 (228)
T COG4181 217 -LRLRSGRLVED 227 (228)
T ss_pred -eeeecceeccC
Confidence 78999999864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=394.97 Aligned_cols=244 Identities=14% Similarity=0.207 Sum_probs=199.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCc
Q 015952 34 DEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT 104 (397)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge 104 (397)
..++.+.+..+..++.+...+.++++..+..+.. ....++++||+|+|+.++.+.+ |+|+||+|++|+
T Consensus 304 Lgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~I---l~g~sl~i~~G~ 380 (1228)
T KOG0055|consen 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKI---LKGVSLKIPSGQ 380 (1228)
T ss_pred hhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchh---hCCeEEEeCCCC
Confidence 3456678889999999999999999998876542 2346899999999986653444 999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
++||||||||||||++++|.+++. |++|+|.+||. +.+||.|+|+|.+|. .|+.||+.++.
T Consensus 381 ~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~----~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA----TTIRENIRYGK 451 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc----ccHHHHHhcCC
Confidence 999999999999999999999999 99999999998 578999999999986 79999999997
Q ss_pred CC--h---------hhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 175 DA--S---------DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 175 ~~--~---------~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
.. . .+..+++..+.+.++.- ...+..+|||||||||||||||+++|+|| +||||| |+|
T Consensus 452 ~dat~~~i~~a~k~ana~~fi~~lp~g~~T~-vge~g~qLSGGQKQRIAIARalv~~P~IL--------LLDEaT--SaL 520 (1228)
T KOG0055|consen 452 PDATREEIEEAAKAANAHDFILKLPDGYDTL-VGERGVQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SAL 520 (1228)
T ss_pred CcccHHHHHHHHHHccHHHHHHhhHHhhccc-ccCCCCCCChHHHHHHHHHHHHHhCCCEE--------EecCcc--ccc
Confidence 51 2 22334455566666551 12347779999999999999999999999 777778 899
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+..+. .+.+.+ -....|+|.|+|+|+ ...+.||+| ++|++|+|++.|+++|++..+
T Consensus 521 D~~se~------~Vq~AL----d~~~~grTTivVaHRLStIrnaD~I-~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 521 DAESER------VVQEAL----DKASKGRTTIVVAHRLSTIRNADKI-AVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred CHHHHH------HHHHHH----HHhhcCCeEEEEeeehhhhhccCEE-EEEECCEEEEecCHHHHHhcc
Confidence 976654 222222 123579999999997 778889999 579999999999999998765
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=354.32 Aligned_cols=212 Identities=17% Similarity=0.230 Sum_probs=172.3
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
||+++||+++|+.+. ...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 589999999996211 1123 999999999999999999999999999999999999 999999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRv 211 (397)
+.|||+||++.+++ .+|+.||+.++.. ...+.++++.++++.+++.+ ...++.+|||||||||
T Consensus 73 ~~~~~~~~~~~ig~v~q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 73 SEKELRKARRQIGMIFQHFNLLS---SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149 (343)
T ss_pred CHHHHHHHhcCEEEEeCCCccCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 46999999998876 6899999987632 23345567889999999954 5677899999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++.++|||+
T Consensus 150 ~lAraL~~~p~iL--------lLDEPt--s~LD~~~~~--~l~~~L~~l~------~~~g~tiilvtH~~~~i~~~~d~v 211 (343)
T PRK11153 150 AIARALASNPKVL--------LCDEAT--SALDPATTR--SILELLKDIN------RELGLTIVLITHEMDVVKRICDRV 211 (343)
T ss_pred HHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999 555555 677754443 3344444331 2358999999995 778899999
Q ss_pred EEEeeCCEEeeeCCcccccCCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|++++.|++++++..+.
T Consensus 212 -~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 212 -AVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred -EEEECCEEEEEcCHHHHHhCCC
Confidence 5699999999999999987654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=351.84 Aligned_cols=220 Identities=14% Similarity=0.189 Sum_probs=173.1
Q ss_pred CCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 69 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
|++|+++||+++|+... ...+ |+||||+|++||+++|+||||||||||+++|+|++++. ..|++|+|.++|+.
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQ 76 (326)
T ss_pred CceEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECC
Confidence 45799999999996432 1223 99999999999999999999999999999999999721 11389999999972
Q ss_pred ------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc----cccCCCC
Q 015952 146 ------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE----LVIRRSD 202 (397)
Q Consensus 146 ------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~----~~~~~~~ 202 (397)
+.|+||||++. +++ .+++.+++..... ...+.++++.++++.+|+.+ ...++.+
T Consensus 77 ~~~~~~~~~~r~~~i~~v~Q~~~~~l~p---~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~ 153 (326)
T PRK11022 77 RISEKERRNLVGAEVAMIFQDPMTSLNP---CYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ 153 (326)
T ss_pred cCCHHHHHHHhCCCEEEEecCchhhcCC---cCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 25999999984 443 5777776643321 33455677889999999942 3678999
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
|||||+|||+|||||+.+|++| ++|||| ++||..... ..++.+.++. .+.|+|+|+||||
T Consensus 154 LSgGq~QRv~iArAL~~~P~ll--------ilDEPt--s~LD~~~~~--~il~lL~~l~------~~~g~til~iTHdl~ 215 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLL--------IADEPT--TALDVTIQA--QIIELLLELQ------QKENMALVLITHDLA 215 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHH
Confidence 9999999999999999999999 555556 777765544 3445554431 2358999999996
Q ss_pred hHHccccEEEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
.+.++|||| ++|++|+|++.|++++++.+|.++
T Consensus 216 ~~~~~adri-~vm~~G~ive~g~~~~~~~~p~hp 248 (326)
T PRK11022 216 LVAEAAHKI-IVMYAGQVVETGKAHDIFRAPRHP 248 (326)
T ss_pred HHHHhCCEE-EEEECCEEEEECCHHHHhhCCCCh
Confidence 677899999 469999999999999999887653
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=353.19 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=172.8
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.+.+|+++||+|+|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 38 ~~~~i~i~nl~k~y~~-~~~-----l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~ 106 (340)
T PRK13536 38 STVAIDLAGVSKSYGD-KAV-----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVP 106 (340)
T ss_pred CceeEEEEEEEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECC
Confidence 3568999999999963 324 999999999999999999999999999999999999 99999999997
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
++.+||+||++.++. .+|+.||+.+... ...+..+++.++++.+++.+ ..+++.+||||||||++|
T Consensus 107 ~~~~~~~~~ig~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 107 ARARLARARIGVVPQFDNLDL---EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTL 183 (340)
T ss_pred cchHHHhccEEEEeCCccCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHH
Confidence 257999999998876 6899999975321 22334566778999999954 567788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+++|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++|||| +
T Consensus 184 A~aL~~~P~lL--------iLDEPt--~gLD~~~r~--~l~~~l~~l-------~~~g~tilisSH~l~e~~~~~d~i-~ 243 (340)
T PRK13536 184 ARALINDPQLL--------ILDEPT--TGLDPHARH--LIWERLRSL-------LARGKTILLTTHFMEEAERLCDRL-C 243 (340)
T ss_pred HHHHhcCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEECCCHHHHHHhCCEE-E
Confidence 99999999999 556666 777765544 344444443 1358999999994 889999999 4
Q ss_pred EeeCCEEeeeCCcccccCC
Q 015952 292 RTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~ 310 (397)
+|++|+++..|+++++...
T Consensus 244 il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 244 VLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEECCEEEEEcCHHHHHhh
Confidence 6999999999999988654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=350.57 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=174.0
Q ss_pred CCeEEEEeEEEEECCCc-------eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE
Q 015952 69 GSLTDAKNKILSYTPGA-------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~-------~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i 141 (397)
+++|+++||+++|+... .+.+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 46899999999995311 1223 999999999999999999999999999999999999 99999999
Q ss_pred Cce-------------eCcEEEEecCCC--CCCCCCCccHHHHHhcCC-----CChhhHHHHHHHHHHHCCCc--ccccC
Q 015952 142 NSS-------------VGDGTYFLQEYT--IPRGSNSFSLYDTRSLSD-----DASDNINMIKLWIMEGVRHG--ELVIR 199 (397)
Q Consensus 142 ~G~-------------~~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~-----~~~~~~~~~~~~ll~~vgl~--~~~~~ 199 (397)
+|. +++|+||||++. +.+ .+++.+++.... ....+.++++.++++.+|+. ....+
T Consensus 75 ~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p---~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 75 QGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP---RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred CCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC---ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC
Confidence 996 246999999973 444 579988886432 13344567789999999994 34778
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| ++|||| ++||..... ..++.+.++. .+.|+|+|+|||
T Consensus 152 p~~LSgGq~QRv~iArAL~~~P~lL--------ilDEPt--s~LD~~~~~--~i~~lL~~l~------~~~g~til~iTH 213 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALMLDPDVV--------VADEPV--SALDVSVQA--QVLNLMMDLQ------QELGLSYVFISH 213 (327)
T ss_pred CccCCHHHHHHHHHHHHHHcCCCEE--------EEECCC--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeC
Confidence 9999999999999999999999999 555556 777755443 3444444431 235899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
| .+.++||||+ +|++|+|++.|++++++..|.++
T Consensus 214 dl~~~~~~adrv~-vm~~G~ive~g~~~~~~~~p~hp 249 (327)
T PRK11308 214 DLSVVEHIADEVM-VMYLGRCVEKGTKEQIFNNPRHP 249 (327)
T ss_pred CHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCCCCH
Confidence 6 7778999994 69999999999999999887653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=333.52 Aligned_cols=208 Identities=16% Similarity=0.260 Sum_probs=168.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (239)
T cd03296 2 SIEVRNVSKRFGD-FVA-----LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATDVP 70 (239)
T ss_pred EEEEEeEEEEECC-EEe-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCC
Confidence 5899999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
+.++|++|++.++. .+|+.||+.++.. ......+.+.++++.+++.+ ...++.+||||||||++|
T Consensus 71 ~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 71 VQERNVGFVFQHYALFR---HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred ccccceEEEecCCcccC---CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence 46999999988775 5899999987532 11233456788999999954 466788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+|||+ +
T Consensus 148 a~al~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tvii~sH~~~~~~~~~d~i-~ 208 (239)
T cd03296 148 ARALAVEPKVL--------LLDEPF--GALDAKVRK--ELRRWLRRLH------DELHVTTVFVTHDQEEALEVADRV-V 208 (239)
T ss_pred HHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHHHHhCCEE-E
Confidence 99999999999 555555 777755443 2334443321 1248999999995 678999999 5
Q ss_pred EeeCCEEeeeCCcccccCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~ 311 (397)
+|++|++++.|++++++..+
T Consensus 209 ~l~~G~i~~~~~~~~~~~~~ 228 (239)
T cd03296 209 VMNKGRIEQVGTPDEVYDHP 228 (239)
T ss_pred EEECCeEEEecCHHHHhcCC
Confidence 69999999999998887654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=329.93 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=158.3
Q ss_pred eEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
|++++|++++|+++ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 70 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPA-----LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRL 70 (216)
T ss_pred CeEEEEEEEEecCCCeeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhc
Confidence 58999999999643 234 999999999999999999999999999999999999 999999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+.++|+||++.++. .+|+.||+.++.. ......+++.++++.+++. ....++.+||||||||+
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 147 (216)
T TIGR00960 71 RGREIPFLRRHIGMVFQDHRLLS---DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRV 147 (216)
T ss_pred ChhHHHHHHHhceEEecCccccc---cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 36999999988776 5899999987532 2233456788899999994 45667889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||+|||+ ++..+||++
T Consensus 148 ~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 148 AIARAIVHKPPLL--------LADEPT--GNLDPELSR--DIMRLFEEF-------NRRGTTVLVATHDINLVETYRHRT 208 (216)
T ss_pred HHHHHHhcCCCEE--------EEeCCC--CcCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999 555555 777754443 233444332 1358999999995 777899999
Q ss_pred EEEeeCCEE
Q 015952 290 RIRTYLGEL 298 (397)
Q Consensus 290 ~v~l~~G~i 298 (397)
++|++|++
T Consensus 209 -~~l~~G~i 216 (216)
T TIGR00960 209 -LTLSRGRL 216 (216)
T ss_pred -EEEeCCcC
Confidence 56999874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=373.38 Aligned_cols=214 Identities=17% Similarity=0.264 Sum_probs=173.1
Q ss_pred CeEEEEeEEEEECCC--------ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE
Q 015952 70 SLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~--------~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i 141 (397)
++|+++||+++|+.+ ....+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~~ 383 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEIIF 383 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEEE
Confidence 589999999999521 00123 999999999999999999999999999999999999 99999999
Q ss_pred Cce-------------eCcEEEEecCC--CCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc--ccccC
Q 015952 142 NSS-------------VGDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG--ELVIR 199 (397)
Q Consensus 142 ~G~-------------~~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~--~~~~~ 199 (397)
+|. +++|+||||++ .+++ .+||.+|+.++.. ...+.++++.++++.+|+. ...++
T Consensus 384 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 460 (623)
T PRK10261 384 NGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP---RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY 460 (623)
T ss_pred CCEECCcCCHHHHHHhcCCeEEEecCchhhcCC---CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC
Confidence 996 23699999997 3554 5899999876431 2334456788999999994 35778
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||..... ..++.+.++. .+.|.|||+|||
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~ll--------llDEPt--s~LD~~~~~--~i~~ll~~l~------~~~g~tvi~isH 522 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVI--------IADEAV--SALDVSIRG--QIINLLLDLQ------RDFGIAYLFISH 522 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeC
Confidence 9999999999999999999999999 555556 777755444 3444444431 235899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
| .+..+|||| ++|++|++++.|++++++..|.+
T Consensus 523 dl~~v~~~~dri-~vl~~G~iv~~g~~~~i~~~p~~ 557 (623)
T PRK10261 523 DMAVVERISHRV-AVMYLGQIVEIGPRRAVFENPQH 557 (623)
T ss_pred CHHHHHHhCCEE-EEEECCEEEEecCHHHHhcCCCC
Confidence 5 788999999 56999999999999999887654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=357.52 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=173.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|++|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 ~~~L~~~nls~~y~~-~~v-----L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 1 MPMIDVSDLSVEFGD-TTV-----LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEA 69 (402)
T ss_pred CceEEEeeEEEEECC-EEE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCc
Confidence 358999999999963 334 999999999999999999999999999999999999 99999999996
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--------hhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------SDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNR 209 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQ 209 (397)
++++||++|++.++. .+|+.||+.++... ....++++.++++.+++.+ ..+++.+|||||||
T Consensus 70 ~~~~~~~~~ig~v~q~~~l~~---~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQ 146 (402)
T PRK09536 70 LSARAASRRVASVPQDTSLSF---EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQ 146 (402)
T ss_pred CCHHHHhcceEEEccCCCCCC---CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 256999999998866 68999999886431 2344567889999999954 46678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
|++|||||+++|++| +||||| ++||..... ..++.+.++ .++|+|||++||+ ++.++||
T Consensus 147 Rv~IArAL~~~P~iL--------LLDEPt--sgLD~~~~~--~l~~lL~~l-------~~~g~TIIivsHdl~~~~~~ad 207 (402)
T PRK09536 147 RVLLARALAQATPVL--------LLDEPT--ASLDINHQV--RTLELVRRL-------VDDGKTAVAAIHDLDLAARYCD 207 (402)
T ss_pred HHHHHHHHHcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEECCHHHHHHhCC
Confidence 999999999999999 555556 777755433 344444443 1358899999995 8889999
Q ss_pred EEEEEeeCCEEeeeCCcccccCCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+ ++|++|+++..|++++++..+
T Consensus 208 ri-i~l~~G~iv~~G~~~ev~~~~ 230 (402)
T PRK09536 208 EL-VLLADGRVRAAGPPADVLTAD 230 (402)
T ss_pred EE-EEEECCEEEEecCHHHHhCcH
Confidence 99 579999999999999887543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=329.48 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=164.0
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 i~~~~~~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (220)
T cd03265 1 IEVENLVKKYGD-FEA-----VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVREPR 69 (220)
T ss_pred CEEEEEEEEECC-EEe-----eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCcChH
Confidence 579999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHH
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL 217 (397)
+.++|+||++.++. .+|+.+|+.+... ...+..+.+.++++.+++. ....++.+||||||||++|||||
T Consensus 70 ~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 70 EVRRRIGIVFQDLSVDD---ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred HHhhcEEEecCCccccc---cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 46999999988775 6899999987432 2233456788999999994 34667889999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL 295 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~ 295 (397)
+.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++
T Consensus 147 ~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tvi~~tH~~~~~~~~~d~i-~~l~~ 207 (220)
T cd03265 147 VHRPEVL--------FLDEPT--IGLDPQTRA--HVWEYIEKLK------EEFGMTILLTTHYMEEAEQLCDRV-AIIDH 207 (220)
T ss_pred hcCCCEE--------EEcCCc--cCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEeC
Confidence 9999999 555555 777755443 2334443331 1248999999995 788999999 57999
Q ss_pred CEEeeeCCccc
Q 015952 296 GELLGIPPAKQ 306 (397)
Q Consensus 296 G~iv~~g~~~e 306 (397)
|+++..+++++
T Consensus 208 G~i~~~~~~~~ 218 (220)
T cd03265 208 GRIIAEGTPEE 218 (220)
T ss_pred CEEEEeCChHH
Confidence 99999887755
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=327.85 Aligned_cols=209 Identities=14% Similarity=0.184 Sum_probs=177.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
|+++.+++|+|++ .+++ ++||||++++|++++|+|||||||||+||+|++|+. |++|.|+++|.
T Consensus 1 Ml~v~~l~K~y~~--~v~A---vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~~~p 70 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTVRDP 70 (245)
T ss_pred CeeeeehhhhccC--HHhh---hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccccCh
Confidence 6899999999964 2234 999999999999999999999999999999999999 99999999997
Q ss_pred ---eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHH
Q 015952 145 ---VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 145 ---~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArA 216 (397)
+++||++|.+..++. .+|++||+.|... ...+.+.+..++.+.++| +..+++..++|.||||||+||||
T Consensus 71 ~~vrr~IGVl~~e~glY~---RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 71 SFVRRKIGVLFGERGLYA---RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred HHHhhhcceecCCcChhh---hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHH
Confidence 589999997777776 5999999988654 567778899999999999 56788899999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~ 294 (397)
|+++|+++ +||||| ++||..... ...+.+.++ +..|++||++|| .++..+|||+ ++++
T Consensus 148 lvh~P~i~--------vlDEP~--sGLDi~~~r--~~~dfi~q~-------k~egr~viFSSH~m~EvealCDrv-ivlh 207 (245)
T COG4555 148 LVHDPSIL--------VLDEPT--SGLDIRTRR--KFHDFIKQL-------KNEGRAVIFSSHIMQEVEALCDRV-IVLH 207 (245)
T ss_pred HhcCCCeE--------EEcCCC--CCccHHHHH--HHHHHHHHh-------hcCCcEEEEecccHHHHHHhhheE-EEEe
Confidence 99999999 666666 777744332 233333322 357999999999 5999999999 5799
Q ss_pred CCEEeeeCCcccccCCCC
Q 015952 295 LGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 295 ~G~iv~~g~~~el~~~~~ 312 (397)
+|+++..|+++++.....
T Consensus 208 ~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 208 KGEVVLEGSIEALDARTV 225 (245)
T ss_pred cCcEEEcCCHHHHHHHHh
Confidence 999999999988865543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=342.94 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=168.6
Q ss_pred eEEEEeEEEEECCC----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
.|+++||+++|+.+ ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA-----LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEEC
Confidence 48999999999642 124 999999999999999999999999999999999999 999999999962
Q ss_pred -----------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc--c-cccCCCCCCh
Q 015952 146 -----------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG--E-LVIRRSDSSS 205 (397)
Q Consensus 146 -----------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~--~-~~~~~~~lSG 205 (397)
+.|||+||++. ++ ..||+||+.++.. ...+..+++.++++.+|+. . ...++.+|||
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSg 147 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLF----EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSG 147 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccc----cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCH
Confidence 36899999974 33 3699999987542 3344566788999999995 3 4667899999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++.
T Consensus 148 Gq~qrv~iAraL~~~P~ll--------llDEPt--~gLD~~~~~--~l~~~l~~l~------~~~g~tvi~vtHd~~~~~ 209 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKIL--------ILDEPT--AGLDPKGRD--EILNKIKELH------KEYNMTIILVSHSMEDVA 209 (287)
T ss_pred HHHHHHHHHHHHHcCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999 555556 777755443 3444444431 2358999999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
.+|||| ++|++|++++.|++++++..
T Consensus 210 ~~~drv-~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 210 KLADRI-IVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HhCCEE-EEEECCEEEEECCHHHHHhC
Confidence 899999 56999999999999988754
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=332.31 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=167.1
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 69 (236)
T cd03219 1 LEVRGLTKRFGG-LVA-----LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLPP 69 (236)
T ss_pred CeeeeeEEEECC-EEE-----ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCCCCH
Confidence 478999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--------------hhhHHHHHHHHHHHCCCc-ccccCCCCCCh
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------------SDNINMIKLWIMEGVRHG-ELVIRRSDSSS 205 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------------~~~~~~~~~~ll~~vgl~-~~~~~~~~lSG 205 (397)
..++|+||++.+++ .+|+.||+.++... ..+..+.+.++++.+++. ....++.+|||
T Consensus 70 ~~~~~~~i~~v~q~~~l~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 146 (236)
T cd03219 70 HEIARLGIGRTFQIPRLFP---ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSY 146 (236)
T ss_pred HHHHhcCEEEEeccccccc---CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCH
Confidence 35999999998876 68999999875321 223455678899999994 45667889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+.|+|||++||+ ++.
T Consensus 147 G~~qrv~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~vsH~~~~~~ 207 (236)
T cd03219 147 GQQRRLEIARALATDPKLL--------LLDEPA--AGLNPEETE--ELAELIREL-------RERGITVLLVEHDMDVVM 207 (236)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCHHHHH
Confidence 9999999999999999999 555555 677754433 334444333 1368999999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
.+||++ ++|++|+++..|++++++..+
T Consensus 208 ~~~d~i-~~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 208 SLADRV-TVLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred HhCCEE-EEEeCCEEEeecCHHHhccCC
Confidence 999999 569999999999988876543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=355.82 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=164.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--------------eCcEEEEecCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--------------VGDGTYFLQEYTIP 158 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--------------~~~ig~v~Q~~~l~ 158 (397)
|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|. ++.+|||||++.++
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 999999999999999999999999999999999999 99999999996 24799999999998
Q ss_pred CCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccc
Q 015952 159 RGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 233 (397)
Q Consensus 159 ~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~si 233 (397)
+ ++||.||+.++.. ...+..+++.++++.++|. ...++|.+|||||||||+|||||+.+|++||||||
T Consensus 84 ~---~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP---- 156 (363)
T TIGR01186 84 P---HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA---- 156 (363)
T ss_pred C---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 7 7899999988643 2445567889999999994 46778999999999999999999999999955555
Q ss_pred cchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 234 VDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 234 LDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
| ++||+.... ...+.+.++ +.+.|+|||+|||+ ++.++||||+ +|++|++++.|++++++.+|
T Consensus 157 ----~--saLD~~~r~--~l~~~l~~l------~~~~~~Tii~vTHd~~ea~~~~drI~-vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 157 ----F--SALDPLIRD--SMQDELKKL------QATLQKTIVFITHDLDEAIRIGDRIV-IMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred ----c--ccCCHHHHH--HHHHHHHHH------HHhcCCEEEEEeCCHHHHHHhCCEEE-EEeCCEEEeeCCHHHHHhCc
Confidence 4 777765544 333444333 12358999999995 7899999994 69999999999999998877
Q ss_pred CC
Q 015952 312 ES 313 (397)
Q Consensus 312 ~~ 313 (397)
..
T Consensus 222 ~~ 223 (363)
T TIGR01186 222 AN 223 (363)
T ss_pred cc
Confidence 54
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=349.08 Aligned_cols=222 Identities=13% Similarity=0.195 Sum_probs=175.2
Q ss_pred CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc---ccEEEECc
Q 015952 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 143 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~---~G~I~i~G 143 (397)
.+++|+++|++++|+.+ ....+ |+||||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 46789999999999532 11233 999999999999999999999999999999999999 75 99999999
Q ss_pred ee--------------CcEEEEecCC--CCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc----ccc
Q 015952 144 SV--------------GDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE----LVI 198 (397)
Q Consensus 144 ~~--------------~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~----~~~ 198 (397)
.. +.|+||||++ .+++ .+++.+++..... ...+..+++.++++.+++.. ...
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p---~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~ 157 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNP---YMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcC
Confidence 72 3799999998 3444 5788887754321 33445567888999999943 256
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
+|.+|||||+|||+|||||+.+|++| ++|||| ++||..... ..++.+.++. .+.|+|+|+||
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~ll--------ilDEPt--s~LD~~~~~--~i~~lL~~l~------~~~g~til~iT 219 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLL--------IADEPT--TALDVTVQA--QIMTLLNELK------REFNTAIIMIT 219 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEE
Confidence 89999999999999999999999999 555556 777755544 3444444431 23589999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHH
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~ 321 (397)
|| .+.++||||+ +|++|+|++.|++++++..|.++ .+..+
T Consensus 220 Hdl~~~~~~~Dri~-vm~~G~ive~g~~~~i~~~p~~p--yt~~l 261 (330)
T PRK09473 220 HDLGVVAGICDKVL-VMYAGRTMEYGNARDVFYQPSHP--YSIGL 261 (330)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCH--HHHHH
Confidence 96 6678999995 69999999999999999888654 44443
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=345.25 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=170.1
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.+++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~i~~~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (303)
T TIGR01288 3 VAIDLVGVSKSYGD-KVV-----VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPSR 71 (303)
T ss_pred cEEEEEeEEEEeCC-eEE-----EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccc
Confidence 47999999999963 334 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIAr 215 (397)
++.+||+||++.++. .+|+.||+.+... ...+..+++.++++.+++.+ ...++.+||||||||++|||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 72 ARLARVAIGVVPQFDNLDP---EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred HHHHhhcEEEEeccccCCc---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 257999999988776 6899999975321 22334456778999999944 56678899999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+|||+ ++|
T Consensus 149 al~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~l~~~-------~~~g~til~~sH~~~~~~~~~d~i-~~l 208 (303)
T TIGR01288 149 ALINDPQLL--------ILDEPT--TGLDPHARH--LIWERLRSL-------LARGKTILLTTHFMEEAERLCDRL-CVL 208 (303)
T ss_pred HHhcCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEECCCHHHHHHhCCEE-EEE
Confidence 999999999 555556 777765443 334444433 1358999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCC
Q 015952 294 YLGELLGIPPAKQIFDI 310 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~ 310 (397)
++|+++..|+++++...
T Consensus 209 ~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 209 ESGRKIAEGRPHALIDE 225 (303)
T ss_pred ECCEEEEEcCHHHHHhh
Confidence 99999999999888654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=345.85 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=169.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+|+++||+++|+.+.. ....+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~~~ 75 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKNKK 75 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccccc
Confidence 4899999999964321 00112999999999999999999999999999999999999 99999999763
Q ss_pred ----------------------------eCcEEEEecCC--CCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHH
Q 015952 145 ----------------------------VGDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEG 190 (397)
Q Consensus 145 ----------------------------~~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~ 190 (397)
++.||||||++ .++ ..||+||+.|+.. ..++..+++.++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~----~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF----EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccchHHHHHhceEEEeeCcccccc----cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 23589999986 334 3699999998643 344556778999999
Q ss_pred CCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc
Q 015952 191 VRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF 268 (397)
Q Consensus 191 vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~ 268 (397)
+|+. . ..+++.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .
T Consensus 152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lL--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~ 212 (305)
T PRK13651 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFL--------VFDEPT--AGLDPQGVK--EILEIFDNL-------N 212 (305)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------H
Confidence 9994 3 56778999999999999999999999999 555556 777754433 334444433 1
Q ss_pred cCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 269 RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 269 ~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
+.|+|||+|||+ ++.++|||| ++|++|+++++|++++++..+
T Consensus 213 ~~g~tiiivtHd~~~~~~~adrv-~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 213 KQGKTIILVTHDLDNVLEWTKRT-IFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred HCCCEEEEEeeCHHHHHHhCCEE-EEEECCEEEEECCHHHHhcCH
Confidence 458999999995 788999999 569999999999999988654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=333.63 Aligned_cols=209 Identities=18% Similarity=0.230 Sum_probs=169.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (250)
T PRK11264 2 SAIEVKNLVKKFHG-QTV-----LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTA 70 (250)
T ss_pred CcEEEeceEEEECC-eee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcccc
Confidence 47999999999963 334 999999999999999999999999999999999999 999999999851
Q ss_pred --------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-cccCCCCCCh
Q 015952 146 --------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSS 205 (397)
Q Consensus 146 --------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSG 205 (397)
+.++|+||++.+++ .+|+.||+.++.. ......+.+.++++.+++.. ...++.+|||
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 147 (250)
T PRK11264 71 RSLSQQKGLIRQLRQHVGFVFQNFNLFP---HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSG 147 (250)
T ss_pred ccccchhhHHHHhhhhEEEEecCcccCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCCh
Confidence 35899999988775 5899999976421 22334566788999999954 4667889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.
T Consensus 148 Gq~qrv~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVI--------LFDEPT--SALDPELVG--EVLNTIRQL-------AQEKRTMVIVTHEMSFAR 208 (250)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999 555555 777754433 233344333 1358999999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|||+ ++|++|++++.|++++++..+.
T Consensus 209 ~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 236 (250)
T PRK11264 209 DVADRA-IFMDQGRIVEQGPAKALFADPQ 236 (250)
T ss_pred HhcCEE-EEEECCEEEEeCCHHHHhcCCC
Confidence 899999 5699999999999998876554
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=332.18 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=165.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++|+.+..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQA-----LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITKLR 70 (243)
T ss_pred CeEEEeeeeecCCCcce-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhhCC
Confidence 58899999999623335 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------------ChhhHHHHHHHHHHHCCCc-ccccCCCCCC
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------------ASDNINMIKLWIMEGVRHG-ELVIRRSDSS 204 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lS 204 (397)
+.+||+||++.+++ .+|+.||+.++.. ......+++.++++.+++. ....++.+||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 147 (243)
T TIGR02315 71 GKKLRKLRRRIGMIFQHYNLIE---RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLS 147 (243)
T ss_pred HHHHHHHHhheEEEcCCCcccc---cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCC
Confidence 35999999988775 5899999986532 1123345678899999994 4566788999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ .+
T Consensus 148 gG~~qrv~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLI--------LADEPI--ASLDPKTSK--QVMDYLKRIN------KEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHH
Confidence 99999999999999999999 555555 777755433 2334443331 2348999999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccc
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
.++||++ ++|++|++++.|+++++
T Consensus 210 ~~~~d~v-~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 210 KKYADRI-VGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCeE-EEEECCEEEecCCHHHh
Confidence 7999999 56999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=342.01 Aligned_cols=210 Identities=19% Similarity=0.223 Sum_probs=168.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
||+++||+++|+.+.. ....+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 mi~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSSTS 74 (288)
T ss_pred CEEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcccc
Confidence 5899999999963321 00012999999999999999999999999999999999999 999999999962
Q ss_pred ---------CcEEEEecCC--CCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHH
Q 015952 146 ---------GDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRN 208 (397)
Q Consensus 146 ---------~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqk 208 (397)
+.+|||||++ .++. .|+.||+.|+.. ...+.+.++.++++.+++. . ..+.+..||||||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~l~~----~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPESQLFE----ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred ccccHHHHHhhEEEEecCcchhccc----chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 3589999987 4443 699999988643 2345566788999999994 3 4677889999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+|
T Consensus 151 qrvaiA~aL~~~p~il--------lLDEPt--~gLD~~~~~--~l~~~l~~l-------~~~g~til~vtHd~~~~~~~~ 211 (288)
T PRK13643 151 RRVAIAGILAMEPEVL--------VLDEPT--AGLDPKARI--EMMQLFESI-------HQSGQTVVLVTHLMDDVADYA 211 (288)
T ss_pred HHHHHHHHHHhCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCHHHHHHhC
Confidence 9999999999999999 555556 777755433 233344332 1358999999995 778999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
||| ++|++|+++.+|++++++..
T Consensus 212 dri-~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 212 DYV-YLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred CEE-EEEECCEEEEECCHHHHHcC
Confidence 999 57999999999999998764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=339.14 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=164.9
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++++|+.+..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 4 ~l~~~~l~~~~~~~~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKA-----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVNAEN 73 (274)
T ss_pred eEEEEEEEEEeCCCCee-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECCCCC
Confidence 79999999999633334 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 -----GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -----~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.+||+||++. ++ ..|+.+|+.++.. .....++++.++++.+++. .....+.+|||||||||+|
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~l 149 (274)
T PRK13647 74 EKWVRSKVGLVFQDPDDQVF----SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAI 149 (274)
T ss_pred HHHHHhhEEEEecChhhhhc----cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHH
Confidence 46999999973 33 3799999987632 2234456788899999994 4567789999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+.++|||| +
T Consensus 150 araL~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tili~tH~~~~~~~~~d~i-~ 209 (274)
T PRK13647 150 AGVLAMDPDVI--------VLDEPM--AYLDPRGQE--TLMEILDRL-------HNQGKTVIVATHDVDLAAEWADQV-I 209 (274)
T ss_pred HHHHHcCCCEE--------EEECCC--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-E
Confidence 99999999999 555555 677754443 334444433 1358999999995 677899999 5
Q ss_pred EeeCCEEeeeCCccc
Q 015952 292 RTYLGELLGIPPAKQ 306 (397)
Q Consensus 292 ~l~~G~iv~~g~~~e 306 (397)
+|++|++++.|++++
T Consensus 210 ~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 210 VLKEGRVLAEGDKSL 224 (274)
T ss_pred EEECCEEEEECCHHH
Confidence 699999999999864
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=326.34 Aligned_cols=198 Identities=16% Similarity=0.198 Sum_probs=159.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~ 69 (213)
T cd03259 1 LELKGLSKTYGS-VRA-----LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTGVPP 69 (213)
T ss_pred CeeeeeEEEeCC-eee-----ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCcCch
Confidence 478999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.++. .+|+.||+.++.. ......+.+.++++.+++.. ..+.+.+||||||||++|||||+
T Consensus 70 ~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 70 ERRNIGMVFQDYALFP---HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred hhccEEEEcCchhhcc---CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 46999999988775 5899999987532 22334566788999999944 46678899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++|||+ ++|++|
T Consensus 147 ~~p~~l--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~~~~~d~v-~~l~~G 207 (213)
T cd03259 147 REPSLL--------LLDEPL--SALDAKLRE--ELREELKELQ------RELGITTIYVTHDQEEALALADRI-AVMNEG 207 (213)
T ss_pred cCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEecCHHHHHHhcCEE-EEEECC
Confidence 999999 555555 677754433 3344443331 1258999999995 778999999 579999
Q ss_pred EEeeeC
Q 015952 297 ELLGIP 302 (397)
Q Consensus 297 ~iv~~g 302 (397)
++++.|
T Consensus 208 ~i~~~g 213 (213)
T cd03259 208 RIVQVG 213 (213)
T ss_pred EEEecC
Confidence 998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=346.96 Aligned_cols=221 Identities=14% Similarity=0.196 Sum_probs=171.9
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
|++|+++||+++|+.+ ....+ |+||||+|++||+++|+|+||||||||+++|+|++++. ..|++|+|.++|+.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLL 76 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECC
Confidence 4589999999999531 11223 99999999999999999999999999999999998621 12589999999961
Q ss_pred ------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----------ChhhHHHHHHHHHHHCCCcc----cccC
Q 015952 146 ------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----------ASDNINMIKLWIMEGVRHGE----LVIR 199 (397)
Q Consensus 146 ------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----------~~~~~~~~~~~ll~~vgl~~----~~~~ 199 (397)
+.|+||||++.... .+.+|+.+++..... ...+.++++.++++.+||.+ ...+
T Consensus 77 ~~~~~~~~~~~~~~i~~v~Q~~~~~l-~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 77 RLSPRERRKLVGHNVSMIFQEPQSCL-DPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred cCCHHHHHHHhCCCEEEEecCcchhc-CccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 36999999986311 125789998864211 11234567889999999953 3678
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
|.+|||||||||+|||||+.+|++| +||||| ++||..... ..++.+.++. .+.|.|||+|||
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~ll--------ilDEPt--s~LD~~~~~--~i~~lL~~l~------~~~g~tii~itH 217 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLL--------IADEPT--NAMEPTTQA--QIFRLLTRLN------QNNNTTILLISH 217 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEE--------EEeCCC--CcCCHHHHH--HHHHHHHHHH------HhcCCEEEEEEC
Confidence 9999999999999999999999999 555556 777765543 3445554431 235899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
| .+.++|||| ++|++|+|++.|++++++..|.+
T Consensus 218 dl~~v~~~~dri-~vm~~G~ive~g~~~~i~~~p~~ 252 (330)
T PRK15093 218 DLQMLSQWADKI-NVLYCGQTVETAPSKELVTTPHH 252 (330)
T ss_pred CHHHHHHhCCEE-EEEECCEEEEECCHHHHHhCCCC
Confidence 6 777999999 46999999999999999987754
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=329.41 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=168.1
Q ss_pred eEEEEeEEEEECCCc---eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~---~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
||+++|++++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 70 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA-----LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLT 70 (233)
T ss_pred CeEEecceEEccCCCCceee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcc
Confidence 589999999996431 35 999999999999999999999999999999999999 999999999972
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHH
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQ 209 (397)
+.++|+||++.++. .+|+.||+.++.. ........+.++++.+++. .....+.+|||||||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~---~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLS---SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQ 147 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence 45999999998876 5899999987532 2233455678899999994 446678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
|++|||||+.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+||
T Consensus 148 rv~la~al~~~p~ll--------lLDEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 148 RVGIARALANNPKVL--------LCDEAT--SALDPETTQ--SILALLRDIN------RELGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred HHHHHHHHhcCCCEE--------EecCCC--CcCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999 555555 777755443 2334443321 1248999999995 7788999
Q ss_pred EEEEEeeCCEEeeeCCcccccCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++ ++|++|++++.|+++++...
T Consensus 210 ~i-~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 210 RV-AVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred EE-EEEECCEEEEecCHHHHhcC
Confidence 99 56999999999988877643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=364.02 Aligned_cols=255 Identities=16% Similarity=0.179 Sum_probs=192.3
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH-----------HHHHHHHhccc----------------------------c
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR-----------DAVFREVLQSY----------------------------D 62 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~----------------------------~ 62 (397)
+==|||||++||++....+++.+.+..+. ...+.++.+.. .
T Consensus 189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 268 (520)
T TIGR03269 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVE 268 (520)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHhhchhhc
Confidence 44589999999999999998888776432 11111111100 0
Q ss_pred c--cccCCCCeEEEEeEEEEECC---C-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc
Q 015952 63 Q--LRTRIGSLTDAKNKILSYTP---G-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (397)
Q Consensus 63 ~--~~~~~~~~lel~nvs~~Y~~---~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~ 136 (397)
. ......++|+++||+++|++ + ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++
T Consensus 269 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~i-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~ 338 (520)
T TIGR03269 269 KECEVEVGEPIIKVRNVSKRYISVDRGVVKA-----VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTS 338 (520)
T ss_pred cccccCCCCceEEEeccEEEeccCCCCCceE-----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCC
Confidence 0 00013458999999999952 2 234 999999999999999999999999999999999999 999
Q ss_pred cEEEEC-ce----------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCcc-
Q 015952 137 AQVTYN-SS----------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGE- 195 (397)
Q Consensus 137 G~I~i~-G~----------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~~- 195 (397)
|+|.++ |. ++++||+||++.++. .+|+.||+.++.. .....++++.++++.+++..
T Consensus 339 G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 415 (520)
T TIGR03269 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP---HRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE 415 (520)
T ss_pred eEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC---CCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc
Confidence 999995 41 235999999987766 6899999976421 22234456788999999943
Q ss_pred -----cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC
Q 015952 196 -----LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD 270 (397)
Q Consensus 196 -----~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~ 270 (397)
..+++.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.
T Consensus 416 ~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lL--------llDEPt--~~LD~~~~~--~l~~~l~~l~------~~~ 477 (520)
T TIGR03269 416 KAEEILDKYPDELSEGERHRVALAQVLIKEPRIV--------ILDEPT--GTMDPITKV--DVTHSILKAR------EEM 477 (520)
T ss_pred cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HHc
Confidence 46778999999999999999999999999 555556 777755443 3344444331 234
Q ss_pred CceEEEEech--hHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 271 DKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 271 g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
|+|||+|||+ .+.++|||+ ++|++|+++..|++++++
T Consensus 478 g~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 478 EQTFIIVSHDMDFVLDVCDRA-ALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred CcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCHHHHH
Confidence 8999999995 788999999 579999999999887764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=326.52 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=163.5
Q ss_pred EEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|+++||++.|+++ .++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (220)
T cd03263 1 LQIRNLTKTYKKGTKPA-----VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRTDR 70 (220)
T ss_pred CEEEeeEEEeCCCCcee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccch
Confidence 5789999999642 335 999999999999999999999999999999999999 999999999972
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArA 216 (397)
+.++|+||++.++. .+|+.+|+.+... ......+.+.++++.+++. ....++.+||||||||++||||
T Consensus 71 ~~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 71 KAARQSLGYCPQFDALFD---ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred HHHhhhEEEecCcCCccc---cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 46999999988775 5899999987532 2233456678899999994 4466788999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|+.+|++| +||||| ++||+.... ...+.+.++ .+++|||++||+ .+.++||++ ++|+
T Consensus 148 l~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sH~~~~~~~~~d~i-~~l~ 206 (220)
T cd03263 148 LIGGPSVL--------LLDEPT--SGLDPASRR--AIWDLILEV--------RKGRSIILTTHSMDEAEALCDRI-AIMS 206 (220)
T ss_pred HhcCCCEE--------EECCCC--CCCCHHHHH--HHHHHHHHH--------hcCCEEEEEcCCHHHHHHhcCEE-EEEE
Confidence 99999999 555555 677754433 233444332 235899999995 777899999 5699
Q ss_pred CCEEeeeCCcccc
Q 015952 295 LGELLGIPPAKQI 307 (397)
Q Consensus 295 ~G~iv~~g~~~el 307 (397)
+|++++.|+++++
T Consensus 207 ~g~i~~~~~~~~~ 219 (220)
T cd03263 207 DGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEecCCHHHc
Confidence 9999999887654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=327.45 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=177.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
++.|.++|+.|+|++. .+ +++|||+|++||+|+|+|||||||||.+.++.||.+ |++|+|.++|.
T Consensus 2 ~~~L~a~~l~K~y~kr-~V-----v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT~ 70 (243)
T COG1137 2 MSTLVAENLAKSYKKR-KV-----VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDITK 70 (243)
T ss_pred CcEEEehhhhHhhCCe-ee-----eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCccccc
Confidence 4679999999999643 35 999999999999999999999999999999999999 99999999997
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----C--hhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----A--SDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRM 210 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~--~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQR 210 (397)
+..|||+||++.+|. .+||.||+..... . ..+.+.+++++|+.+++.+. +.+..+||||||+|
T Consensus 71 lPm~~RArlGigYLpQE~SIFr---~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR 147 (243)
T COG1137 71 LPMHKRARLGIGYLPQEASIFR---KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRR 147 (243)
T ss_pred CChHHHhhcCcccccccchHhh---cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHH
Confidence 457999999999999 7999999987654 1 22445567899999999665 55677899999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDr 288 (397)
+.|||||+.+|+++||||| |++.|+..-. ...+.+..+ +.+|..|++.-| ++...+|||
T Consensus 148 ~EIARaLa~~P~fiLLDEP----------FAGVDPiaV~--dIq~iI~~L-------~~rgiGvLITDHNVREtL~i~dR 208 (243)
T COG1137 148 VEIARALAANPKFILLDEP----------FAGVDPIAVI--DIQRIIKHL-------KDRGIGVLITDHNVRETLDICDR 208 (243)
T ss_pred HHHHHHHhcCCCEEEecCC----------ccCCCchhHH--HHHHHHHHH-------HhCCceEEEccccHHHHHhhhhe
Confidence 9999999999999977777 4666655432 222333332 357999999999 499999999
Q ss_pred EEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
.++ +++|++.+.|+|+++.++|...
T Consensus 209 aYI-i~~G~vla~G~p~ei~~n~~Vr 233 (243)
T COG1137 209 AYI-ISDGKVLAEGSPEEIVNNEDVR 233 (243)
T ss_pred EEE-EecCeEEecCCHHHHhcChhhh
Confidence 975 9999999999999999887543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=332.42 Aligned_cols=211 Identities=16% Similarity=0.220 Sum_probs=175.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.+++++++++|+|+ + +.+ ++||||++++||+++||||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 2 ~~lL~v~~l~k~FG-G--l~A---l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~ 70 (250)
T COG0411 2 TPLLEVRGLSKRFG-G--LTA---VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITG 70 (250)
T ss_pred CceeeeccceeecC-C--EEE---EeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCC
Confidence 35799999999995 3 244 999999999999999999999999999999999999 99999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----------------ChhhHHHHHHHHHHHCCCccc-ccCC
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----------------ASDNINMIKLWIMEGVRHGEL-VIRR 200 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----------------~~~~~~~~~~~ll~~vgl~~~-~~~~ 200 (397)
+..|+.-||.+.+|+ ++||.||+..+.. ...+..+++.++|+.+||.+. +...
T Consensus 71 l~p~~iar~Gi~RTFQ~~rlF~---~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 71 LPPHRIARLGIARTFQITRLFP---GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA 147 (250)
T ss_pred CCHHHHHhccceeecccccccC---CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh
Confidence 356888899999998 8999999988632 235567889999999999654 5556
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+||+|||+|+.|||||+.+|++|||||| . ++|.+... ....+.+.++ ....|.||++|.||
T Consensus 148 ~~LsyG~qR~LEIArALa~~P~lLLLDEP--------a--AGln~~e~--~~l~~~i~~i------~~~~g~tillIEHd 209 (250)
T COG0411 148 GNLSYGQQRRLEIARALATQPKLLLLDEP--------A--AGLNPEET--EELAELIREL------RDRGGVTILLIEHD 209 (250)
T ss_pred hcCChhHhHHHHHHHHHhcCCCEEEecCc--------c--CCCCHHHH--HHHHHHHHHH------HhcCCcEEEEEEec
Confidence 77999999999999999999999955555 4 66664322 2344444443 12367999999995
Q ss_pred --hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 281 --DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 281 --~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+..+||||+ +|+.|+++++|+|+++.++|.
T Consensus 210 M~~Vm~l~dri~-Vl~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 210 MKLVMGLADRIV-VLNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred cHHHhhhccEEE-eccCCcCcccCCHHHHhcCHH
Confidence 9999999995 699999999999999988875
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=341.36 Aligned_cols=208 Identities=17% Similarity=0.176 Sum_probs=168.1
Q ss_pred eEEEEeEEEEECCC----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
.++++||+++|++. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~-----L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i 71 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRA-----LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEEEECCCCcccccc-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEEC
Confidence 38999999999632 223 999999999999999999999999999999999999 999999999962
Q ss_pred -------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-c-cccCCCCCC
Q 015952 146 -------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-E-LVIRRSDSS 204 (397)
Q Consensus 146 -------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lS 204 (397)
+.|||+||++. ++. .||+||+.++.. ...+..+++.++++.++|. . ...++.+||
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (290)
T PRK13634 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLFE----ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147 (290)
T ss_pred ccccccchHHHHHhhEEEEeeCchhhhhh----hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence 36999999973 443 699999987643 2334456788999999995 4 466789999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
|||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|.|||++||+ ++
T Consensus 148 gGq~qrv~lAraL~~~P~ll--------llDEPt--~~LD~~~~~--~l~~~L~~l~------~~~g~tviiitHd~~~~ 209 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVL--------VLDEPT--AGLDPKGRK--EMMEMFYKLH------KEKGLTTVLVTHSMEDA 209 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHH
Confidence 99999999999999999999 555555 677754433 3344443331 2358999999995 78
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
.++|||| ++|++|+++++|++++++..+
T Consensus 210 ~~~~drv-~~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 210 ARYADQI-VVMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHhCCEE-EEEECCEEEEECCHHHHhcCH
Confidence 8999999 569999999999999887654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=366.87 Aligned_cols=240 Identities=11% Similarity=0.170 Sum_probs=190.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
.....+..++....+.+|+.++++.+++.... ...-++++||+|+|++++++ |+|+||+|++||.+|||
T Consensus 287 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~Ge~vaiV 361 (567)
T COG1132 287 QLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPGEKVAIV 361 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCCCEEEEE
Confidence 34455667777788899999999986653332 12348999999999754446 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--Ch
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--AS 177 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~ 177 (397)
||||||||||+|+|+|+++ |++|+|.+||. ++.|+||+|++.+|. -|+.||+.++.. ..
T Consensus 362 G~sGsGKSTl~~LL~r~~~-----~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~----~TI~~NI~~g~~~at~ 432 (567)
T COG1132 362 GPSGSGKSTLIKLLLRLYD-----PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS----GTIRENIALGRPDATD 432 (567)
T ss_pred CCCCCCHHHHHHHHhccCC-----CCCCeEEECCEehhhcCHHHHHHhccEEcccceeec----ccHHHHHhcCCCCCCH
Confidence 9999999999999999999 99999999997 578999999999996 699999999975 23
Q ss_pred hhHHHHH-----HHHHHHC--CCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchh
Q 015952 178 DNINMIK-----LWIMEGV--RHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (397)
Q Consensus 178 ~~~~~~~-----~~ll~~v--gl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~ 249 (397)
++..+.+ .+.+..+ |++. ...++..||||||||++||||++++|++| +||||| +++|..++.
T Consensus 433 eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL--------ILDEaT--SalD~~tE~ 502 (567)
T COG1132 433 EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL--------ILDEAT--SALDTETEA 502 (567)
T ss_pred HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE--------EEeccc--cccCHHhHH
Confidence 3333222 2223333 3322 23456788999999999999999999999 777778 899977765
Q ss_pred hhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 250 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 250 ~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
...+.+.++ .+++|+|+|+|+ ...+.||+| ++|++|++++.|++++++..
T Consensus 503 --~I~~~l~~l--------~~~rT~iiIaHRlsti~~aD~I-iVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 503 --LIQDALKKL--------LKGRTTLIIAHRLSTIKNADRI-IVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred --HHHHHHHHH--------hcCCEEEEEeccHhHHHhCCEE-EEEECCEEEEecCHHHHHHc
Confidence 233444332 356899999997 666679999 57999999999999999876
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=336.34 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=170.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++|+++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 5 ~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 5 ANLVDMRGVSFTRGN-RCI-----FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA 73 (269)
T ss_pred cceEEEeCeEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 568999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQ 209 (397)
+.++|+||++.++. .+|+.||+.++.. .....+..+.++++.+++. ....++.+|||||||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q 150 (269)
T PRK11831 74 MSRSRLYTVRKRMSMLFQSGALFT---DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMAR 150 (269)
T ss_pred cChhhHHHHhhcEEEEecccccCC---CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 35999999988776 6899999986422 1223345677899999994 456778999999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++||
T Consensus 151 rv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 151 RAALARAIALEPDLI--------MFDEPF--VGQDPITMG--VLVKLISELN------SALGVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred HHHHHHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHHH------HhcCcEEEEEecCHHHHHHhhC
Confidence 999999999999999 555556 777754433 3344444331 2348999999995 7889999
Q ss_pred EEEEEeeCCEEeeeCCcccccCCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
++ ++|++|+++..|++++++..+
T Consensus 213 ~v-~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 213 HA-YIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred EE-EEEECCEEEEeCCHHHHhcCC
Confidence 99 569999999999999887653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=328.29 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=166.4
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++||+++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 69 (232)
T cd03218 1 LRAENLSKRYGK-RKV-----VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLPM 69 (232)
T ss_pred CeEEEEEEEeCC-EEe-----eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccCCH
Confidence 578999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIAr 215 (397)
..++|+||++.+++ .+|+.||+.++.. ........+.++++.+++.+ ....+.+||||||||++|||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 70 HKRARLGIGYLPQEASIFR---KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred hHHHhccEEEecCCccccc---cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 35999999988776 5899999987532 22334456788999999944 56678899999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.++||++ ++|
T Consensus 147 al~~~p~ll--------llDEPt--~~LD~~~~~--~~~~~l~~~-------~~~~~tii~~sH~~~~~~~~~d~i-~~l 206 (232)
T cd03218 147 ALATNPKFL--------LLDEPF--AGVDPIAVQ--DIQKIIKIL-------KDRGIGVLITDHNVRETLSITDRA-YII 206 (232)
T ss_pred HHhcCCCEE--------EecCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 999999999 555556 777755443 333444333 1358999999995 789999999 579
Q ss_pred eCCEEeeeCCcccccC
Q 015952 294 YLGELLGIPPAKQIFD 309 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~ 309 (397)
++|+++..|++++++.
T Consensus 207 ~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 207 YEGKVLAEGTPEEIAA 222 (232)
T ss_pred ECCeEEEEeCHHHhhc
Confidence 9999999998887754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=328.90 Aligned_cols=204 Identities=17% Similarity=0.184 Sum_probs=164.5
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++||+++|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 1 IEVENLSKTYPNGKKA-----LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLKG 70 (241)
T ss_pred CEEeeEEEecCCccEE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccccCH
Confidence 4789999999642335 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------------ChhhHHHHHHHHHHHCCCc-ccccCCCCCCh
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSS 205 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSG 205 (397)
+.++|+||++.++. .+|+.+|+.++.. ......+.+.++++.+++. ....++.+|||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 147 (241)
T cd03256 71 KALRQLRRQIGMIFQQFNLIE---RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSG 147 (241)
T ss_pred hHHHHHHhccEEEcccCcccc---cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCH
Confidence 35999999988776 5899999986532 1123345677899999994 45667889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++.
T Consensus 148 G~~qrv~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 148 GQQQRVAIARALMQQPKLI--------LADEPV--ASLDPASSR--QVMDLLKRIN------REEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999 555556 777755443 2334443321 2358999999995 777
Q ss_pred ccccEEEEEeeCCEEeeeCCcccc
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
.+||++ ++|++|++++.|+++++
T Consensus 210 ~~~d~v-~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 210 EYADRI-VGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HhCCEE-EEEECCEEEeecCHHHh
Confidence 899999 56999999999988775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=338.38 Aligned_cols=211 Identities=16% Similarity=0.198 Sum_probs=168.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++++||+++|++.....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 37999999999963211112 999999999999999999999999999999999999 999999999972
Q ss_pred ------CcEEEEecCCC-CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 ------GDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 ------~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.+||+||++. .+. ..||.||+.++.. ..++..+++.++++.+++. .....+.+||||||||++|
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~l 151 (279)
T PRK13650 75 NVWDIRHKIGMVFQNPDNQFV---GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI 151 (279)
T ss_pred cHHHHHhhceEEEcChHHhcc---cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 46999999973 333 4799999988643 2334556788999999995 4567789999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ .+ ..|||| +
T Consensus 152 Aral~~~p~lL--------lLDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tilivtH~~~~~-~~~dri-~ 211 (279)
T PRK13650 152 AGAVAMRPKII--------ILDEAT--SMLDPEGRL--ELIKTIKGIR------DDYQMTVISITHDLDEV-ALSDRV-L 211 (279)
T ss_pred HHHHHcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHH-HhCCEE-E
Confidence 99999999999 555555 677754333 3334443331 1248999999995 55 689999 5
Q ss_pred EeeCCEEeeeCCcccccCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~ 311 (397)
+|++|+++..|++++++..+
T Consensus 212 ~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 212 VMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred EEECCEEEEECCHHHHHcCh
Confidence 69999999999999887654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=325.18 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=162.2
Q ss_pred EEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
++++|++++|+++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~~~i-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA-----LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTG 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEE-----EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc
Confidence 5789999999642 334 999999999999999999999999999999999999 999999999963
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.++. .+|+.||+.++.. ......+.+.++++.+++. ...+++.+||||||||++|||||+
T Consensus 71 ~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 71 PGPDRGYVFQQDALLP---WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA 147 (220)
T ss_pred ccCcEEEEeccccccc---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 57999999988776 5899999987532 1233456778899999994 456678999999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee--
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY-- 294 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~-- 294 (397)
.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+||++ ++|+
T Consensus 148 ~~p~ll--------lLDEPt--~~LD~~~~~--~~~~~l~~~~------~~~~~tiii~sH~~~~~~~~~d~i-~~l~~~ 208 (220)
T cd03293 148 VDPDVL--------LLDEPF--SALDALTRE--QLQEELLDIW------RETGKTVLLVTHDIDEAVFLADRV-VVLSAR 208 (220)
T ss_pred cCCCEE--------EECCCC--CCCCHHHHH--HHHHHHHHHH------HHcCCEEEEEecCHHHHHHhCCEE-EEEECC
Confidence 999999 555555 677755443 2334443321 2358999999995 678999999 5698
Q ss_pred CCEEeeeCCc
Q 015952 295 LGELLGIPPA 304 (397)
Q Consensus 295 ~G~iv~~g~~ 304 (397)
+|++++.++.
T Consensus 209 ~G~i~~~~~~ 218 (220)
T cd03293 209 PGRIVAEVEV 218 (220)
T ss_pred CCEEEEEEEe
Confidence 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=325.03 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=161.6
Q ss_pred eEEEEeEEEEECCCc---eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~---~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
|++++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i-----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 70 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA-----VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVV 70 (218)
T ss_pred CeEEEEEEEecCCCCcccee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEcc
Confidence 588999999996431 34 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.++|+||++.++. .+|+.||+.+... ...+..+.+.++++.+++. ...+++.+||||||||++|
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 147 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYD---RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAI 147 (218)
T ss_pred cCHHHHHhhEEEecCCcccCc---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHH
Confidence 46999999998776 6899999976432 2334456788899999994 4567788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+|||+ +
T Consensus 148 aral~~~p~il--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~tH~~~~~~~~~d~i-~ 207 (218)
T cd03266 148 ARALVHDPPVL--------LLDEPT--TGLDVMATR--ALREFIRQL-------RALGKCILFSTHIMQEVERLCDRV-V 207 (218)
T ss_pred HHHHhcCCCEE--------EEcCCC--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhcCEE-E
Confidence 99999999999 555555 677754433 233444332 1358999999995 788999999 5
Q ss_pred EeeCCEEeeeC
Q 015952 292 RTYLGELLGIP 302 (397)
Q Consensus 292 ~l~~G~iv~~g 302 (397)
+|++|++++.|
T Consensus 208 ~l~~G~i~~~~ 218 (218)
T cd03266 208 VLHRGRVVYEG 218 (218)
T ss_pred EEECCEEeecC
Confidence 69999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=328.35 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=169.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ~~~l~~~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 69 (241)
T PRK14250 1 MNEIEFKEVSYSSFG-KEI-----LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIKT 69 (241)
T ss_pred CceEEEEeEEEEeCC-eee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhh
Confidence 357899999999963 334 999999999999999999999999999999999999 99999999996
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArA 216 (397)
++.++|+||++.++. .|+.+|+.++..........+.++++.+++. . ..+++.+||||||||++||||
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 70 IDVIDLRRKIGMVFQQPHLFE----GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred cChHHhhhcEEEEecCchhch----hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 246999999988764 6999999875431112234677889999994 3 466788999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|+
T Consensus 146 l~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tii~~sH~~~~~~~~~d~i-~~l~ 206 (241)
T PRK14250 146 LANNPEVL--------LLDEPT--SALDPTSTE--IIEELIVKLK------NKMNLTVIWITHNMEQAKRIGDYT-AFLN 206 (241)
T ss_pred HhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeccHHHHHHhCCEE-EEEe
Confidence 99999999 555556 777754433 2334443321 1248999999995 778899999 5799
Q ss_pred CCEEeeeCCcccccCCCC
Q 015952 295 LGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 295 ~G~iv~~g~~~el~~~~~ 312 (397)
+|+++..|++++++..+.
T Consensus 207 ~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 207 KGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred CCEEEEeCCHHHHhcCCC
Confidence 999999999999887654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=373.93 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=187.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLL 107 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~va 107 (397)
......+..++..+.+.+|+.++++.+++.... ....++++||+|+|++. .++ |+|+||+|++||.+|
T Consensus 409 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~v-----L~~isl~i~~Ge~va 483 (686)
T TIGR03797 409 TQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLI-----LDDVSLQIEPGEFVA 483 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCccc-----eeeeEEEECCCCEEE
Confidence 345566778888888999999999876553221 12359999999999533 335 999999999999999
Q ss_pred EECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh
Q 015952 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 177 (397)
Q Consensus 108 LvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~ 177 (397)
|+||||||||||+|+|+|+++ |++|+|.+||. ++.||||+|++.+|+ -|++||+.++.. .
T Consensus 484 IvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~----gTI~eNi~~~~~-~ 553 (686)
T TIGR03797 484 IVGPSGSGKSTLLRLLLGFET-----PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS----GSIFENIAGGAP-L 553 (686)
T ss_pred EECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc----ccHHHHHhcCCC-C
Confidence 999999999999999999999 99999999997 468999999999987 599999999754 1
Q ss_pred hhHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 178 DNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 178 ~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
..+.+.++++.+++++. ......||||||||++|||||+++|++| +||||| ++||+
T Consensus 554 --~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL--------iLDEpT--S~LD~ 621 (686)
T TIGR03797 554 --TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL--------LFDEAT--SALDN 621 (686)
T ss_pred --CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--cCCCH
Confidence 12345556666666321 1234668999999999999999999999 666666 78886
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
.++. ...+.+.+ .++|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 622 ~te~--~i~~~L~~----------~~~T~IiItHr~~~i~~~D~I-ivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 622 RTQA--IVSESLER----------LKVTRIVIAHRLSTIRNADRI-YVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHH--HHHHHHHH----------hCCeEEEEecChHHHHcCCEE-EEEECCEEEEECCHHHHHhC
Confidence 5554 22333321 25799999996 777889999 57999999999999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=353.04 Aligned_cols=215 Identities=13% Similarity=0.189 Sum_probs=173.4
Q ss_pred CeEEEEeEEEEECCCceEee-------------------ccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCC
Q 015952 70 SLTDAKNKILSYTPGAWIEN-------------------VGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~-------------------~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~ 130 (397)
.+|+++||+|.|+.... ++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-- 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQ-RAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-- 79 (400)
T ss_pred cEEEEeeeEEecCCChH-HHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--
Confidence 36888999988864321 00 114999999999999999999999999999999999999
Q ss_pred CCCCcccEEEECcee--------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCC
Q 015952 131 KFASERAQVTYNSSV--------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVR 192 (397)
Q Consensus 131 ~~~p~~G~I~i~G~~--------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vg 192 (397)
|++|+|.++|.. +.+||+||++.+++ ++|+.||+.++.. ...+..+++.++++.++
T Consensus 80 ---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~---~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~g 153 (400)
T PRK10070 80 ---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP---HMTVLDNTAFGMELAGINAEERREKALDALRQVG 153 (400)
T ss_pred ---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 999999999962 36999999998876 6899999988642 23444567888999999
Q ss_pred Cc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 193 HG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 193 l~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
+. ...+++.+|||||||||+|||||+.+|++|||||| | ++||+.... ...+.+.++. .+.|
T Consensus 154 L~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP--------t--s~LD~~~r~--~l~~~L~~l~------~~~g 215 (400)
T PRK10070 154 LENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA--------F--SALDPLIRT--EMQDELVKLQ------AKHQ 215 (400)
T ss_pred CChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC--------C--ccCCHHHHH--HHHHHHHHHH------HHCC
Confidence 94 45778999999999999999999999999955555 5 777755443 3334443331 2358
Q ss_pred ceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 272 KPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 272 ~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+|||++||+ ++.++|||| ++|++|+++..|++++++..|.
T Consensus 216 ~TIIivTHd~~~~~~~~Dri-~vL~~G~i~~~g~~~~l~~~~~ 257 (400)
T PRK10070 216 RTIVFISHDLDEAMRIGDRI-AIMQNGEVVQVGTPDEILNNPA 257 (400)
T ss_pred CeEEEEECCHHHHHHhCCEE-EEEECCEEEecCCHHHHHhCcc
Confidence 999999995 788999999 5699999999999999887664
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=324.51 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
+|++++||+..|+. +++ |++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|+
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~~ 70 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITGL 70 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCCC
Confidence 68999999999964 244 999999999999999999999999999999999999 99999999998
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh---hhHHHHHHHHHHHCCC--cccccCCCCCChHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS---DNINMIKLWIMEGVRH--GELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~---~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGqkQRvaI 213 (397)
+..|+||||...+|+ .+||.||+.++.... .......+++.+.|-- +..+.+..+|||||||.+||
T Consensus 71 p~~~r~r~Gi~~VPegR~iF~---~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 71 PPHERARLGIAYVPEGRRIFP---RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred CHHHHHhCCeEeCcccccchh---hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 468999999999998 799999999886521 1222226778888864 44566788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| .+|-+..-+ +..+.+.++ ..+.|.||++|.++ .+.++|||.+
T Consensus 148 aRALm~~PklL--------LLDEPs--~GLaP~iv~--~I~~~i~~l------~~~~g~tIlLVEQn~~~Al~iaDr~y- 208 (237)
T COG0410 148 ARALMSRPKLL--------LLDEPS--EGLAPKIVE--EIFEAIKEL------RKEGGMTILLVEQNARFALEIADRGY- 208 (237)
T ss_pred HHHHhcCCCEE--------EecCCc--cCcCHHHHH--HHHHHHHHH------HHcCCcEEEEEeccHHHHHHhhCEEE-
Confidence 99999999999 666666 555543322 233333332 23458899999994 9999999996
Q ss_pred EeeCCEEeeeCCcccccCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~ 312 (397)
+|.+|+|+..|+.+++..+|.
T Consensus 209 vle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 209 VLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEeCCEEEEecCHHHHhcCHH
Confidence 599999999999999987653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=365.50 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=182.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhcccccccc-C-------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT-R-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~v 106 (397)
.....++..++.++.+.+|+.++++.+++... . ...-++++||++.|.+++++ |+|+||+|++|+++
T Consensus 305 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~v-----L~~i~l~i~~G~~v 379 (588)
T PRK11174 305 RDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTL-----AGPLNFTLPAGQRI 379 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCee-----eeeeEEEEcCCCEE
Confidence 34445566777788889999999986543211 0 11249999999877544445 99999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
||+||||||||||+++|+|+++ ++|+|.+||. ++.|+||+|++.+|+ -|++||+.++...
T Consensus 380 aIvG~SGsGKSTL~~lL~g~~p------~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~----~TI~eNI~~g~~~ 449 (588)
T PRK11174 380 ALVGPSGAGKTSLLNALLGFLP------YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH----GTLRDNVLLGNPD 449 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCCC------CCcEEEECCEecccCCHHHHHhheEEecCCCcCCC----cCHHHHhhcCCCC
Confidence 9999999999999999999984 5899999997 468999999999997 5999999998531
Q ss_pred hhhHHHHHHHHHHHCCC-----------c-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 177 SDNINMIKLWIMEGVRH-----------G-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl-----------~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
.. ++.+.++++..++ + ....+...||||||||++|||||+++|++| +||||| ++||
T Consensus 450 ~~--~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il--------iLDE~T--SaLD 517 (588)
T PRK11174 450 AS--DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL--------LLDEPT--ASLD 517 (588)
T ss_pred CC--HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--cCCC
Confidence 11 1222333333333 1 123446678999999999999999999999 666667 8888
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
..++. ...+.+.++ .+++|+|+|||+ ...+.||+| ++|++|++++.|++++++..
T Consensus 518 ~~te~--~i~~~l~~~--------~~~~TvIiItHrl~~i~~aD~I-ivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 518 AHSEQ--LVMQALNAA--------SRRQTTLMVTHQLEDLAQWDQI-WVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHH--HHHHHHHHH--------hCCCEEEEEecChHHHHhCCEE-EEEeCCeEeecCCHHHHHhc
Confidence 66655 233333332 468999999996 777889999 57999999999999998754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=324.62 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=162.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
|+++||+++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 69 (222)
T cd03224 1 LEVENLNAGYGK-SQI-----LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLPP 69 (222)
T ss_pred CEEeeEEeecCC-eeE-----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCCCCH
Confidence 578999999963 334 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHC-CCc-ccccCCCCCChHHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGV-RHG-ELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~v-gl~-~~~~~~~~lSGGqkQRvaIArA 216 (397)
++.++|+||++.+++ .+|+.||+.++... ..+....+.++++.+ ++. ....++.+||||||||++||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 70 HERARAGIGYVPEGRRIFP---ELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HHHHhcCeEEeccccccCC---CCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 235999999998776 68999999876431 223344566778887 463 3466788999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++..+||++ ++|+
T Consensus 147 l~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~~~d~i-~~l~ 206 (222)
T cd03224 147 LMSRPKLL--------LLDEPS--EGLAPKIVE--EIFEAIREL-------RDEGVTILLVEQNARFALEIADRA-YVLE 206 (222)
T ss_pred HhcCCCEE--------EECCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhccEE-EEee
Confidence 99999999 555555 677755443 334444433 1368999999995 778999999 5799
Q ss_pred CCEEeeeCCccccc
Q 015952 295 LGELLGIPPAKQIF 308 (397)
Q Consensus 295 ~G~iv~~g~~~el~ 308 (397)
+|++++.|++++++
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999998877664
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=363.05 Aligned_cols=258 Identities=13% Similarity=0.150 Sum_probs=194.6
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH-----------HHHH---------------------HHHhcc---------
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR-----------DAVF---------------------REVLQS--------- 60 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---------------------~~~~~~--------- 60 (397)
+==|||||++||+.....+++.+.+.++. .+.+ .++++.
T Consensus 177 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 256 (529)
T PRK15134 177 LLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKL 256 (529)
T ss_pred EEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCCCCHHHHHH
Confidence 33489999999999999999888876432 1111 111110
Q ss_pred ---ccccc-----cCCCCeEEEEeEEEEECC----------CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHH
Q 015952 61 ---YDQLR-----TRIGSLTDAKNKILSYTP----------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 122 (397)
Q Consensus 61 ---~~~~~-----~~~~~~lel~nvs~~Y~~----------~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~ 122 (397)
.+... ....++++++|++++|+. +..+ |+++||+|++||+++|+||||||||||+|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~ 331 (529)
T PRK15134 257 LNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVV-----VKNISFTLRPGETLGLVGESGSGKSTTGLA 331 (529)
T ss_pred HHhCccccccccCCCCCCcccccCcEEEeecCcccccccccccee-----eecceeEEcCCCEEEEECCCCCCHHHHHHH
Confidence 00000 012358999999999952 1224 999999999999999999999999999999
Q ss_pred HHcccCCCCCCCcccEEEECce-------------eCcEEEEecCCC--CCCCCCCccHHHHHhcCCC------ChhhHH
Q 015952 123 ISKVFENDKFASERAQVTYNSS-------------VGDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD------ASDNIN 181 (397)
Q Consensus 123 I~Gl~~~~~~~p~~G~I~i~G~-------------~~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~------~~~~~~ 181 (397)
|+|+++ ++|+|.++|+ ++++||+||++. +++ .+||.||+.++.. ...+.+
T Consensus 332 l~Gl~~------~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~ 402 (529)
T PRK15134 332 LLRLIN------SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP---RLNVLQIIEEGLRVHQPTLSAAQRE 402 (529)
T ss_pred HhCcCC------CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC---cccHHHHHHHHHHhccccCChHHHH
Confidence 999964 6899999995 135999999973 554 5899999987531 123345
Q ss_pred HHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHH
Q 015952 182 MIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 259 (397)
Q Consensus 182 ~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~ 259 (397)
+++.++++.+++. . ..+++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.+
T Consensus 403 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~ 470 (529)
T PRK15134 403 QQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLI--------ILDEPT--SSLDKTVQA--QILALLKS 470 (529)
T ss_pred HHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEE--------EeeCCc--cccCHHHHH--HHHHHHHH
Confidence 6788899999995 3 46778999999999999999999999999 555556 777755444 33444443
Q ss_pred hcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 260 TFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 260 l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+. .+.|+|||+|||| ++..+|||+ ++|++|++++.|++++++..|.
T Consensus 471 ~~------~~~~~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 471 LQ------QKHQLAYLFISHDLHVVRALCHQV-IVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred HH------HhhCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEEEcCHHHHhcCCC
Confidence 31 1248999999995 788999999 5799999999999999987654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=342.01 Aligned_cols=214 Identities=16% Similarity=0.202 Sum_probs=170.8
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
..++|+++|++++|+.+.. ....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~~ 91 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYIG 91 (320)
T ss_pred CCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEcc
Confidence 4578999999999964210 00012999999999999999999999999999999999999 99999999974
Q ss_pred -----------------------eCcEEEEecCC--CCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-
Q 015952 145 -----------------------VGDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG- 194 (397)
Q Consensus 145 -----------------------~~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~- 194 (397)
++.+|||||++ .++. .|+.||+.++.. ..++...++.++++.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 92 DKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK----DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred cccccccccccccccccchHHHHHhcEEEEEECchhcccc----chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 13589999997 3453 599999988642 2344556788899999994
Q ss_pred c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 195 E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 195 ~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
. ...++.+||||||||++|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL--------LLDEPt--sgLD~~~~~--~l~~~L~~l-------~~~g~T 228 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEIL--------IFDEPT--AGLDPKGEH--EMMQLILDA-------KANNKT 228 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH-------HHCCCE
Confidence 3 56778999999999999999999999999 555556 777755443 333444333 135899
Q ss_pred EEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 274 VVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 274 VIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
||+|||+ ++.++|||| ++|++|++++.|++++++..+
T Consensus 229 iiivtHd~~~~~~~adri-~vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 229 VFVITHTMEHVLEVADEV-IVMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEecCHHHHHHhCCEE-EEEECCEEEEeCCHHHHhcCH
Confidence 9999995 678999999 579999999999999987654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=327.39 Aligned_cols=208 Identities=15% Similarity=0.215 Sum_probs=169.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~-~~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 69 (240)
T PRK09493 1 MIEFKNVSKHFGP-TQV-----LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDPK 69 (240)
T ss_pred CEEEEeEEEEECC-eEE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCC
Confidence 5889999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
+.++|++|++.++. .+|+.+|+.++.. ......+.+.++++.+++. ....++.+||||||||++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 146 (240)
T PRK09493 70 VDERLIRQEAGMVFQQFYLFP---HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVA 146 (240)
T ss_pred hhHHHHhhceEEEecccccCC---CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHH
Confidence 35899999987775 5899999987531 2233456678899999994 456778899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|+++ +||||| ++||..... ...+.+.++ .++|+|||++||+ ++..+|||+
T Consensus 147 la~al~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~~~d~i- 206 (240)
T PRK09493 147 IARALAVKPKLM--------LFDEPT--SALDPELRH--EVLKVMQDL-------AEEGMTMVIVTHEIGFAEKVASRL- 206 (240)
T ss_pred HHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEE-
Confidence 999999999999 555555 777755443 233444332 1358999999995 778899999
Q ss_pred EEeeCCEEeeeCCcccccCCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|++++.|+++++...+.
T Consensus 207 ~~l~~G~i~~~g~~~~~~~~~~ 228 (240)
T PRK09493 207 IFIDKGRIAEDGDPQVLIKNPP 228 (240)
T ss_pred EEEECCEEEeeCCHHHHhcCCc
Confidence 5699999999999988766543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=324.29 Aligned_cols=200 Identities=20% Similarity=0.264 Sum_probs=161.1
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc-----CCCCCCCcccEEEECcee-
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~-----~~~~~~p~~G~I~i~G~~- 145 (397)
|+++||+++|+. ..+ |+|+||+|++||+++|+||||||||||+|+|+|++ + |++|+|.++|..
T Consensus 1 i~~~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGD-KHA-----LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCC-cee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 578999999964 335 99999999999999999999999999999999999 8 999999999962
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCccc-ccC--CCCCChH
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGEL-VIR--RSDSSSL 206 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~~-~~~--~~~lSGG 206 (397)
+.+||+||++.++. +|+.||+.++.. ......+++.++++.+++... ..+ +.+||||
T Consensus 70 ~~~~~~~~~~~~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 145 (227)
T cd03260 70 YDLDVDVLELRRRVGMVFQKPNPFP----GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGG 145 (227)
T ss_pred hhcchHHHHHHhhEEEEecCchhcc----ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHH
Confidence 35999999987763 799999987532 112245677889999999543 444 4899999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++ +|||++||+ ++..
T Consensus 146 ~~qrv~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 146 QQQRLCLARALANEPEVL--------LLDEPT--SALDPISTA--KIEELIAEL-------KKE-YTIVIVTHNMQQAAR 205 (227)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------hhC-cEEEEEeccHHHHHH
Confidence 999999999999999999 555556 777755443 334444433 134 899999995 7788
Q ss_pred cccEEEEEeeCCEEeeeCCcccc
Q 015952 285 LTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+|||+ ++|++|++++.|+++++
T Consensus 206 ~~d~i-~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 206 VADRT-AFLLNGRLVEFGPTEQI 227 (227)
T ss_pred hCCEE-EEEeCCEEEEecCcccC
Confidence 99999 56999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=324.76 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=161.4
Q ss_pred CeEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
++++++||+++|+.+ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i 73 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV-----LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPM 73 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEc
Confidence 589999999999642 224 999999999999999999999999999999999999 999999999962
Q ss_pred -------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHH
Q 015952 146 -------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLR 207 (397)
Q Consensus 146 -------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGq 207 (397)
+.++|+||++.+++ .+|+.||+.+... .....++++.++++.+++.+ ...++.+|||||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 150 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLP---DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGE 150 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 35999999988776 5799999987421 23344567889999999954 466788999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
|||++|||||+.+|++| +||||| ++||+.... ...+.+.++. .++|+|||++||+ ++..
T Consensus 151 ~qrl~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tvii~sH~~~~~~~- 211 (233)
T PRK11629 151 RQRVAIARALVNNPRLV--------LADEPT--GNLDARNAD--SIFQLLGELN------RLQGTAFLVVTHDLQLAKR- 211 (233)
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHh-
Confidence 99999999999999999 555555 777754433 2334443321 1358999999995 5554
Q ss_pred ccEEEEEeeCCEEeeeCCc
Q 015952 286 TDRARIRTYLGELLGIPPA 304 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~ 304 (397)
+|++ ++|++|++++.++.
T Consensus 212 ~~~~-~~l~~G~i~~~~~~ 229 (233)
T PRK11629 212 MSRQ-LEMRDGRLTAELSL 229 (233)
T ss_pred hCEE-EEEECCEEEEEecc
Confidence 5788 56999999987764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=328.03 Aligned_cols=208 Identities=18% Similarity=0.229 Sum_probs=167.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++||+++|++...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRYGGGKKA-----VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEeCCcceE-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcCcCCh
Confidence 4789999999642335 999999999999999999999999999999999999 999999999962
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc---ccccCCCCCChHHHHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG---ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~---~~~~~~~~lSGGqkQRvaIA 214 (397)
..++|+||++.+++ .+|+.||+.++.. ......+.+.++++.+++. ....++.+||||||||++||
T Consensus 71 ~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 71 VELRRKIGYVIQQIGLFP---HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred HHhhcceEEEccCccccC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 46899999988775 5899999987532 2233456678899999995 34667889999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+||++ ++
T Consensus 148 ral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~L~~~~------~~~g~tvii~sH~~~~~~~~~d~i-~~ 208 (242)
T cd03295 148 RALAADPPLL--------LMDEPF--GALDPITRD--QLQEEFKRLQ------QELGKTIVFVTHDIDEAFRLADRI-AI 208 (242)
T ss_pred HHHhcCCCEE--------EecCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEecCHHHHHHhCCEE-EE
Confidence 9999999999 555555 777754433 2334443331 1248999999995 688999999 57
Q ss_pred eeCCEEeeeCCcccccCCC
Q 015952 293 TYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~ 311 (397)
|++|++++.|+++++...+
T Consensus 209 l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 209 MKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred EECCEEEEecCHHHHHcCC
Confidence 9999999999988876543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=316.70 Aligned_cols=206 Identities=15% Similarity=0.173 Sum_probs=172.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
|+++.+.+++.+|.. .+..+ |+|+|++|.+||+++++||||||||||+|+++|+.. |+.|+|.+||++
T Consensus 1 M~~l~~~~~sl~y~g-~~~~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g 71 (259)
T COG4525 1 MCMLNVSHLSLSYEG-KPRSA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG 71 (259)
T ss_pred CceeehhheEEecCC-cchhh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC
Confidence 568889999999963 32223 999999999999999999999999999999999999 999999999983
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
..-|+|||++.+++ ++++.||++|++. .+.+..+.+.+++..||| +..++++.+|||||||||.|||||+
T Consensus 72 PgaergvVFQ~~~LlP---Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa 148 (259)
T COG4525 72 PGAERGVVFQNEALLP---WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA 148 (259)
T ss_pred CCccceeEeccCccch---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh
Confidence 45699999999877 7999999999977 577788899999999999 4457889999999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee--
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY-- 294 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~-- 294 (397)
.+|++|+|||| |++||..+.+.+ ...+.++ ....|+.+++|||+ ++.-+|+|+ |+|.
T Consensus 149 ~eP~~LlLDEP----------fgAlDa~tRe~m--QelLldl------w~~tgk~~lliTH~ieEAlflatrL-vvlsp~ 209 (259)
T COG4525 149 VEPQLLLLDEP----------FGALDALTREQM--QELLLDL------WQETGKQVLLITHDIEEALFLATRL-VVLSPG 209 (259)
T ss_pred cCcceEeecCc----------hhhHHHHHHHHH--HHHHHHH------HHHhCCeEEEEeccHHHHHhhhhee-EEecCC
Confidence 99999977777 477776666522 2222222 23579999999994 999999999 5687
Q ss_pred CCEEeeeCCcc
Q 015952 295 LGELLGIPPAK 305 (397)
Q Consensus 295 ~G~iv~~g~~~ 305 (397)
.|+|++.-+++
T Consensus 210 pgRvv~~~~~d 220 (259)
T COG4525 210 PGRVVERLPLD 220 (259)
T ss_pred CceeeEecCCC
Confidence 57888765553
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=321.15 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=160.2
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 i~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~~~~ 69 (213)
T cd03301 1 VELENVTKRFGN-VTA-----LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTDLPP 69 (213)
T ss_pred CEEEeeEEEECC-eee-----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCCc
Confidence 478999999964 335 999999999999999999999999999999999999 999999999962
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.++. .+|+.||+.++.. ...+.++.+.++++.+++. ....++.+||||||||++|||||+
T Consensus 70 ~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 70 KDRDIAMVFQNYALYP---HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ccceEEEEecChhhcc---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHh
Confidence 35999999988775 5899999987532 2334456778899999994 456778899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|+++ +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+||++ ++|++|
T Consensus 147 ~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~g 207 (213)
T cd03301 147 REPKVF--------LMDEPL--SNLDAKLRV--QMRAELKRLQ------QRLGTTTIYVTHDQVEAMTMADRI-AVMNDG 207 (213)
T ss_pred cCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHHHHhcCeE-EEEECC
Confidence 999999 555555 677754433 2334443321 1248999999995 788899999 569999
Q ss_pred EEeeeC
Q 015952 297 ELLGIP 302 (397)
Q Consensus 297 ~iv~~g 302 (397)
++++.|
T Consensus 208 ~~~~~g 213 (213)
T cd03301 208 QIQQIG 213 (213)
T ss_pred EEEecC
Confidence 998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=334.40 Aligned_cols=209 Identities=15% Similarity=0.138 Sum_probs=169.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
|.+++++|++++|+.+..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ~~~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 70 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEA-----LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITK 70 (277)
T ss_pred CceEEEEEEEEEeCCCCce-----eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 4679999999999533334 999999999999999999999999999999999999 999999999972
Q ss_pred -------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 146 -------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 -------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+.+||+||++. ++ ..|+.||+.++.. ..+...+++.++++.+++. ....++.+||||||||+
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~----~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl 146 (277)
T PRK13652 71 ENIREVRKFVGLVFQNPDDQIF----SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV 146 (277)
T ss_pred CCHHHHHhheEEEecCcccccc----cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH
Confidence 36999999974 33 3699999986532 2333456778999999994 45777899999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++|||+
T Consensus 147 ~laraL~~~p~ll--------ilDEPt--~gLD~~~~~--~l~~~l~~l~------~~~g~tvli~tH~~~~~~~~~drv 208 (277)
T PRK13652 147 AIAGVIAMEPQVL--------VLDEPT--AGLDPQGVK--ELIDFLNDLP------ETYGMTVIFSTHQLDLVPEMADYI 208 (277)
T ss_pred HHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHHhCCEE
Confidence 9999999999999 555556 777755443 3344444431 1248999999995 777999999
Q ss_pred EEEeeCCEEeeeCCcccccCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~ 310 (397)
++|++|+++..|++++++..
T Consensus 209 -~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 209 -YVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred -EEEECCeEEEECCHHHHhcC
Confidence 56999999999999988754
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=327.67 Aligned_cols=214 Identities=18% Similarity=0.300 Sum_probs=168.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
|++++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 1 ~~~l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 1 MNKIEIRDLKVSFGQ-VEV-----LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred CceEEEEeeEEEECC-eee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 457999999999963 334 99999999999999999999999999999999999721001369999999972
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSLR 207 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGGq 207 (397)
+.+||+||++.++. .+|+.||+.++.. ...+..+.+.++++.+++.. ....+.+|||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIP---NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred CCHHHHhccEEEEeccCccCC---CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 46999999987665 5899999987532 12334456788999999842 356678999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
|||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .+|+|||++||+ ++..+
T Consensus 152 ~qrv~laral~~~p~ll--------lLDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14247 152 QQRLCIARALAFQPEVL--------LADEPT--ANLDPENTA--KIESLFLEL--------KKDMTIVLVTHFPQQAARI 211 (250)
T ss_pred HHHHHHHHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHHh
Confidence 99999999999999999 555555 777755443 233444332 247899999995 67789
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|||+ ++|++|++++.|++++++..+.
T Consensus 212 ~d~i-~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14247 212 SDYV-AFLYKGQIVEWGPTREVFTNPR 237 (250)
T ss_pred cCEE-EEEECCeEEEECCHHHHHcCCc
Confidence 9999 5699999999999998876543
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=335.02 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=168.8
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|+.+..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~~ 73 (283)
T PRK13636 4 YILKVEELNYNYSDGTHA-----LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDYS 73 (283)
T ss_pred ceEEEEeEEEEeCCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCCC
Confidence 489999999999633434 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 146 --------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 --------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
+.+||+||++. ++ ..|++||+.++.. ...+..+++.++++.+++. ....++.+||||||||
T Consensus 74 ~~~~~~~~~~ig~v~q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 149 (283)
T PRK13636 74 RKGLMKLRESVGMVFQDPDNQLF----SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR 149 (283)
T ss_pred cchHHHHHhhEEEEecCcchhhc----cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHH
Confidence 35999999974 33 3699999987532 3334456788999999994 4567788999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+|||
T Consensus 150 l~laraL~~~p~lL--------ilDEPt--~gLD~~~~~--~l~~~l~~l~------~~~g~tillvsH~~~~~~~~~dr 211 (283)
T PRK13636 150 VAIAGVLVMEPKVL--------VLDEPT--AGLDPMGVS--EIMKLLVEMQ------KELGLTIIIATHDIDIVPLYCDN 211 (283)
T ss_pred HHHHHHHHcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEecCHHHHHHhCCE
Confidence 99999999999999 555556 777755443 3344444331 1248999999995 67789999
Q ss_pred EEEEeeCCEEeeeCCcccccCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~ 310 (397)
+ ++|++|++++.|++++++..
T Consensus 212 i-~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 212 V-FVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred E-EEEECCEEEEeCCHHHHhcC
Confidence 9 56999999999999888654
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=320.77 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=154.2
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-------
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------- 145 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------- 145 (397)
+++|++++|+++..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~~~~l~~~~~~~~~~-----l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSYKKGTEI-----LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEeCCcCce-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhhhHHhh
Confidence 478999999642335 999999999999999999999999999999999999 999999999973
Q ss_pred CcEEEEecCCCC-CCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 146 GDGTYFLQEYTI-PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 146 ~~ig~v~Q~~~l-~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
+.+||+||++.. +. ..|+.||+.++..........+.++++.+++. ...+++.+||||||||++|||||+.+|++
T Consensus 71 ~~i~~~~q~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 71 KSIGYVMQDVDYQLF---TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred cceEEEecChhhhhh---hccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 479999999742 22 46999999876432112235678899999994 45677889999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv 299 (397)
| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+||++ ++|++|+++
T Consensus 148 l--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~iv 205 (205)
T cd03226 148 L--------IFDEPT--SGLDYKNME--RVGELIREL-------AAQGKAVIVITHDYEFLAKVCDRV-LLLANGAIV 205 (205)
T ss_pred E--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEC
Confidence 9 555555 777754433 233333332 1358999999995 777899999 569999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=326.76 Aligned_cols=207 Identities=12% Similarity=0.151 Sum_probs=166.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++++++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGK-IQA-----LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCC-cee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 468999999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHC-CCc-ccccCCCCCChHHHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGV-RHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~v-gl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.++|++|++.++. .+|+.+|+.++.. ......+.+.++++.+ ++. ....++.+||||||||++|
T Consensus 72 ~~~~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~l 148 (237)
T PRK11614 72 WQTAKIMREAVAIVPEGRRVFS---RMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAI 148 (237)
T ss_pred CCHHHHHHhCEEEeccCcccCC---CCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHH
Confidence 35999999988776 5799999987532 2223344566777777 463 3456788899999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.++|||+ +
T Consensus 149 a~al~~~p~il--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~~~d~i-~ 208 (237)
T PRK11614 149 GRALMSQPRLL--------LLDEPS--LGLAPIIIQ--QIFDTIEQL-------REQGMTIFLVEQNANQALKLADRG-Y 208 (237)
T ss_pred HHHHHhCCCEE--------EEcCcc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCcHHHHHhhCCEE-E
Confidence 99999999999 555556 777754433 333444333 1358999999995 789999999 5
Q ss_pred EeeCCEEeeeCCcccccC
Q 015952 292 RTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~ 309 (397)
+|++|+++..|++++++.
T Consensus 209 ~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 209 VLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEeCCEEEeeCCHHHHhc
Confidence 699999999999988864
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=326.44 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=168.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ~~~l~~~~l~~~~~~-~~~-----l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 69 (241)
T PRK10895 1 MATLTAKNLAKAYKG-RRV-----VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISL 69 (241)
T ss_pred CceEEEeCcEEEeCC-EEE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 358999999999963 334 999999999999999999999999999999999999 99999999995
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMR 211 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRv 211 (397)
++.++|+||++.++. .+|+.||+.+... ...+.+..+.++++.+++.. ...++.+|||||+||+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 146 (241)
T PRK10895 70 LPLHARARRGIGYLPQEASIFR---RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRV 146 (241)
T ss_pred CCHHHHHHhCeEEeccCCcccc---cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHH
Confidence 246999999988776 5899999987532 12334566788999999943 4666889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++..+||++
T Consensus 147 ~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tiii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 147 EIARALAANPKFI--------LLDEPF--AGVDPISVI--DIKRIIEHL-------RDSGLGVLITDHNVRETLAVCERA 207 (241)
T ss_pred HHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEEcCHHHHHHhcCEE
Confidence 9999999999999 555556 777754433 223333332 2358999999995 788999999
Q ss_pred EEEeeCCEEeeeCCcccccC
Q 015952 290 RIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|++++.|++++++.
T Consensus 208 -~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 208 -YIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred -EEEeCCeEEeeCCHHHHhc
Confidence 5799999999999888764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=358.07 Aligned_cols=222 Identities=15% Similarity=0.202 Sum_probs=177.7
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
++|+++|+++.|.... ..+.+++||||+|.+||++||||+|||||||+.++|.|+++.+. ...+|+|.++|.
T Consensus 4 ~lL~V~nL~v~~~~~~--~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDG--GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCC--cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhcC
Confidence 4899999999996432 12334999999999999999999999999999999999999331 234899999996
Q ss_pred ---------eCcEEEEecCCCC-CCCCCCccHHHHHhc----CCC-ChhhHHHHHHHHHHHCCCcc-cc--cCCCCCChH
Q 015952 145 ---------VGDGTYFLQEYTI-PRGSNSFSLYDTRSL----SDD-ASDNINMIKLWIMEGVRHGE-LV--IRRSDSSSL 206 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l-~~~~~~ltv~eni~~----~~~-~~~~~~~~~~~ll~~vgl~~-~~--~~~~~lSGG 206 (397)
.+.|+|+||+|.- ++ +-+|+.+-+.- ... ..++.++++.++|+.+++.+ .. .+|++||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~sln--P~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG 158 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLN--PVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGG 158 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcC--chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCch
Confidence 2689999999743 22 23566655543 221 36778889999999999943 33 489999999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|||||.||+||+++|++| ++|||| .+||...+. +.++.++++ +.+.|+++|+|||| .+.+
T Consensus 159 ~rQRv~iAmALa~~P~LL--------IaDEPT--TaLDvt~q~--qIL~llk~l------~~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 159 MRQRVMIAMALALKPKLL--------IADEPT--TALDVTTQA--QILDLLKDL------QRELGMAVLFITHDLGVVAE 220 (539)
T ss_pred HHHHHHHHHHHhCCCCEE--------EECCCc--cccCHHHHH--HHHHHHHHH------HHHcCcEEEEEcCCHHHHHH
Confidence 999999999999999999 555556 666655444 456666554 24689999999997 8899
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~ 315 (397)
+|||| ++|++|++++.|++++++.+|.++.
T Consensus 221 ~aDrv-~Vm~~G~iVE~G~~~~i~~~p~hpY 250 (539)
T COG1123 221 LADRV-VVMYKGEIVETGPTEEILSNPQHPY 250 (539)
T ss_pred hcCeE-EEEECCEEEEecCHHHHHhccCCcc
Confidence 99999 5799999999999999999998753
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=336.36 Aligned_cols=207 Identities=15% Similarity=0.215 Sum_probs=167.6
Q ss_pred eEEEEeEEEEECCCc----eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~----~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
.++++||+++|+.+. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQA-----IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCCccccCc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEC
Confidence 389999999996321 24 999999999999999999999999999999999999 999999999952
Q ss_pred -------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-c-cccCCCCCC
Q 015952 146 -------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-E-LVIRRSDSS 204 (397)
Q Consensus 146 -------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lS 204 (397)
+.|||+||++. ++. .|+.||+.++.. ...+..+++.++++.+|+. . ....+.+||
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~----~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE----DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch----hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 36899999973 443 599999988632 3344566788999999995 4 456789999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||+ ++
T Consensus 148 gGq~qrv~laraL~~~p~il--------llDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tvl~vtH~~~~~ 209 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDII--------VLDEPT--AGLDPQSKR--QVMRLLKSLQ------TDENKTIILVSHDMNEV 209 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEecCHHHH
Confidence 99999999999999999999 555555 777755443 2334443331 2358999999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
..+|||| ++|++|++++.|++++++..
T Consensus 210 ~~~~dri-~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 210 ARYADEV-IVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHhCCEE-EEEECCEEEEECCHHHHHhC
Confidence 8899999 56999999999999888764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=329.10 Aligned_cols=202 Identities=13% Similarity=0.171 Sum_probs=165.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 10 ~~~l~i~~l~~~~~~-~~i-----l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 78 (257)
T PRK11247 10 GTPLLLNAVSKRYGE-RTV-----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLAE 78 (257)
T ss_pred CCcEEEEEEEEEECC-cce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHHH
Confidence 468999999999964 335 999999999999999999999999999999999999 99999999986
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCC
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
++.++|+||++.+++ .+|+.||+.++... .....+.++++.+++. ...+++.+||||||||++|||||+.+|+
T Consensus 79 ~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 79 AREDTRLMFQDARLLP---WKKVIDNVGLGLKG--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred hhCceEEEecCccCCC---CCcHHHHHHhcccc--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 357999999988775 57999999876432 2245677899999994 4567789999999999999999999999
Q ss_pred eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEee
Q 015952 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 223 iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~ 300 (397)
+| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+||++ ++|++|+++.
T Consensus 154 ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~~------~~~~~tviivsHd~~~~~~~~d~i-~~l~~G~i~~ 214 (257)
T PRK11247 154 LL--------LLDEPL--GALDALTRI--EMQDLIESLW------QQHGFTVLLVTHDVSEAVAMADRV-LLIEEGKIGL 214 (257)
T ss_pred EE--------EEeCCC--CCCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 99 555555 777754433 2334443321 2358999999995 678999999 5799999999
Q ss_pred eCCcc
Q 015952 301 IPPAK 305 (397)
Q Consensus 301 ~g~~~ 305 (397)
+++.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=328.31 Aligned_cols=210 Identities=15% Similarity=0.154 Sum_probs=170.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+++++||++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~~l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGE-HEV-----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 357999999999963 334 999999999999999999999999999999999999 999999999952
Q ss_pred --------------------CcEEEEecCCCCCCCCCCccHHHHHhcCC-----CChhhHHHHHHHHHHHCCCccc--cc
Q 015952 146 --------------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD-----DASDNINMIKLWIMEGVRHGEL--VI 198 (397)
Q Consensus 146 --------------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~-----~~~~~~~~~~~~ll~~vgl~~~--~~ 198 (397)
+.++|+||++.++. .+|+.||+.++. ......++++.++++.+++... .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~---~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS---HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCC---CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 35899999998876 589999997632 1233445678889999999543 56
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
++.+||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||+||
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~l-------~~~g~tiiivs 209 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAMEPEVL--------LFDEPT--SALDPELVG--EVLRIMQQL-------AEEGKTMVVVT 209 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEe
Confidence 78899999999999999999999999 555556 777755443 233444333 13589999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|+ ++..+|||+ ++|++|++++.|++++++..+.
T Consensus 210 H~~~~~~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 210 HEMGFARHVSSHV-IFLHQGKIEEEGAPEQLFGNPQ 244 (257)
T ss_pred CCHHHHHHhcCEE-EEEECCEEEEeCCHHHhhhCcc
Confidence 95 777899999 5699999999999988876543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=320.63 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=159.0
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 69 (208)
T cd03268 1 LKTNDLTKTYGK-KRV-----LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQKNIE 69 (208)
T ss_pred CEEEEEEEEECC-eEe-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccchHH
Confidence 478999999953 335 999999999999999999999999999999999999 999999999962
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
+.++|+||++.+++ .+|+.||+.++........+++.++++.+++.+ ...++.+|||||||||+|||||+.+|+
T Consensus 70 ~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 70 ALRRIGALIEAPGFYP---NLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred HHhhEEEecCCCccCc---cCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 46999999988775 689999998754211112456788999999944 566788999999999999999999999
Q ss_pred eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEee
Q 015952 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 223 iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~ 300 (397)
+| +||||| ++||..... ...+.+.++ .++|+|+|++||+ ++..+||++ ++|++|++++
T Consensus 147 ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~tH~~~~~~~~~d~v-~~l~~g~i~~ 206 (208)
T cd03268 147 LL--------ILDEPT--NGLDPDGIK--ELRELILSL-------RDQGITVLISSHLLSEIQKVADRI-GIINKGKLIE 206 (208)
T ss_pred EE--------EECCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEcCCHHHHHHhcCEE-EEEECCEEEe
Confidence 99 555556 777755443 233444332 1358999999995 677899999 5699999987
Q ss_pred eC
Q 015952 301 IP 302 (397)
Q Consensus 301 ~g 302 (397)
.|
T Consensus 207 ~g 208 (208)
T cd03268 207 EG 208 (208)
T ss_pred cC
Confidence 54
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=338.08 Aligned_cols=205 Identities=13% Similarity=0.160 Sum_probs=169.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++|+|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~-~~~-----l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~~~ 70 (301)
T TIGR03522 2 SIRVSSLTKLYGT-QNA-----LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQNP 70 (301)
T ss_pred EEEEEEEEEEECC-EEE-----EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCh
Confidence 4899999999963 334 999999999999999999999999999999999999 999999999972
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArA 216 (397)
+.+||+||++.+++ .+|+.||+.+... ..++..+++.++++.+++.+ ..+++..||||||||++||||
T Consensus 71 ~~~~~~ig~~~q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 71 KEVQRNIGYLPEHNPLYL---DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred HHHHhceEEecCCCCCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 46999999998876 6899999976432 23444567889999999954 567788999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|+.+|++| +||||| ++||+.... ...+.+.++ .+++|||++||+ ++.++|||| ++|+
T Consensus 148 l~~~p~ll--------iLDEPt--~gLD~~~~~--~l~~~l~~~--------~~~~tiii~sH~l~~~~~~~d~i-~~l~ 206 (301)
T TIGR03522 148 LIHDPKVL--------ILDEPT--TGLDPNQLV--EIRNVIKNI--------GKDKTIILSTHIMQEVEAICDRV-IIIN 206 (301)
T ss_pred HhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEcCCHHHHHHhCCEE-EEEE
Confidence 99999999 555556 777755443 233333332 347999999994 789999999 5699
Q ss_pred CCEEeeeCCcccccCC
Q 015952 295 LGELLGIPPAKQIFDI 310 (397)
Q Consensus 295 ~G~iv~~g~~~el~~~ 310 (397)
+|+++..|+++++...
T Consensus 207 ~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 207 KGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEeCCHHHHHHh
Confidence 9999999999987543
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=364.66 Aligned_cols=238 Identities=15% Similarity=0.188 Sum_probs=186.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC-----CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEEC
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
.....+..+++.+.+.+|+.++++.+++.... ....++++|++|+|+++.++ |+|+||+|++||.++|+|
T Consensus 300 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~i-----l~~i~l~i~~Ge~iaIvG 374 (592)
T PRK10790 300 ELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLV-----LQNINLSVPSRGFVALVG 374 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCce-----eeceeEEEcCCCEEEEEC
Confidence 44455667777888899999999865432211 12359999999999744435 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
+||||||||+|+|+|+++ |++|+|.+||. ++.|+||+|++.+|+ -|++||+.++... .
T Consensus 375 ~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~----~Ti~~NI~~~~~~---~ 442 (592)
T PRK10790 375 HTGSGKSTLASLLMGYYP-----LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA----DTFLANVTLGRDI---S 442 (592)
T ss_pred CCCCCHHHHHHHHhcccC-----CCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc----chHHHHHHhCCCC---C
Confidence 999999999999999999 99999999997 478999999999997 5999999998531 1
Q ss_pred HHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 181 NMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
.+.+.++++.+|+.+ .......+|||||||++|||||+++|++| +||||| ++||+.++
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il--------llDEpt--s~LD~~t~ 512 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL--------ILDEAT--ANIDSGTE 512 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE--------EEeCCc--ccCCHHHH
Confidence 234556666666532 12235568999999999999999999999 555556 77776554
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
. ...+.+.+. .+++|+|+|||+ .....||+| ++|++|++++.|+++++++..
T Consensus 513 ~--~i~~~l~~~--------~~~~tvIivtHr~~~l~~~D~i-i~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 513 Q--AIQQALAAV--------REHTTLVVIAHRLSTIVEADTI-LVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred H--HHHHHHHHH--------hCCCEEEEEecchHHHHhCCEE-EEEECCEEEEEcCHHHHHhCC
Confidence 4 233344332 357999999996 777789999 579999999999999998653
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=326.97 Aligned_cols=206 Identities=21% Similarity=0.320 Sum_probs=167.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-----ccEEEECcee
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-----~G~I~i~G~~ 145 (397)
+++++||+++|+. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGE-KEA-----LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECC-eee-----ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 5889999999963 334 999999999999999999999999999999999999 88 9999999962
Q ss_pred ------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc----c-cccCCCCC
Q 015952 146 ------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG----E-LVIRRSDS 203 (397)
Q Consensus 146 ------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~----~-~~~~~~~l 203 (397)
+.++|+||++.++. .|++||+.++.. ......+.+.++++.+++. . ...++.+|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 145 (247)
T TIGR00972 70 IYDKKIDVVELRRRVGMVFQKPNPFP----MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGL 145 (247)
T ss_pred ccccccchHHHHhheEEEecCcccCC----CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccC
Confidence 35999999987764 799999987532 1234456778899999995 3 35668899
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--h
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--D 281 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~ 281 (397)
|||||||++|||||+.+|+++ +||||| ++||+.... ...+.+.++ .+++|||++||+ +
T Consensus 146 SgG~~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiiivsH~~~~ 205 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVL--------LLDEPT--SALDPIATG--KIEELIQEL--------KKKYTIVIVTHNMQQ 205 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------HhcCeEEEEecCHHH
Confidence 999999999999999999999 555556 777755443 334444433 234899999995 6
Q ss_pred HHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 282 ~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+..+|||+ ++|++|+++..|++++++..+.
T Consensus 206 ~~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 235 (247)
T TIGR00972 206 AARISDRT-AFFYDGELVEYGPTEQIFTNPK 235 (247)
T ss_pred HHHhCCEE-EEEECCEEEEeCCHHHHHhCCC
Confidence 78999999 5799999999999998876554
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=333.13 Aligned_cols=207 Identities=15% Similarity=0.159 Sum_probs=166.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|+.+..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 1 MIRLENVSYSYPDGTPA-----LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGDFS 70 (274)
T ss_pred CEEEEEEEEEcCCCCce-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCccc
Confidence 58999999999533334 999999999999999999999999999999999999 999999999972
Q ss_pred ------CcEEEEecCCCC-CCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 146 ------GDGTYFLQEYTI-PRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 ------~~ig~v~Q~~~l-~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
+.+||+||++.. +. ..|++||+.++.. ......+.+.++++.+++.. ....+..||||||||++|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 71 KLQGIRKLVGIVFQNPETQFV---GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred cHHHHHhheEEEEEChhhhcc---cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHH
Confidence 359999999753 32 4799999987532 23344567888999999944 466788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+ ..|||+ +
T Consensus 148 aral~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~l~~l-------~~~g~til~~tH~~~~~-~~~d~v-~ 206 (274)
T PRK13644 148 AGILTMEPECL--------IFDEVT--SMLDPDSGI--AVLERIKKL-------HEKGKTIVYITHNLEEL-HDADRI-I 206 (274)
T ss_pred HHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCHHHH-hhCCEE-E
Confidence 99999999999 555555 677754433 233444333 1358999999995 55 679999 5
Q ss_pred EeeCCEEeeeCCcccccCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~ 311 (397)
+|++|+++..|++++++..+
T Consensus 207 ~l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 207 VMDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred EEECCEEEEECCHHHHhcCh
Confidence 79999999999998887653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=344.13 Aligned_cols=205 Identities=14% Similarity=0.174 Sum_probs=169.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||++ ||+|+|++ . . + |+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 1 ~l~~-~l~k~~~~-~-~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGD-L-C-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCC-E-E-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 5788 99999952 2 2 4 8999999999999999999999999999999999 99999999985
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.+||+||++.+++ ++|+.||+.++... ...+.+.++++.+++. ...+++.+|||||||||+|||
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFP---HYKVRGNLRYGMAK--SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred cccccchhhCCEEEEcCCcccCC---CCcHHHHHHhhhhh--hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 246999999998886 78999999887532 2345678899999994 456788999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|+|+|||+ ++..+|||+ ++|
T Consensus 142 aL~~~p~ll--------LLDEPt--s~LD~~~~~--~l~~~L~~l~------~~~g~tii~vTHd~~~~~~~~d~i-~~l 202 (352)
T PRK11144 142 ALLTAPELL--------LMDEPL--ASLDLPRKR--ELLPYLERLA------REINIPILYVSHSLDEILRLADRV-VVL 202 (352)
T ss_pred HHHcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCeEEEEecCHHHHHHhCCEE-EEE
Confidence 999999999 555555 777755443 3344444431 2348999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|+++..|++++++..|..
T Consensus 203 ~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 203 EQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred eCCEEEEecCHHHHHhCcch
Confidence 99999999999999988763
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=364.05 Aligned_cols=240 Identities=9% Similarity=0.121 Sum_probs=186.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....+..++..+.+.+|+.++++.+++.+.. ....++++||+|+|+++ .++ |+|+||+|++|+.++|
T Consensus 300 ~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i-----l~~i~l~i~~G~~~aI 374 (582)
T PRK11176 300 SLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA-----LRNINFKIPAGKTVAL 374 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCcc-----ccCceEEeCCCCEEEE
Confidence 44456677777888899999998765442211 12359999999999643 335 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+++|+|+++ |++|+|.+||. ++.|+|++|++.+|+ -|++||+.++... +
T Consensus 375 vG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~----~Ti~~Ni~~~~~~-~ 444 (582)
T PRK11176 375 VGRSGSGKSTIANLLTRFYD-----IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN----DTIANNIAYARTE-Q 444 (582)
T ss_pred ECCCCCCHHHHHHHHHhccC-----CCCceEEECCEEhhhcCHHHHHhhceEEccCceeec----chHHHHHhcCCCC-C
Confidence 99999999999999999999 99999999997 368999999999986 6999999997431 1
Q ss_pred hHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
...+.+.++++.+++.+ .......||||||||++|||||+++|++| +||||| ++||+.
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~il--------ilDEpt--saLD~~ 514 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL--------ILDEAT--SALDTE 514 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEE--------EEECcc--ccCCHH
Confidence 11233444555555421 12335668999999999999999999999 666666 777766
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
+.. ...+.+.++ .+++|+|+|||+ ...+.||+| ++|++|++++.|++++++...
T Consensus 515 t~~--~i~~~l~~~--------~~~~tvI~VtHr~~~~~~~D~I-i~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 515 SER--AIQAALDEL--------QKNRTSLVIAHRLSTIEKADEI-LVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHH--HHHHHHHHH--------hCCCEEEEEecchHHHHhCCEE-EEEECCEEEEeCCHHHHHhCC
Confidence 554 233444332 357999999996 778889999 579999999999999987653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=357.72 Aligned_cols=253 Identities=11% Similarity=0.101 Sum_probs=190.3
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhcc------------------------------c
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQS------------------------------Y 61 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------------------------------~ 61 (397)
+==|||||++||++....+++.+.+.+.. ...+.++.+. .
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 243 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRE 243 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHHHHHHhhCcC
Confidence 34589999999999999999988876432 1111111110 0
Q ss_pred cc--cc----cCCCCeEEEEeEEEEECC--CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCC
Q 015952 62 DQ--LR----TRIGSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133 (397)
Q Consensus 62 ~~--~~----~~~~~~lel~nvs~~Y~~--~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~ 133 (397)
.. .+ ....++|+++|++++|+. +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----- 313 (506)
T PRK13549 244 LTALYPREPHTIGEVILEVRNLTAWDPVNPHIKR-----VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP----- 313 (506)
T ss_pred ccccccccccCCCCceEEEecCcccccccccccc-----ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----
Confidence 00 00 012347999999999942 2224 999999999999999999999999999999999998
Q ss_pred C-cccEEEECcee-----------CcEEEEecCCC---CCCCCCCccHHHHHhcCCC---------ChhhHHHHHHHHHH
Q 015952 134 S-ERAQVTYNSSV-----------GDGTYFLQEYT---IPRGSNSFSLYDTRSLSDD---------ASDNINMIKLWIME 189 (397)
Q Consensus 134 p-~~G~I~i~G~~-----------~~ig~v~Q~~~---l~~~~~~ltv~eni~~~~~---------~~~~~~~~~~~ll~ 189 (397)
| ++|+|.++|+. ..+||+||++. +++ .+|+.||+.++.. .....++.+.++++
T Consensus 314 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (506)
T PRK13549 314 GRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP---VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQ 390 (506)
T ss_pred CCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC---CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHH
Confidence 6 89999999862 35999999963 444 5899999986521 11233456888999
Q ss_pred HCCCc--ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc
Q 015952 190 GVRHG--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS 267 (397)
Q Consensus 190 ~vgl~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~ 267 (397)
.+++. ...+++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++
T Consensus 391 ~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l------- 451 (506)
T PRK13549 391 RLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKIL--------ILDEPT--RGIDVGAKY--EIYKLINQL------- 451 (506)
T ss_pred hcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEE--------EEcCCC--CCcCHhHHH--HHHHHHHHH-------
Confidence 99994 356778999999999999999999999999 555556 777755443 233444433
Q ss_pred ccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 268 FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 268 ~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
.++|+|||++||+ ++.++|||+ ++|++|+++..++++++
T Consensus 452 ~~~g~tvi~~sHd~~~~~~~~d~v-~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 452 VQQGVAIIVISSELPEVLGLSDRV-LVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEeccccC
Confidence 1358999999995 788999999 57999999999887654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=319.98 Aligned_cols=194 Identities=17% Similarity=0.193 Sum_probs=156.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|+.+..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~i-----l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAA-----LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLR 70 (214)
T ss_pred CEEEEeeeEEeCCCcee-----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCC
Confidence 58999999999533334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
+.++|++|++.++. .+|+.||+.++.. ......+.+.++++.+++. .....+.+||||||||++
T Consensus 71 ~~~~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 71 GRQLPLLRRRIGVVFQDFRLLP---DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVA 147 (214)
T ss_pred HHHHHHHHhheEEEecChhhcc---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 36999999988775 5899999987532 2233456778899999994 446678899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+||++
T Consensus 148 la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~tH~~~~~~~~~d~i- 207 (214)
T TIGR02673 148 IARAIVNSPPLL--------LADEPT--GNLDPDLSE--RILDLLKRL-------NKRGTTVIVATHDLSLVDRVAHRV- 207 (214)
T ss_pred HHHHHhCCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhcCEE-
Confidence 999999999999 555555 777755443 233444332 1358999999995 788899999
Q ss_pred EEeeCCE
Q 015952 291 IRTYLGE 297 (397)
Q Consensus 291 v~l~~G~ 297 (397)
++|++|+
T Consensus 208 ~~l~~G~ 214 (214)
T TIGR02673 208 IILDDGR 214 (214)
T ss_pred EEecCCC
Confidence 5699884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=324.30 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=165.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~~~ 69 (236)
T TIGR03864 1 ALEVAGLSFAYGA-RRA-----LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRRAP 69 (236)
T ss_pred CEEEEeeEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcccCC
Confidence 5889999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArA 216 (397)
+.++|+||++.++. .+|+.+|+.+... ......+.+.++++.+|+. ....++.+||||||||++||||
T Consensus 70 ~~~~~~i~~~~q~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 70 RAALARLGVVFQQPTLDL---DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred hhhhhhEEEeCCCCCCcc---cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHH
Confidence 46999999987765 5899999977532 1233455678899999994 4567788999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|+.+|+++ +||||| ++||..... ...+.+.++. .++|+|||++||+ ++. .||++ ++|+
T Consensus 147 l~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tiii~sH~~~~~~-~~d~i-~~l~ 206 (236)
T TIGR03864 147 LLHRPALL--------LLDEPT--VGLDPASRA--AIVAHVRALC------RDQGLSVLWATHLVDEIE-ADDRL-VVLH 206 (236)
T ss_pred HhcCCCEE--------EEcCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEecChhhHh-hCCEE-EEEe
Confidence 99999999 555555 777755443 2334443321 1358999999995 554 59999 5699
Q ss_pred CCEEeeeCCcccccCC
Q 015952 295 LGELLGIPPAKQIFDI 310 (397)
Q Consensus 295 ~G~iv~~g~~~el~~~ 310 (397)
+|++++.|+++++...
T Consensus 207 ~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 207 RGRVLADGAAAELRGA 222 (236)
T ss_pred CCeEEEeCCHHHHHHH
Confidence 9999999998877643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=381.16 Aligned_cols=238 Identities=12% Similarity=0.198 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEE
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
++.-.+..++.+..++.+++++++..+.+ -..-++++||+|+|+..+.+.+ |+|+||+|++|+.+|||
T Consensus 946 s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~I---l~~l~l~i~~GqTvALV 1022 (1228)
T KOG0055|consen 946 SYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPV---LNNLSLSIRAGQTVALV 1022 (1228)
T ss_pred hhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchh---hcCCcEEecCCCEEEEE
Confidence 34445666778899999999999865442 1225899999999986554444 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--Ch
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--AS 177 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~ 177 (397)
|||||||||.+.+|-++|. |++|.|.+||. |+++|.|.|+|.||. -|++||+.+|.. +.
T Consensus 1023 G~SGsGKSTvI~LLeRfYd-----p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~----~TIrENI~YG~~~vs~ 1093 (1228)
T KOG0055|consen 1023 GPSGSGKSTVISLLERFYD-----PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN----GTIRENIAYGSEEVSE 1093 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcC-----CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc----ccHHHHHhccCCCCCH
Confidence 9999999999999999999 99999999998 689999999999997 699999999943 22
Q ss_pred hhH---------HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 178 DNI---------NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 178 ~~~---------~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
++. +.++..+.+++.. ..-.+..+||||||||+|||||+++||+|| +|||.| |+||..++
T Consensus 1094 ~eIi~Aak~ANaH~FI~sLP~GyDT-~vGerG~QLSGGQKQRIAIARAilRnPkIL--------LLDEAT--SALDseSE 1162 (1228)
T KOG0055|consen 1094 EEIIEAAKLANAHNFISSLPQGYDT-RVGERGVQLSGGQKQRIAIARAILRNPKIL--------LLDEAT--SALDSESE 1162 (1228)
T ss_pred HHHHHHHHHhhhHHHHhcCcCcccC-ccCcccCcCCchHHHHHHHHHHHHcCCCee--------eeeccc--hhhhhhhH
Confidence 222 2222233333322 123458899999999999999999999999 888888 99998776
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
. .+.+.+ -+...|+|.|+|+|+ ...+.||.|+ ++++|+|+|.|++++++..
T Consensus 1163 r------vVQeAL----d~a~~gRT~IvIAHRLSTIqnaD~I~-Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1163 R------VVQEAL----DRAMEGRTTIVIAHRLSTIQNADVIA-VLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred H------HHHHHH----HHhhcCCcEEEEecchhhhhcCCEEE-EEECCEEEecccHHHHHhC
Confidence 5 222222 113579999999997 8999999995 6999999999999999973
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=320.28 Aligned_cols=194 Identities=19% Similarity=0.244 Sum_probs=155.3
Q ss_pred EEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 72 TDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
|+++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~~~i-----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 70 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA-----LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISK 70 (218)
T ss_pred CeEeeeEEEecCCCcceeE-----EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhh
Confidence 5789999999642 334 999999999999999999999999999999999999 999999999961
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHH
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNR 209 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQ 209 (397)
+.++|+||++.++. .+|+.||+.++.. ......+.+.++++.+++.. ...++.+|||||||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLP---DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQ 147 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCC---CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHH
Confidence 35999999988776 6899999987543 12234456788999999954 46678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
|++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++. +||
T Consensus 148 rv~la~al~~~p~ll--------lLDEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~~-~~d 208 (218)
T cd03255 148 RVAIARALANDPKII--------LADEPT--GNLDSETGK--EVMELLRELN------KEAGTTIVVVTHDPELAE-YAD 208 (218)
T ss_pred HHHHHHHHccCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCeEEEEECCHHHHh-hhc
Confidence 999999999999999 555555 777755443 3334443331 1258999999995 554 999
Q ss_pred EEEEEeeCCEE
Q 015952 288 RARIRTYLGEL 298 (397)
Q Consensus 288 rI~v~l~~G~i 298 (397)
++ ++|++|++
T Consensus 209 ~v-~~l~~G~i 218 (218)
T cd03255 209 RI-IELRDGKI 218 (218)
T ss_pred EE-EEeeCCcC
Confidence 99 56999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=370.20 Aligned_cols=237 Identities=12% Similarity=0.165 Sum_probs=184.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC--------------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYD 99 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~ 99 (397)
......+..++..+.+.+|+.++++.+++.... ....|+++||+|+|++. +++ |+|+||+
T Consensus 427 ~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~v-----L~~isl~ 501 (710)
T TIGR03796 427 NNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL-----IENFSLT 501 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCc-----ccceeEE
Confidence 345556777888888999999999876543211 12358999999999743 334 9999999
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHH
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDT 169 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~en 169 (397)
|++||.+||+||||||||||+|+|+|+++ |++|+|.+||. ++.||||+|++.+|+ -|++||
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~----gTi~eN 572 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE----GTVRDN 572 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh----ccHHHH
Confidence 99999999999999999999999999999 99999999997 478999999999986 699999
Q ss_pred HhcCCCChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchh
Q 015952 170 RSLSDDASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 237 (397)
Q Consensus 170 i~~~~~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEp 237 (397)
+.++.... ..+.+.++++.+++++ .......||||||||++|||||+++|++| +||||
T Consensus 573 i~l~~~~~--~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~il--------iLDEp 642 (710)
T TIGR03796 573 LTLWDPTI--PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSIL--------ILDEA 642 (710)
T ss_pred hhCCCCCC--CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEE--------EEECc
Confidence 99874311 1122334444444421 22346678999999999999999999999 66666
Q ss_pred hhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 238 AVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 238 T~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
| ++||..++. ...+.+. +.++|+|+|||+ .....|||| ++|++|++++.|++++++..
T Consensus 643 t--S~LD~~te~--~i~~~l~----------~~~~T~IiitHrl~~i~~~D~I-ivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 643 T--SALDPETEK--IIDDNLR----------RRGCTCIIVAHRLSTIRDCDEI-IVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred c--ccCCHHHHH--HHHHHHH----------hcCCEEEEEecCHHHHHhCCEE-EEEeCCEEEEecCHHHHHHc
Confidence 6 778865544 2222221 248999999996 777889999 57999999999999998764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=318.79 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=159.6
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------e
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------V 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------~ 145 (397)
++++|+++.|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (210)
T cd03269 1 LEVENVTKRFGR-VTA-----LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDIAAR 69 (210)
T ss_pred CEEEEEEEEECC-EEE-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchhHHHH
Confidence 578999999963 334 999999999999999999999999999999999999 99999999996 3
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
+.++|++|++.++. .+|+.||+.+... ...+..+.+.++++.+++. ....++.+||||||||++|||||+.+
T Consensus 70 ~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 70 NRIGYLPEERGLYP---KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred ccEEEeccCCcCCc---CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 57999999998776 5899999876432 2234456788899999994 45667889999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~i 298 (397)
|+++ +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++||++ ++|++|++
T Consensus 147 p~~l--------llDEP~--~~LD~~~~~--~~~~~l~~~-------~~~~~tii~~sH~~~~~~~~~d~i-~~l~~g~i 206 (210)
T cd03269 147 PELL--------ILDEPF--SGLDPVNVE--LLKDVIREL-------ARAGKTVILSTHQMELVEELCDRV-LLLNKGRA 206 (210)
T ss_pred CCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEECCCHHHHHHhhhEE-EEEeCCEE
Confidence 9999 555555 677754433 233444332 1358899999995 777899999 56999999
Q ss_pred eeeC
Q 015952 299 LGIP 302 (397)
Q Consensus 299 v~~g 302 (397)
++.|
T Consensus 207 ~~~~ 210 (210)
T cd03269 207 VLYG 210 (210)
T ss_pred EecC
Confidence 8754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=326.39 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=166.7
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 72 (255)
T PRK11300 4 PLLSVSGLMMRFGG-LLA-----VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEGL 72 (255)
T ss_pred ceEEEeeEEEEECC-EEE-----EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCCC
Confidence 47999999999953 334 999999999999999999999999999999999999 999999999972
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------------------ChhhHHHHHHHHHHHCCCc-cccc
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------------------ASDNINMIKLWIMEGVRHG-ELVI 198 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------------------~~~~~~~~~~~ll~~vgl~-~~~~ 198 (397)
..++|+||++.+++ .+|+.||+.++.. ...+....+.++++.+++. ....
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 73 PGHQIARMGVVRTFQHVRLFR---EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CHHHHHhcCeEEeccCcccCC---CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 24899999998876 6899999987521 0012234677889999994 4567
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
++.+||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++|
T Consensus 150 ~~~~LS~G~~qrv~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~L~~~~------~~~~~tii~~s 211 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVTQPEIL--------MLDEPA--AGLNPKETK--ELDELIAELR------NEHNVTVLLIE 211 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEE--------EEcCCc--cCCCHHHHH--HHHHHHHHHH------hhcCCEEEEEe
Confidence 78899999999999999999999999 555555 777754433 2333443321 12489999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|+ ++..+||++ ++|++|+++..|++++++.
T Consensus 212 H~~~~~~~~~d~i-~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 212 HDMKLVMGISDRI-YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred CCHHHHHHhCCEE-EEEECCeEEecCCHHHHhh
Confidence 94 778999999 5699999999999887754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=323.70 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=167.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~~i~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 69 (242)
T TIGR03411 1 PILYLEGLSVSFDG-FKA-----LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTGL 69 (242)
T ss_pred CeEEEEeeEEEcCC-eEE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCCC
Confidence 37899999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------------ChhhHHHHHHHHHHHCCCcc-cccCCCCCCh
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSS 205 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSG 205 (397)
..++|+||++.++. .+|+.||+.++.. .......++.++++.+++.. ...++.+|||
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~---~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (242)
T TIGR03411 70 PEHQIARAGIGRKFQKPTVFE---NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146 (242)
T ss_pred CHHHHHhcCeeEeccccccCC---CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence 35999999998876 6899999987532 11234556788999999954 4667889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||+|||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+++|||++||+ ++.
T Consensus 147 Ge~qrv~laral~~~p~~l--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLL--------LLDEPV--AGMTDEETE--KTAELLKSL--------AGKHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EecCCc--cCCCHHHHH--HHHHHHHHH--------hcCCEEEEEECCHHHHH
Confidence 9999999999999999999 555556 777755443 333444333 236899999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.+|||+ ++|++|+++..|++++++.
T Consensus 207 ~~~d~i-~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 207 SIADKV-TVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhCCEE-EEEECCeEEeeCCHHHHhc
Confidence 899999 5699999999999887754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=326.41 Aligned_cols=214 Identities=18% Similarity=0.238 Sum_probs=168.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|++++..-.|++|+|.++|..
T Consensus 5 ~~~l~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYTD-FKA-----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeCC-cee-----ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 458999999999963 335 99999999999999999999999999999999999921111258999999852
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGG 206 (397)
+.++|+||++.++. +|++||+.++.. .....++.+.++++.+++. ....++.+||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFL----MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred ccccHHHHhhceEEEeecccccc----CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 35999999987764 799999987532 1223456678888998872 235668899999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|++| +||||| ++||..... ...+.+.++ ++++|||++||+ ++..
T Consensus 155 ~~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tvii~sH~~~~~~~ 214 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVI--------LMDEPT--SALDPISTG--KIEELIINL--------KESYTIIIVTHNMQQAGR 214 (254)
T ss_pred HHHHHHHHHHHHcCCCEE--------EEeCCC--cccCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHH
Confidence 999999999999999999 555555 777755443 233444332 346899999995 7789
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|||+ ++|++|+++..|++++++..+.+
T Consensus 215 ~~d~i-~~l~~G~i~~~g~~~~~~~~~~~ 242 (254)
T PRK14273 215 ISDRT-AFFLNGCIEEESSTDELFFNPKN 242 (254)
T ss_pred hCCEE-EEEECCEEEEeCCHHHHHhCCCC
Confidence 99999 56999999999999999877654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=327.73 Aligned_cols=215 Identities=19% Similarity=0.274 Sum_probs=168.6
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
++++|+++|+++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 9 ~~~~l~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 9 AQPQIKVENLNLWYGE-KQA-----LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred cceeEEEeeeEEEeCC-eee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 4678999999999963 334 99999999999999999999999999999999999821101279999999852
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc----c-cccCCCCCChH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG----E-LVIRRSDSSSL 206 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~----~-~~~~~~~lSGG 206 (397)
+.+||+||++.++. +|+.||+.++.. ......+.+.++++.+++. . ...++..||||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 158 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP----MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGG 158 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHH
Confidence 35999999987764 799999987532 2223345677899999872 2 35567889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|+|||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.+
T Consensus 159 ~~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~l--------~~~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 159 QQQRLCIARTLAVKPKII--------LFDEPT--SALDPISTA--RIEDLIMNL--------KKDYTIVIVTHNMQQAAR 218 (258)
T ss_pred HHHHHHHHHHHHcCCCEE--------EEeCCC--cccCHHHHH--HHHHHHHHH--------hhCCEEEEEECCHHHHHH
Confidence 999999999999999999 555555 677755443 233444332 247899999995 7789
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|||+ ++|++|++++.|++++++..+.+
T Consensus 219 ~~d~i-~~l~~G~i~~~~~~~~~~~~~~~ 246 (258)
T PRK14268 219 ISDYT-GFFLMGELIEFGQTRQIFHNPRE 246 (258)
T ss_pred hCCEE-EEEECCEEEEeCCHHHHhcCCCC
Confidence 99999 56999999999999999876553
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=319.81 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=158.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
||+++|++++|+.+..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~ 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQA-----LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITRLK 70 (222)
T ss_pred CEEEEeeEEEecCCCeE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCC
Confidence 58999999999433335 999999999999999999999999999999999999 999999999961
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
+.++|+||++.++. .+|+.||+.++.. ...+....+.++++.+++. ...+.+.+||||||||++
T Consensus 71 ~~~~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 71 NREVPFLRRQIGMIFQDHHLLM---DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVG 147 (222)
T ss_pred hhHHHHHHhheEEEecCccccc---cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHH
Confidence 36899999987765 5899999987532 2233445677899999994 456678899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||..... ...+.+.++ .++|.|||++||+ ++..+|||+
T Consensus 148 laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~~~d~i- 207 (222)
T PRK10908 148 IARAVVNKPAVL--------LADEPT--GNLDDALSE--GILRLFEEF-------NRVGVTVLMATHDIGLISRRSYRM- 207 (222)
T ss_pred HHHHHHcCCCEE--------EEeCCC--CcCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-
Confidence 999999999999 555556 777754433 233333332 1358899999995 788899999
Q ss_pred EEeeCCEEee
Q 015952 291 IRTYLGELLG 300 (397)
Q Consensus 291 v~l~~G~iv~ 300 (397)
++|++|+++.
T Consensus 208 ~~l~~G~i~~ 217 (222)
T PRK10908 208 LTLSDGHLHG 217 (222)
T ss_pred EEEECCEEcc
Confidence 5699999864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=326.78 Aligned_cols=206 Identities=13% Similarity=0.162 Sum_probs=167.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~~~~ 70 (258)
T PRK13548 2 MLEARNLSVRLGG-RTL-----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLADWS 70 (258)
T ss_pred eEEEEeEEEEeCC-eee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcccCC
Confidence 6899999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+.++|+||++.++. .+|+.||+.++.. ......+.+.++++.+++. ....++.+||||||||++|||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 71 PAELARRRAVLPQHSSLSF---PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred HHHhhhheEEEccCCcCCC---CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 46999999987754 5799999987543 1223345678899999994 456778999999999999999
Q ss_pred HHc------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 216 KIG------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 216 AL~------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+ .+|++| +||||| ++||+.... ...+.+.++. .++|+|||++||+ ++..+||
T Consensus 148 al~~~~~~~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 148 VLAQLWEPDGPPRWL--------LLDEPT--SALDLAHQH--HVLRLARQLA------HERGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred HHhcccccCCCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEECCHHHHHHhcC
Confidence 999 599999 555556 777755443 3344444331 1358999999995 7788999
Q ss_pred EEEEEeeCCEEeeeCCcccccC
Q 015952 288 RARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~ 309 (397)
++ ++|++|+++..|++++++.
T Consensus 210 ~i-~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 210 RI-VLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred EE-EEEECCEEEeeCCHHHHhC
Confidence 99 5799999999998877654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=333.68 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=166.9
Q ss_pred eEEEEeEEEEECCC----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
+++++|++++|+++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG-----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEC
Confidence 58999999999632 224 999999999999999999999999999999999999 999999999962
Q ss_pred -------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-c-cccCCCCCC
Q 015952 146 -------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-E-LVIRRSDSS 204 (397)
Q Consensus 146 -------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lS 204 (397)
..+||+||++. ++ .+|+.||+.++.. ..++..+++.++++.+++. . ..+++.+||
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLF----ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELS 147 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhc----cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCC
Confidence 35899999973 33 3799999987532 2344556788999999995 3 467789999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++
T Consensus 148 gGq~qrl~laral~~~p~lL--------lLDEPt--~gLD~~~~~--~l~~~l~~l-------~~~g~tvlivsH~~~~~ 208 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEIL--------CLDEPA--AGLDPEGRK--EMMQLFKDY-------QKAGHTVILVTHNMDDV 208 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHH
Confidence 99999999999999999999 555555 777754433 333444332 2358999999995 78
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
.++|||+ ++|++|+++..|++++++..
T Consensus 209 ~~~~d~v-~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 209 AEYADDV-LVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHhCCEE-EEEECCEEEEeCCHHHHhcC
Confidence 8999999 56999999999999887653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=326.99 Aligned_cols=202 Identities=13% Similarity=0.156 Sum_probs=163.0
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ml~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 69 (255)
T PRK11248 1 MLQISHLYADYGG-KPA-----LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEGPG 69 (255)
T ss_pred CEEEEEEEEEeCC-eee-----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCC
Confidence 5899999999963 335 999999999999999999999999999999999999 999999999973
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
..+||+||++.+++ .+|+.+|+.++.. ...+..+.+.++++.+++. ....++.+||||||||++|||||+.+
T Consensus 70 ~~~~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 70 AERGVVFQNEGLLP---WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CcEEEEeCCCccCC---CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 35899999988775 5899999987532 2233456788899999994 34667899999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee--CC
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY--LG 296 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~--~G 296 (397)
|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|+ +|
T Consensus 147 p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~~------~~~g~tviivsH~~~~~~~~~d~i-~~l~~~~G 207 (255)
T PRK11248 147 PQLL--------LLDEPF--GALDAFTRE--QMQTLLLKLW------QETGKQVLLITHDIEEAVFMATEL-VLLSPGPG 207 (255)
T ss_pred CCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCCc
Confidence 9999 555555 677754433 2334443321 2358999999995 788999999 5698 59
Q ss_pred EEeeeCCcc
Q 015952 297 ELLGIPPAK 305 (397)
Q Consensus 297 ~iv~~g~~~ 305 (397)
++++.++.+
T Consensus 208 ~i~~~~~~~ 216 (255)
T PRK11248 208 RVVERLPLN 216 (255)
T ss_pred EEEEEecCC
Confidence 999987753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=345.13 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=161.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------------------eCcEEEEecC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------------------VGDGTYFLQE 154 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------------------~~~ig~v~Q~ 154 (397)
|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+ +++++|+||+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 999999999999999999999999999999999999 99999999984 1469999999
Q ss_pred CCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 155 YTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 155 ~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+.+++ ++|+.||+.++.. ...+.+.++.++++.+|+ +....++.+|||||||||+|||||+.+|++||||||
T Consensus 115 ~~l~p---~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 115 FALMP---WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred CcCCC---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99887 6899999998642 234556778899999999 445778899999999999999999999999955555
Q ss_pred cccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 230 ~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
| ++||+.... ...+.+.++. .+.++|||+|||+ ++.++|||| ++|++|++++.|+++++
T Consensus 192 --------t--s~LD~~~r~--~l~~~L~~l~------~~~~~TII~iTHdl~e~~~l~DrI-~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 192 --------F--SALDPLIRT--QLQDELLELQ------AKLNKTIIFVSHDLDEALKIGNRI-AIMEGGRIIQHGTPEEI 252 (382)
T ss_pred --------C--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecCHHHH
Confidence 5 777755443 3344444331 2358999999995 788999999 56999999999999999
Q ss_pred cCCCC
Q 015952 308 FDIPE 312 (397)
Q Consensus 308 ~~~~~ 312 (397)
+..|.
T Consensus 253 ~~~p~ 257 (382)
T TIGR03415 253 VLNPA 257 (382)
T ss_pred hhCcc
Confidence 87764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=331.20 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=167.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++|+++..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (275)
T PRK13639 1 ILETRDLKYSYPDGTEA-----LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYDK 70 (275)
T ss_pred CEEEEEEEEEeCCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECcccc
Confidence 58899999999633334 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 146 -------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 -------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+.|+|+||++. ++ ..|+.||+.++.. ...+..+++.++++.+++. ....++.+|||||+||+
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~----~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv 146 (275)
T PRK13639 71 KSLLEVRKTVGIVFQNPDDQLF----APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRV 146 (275)
T ss_pred chHHHHHhheEEEeeChhhhhc----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHH
Confidence 35899999973 33 3699999987532 2334456788899999994 45677889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.++|||+
T Consensus 147 ~laral~~~p~ll--------llDEPt--~gLD~~~~~--~l~~~l~~l-------~~~~~til~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 147 AIAGILAMKPEII--------VLDEPT--SGLDPMGAS--QIMKLLYDL-------NKEGITIIISTHDVDLVPVYADKV 207 (275)
T ss_pred HHHHHHhcCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCHHHHHHhCCEE
Confidence 9999999999999 555555 777755443 334444433 1358999999995 778899999
Q ss_pred EEEeeCCEEeeeCCcccccCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~ 311 (397)
++|++|++++.|++++++..+
T Consensus 208 -~~l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 208 -YVMSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred -EEEECCEEEEeCCHHHHhcCh
Confidence 569999999999999887643
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=325.27 Aligned_cols=208 Identities=14% Similarity=0.183 Sum_probs=168.3
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 i~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTV-----LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCC-eeE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 479999999963 335 999999999999999999999999999999999999 999999999852
Q ss_pred -----------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCC
Q 015952 146 -----------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSD 202 (397)
Q Consensus 146 -----------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~ 202 (397)
+.++|+||++.++. ..|+.||+.++.. ........+.++++.+++. .....+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 146 (252)
T TIGR03005 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFP---HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQ 146 (252)
T ss_pred ccccccccchhHHHHHhhCeEEEecCcccCC---CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhh
Confidence 35999999988775 5899999987421 2233455678899999994 34667889
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
|||||+||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+
T Consensus 147 LS~G~~qrv~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVM--------LFDEVT--SALDPELVG--EVLNVIRRLA------SEHDLTMLLVTHEMG 208 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCcEEEEEeCCHH
Confidence 9999999999999999999999 555555 777755433 2334443331 1248999999995
Q ss_pred hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++..+|||+ ++|++|++++.|++++++..+.
T Consensus 209 ~~~~~~d~i-~~l~~G~i~~~g~~~~~~~~~~ 239 (252)
T TIGR03005 209 FAREFADRV-CFFDKGRIVEQGKPDEIFRQPK 239 (252)
T ss_pred HHHHhcCEE-EEEECCEEEEeCCHHHHhcCCC
Confidence 777899999 5699999999999998876654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=360.92 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEEC
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
..+..+++.+.+.+|+.++++.+++.... ....++++||+|+|+++ .++ |+|+||+|++|++++|+|
T Consensus 299 ~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~i~~~i~~G~~~aivG 373 (574)
T PRK11160 299 GAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPV-----LKGLSLQIKAGEKVALLG 373 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCcc-----eecceEEECCCCEEEEEC
Confidence 45667777888899999999876542211 12369999999999653 335 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
|||||||||+|+|+|+++ |++|+|.++|. ++.|+||+|++.+|+ -|+.||+.++... ..
T Consensus 374 ~sGsGKSTL~~ll~g~~~-----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~----~ti~~Ni~~~~~~--~~ 442 (574)
T PRK11160 374 RTGCGKSTLLQLLTRAWD-----PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS----ATLRDNLLLAAPN--AS 442 (574)
T ss_pred CCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc----ccHHHHhhcCCCc--cC
Confidence 999999999999999999 99999999997 357999999999986 5999999997541 22
Q ss_pred HHHHHHHHHHCCCccc-cc----------CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchh
Q 015952 181 NMIKLWIMEGVRHGEL-VI----------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~-~~----------~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~ 249 (397)
.+.+.++++.+++++. .. ....||||||||++|||||+++|++| +||||| ++||+.++.
T Consensus 443 ~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il--------ilDE~t--s~lD~~t~~ 512 (574)
T PRK11160 443 DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL--------LLDEPT--EGLDAETER 512 (574)
T ss_pred HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH
Confidence 3456677888887432 22 45668999999999999999999999 566666 777765544
Q ss_pred hhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 250 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 250 ~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
...+.+.+. .+++|+|+|||+ .....||+| ++|++|++++.|++++++...
T Consensus 513 --~i~~~l~~~--------~~~~tviiitHr~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 513 --QILELLAEH--------AQNKTVLMITHRLTGLEQFDRI-CVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred --HHHHHHHHH--------cCCCEEEEEecChhHHHhCCEE-EEEeCCeEEEeCCHHHHHhcC
Confidence 233333332 368999999996 666779999 579999999999999987553
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=331.50 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=167.9
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-------
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------- 145 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------- 145 (397)
.++|++++|+. ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 26 ~~~~~~~~~~~-~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 26 SKEEILKKTGQ-TVG-----VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhhcCC-ceE-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccChh
Confidence 56789999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.++|+||++.+++ .+|+.||+.++.. ......+.+.++++.+++. .....+.+||||||||++|
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 95 ELRELRRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred hhhhhhcCcEEEEecCcccCC---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHH
Confidence 36999999988775 5899999987532 2233446678899999994 4567789999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++||++ +
T Consensus 172 Aral~~~p~il--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tiii~tH~~~~~~~~~d~v-~ 232 (269)
T cd03294 172 ARALAVDPDIL--------LMDEAF--SALDPLIRR--EMQDELLRLQ------AELQKTIVFITHDLDEALRLGDRI-A 232 (269)
T ss_pred HHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhcCEE-E
Confidence 99999999999 555556 777755443 3334443321 2348999999995 778999999 5
Q ss_pred EeeCCEEeeeCCcccccCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~ 312 (397)
+|++|++++.|++++++..+.
T Consensus 233 ~l~~G~i~~~g~~~~~~~~~~ 253 (269)
T cd03294 233 IMKDGRLVQVGTPEEILTNPA 253 (269)
T ss_pred EEECCEEEEeCCHHHHHhCcC
Confidence 699999999999998876554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=317.97 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=156.7
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|+.+..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 1 IEFINVTKTYPNGTAA-----LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred CEEEEEEEEeCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccCCH
Confidence 4789999999643335 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
+.++|++|++.+++ .+|+.||+.++.. ..+...+++.++++.+++.. ...++.+||||||||++|
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 71 RAIPYLRRKIGVVFQDFRLLP---DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred HHHHHHHHheEEEecCchhcc---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHH
Confidence 35999999998876 6899999987532 23334567788999999954 466788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|+++ +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+||++ +
T Consensus 148 aral~~~p~ll--------llDEPt--~~LD~~~~~--~~~~~l~~~-------~~~~~tiiivtH~~~~~~~~~d~i-~ 207 (214)
T cd03292 148 ARAIVNSPTIL--------IADEPT--GNLDPDTTW--EIMNLLKKI-------NKAGTTVVVATHAKELVDTTRHRV-I 207 (214)
T ss_pred HHHHHcCCCEE--------EEeCCC--CcCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEE-E
Confidence 99999999999 555555 777754443 333444333 1358999999995 777899999 5
Q ss_pred EeeCCEE
Q 015952 292 RTYLGEL 298 (397)
Q Consensus 292 ~l~~G~i 298 (397)
+|++|++
T Consensus 208 ~l~~G~~ 214 (214)
T cd03292 208 ALERGKL 214 (214)
T ss_pred EEeCCcC
Confidence 6999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=317.89 Aligned_cols=197 Identities=17% Similarity=0.220 Sum_probs=155.8
Q ss_pred eEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
+++++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV-----LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLS 70 (221)
T ss_pred CEEEEeeeEEccCCCcceEe-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhh
Confidence 47899999999632 224 999999999999999999999999999999999999 999999999862
Q ss_pred ------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHH
Q 015952 146 ------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRN 208 (397)
Q Consensus 146 ------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqk 208 (397)
+.++|+||++.++. .+|++||+.+... ...+..+.+.++++.+++.+ ..+.+.+||||||
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 147 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLP---DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGER 147 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCC---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 35999999988776 5899999987421 22334456788999999944 5667889999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ .....||
T Consensus 148 qrv~laral~~~p~il--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~tH~~~~~~~~d 209 (221)
T TIGR02211 148 QRVAIARALVNQPSLV--------LADEPT--GNLDNNNAK--IIFDLMLELN------RELNTSFLVVTHDLELAKKLD 209 (221)
T ss_pred HHHHHHHHHhCCCCEE--------EEeCCC--CcCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHhhcC
Confidence 9999999999999999 555555 777755443 2334443321 1348999999995 3335589
Q ss_pred EEEEEeeCCEEe
Q 015952 288 RARIRTYLGELL 299 (397)
Q Consensus 288 rI~v~l~~G~iv 299 (397)
++ ++|++|+++
T Consensus 210 ~v-~~l~~G~i~ 220 (221)
T TIGR02211 210 RV-LEMKDGQLF 220 (221)
T ss_pred EE-EEEeCCEec
Confidence 99 569999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=324.73 Aligned_cols=214 Identities=18% Similarity=0.314 Sum_probs=167.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+.+|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++++...|++|+|.++|..
T Consensus 2 ~~~l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 2 KFAIETVNLRVYYGS-NHV-----IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred cceEEEEeEEEEeCC-eee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 357999999999963 334 99999999999999999999999999999999999811000259999999862
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCc-----ccccCCCCCCh
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSS 205 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSG 205 (397)
+.++|+||++.++. .+|+.||+.++.. ........+.++++.+++. ....++.+|||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFP---HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred cccChHHHhhceeEEecCCccCC---CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 35899999988876 5899999987531 1233445677889999873 23566888999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.
T Consensus 153 G~~qrv~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~sH~~~~~~ 212 (253)
T PRK14267 153 GQRQRLVIARALAMKPKIL--------LMDEPT--ANIDPVGTA--KIEELLFEL--------KKEYTIVLVTHSPAQAA 212 (253)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------hhCCEEEEEECCHHHHH
Confidence 9999999999999999999 555555 777754433 333444332 236899999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+|||+ ++|++|++++.|++++++..+.
T Consensus 213 ~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 240 (253)
T PRK14267 213 RVSDYV-AFLYLGKLIEVGPTRKVFENPE 240 (253)
T ss_pred hhCCEE-EEEECCEEEEeCCHHHHHhCCC
Confidence 999999 5699999999999998876543
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=329.95 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=165.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
||+++||+++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 1 ml~~~~l~~~~~~-~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~ 69 (271)
T PRK13638 1 MLATSDLWFRYQD-EPV-----LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYSK 69 (271)
T ss_pred CeEEEEEEEEcCC-ccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEccccc
Confidence 5899999999963 334 999999999999999999999999999999999999 999999999963
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.+||+||++..+. +..++.+|+.++.. ...+..+.+.++++.+++. ....++.+||||||||++|
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 70 RGLLALRQQVATVFQDPEQQI--FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred CCHHHHHhheEEEeeChhhcc--ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHH
Confidence 35999999975321 13578999876422 2233445677899999994 4566788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ .+..+|||+ +
T Consensus 148 araL~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tii~vtH~~~~~~~~~d~i-~ 207 (271)
T PRK13638 148 AGALVLQARYL--------LLDEPT--AGLDPAGRT--QMIAIIRRI-------VAQGNHVIISSHDIDLIYEISDAV-Y 207 (271)
T ss_pred HHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-E
Confidence 99999999999 555555 677754433 334444433 1358999999995 777899999 5
Q ss_pred EeeCCEEeeeCCcccccCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~ 311 (397)
+|++|++++.|++++++..+
T Consensus 208 ~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 208 VLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred EEECCEEEEeCCHHHHhcCh
Confidence 69999999999998876543
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.01 Aligned_cols=237 Identities=13% Similarity=0.187 Sum_probs=185.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~v 106 (397)
.....+..+++.+.+.+|+.++++.+++.+.. ....++++||+|+|++. .++ |+|+||+|++||.+
T Consensus 436 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v-----L~~isl~i~~Ge~v 510 (711)
T TIGR00958 436 VLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV-----LKGLTFTLHPGEVV 510 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc-----ccCceEEEcCCCEE
Confidence 33445666777788899999999876553321 12359999999999642 234 99999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
+|+||||||||||+|+|+|+++ |++|+|.+||+ +++|+||+|++.+|. -|++||+.++...
T Consensus 511 aIvG~SGsGKSTLl~lL~gl~~-----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~----gTIreNI~~g~~~ 581 (711)
T TIGR00958 511 ALVGPSGSGKSTVAALLQNLYQ-----PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS----GSVRENIAYGLTD 581 (711)
T ss_pred EEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc----cCHHHHHhcCCCC
Confidence 9999999999999999999999 99999999997 368999999999986 6999999998642
Q ss_pred hhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 177 SDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
.. ++.+.++++.+++++ ......+||||||||++|||||+++|++| +||||| ++||
T Consensus 582 ~~--~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL--------ILDEpT--SaLD 649 (711)
T TIGR00958 582 TP--DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL--------ILDEAT--SALD 649 (711)
T ss_pred CC--HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE--------EEEccc--cccC
Confidence 11 233445555555421 12335678999999999999999999999 666667 8888
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
..++. .+.+. . ..+++|+|+|||+ .....||+| ++|++|+|++.|++++++++.
T Consensus 650 ~~te~------~i~~~-----~-~~~~~TvIiItHrl~~i~~aD~I-ivL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 650 AECEQ------LLQES-----R-SRASRTVLLIAHRLSTVERADQI-LVLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHH------HHHHh-----h-ccCCCeEEEEeccHHHHHhCCEE-EEEECCEEEEeeCHHHHHhCC
Confidence 65443 22221 1 1368999999996 677889999 579999999999999988653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=326.55 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=168.5
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 8 ~~~~l~i~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 76 (265)
T PRK10575 8 SDTTFALRNVSFRVPG-RTL-----LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLE 76 (265)
T ss_pred CCceEEEeeEEEEECC-EEE-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehh
Confidence 3568999999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
+.++|+||++.++. .+|+.||+.++.. ......+.+.++++.+++. ....++.+||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 153 (265)
T PRK10575 77 SWSSKAFARKVAYLPQQLPAAE---GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGER 153 (265)
T ss_pred hCCHHHHhhheEEeccCCCCCC---CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHH
Confidence 46999999977665 5899999987532 1123345678899999994 45677899999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++. ...|+|||++||+ ++.++|
T Consensus 154 qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~~~~~l~~l~------~~~~~tiii~sH~~~~i~~~~ 215 (265)
T PRK10575 154 QRAWIAMLVAQDSRCL--------LLDEPT--SALDIAHQV--DVLALVHRLS------QERGLTVIAVLHDINMAARYC 215 (265)
T ss_pred HHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 555555 777754433 2334443331 1248999999995 778999
Q ss_pred cEEEEEeeCCEEeeeCCcccccC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~ 309 (397)
||+ ++|++|++++.|+++++..
T Consensus 216 d~i-~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 216 DYL-VALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CEE-EEEECCeEEEecCHHHhcC
Confidence 999 5799999999998877653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=324.52 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=167.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (255)
T PRK11231 2 TLRTENLTVGYGT-KRI-----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPISMLS 70 (255)
T ss_pred EEEEEeEEEEECC-EEE-----EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhHHCC
Confidence 6899999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+.++|+||++.++. .+|++||+.++.. ........+.++++.+++. ....++.+|||||+||+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~---~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 71 SRQLARRLALLPQHHLTPE---GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRA 147 (255)
T ss_pred HHHHhhheEEecccCCCCC---CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHH
Confidence 35999999988765 5799999987531 1223345678899999994 45677889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.++||++
T Consensus 148 ~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~l-------~~~~~tiii~tH~~~~~~~~~d~i 208 (255)
T PRK11231 148 FLAMVLAQDTPVV--------LLDEPT--TYLDINHQV--ELMRLMREL-------NTQGKTVVTVLHDLNQASRYCDHL 208 (255)
T ss_pred HHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEECCHHHHHHhcCEE
Confidence 9999999999999 555555 777755443 333444333 1358999999995 778999999
Q ss_pred EEEeeCCEEeeeCCcccccC
Q 015952 290 RIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|+++..|++++++.
T Consensus 209 -~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 209 -VVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred -EEEECCeEEEEcCHHHhcC
Confidence 5699999999998877653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=341.42 Aligned_cols=203 Identities=15% Similarity=0.198 Sum_probs=166.5
Q ss_pred eEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------
Q 015952 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---------- 145 (397)
Q Consensus 76 nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---------- 145 (397)
||+++|++ .. + ++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 4 ~l~~~~~~--~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~~~~~~ 70 (354)
T TIGR02142 4 RFSKRLGD--FS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSRKGIFL 70 (354)
T ss_pred EEEEEECC--EE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCcccccc
Confidence 89999952 23 6 8999999999999999999999999999999999 999999999952
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.+++ ++|+.||+.++.. ...+..+++.++++.+++. ...+++.+|||||||||+|||||+
T Consensus 71 ~~~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 71 PPEKRRIGYVFQEARLFP---HLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred chhhCCeEEEecCCccCC---CCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 45999999998886 6899999988654 2233455688899999994 456778999999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|++||| |||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+||++ ++|++|
T Consensus 148 ~~p~lllL--------DEPt--s~LD~~~~~--~l~~~L~~l~------~~~g~tiiivtH~~~~~~~~~d~i-~~l~~G 208 (354)
T TIGR02142 148 SSPRLLLM--------DEPL--AALDDPRKY--EILPYLERLH------AEFGIPILYVSHSLQEVLRLADRV-VVLEDG 208 (354)
T ss_pred cCCCEEEE--------cCCC--cCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHHhCCEE-EEEeCC
Confidence 99999955 5555 777755443 3444444431 2348999999995 788999999 579999
Q ss_pred EEeeeCCcccccCCCCC
Q 015952 297 ELLGIPPAKQIFDIPES 313 (397)
Q Consensus 297 ~iv~~g~~~el~~~~~~ 313 (397)
+++..|++++++..|..
T Consensus 209 ~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 209 RVAAAGPIAEVWASPDL 225 (354)
T ss_pred EEEEECCHHHHhcCcCc
Confidence 99999999999887754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=369.23 Aligned_cols=239 Identities=17% Similarity=0.159 Sum_probs=186.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~v 106 (397)
.....++..++..+.+.+|+.++++.+++.... ....++++||+|+|+.+.++ |+|+||+|++|+.+
T Consensus 429 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~isl~i~~G~~v 503 (708)
T TIGR01193 429 ENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNI-----LSDISLTIKMNSKT 503 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcc-----eeceeEEECCCCEE
Confidence 345566778888889999999999876553221 12358999999999644445 99999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
||+||||||||||+++|+|+++ |++|+|.+||. ++.||||+|++.+|+ -|++||+.++..+
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~----gTI~eNi~l~~~~ 574 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQ-----ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS----GSILENLLLGAKE 574 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCC-----CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh----HHHHHHHhccCCC
Confidence 9999999999999999999999 99999999997 468999999999986 5999999997321
Q ss_pred hhhHHHHHHHHHHHCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 177 SDNINMIKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
.. ..+.+.++++..+++ ........||||||||++|||||+++|++| +||||| ++||
T Consensus 575 ~~-~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~il--------iLDE~T--s~LD 643 (708)
T TIGR01193 575 NV-SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL--------ILDEST--SNLD 643 (708)
T ss_pred CC-CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEE--------EEeCcc--ccCC
Confidence 11 112233444444431 123346778999999999999999999999 666666 7888
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
..++. ...+.+.+ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 644 ~~te~--~i~~~L~~---------~~~~T~IiitHr~~~~~~~D~i-~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 644 TITEK--KIVNNLLN---------LQDKTIIFVAHRLSVAKQSDKI-IVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHH--HHHHHHHH---------hcCCEEEEEecchHHHHcCCEE-EEEECCEEEEECCHHHHHhc
Confidence 65544 22333322 147899999996 777889999 57999999999999998754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=329.95 Aligned_cols=208 Identities=15% Similarity=0.172 Sum_probs=167.0
Q ss_pred CeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
++++++||+++|+.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYA-----LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSE 73 (279)
T ss_pred ceEEEEEEEEEeCCCCccc-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 579999999999632 224 999999999999999999999999999999999999 99999999997
Q ss_pred ------eCcEEEEecCCC-CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 145 ------VGDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 ------~~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
++.|||+||++. ++. ..|+.||+.++.. ...+..+++.++++.+++. ....++.+||||||||++
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~ 150 (279)
T PRK13635 74 ETVWDVRRQVGMVFQNPDNQFV---GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA 150 (279)
T ss_pred CcHHHHhhheEEEEeCHHHhcc---cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence 246999999973 333 4799999987532 2334456788999999994 456778999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ .+. .|||+
T Consensus 151 laral~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~l~~l~------~~~~~tilivsH~~~~~~-~~d~i- 210 (279)
T PRK13635 151 IAGVLALQPDII--------ILDEAT--SMLDPRGRR--EVLETVRQLK------EQKGITVLSITHDLDEAA-QADRV- 210 (279)
T ss_pred HHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HcCCCEEEEEecCHHHHH-cCCEE-
Confidence 999999999999 555555 677755433 3344444331 1248999999995 554 69999
Q ss_pred EEeeCCEEeeeCCcccccCC
Q 015952 291 IRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~ 310 (397)
++|++|++++.|++++++..
T Consensus 211 ~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 211 IVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 56999999999998887654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=316.93 Aligned_cols=195 Identities=17% Similarity=0.223 Sum_probs=157.6
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
++++|++++|++ ..+ |+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~-~~~-----l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 68 (211)
T cd03264 1 LQLENLTKRYGK-KRA-----LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQPQ 68 (211)
T ss_pred CEEEEEEEEECC-EEE-----EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccccchH
Confidence 579999999953 334 99999999999 999999999999999999999999 99999999995
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHH
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL 217 (397)
++.++|+||++.++. .+|+.||+.+... ...+..+.+.++++.+++. .....+.+||||||||++|||||
T Consensus 69 ~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 69 KLRRRIGYLPQEFGVYP---NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred HHHhheEEecCCCcccc---cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 356999999998776 5799999987432 2233456678899999994 45667889999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL 295 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~ 295 (397)
+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ .+.++|||+ ++|++
T Consensus 146 ~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tii~vsH~~~~~~~~~d~i-~~l~~ 204 (211)
T cd03264 146 VGDPSIL--------IVDEPT--AGLDPEERI--RFRNLLSEL--------GEDRIVILSTHIVEDVESLCNQV-AVLNK 204 (211)
T ss_pred hcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH--------hCCCEEEEEcCCHHHHHHhCCEE-EEEEC
Confidence 9999999 555555 677755443 233444332 235899999995 677899999 57999
Q ss_pred CEEeeeC
Q 015952 296 GELLGIP 302 (397)
Q Consensus 296 G~iv~~g 302 (397)
|++++.|
T Consensus 205 g~i~~~g 211 (211)
T cd03264 205 GKLVFEG 211 (211)
T ss_pred CEEEecC
Confidence 9998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=323.28 Aligned_cols=214 Identities=16% Similarity=0.220 Sum_probs=167.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++|+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+|+|+|++......|++|+|.++|+.
T Consensus 4 ~~~l~~~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGD-FQA-----LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECC-eee-----ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 468999999999963 334 99999999999999999999999999999999986310001489999999952
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGG 206 (397)
+.++|+||++.++. .|+.||+.++.. ......+.+.++++.+++.. ....+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFP----KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCc----CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 35999999987775 499999987532 12234566788899999832 34567889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.+
T Consensus 154 q~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 154 QQQRLCIARALAVEPEVL--------LMDEPA--SALDPIATQ--KIEELIHEL--------KARYTIIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEEecHHHHHH
Confidence 999999999999999999 555555 777754433 334444332 346899999995 7789
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|||+ ++|++|++++.|++++++..+..
T Consensus 214 ~~d~v-~~l~~G~i~~~g~~~~~~~~~~~ 241 (253)
T PRK14242 214 VSDVT-AFFYMGKLIEVGPTEQIFTRPRE 241 (253)
T ss_pred hCCEE-EEEECCEEEEeCCHHHHHcCCCc
Confidence 99999 56999999999999988876553
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=353.90 Aligned_cols=249 Identities=15% Similarity=0.156 Sum_probs=187.5
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhccc------------------------------
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQSY------------------------------ 61 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------------------------------ 61 (397)
+==|||||++||+.....+++.+.+.+.. ...+.++.+..
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRE 245 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCC
Confidence 34589999999999999998888876532 11111111100
Q ss_pred -----cc-----cccCCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCC
Q 015952 62 -----DQ-----LRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (397)
Q Consensus 62 -----~~-----~~~~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~ 131 (397)
+. ......++++++|+++.|+ . + |+|+||+|++|++++|+||||||||||+|+|+|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~-~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--- 314 (510)
T PRK09700 246 LQNRFNAMKENVSNLAHETVFEVRNVTSRDR--K-K-----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--- 314 (510)
T ss_pred ccccccccccccccCCCCcEEEEeCccccCC--C-c-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---
Confidence 00 0001234799999999872 2 4 999999999999999999999999999999999999
Q ss_pred CCCcccEEEECcee-----------CcEEEEecCC---CCCCCCCCccHHHHHhcCCC-------------ChhhHHHHH
Q 015952 132 FASERAQVTYNSSV-----------GDGTYFLQEY---TIPRGSNSFSLYDTRSLSDD-------------ASDNINMIK 184 (397)
Q Consensus 132 ~~p~~G~I~i~G~~-----------~~ig~v~Q~~---~l~~~~~~ltv~eni~~~~~-------------~~~~~~~~~ 184 (397)
|++|+|.++|+. +.+||+||++ .+++ .+|++||+.++.. .....+..+
T Consensus 315 --p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (510)
T PRK09700 315 --RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP---NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTA 389 (510)
T ss_pred --CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC---CCcHHHHhccccccccccccccccccChHHHHHHH
Confidence 999999999952 3699999984 4554 6899999987532 112233457
Q ss_pred HHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcC
Q 015952 185 LWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 262 (397)
Q Consensus 185 ~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~ 262 (397)
.++++.+++. + ..+++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++
T Consensus 390 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL--------lLDEPt--~~LD~~~~~--~l~~~l~~l-- 455 (510)
T PRK09700 390 ENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVI--------IFDEPT--RGIDVGAKA--EIYKVMRQL-- 455 (510)
T ss_pred HHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEE--------EECCCC--CCcCHHHHH--HHHHHHHHH--
Confidence 7899999994 4 56778999999999999999999999999 555556 777755443 334444433
Q ss_pred CCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCccc
Q 015952 263 CPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQ 306 (397)
Q Consensus 263 ~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~e 306 (397)
.++|+|||+|||| ++..+|||+ ++|++|+++..++..+
T Consensus 456 -----~~~g~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 456 -----ADDGKVILMVSSELPEIITVCDRI-AVFCEGRLTQILTNRD 495 (510)
T ss_pred -----HHCCCEEEEEcCCHHHHHhhCCEE-EEEECCEEEEEecCcc
Confidence 1358999999995 888999999 5799999998776633
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=326.36 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=168.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+|+++||+++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 5 ~~~l~i~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 73 (265)
T PRK10253 5 VARLRGEQLTLGYGK-YTV-----AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQH 73 (265)
T ss_pred ccEEEEEEEEEEECC-EEE-----eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhhh
Confidence 458999999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQ 209 (397)
+.++|+||++.++. ..|+.||+.++.. ........+.++++.+++. ...+++.+|||||||
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~---~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (265)
T PRK10253 74 YASKEVARRIGLLAQNATTPG---DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQ 150 (265)
T ss_pred CCHHHHhhheEEeeccCcCCC---CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHH
Confidence 46999999988775 5899999987531 1123345678899999994 457778999999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
|++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++||
T Consensus 151 rv~laral~~~p~ll--------llDEPt--~gLD~~~~~--~l~~~L~~l~------~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 151 RAWIAMVLAQETAIM--------LLDEPT--TWLDISHQI--DLLELLSELN------REKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred HHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999 555555 677754443 3344444331 1248999999995 7889999
Q ss_pred EEEEEeeCCEEeeeCCcccccC
Q 015952 288 RARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~ 309 (397)
|+ ++|++|+++..|++++++.
T Consensus 213 ~i-~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 213 HL-IALREGKIVAQGAPKEIVT 233 (265)
T ss_pred EE-EEEECCEEEEeCCHHHHhh
Confidence 99 5799999999999877653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=321.46 Aligned_cols=204 Identities=16% Similarity=0.140 Sum_probs=165.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGA-HQA-----LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECC-eee-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 6899999999963 335 999999999999999999999999999999999999 999999999862
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCC-----CChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD-----DASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~-----~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
+.++|+||++.++. .+|+.||+.+.. ....+....+.++++.+|+. .....+.+||||||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~---~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWP---HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQ 147 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 35899999988876 689999996421 12233456678899999994 45667889999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .++|+|+|++||+ ++..+|
T Consensus 148 qrv~laral~~~p~ll--------ilDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~sh~~~~~~~~~ 208 (242)
T PRK11124 148 QRVAIARALMMEPQVL--------LFDEPT--AALDPEITA--QIVSIIREL-------AETGITQVIVTHEVEVARKTA 208 (242)
T ss_pred HHHHHHHHHhcCCCEE--------EEcCCC--CcCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhc
Confidence 9999999999999999 555555 777754433 333444332 2358999999995 777899
Q ss_pred cEEEEEeeCCEEeeeCCccccc
Q 015952 287 DRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~ 308 (397)
||+ ++|++|+++..|+++++.
T Consensus 209 d~i-~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 209 SRV-VYMENGHIVEQGDASCFT 229 (242)
T ss_pred CEE-EEEECCEEEEeCCHHHhc
Confidence 999 569999999999887653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=367.59 Aligned_cols=238 Identities=18% Similarity=0.190 Sum_probs=186.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~v 106 (397)
.....+..++..+.+.+|+.++++.+++.... ....++++||+|+|+++ .++ |+|+||+|++||.+
T Consensus 420 ~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~v-----L~~i~l~i~~G~~i 494 (694)
T TIGR03375 420 QLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA-----LDNVSLTIRPGEKV 494 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccc-----eeeeeEEECCCCEE
Confidence 44556777888888999999999876653211 12358999999999643 334 99999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
||+||||||||||+|+|+|+++ |++|+|.+||. ++.|+||+|++.+|+ -|++||+.++...
T Consensus 495 aIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~----~TI~eNi~~~~~~ 565 (694)
T TIGR03375 495 AIIGRIGSGKSTLLKLLLGLYQ-----PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY----GTLRDNIALGAPY 565 (694)
T ss_pred EEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh----hhHHHHHhCCCCC
Confidence 9999999999999999999999 99999999997 468999999999986 5999999998541
Q ss_pred hhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 177 SDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
. ..+.+.++++.+++.+ .......||||||||++|||||+++|+++ +||||| ++||
T Consensus 566 ~--~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~il--------iLDE~T--s~LD 633 (694)
T TIGR03375 566 A--DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL--------LLDEPT--SAMD 633 (694)
T ss_pred C--CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEeCCC--CCCC
Confidence 1 1223344444444421 12345678999999999999999999999 666666 7888
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+.++. ...+.+.++ .+++|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 634 ~~te~--~i~~~l~~~--------~~~~T~iiItHrl~~~~~~D~i-ivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 634 NRSEE--RFKDRLKRW--------LAGKTLVLVTHRTSLLDLVDRI-IVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHH--HHHHHHHHH--------hCCCEEEEEecCHHHHHhCCEE-EEEeCCEEEeeCCHHHHHHH
Confidence 66554 233334332 358999999996 777899999 57999999999999988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=317.07 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=155.4
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----eCc
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----VGD 147 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----~~~ 147 (397)
+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|. ++.
T Consensus 1 ~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~~ 69 (213)
T cd03235 1 EVEDLTVSYGG-HPV-----LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLEKERKR 69 (213)
T ss_pred CcccceeEECC-EEe-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHHHHHhh
Confidence 47899999963 334 999999999999999999999999999999999999 99999999996 467
Q ss_pred EEEEecCCCCCCCCCCccHHHHHhcCCCC--------hhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------SDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 148 ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
++|+||++.++. .+.+|+.||+.++... .....+.+.++++.+++. ...+++.+||||||||++|||||+
T Consensus 70 i~~v~q~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 70 IGYVPQRRSIDR-DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred eEEecccccccc-CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999999987632 1137999999875431 123456788899999994 456678999999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++||++ ++|++|
T Consensus 149 ~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~~ 208 (213)
T cd03235 149 QDPDLL--------LLDEPF--AGVDPKTQE--DIYELLREL-------RREGMTILVVTHDLGLVLEYFDRV-LLLNRT 208 (213)
T ss_pred cCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHHHhcCEE-EEEcCc
Confidence 999999 555555 677754433 334444433 1368999999995 778899999 568876
Q ss_pred EEeeeC
Q 015952 297 ELLGIP 302 (397)
Q Consensus 297 ~iv~~g 302 (397)
+++.|
T Consensus 209 -~~~~g 213 (213)
T cd03235 209 -VVASG 213 (213)
T ss_pred -EeecC
Confidence 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=336.43 Aligned_cols=190 Identities=12% Similarity=0.117 Sum_probs=158.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---------CcEEEEecCCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---------GDGTYFLQEYTIPRGSNS 163 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---------~~ig~v~Q~~~l~~~~~~ 163 (397)
|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.. +.+||+||++.++. .
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~---~ 80 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE---D 80 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC---C
Confidence 999999999999999999999999999999999999 999999999962 46999999998876 6
Q ss_pred ccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhh
Q 015952 164 FSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 238 (397)
Q Consensus 164 ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT 238 (397)
+|+.||+.+... ...+..+++.++++.+++. ...+++.+||||||||++|||||+.+|++| +|||||
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--------lLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL--------FLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEE--------EEeCCC
Confidence 899999987432 2334456788999999994 456778899999999999999999999999 555556
Q ss_pred hhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 239 VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 239 ~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++||+.... ...+.+.++ .++|+|||++||+ ++.++|||| ++|++|+++..|+++++...
T Consensus 153 --~gLD~~~~~--~l~~~l~~~-------~~~g~tvi~~sH~~~~~~~~~d~v-~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 153 --TGLDPRTRR--AIWDYIRAL-------KEEGVTILLTTHYMEEADKLCDRI-AIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred --cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEECCHHHHHHh
Confidence 777765443 233444333 2358999999994 888999999 56999999999999887643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=317.47 Aligned_cols=201 Identities=17% Similarity=0.219 Sum_probs=159.4
Q ss_pred CCeEEEEeEEEEECCCc---eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee
Q 015952 69 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~---~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~ 145 (397)
+++|+++|++++|+++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~ 73 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI-----LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQP 73 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE-----EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEE
Confidence 35899999999996431 24 999999999999999999999999999999999999 999999999962
Q ss_pred --------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChH
Q 015952 146 --------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSL 206 (397)
Q Consensus 146 --------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGG 206 (397)
+.++|+||++.+++ .+|+.||+.+... .....++++.++++.+++. ....++.+||||
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~q~~~l~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 150 (228)
T PRK10584 74 LHQMDEEARAKLRAKHVGFVFQSFMLIP---TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGG 150 (228)
T ss_pred cccCCHHHHHHHHhheEEEEEcccccCC---CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHH
Confidence 36999999988776 5899999976421 2234456788899999994 446678899999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSL 285 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~ 285 (397)
||||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|.|||++||+ .....
T Consensus 151 e~qrl~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~~~ 212 (228)
T PRK10584 151 EQQRVALARAFNGRPDVL--------FADEPT--GNLDRQTGD--KIADLLFSLN------REHGTTLILVTHDLQLAAR 212 (228)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHh
Confidence 999999999999999999 555555 677754433 2334443321 1348899999995 33456
Q ss_pred ccEEEEEeeCCEEeee
Q 015952 286 TDRARIRTYLGELLGI 301 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~ 301 (397)
||++ ++|++|++++.
T Consensus 213 ~d~i-~~l~~g~i~~~ 227 (228)
T PRK10584 213 CDRR-LRLVNGQLQEE 227 (228)
T ss_pred CCEE-EEEECCEEEec
Confidence 9999 56999999753
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=326.30 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=166.2
Q ss_pred eEEEEeEEEEECC--------CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEEC
Q 015952 71 LTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (397)
Q Consensus 71 ~lel~nvs~~Y~~--------~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~ 142 (397)
+|+++||+++|+. +..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 71 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV-----LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFR 71 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE-----eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEC
Confidence 6899999999953 1224 999999999999999999999999999999999999 999999999
Q ss_pred cee-------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-c-cccCC
Q 015952 143 SSV-------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-E-LVIRR 200 (397)
Q Consensus 143 G~~-------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~-~~~~~ 200 (397)
|.. +.++|+||++. ++. .+|+.||+.+... ......+.+.++++.+++. . ...++
T Consensus 72 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 148 (265)
T TIGR02769 72 GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP---RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP 148 (265)
T ss_pred CEEccccCHHHHHHHhhceEEEecChhhhcCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 962 35999999973 443 5799999865421 2223456678899999994 4 46678
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+
T Consensus 149 ~~LSgGe~qrv~laral~~~p~il--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tiiivsH~ 210 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAVKPKLI--------VLDEAV--SNLDMVLQA--VILELLRKLQ------QAFGTAYLFITHD 210 (265)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCcEEEEEeCC
Confidence 899999999999999999999999 555555 777754433 3444444431 1248999999995
Q ss_pred --hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 281 --DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 281 --~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.+..+||++ ++|++|++++.|++++++.
T Consensus 211 ~~~~~~~~d~i-~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 211 LRLVQSFCQRV-AVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHHHhcEE-EEEeCCEEEEECCHHHHcC
Confidence 777899999 5799999999999999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=318.49 Aligned_cols=206 Identities=15% Similarity=0.159 Sum_probs=166.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++|+ +. ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~-~~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 67 (232)
T PRK10771 1 MLKLTDITWLYH-HL-------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTTTP 67 (232)
T ss_pred CeEEEEEEEEEC-Cc-------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCcCC
Confidence 589999999995 22 348999999999999999999999999999999999 999999999972
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCC----hhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHH
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA----SDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~----~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL 217 (397)
+.++|+||++.++. .+|+.||+.++... .....+++.++++.+++. ...+.+.+||||||||++||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 68 PSRRPVSMLFQENNLFS---HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred hhhccEEEEeccccccc---CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 46999999988776 68999999875321 223356688899999994 45777889999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL 295 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~ 295 (397)
+.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++
T Consensus 145 ~~~p~ll--------lLDEP~--~gLD~~~~~--~~~~~l~~~~------~~~~~tiii~sH~~~~~~~~~d~i-~~l~~ 205 (232)
T PRK10771 145 VREQPIL--------LLDEPF--SALDPALRQ--EMLTLVSQVC------QERQLTLLMVSHSLEDAARIAPRS-LVVAD 205 (232)
T ss_pred hcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEECCHHHHHHhCCEE-EEEEC
Confidence 9999999 555555 677754433 2334444331 1348999999995 678899999 56999
Q ss_pred CEEeeeCCcccccCCC
Q 015952 296 GELLGIPPAKQIFDIP 311 (397)
Q Consensus 296 G~iv~~g~~~el~~~~ 311 (397)
|++++.|++++++..+
T Consensus 206 g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 206 GRIAWDGPTDELLSGK 221 (232)
T ss_pred CEEEEeCCHHHHHhCh
Confidence 9999999988877543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=321.44 Aligned_cols=209 Identities=17% Similarity=0.224 Sum_probs=166.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+++++|+++.|+. ..+ |+|+||+|++||+++|+||||||||||+|+|+|++++.. |++|+|.++|+
T Consensus 2 ~~~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQA-----LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEECC-Eee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccCC
Confidence 5889999999963 334 999999999999999999999999999999999974211 69999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSLRNR 209 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGGqkQ 209 (397)
++.++|+||++.++. .|+.||+.++.. .....+.++.++++.+++.. ...++.+|||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 149 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV----KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ 149 (246)
T ss_pred HHHHhhhEEEEecCCcccc----ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH
Confidence 246999999998875 699999987532 11234456778999999932 34567889999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
|++|||||+.+|+++ +||||| ++||..... ...+.+.++ .+|+|||++||+ ++..+||
T Consensus 150 rv~laral~~~p~ll--------lLDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~tH~~~~~~~~~d 209 (246)
T PRK14269 150 RLCIARALAIKPKLL--------LLDEPT--SALDPISSG--VIEELLKEL--------SHNLSMIMVTHNMQQGKRVAD 209 (246)
T ss_pred HHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH--------hCCCEEEEEecCHHHHHhhCc
Confidence 999999999999999 555555 777754433 233444332 248899999995 7889999
Q ss_pred EEEEEeeCCEEeeeCCcccccCCCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|+ ++|++|++++.|++++++..+.
T Consensus 210 ~i-~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 210 YT-AFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred EE-EEEECCEEEEECCHHHHHhCCC
Confidence 99 5699999999999999876553
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=313.01 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=157.6
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
++++|++++|+ +. ..|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~l~~~~~-~~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~~~~ 67 (211)
T cd03298 1 VRLDKIRFSYG-EQ-------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTAAPP 67 (211)
T ss_pred CEEEeEEEEeC-CE-------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCcCCH
Confidence 47899999995 22 238999999999999999999999999999999999 99999999996
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC----hhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA----SDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~----~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
++.++|+||++.++. .+|+.||+.++... ....++.+.++++.+++. .....+.+||||||||++|||||+
T Consensus 68 ~~~~i~~~~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 68 ADRPVSMLFQENNLFA---HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred hHccEEEEecccccCC---CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHh
Confidence 246999999998776 68999999876431 123455678899999994 456678899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++|
T Consensus 145 ~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G 205 (211)
T cd03298 145 RDKPVL--------LLDEPF--AALDPALRA--EMLDLVLDLH------AETKMTVLMVTHQPEDAKRLAQRV-VFLDNG 205 (211)
T ss_pred cCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHhhhCEE-EEEECC
Confidence 999999 555555 777755443 2334443321 2358999999995 778999999 579999
Q ss_pred EEeeeC
Q 015952 297 ELLGIP 302 (397)
Q Consensus 297 ~iv~~g 302 (397)
++++.|
T Consensus 206 ~i~~~~ 211 (211)
T cd03298 206 RIAAQG 211 (211)
T ss_pred EEeecC
Confidence 998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=328.99 Aligned_cols=209 Identities=16% Similarity=0.209 Sum_probs=167.4
Q ss_pred CeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc---cEEEECcee
Q 015952 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~---G~I~i~G~~ 145 (397)
.+|+++|++++|++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~-----l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPA-----LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred ceEEEEEEEEEcCCCCccc-----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 479999999999632 224 999999999999999999999999999999999999 887 999999972
Q ss_pred ----------CcEEEEecCCC-CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHH
Q 015952 146 ----------GDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 ----------~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQ 209 (397)
+.+||+||++. .+. ..|++||+.++.. ..++..+++.++++.+++. ....++.+|||||+|
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~q 150 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFV---GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQ 150 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhc---cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHH
Confidence 46999999974 333 4799999987532 2344556788899999994 457778999999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
|++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ .+ ..||
T Consensus 151 rv~laral~~~P~ll--------llDEPt--~gLD~~~~~--~l~~~l~~l~------~~~g~tvli~tH~~~~~-~~~d 211 (282)
T PRK13640 151 RVAIAGILAVEPKII--------ILDEST--SMLDPAGKE--QILKLIRKLK------KKNNLTVISITHDIDEA-NMAD 211 (282)
T ss_pred HHHHHHHHHcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHH-HhCC
Confidence 999999999999999 555555 677754433 2334443321 1348999999995 55 5799
Q ss_pred EEEEEeeCCEEeeeCCcccccCCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+ ++|++|++++.|++++++..+
T Consensus 212 ~i-~~l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 212 QV-LVLDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred EE-EEEECCEEEEeCCHHHHhcCH
Confidence 99 579999999999998887643
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=322.45 Aligned_cols=213 Identities=17% Similarity=0.289 Sum_probs=168.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++++++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 10 ~~~l~i~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ-HHA-----LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC-eee-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 568999999999963 334 99999999999999999999999999999999998710000269999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGG 206 (397)
+.+||+||++.++. .|++||+.+... ...+..+++.++++.+++.. ...++.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFP----QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCcccc----cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 35999999988775 499999987532 12334456778899998832 35667889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .+++|||++||+ .+.+
T Consensus 160 q~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 160 QQQRLCIARALATNPDVL--------LMDEPT--SALDPVSTR--KIEELILKL--------KEKYTIVIVTHNMQQAAR 219 (259)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEEcCHHHHHH
Confidence 999999999999999999 555556 777755443 234444433 236899999995 7789
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+|||+ ++|++|++++.|++++++..+.
T Consensus 220 ~~d~i-~~l~~G~i~~~g~~~~~~~~~~ 246 (259)
T PRK14274 220 VSDQT-AFFYMGELVECNDTNKMFSNPD 246 (259)
T ss_pred hCCEE-EEEECCEEEEECCHHHHhhCCC
Confidence 99999 5699999999999999987654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=331.96 Aligned_cols=270 Identities=14% Similarity=0.152 Sum_probs=212.9
Q ss_pred CCcCCCCCCcchhhhhHHHHHHHHHHH-----------HHHH---------------------------------HHhcc
Q 015952 25 FDIPLLSGDDEGSRDSWDSLVDQRRRD-----------AVFR---------------------------------EVLQS 60 (397)
Q Consensus 25 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---------------------------------~~~~~ 60 (397)
=||||-.||-.--.+.++.+.+++++. .-+. .++++
T Consensus 181 ADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred ecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 399999999998888888888877651 1111 12222
Q ss_pred ccc-----cccCCCCeEEEEeEEEEECCCc-----eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCC
Q 015952 61 YDQ-----LRTRIGSLTDAKNKILSYTPGA-----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130 (397)
Q Consensus 61 ~~~-----~~~~~~~~lel~nvs~~Y~~~~-----~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~ 130 (397)
+|. .+.+..++++.++|.+.|+-.. .+..+.|+++|||++++|+.++|||+||||||||-++|.+|++
T Consensus 261 eP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-- 338 (534)
T COG4172 261 EPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-- 338 (534)
T ss_pred CCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--
Confidence 221 1112456899999999994211 1234566999999999999999999999999999999999997
Q ss_pred CCCCcccEEEECce-------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHC
Q 015952 131 KFASERAQVTYNSS-------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGV 191 (397)
Q Consensus 131 ~~~p~~G~I~i~G~-------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~v 191 (397)
+. |+|.|+|+ ++++-+|||+|.- ..++.+||.+.+.-++. +..+..+++.++|+.+
T Consensus 339 ---s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg-SLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 339 ---SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG-SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred ---cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCC-CCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 55 99999998 4789999999852 11346899999988765 5677888999999999
Q ss_pred CCc--ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 192 RHG--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 192 gl~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
||+ ...+||++.|||||||+|||||++.+|+++ +||||| |+||...+. +.++.++++ +.+
T Consensus 414 GLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i--------~LDEPT--SALD~SVQa--Qvv~LLr~L------Q~k 475 (534)
T COG4172 414 GLDPATRNRYPHEFSGGQRQRIAIARALILKPELI--------LLDEPT--SALDRSVQA--QVLDLLRDL------QQK 475 (534)
T ss_pred CCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEE--------EecCCc--hHhhHHHHH--HHHHHHHHH------HHH
Confidence 994 358899999999999999999999999999 777778 888854433 445555543 356
Q ss_pred CCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHHH
Q 015952 270 DDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (397)
Q Consensus 270 ~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i 322 (397)
.|.+-++|||| .+..+||+| ++|++|+||+.|+.+++|++|.++ +|...+
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~v-iVm~~GkiVE~G~~~~if~~P~~~--YT~~L~ 527 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRV-IVMRDGKIVEQGPTEAVFANPQHE--YTRALL 527 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceE-EEEeCCEEeeeCCHHHHhcCCCcH--HHHHHH
Confidence 89999999997 889999999 579999999999999999999753 455444
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=320.72 Aligned_cols=208 Identities=18% Similarity=0.279 Sum_probs=166.5
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc---cCCCCCCC--cccEEEECce
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl---~~~~~~~p--~~G~I~i~G~ 144 (397)
++++++|+++.|+. ..+ |+|+||+|++||+++|+||||||||||+|+|+|+ .+ | ++|+|.++|.
T Consensus 2 ~~l~~~~~~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGD-FHA-----LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECC-EeE-----EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 58999999999963 334 9999999999999999999999999999999997 44 4 5899999996
Q ss_pred e------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCC
Q 015952 145 V------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSD 202 (397)
Q Consensus 145 ~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~ 202 (397)
. +.++|+||++.++. .|+.||+.++.. ..+...+.+.++++.+++.. ....+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14245 71 NIYDKGVQVDELRKNVGMVFQRPNPFP----KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFA 146 (250)
T ss_pred ecccccccHHHHhhheEEEecCCccCc----ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCccc
Confidence 2 35999999988764 599999986532 12234456788999999832 3566788
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+
T Consensus 147 LS~G~~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiiivtH~~~ 206 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVL--------LMDEPA--SALDPISTA--KVEELIHEL--------KKDYTIVIVTHNMQ 206 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEeCCHH
Confidence 9999999999999999999999 555556 777755444 234444332 347899999995
Q ss_pred hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
++.++|||+ ++|++|++++.|++++++..+..
T Consensus 207 ~~~~~~d~v-~~l~~G~~~~~~~~~~~~~~~~~ 238 (250)
T PRK14245 207 QAARVSDKT-AFFYMGEMVEYDDTKKIFTNPEK 238 (250)
T ss_pred HHHhhCCEE-EEEECCEEEEECCHHHHhcCCCC
Confidence 778999999 56999999999999999876543
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=322.67 Aligned_cols=215 Identities=20% Similarity=0.299 Sum_probs=169.0
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
...+++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 10 ~~~~l~~~~l~~~~~~-~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGK-FHA-----LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCC-eEE-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3568999999999963 334 99999999999999999999999999999999998611001589999999852
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSG 205 (397)
+.++|+||++.++. .|+.+|+.++.. ......+++.++++.+++. ....++.+|||
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 159 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFP----MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSG 159 (260)
T ss_pred ccccchHHHhcceEEEecCCccCc----CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCH
Confidence 36999999987764 699999987532 2233446778899999973 23566889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.
T Consensus 160 Gq~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~--------~~~~tiii~sH~~~~~~ 219 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVL--------LLDEPC--SALDPISTG--RIEELITEL--------KQDYTVVIVTHNMQQAA 219 (260)
T ss_pred HHHHHHHHHHHHHCCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEeCCHHHHH
Confidence 9999999999999999999 555555 777754433 234444333 246899999995 777
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.+|||+ ++|++|++++.|++++++..+..
T Consensus 220 ~~~d~i-~~l~~G~i~~~g~~~~~~~~~~~ 248 (260)
T PRK10744 220 RCSDYT-AFMYLGELIEFGNTDTIFTKPAK 248 (260)
T ss_pred HhCCEE-EEEECCEEEEeCCHHHHHhCCCc
Confidence 899999 57999999999999998766543
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=318.42 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=161.3
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++||++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHI-----LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLPP 69 (230)
T ss_pred CEEEeEEEEeCC-eEE-----ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCCH
Confidence 578999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCC-hhhHHHHHHHHHHHCC-Cc-ccccCCCCCChHHHHHHHHHHHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-SDNINMIKLWIMEGVR-HG-ELVIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-~~~~~~~~~~ll~~vg-l~-~~~~~~~~lSGGqkQRvaIArAL 217 (397)
+.++|+||++.++. .+|+.+|+.++... .....+.+.++++.++ +. ....++.+||||||||++|||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 70 HERARAGIAYVPQGREIFP---RLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred HHHHHhCeEEeccCCcccC---CCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 35999999998776 68999999875331 1112334566777776 43 34667889999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL 295 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~ 295 (397)
+.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+||++ +++++
T Consensus 147 ~~~p~il--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~~~~~d~v-~~l~~ 207 (230)
T TIGR03410 147 VTRPKLL--------LLDEPT--EGIQPSIIK--DIGRVIRRLR------AEGGMAILLVEQYLDFARELADRY-YVMER 207 (230)
T ss_pred hcCCCEE--------EecCCc--ccCCHHHHH--HHHHHHHHHH------HcCCcEEEEEeCCHHHHHHhCCEE-EEEEC
Confidence 9999999 555555 777755443 2334443321 1248999999995 788899999 56999
Q ss_pred CEEeeeCCcccc
Q 015952 296 GELLGIPPAKQI 307 (397)
Q Consensus 296 G~iv~~g~~~el 307 (397)
|++++.|+++++
T Consensus 208 g~i~~~~~~~~~ 219 (230)
T TIGR03410 208 GRVVASGAGDEL 219 (230)
T ss_pred CEEEEECCHHHc
Confidence 999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=323.98 Aligned_cols=214 Identities=18% Similarity=0.267 Sum_probs=168.5
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++|+++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|++++....|++|+|.++|..
T Consensus 16 ~~~~l~~~nl~~~~~~-~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE-KQA-----LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC-EEE-----EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 4568999999999963 334 99999999999999999999999999999999999711001389999999952
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCcc-----cccCCCCCC
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGE-----LVIRRSDSS 204 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lS 204 (397)
+.++|+||++.++. .|+.||+.++.. ......+.+.++++.+++.. ....+.+||
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 165 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFP----KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLS 165 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCC----CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence 35899999988775 499999987532 12234556788999999942 345688899
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ .+
T Consensus 166 gGq~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~l--------~~~~tiiivtH~~~~~ 225 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVI--------LMDEPC--SALDPIATA--KVEELIDEL--------RQNYTIVIVTHSMQQA 225 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH--------hcCCeEEEEEcCHHHH
Confidence 99999999999999999999 555555 777755443 233444332 236899999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
..+|||+ ++|++|+++..|++++++..+.
T Consensus 226 ~~~~d~v-~~l~~G~i~~~g~~~~~~~~~~ 254 (267)
T PRK14235 226 ARVSQRT-AFFHLGNLVEVGDTEKMFTNPD 254 (267)
T ss_pred HhhCCEE-EEEECCEEEEeCCHHHHHhCCC
Confidence 8999999 5699999999999998876554
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=302.62 Aligned_cols=207 Identities=16% Similarity=0.167 Sum_probs=176.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
.|+++|+.+.|+... + |-||+|+.++||.+.++||||+|||||+|.++-|.- |.+|+..+.|.
T Consensus 2 sirv~~in~~yg~~q-~-----lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s~ 70 (242)
T COG4161 2 SIQLNGINCFYGAHQ-A-----LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred ceEEcccccccccch-h-----eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEeccccccccc
Confidence 378999999996432 3 999999999999999999999999999999999999 99999999886
Q ss_pred ----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 145 ----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
++++|+|||.|++.+ ++||.+|+.-... ++++.+.++.++|+++.|. ...+.|..|||||+
T Consensus 71 ~~~~k~i~~lr~~vgmvfqqy~lwp---hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqq 147 (242)
T COG4161 71 TPSDKAIRDLRRNVGMVFQQYNLWP---HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQ 147 (242)
T ss_pred CccHHHHHHHHHhhhhhhhhhccCc---hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchh
Confidence 578999999999987 8999999765422 6777888999999999994 45677999999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~a 286 (397)
|||||||||+.+|++| ++|||| ++||+.... +..+.|+++ ...|.|-++||| +.+.+.|
T Consensus 148 qrvaiaralmmkpqvl--------lfdept--aaldpeita--qvv~iikel-------~~tgitqvivthev~va~k~a 208 (242)
T COG4161 148 QRVAIARALMMEPQVL--------LFDEPT--AALDPEITA--QIVSIIKEL-------AETGITQVIVTHEVEVARKTA 208 (242)
T ss_pred hhHHHHHHHhcCCcEE--------eecCcc--cccCHHHHH--HHHHHHHHH-------HhcCceEEEEEeehhHHHhhh
Confidence 9999999999999999 555556 777765443 456667665 257999999999 4889999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.|| |+|++|+|++.|++.. |.+|.
T Consensus 209 s~v-vyme~g~ive~g~a~~-ft~p~ 232 (242)
T COG4161 209 SRV-VYMENGHIVEQGDASC-FTEPQ 232 (242)
T ss_pred hhe-EeeecCeeEeecchhh-ccCcc
Confidence 999 6899999999999754 55654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=326.87 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=166.3
Q ss_pred CeEEEEeEEEEECCC-----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 70 SLTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~-----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+|++++|++++|+.+ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~ 72 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA-----LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGL 72 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE
Confidence 589999999999632 224 999999999999999999999999999999999999 99999999996
Q ss_pred e-----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 145 V-----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ~-----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
. +.+||+||++.... +..++.+|+.++.. ...+.++++.++++.+|+. ....++.+||||||
T Consensus 73 ~i~~~~~~~~~~~~i~~v~q~~~~~~--~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 73 DTSDEENLWDIRNKAGMVFQNPDNQI--VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQK 150 (280)
T ss_pred eccccccHHHHhhheEEEecChhhhh--ccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 2 36899999974211 13589999988643 2344556788999999994 45677899999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++. .|
T Consensus 151 qrv~laral~~~p~ll--------llDEPt--~gLD~~~~~--~l~~~l~~l~------~~~g~tillvtH~~~~~~-~~ 211 (280)
T PRK13633 151 QRVAIAGILAMRPECI--------IFDEPT--AMLDPSGRR--EVVNTIKELN------KKYGITIILITHYMEEAV-EA 211 (280)
T ss_pred HHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecChHHHh-cC
Confidence 9999999999999999 455555 677755444 3334443331 2358999999995 554 49
Q ss_pred cEEEEEeeCCEEeeeCCcccccCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
||+ ++|++|+++..|++++++..
T Consensus 212 d~v-~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 212 DRI-IVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CEE-EEEECCEEEEecCHHHHhcC
Confidence 999 56999999999999888754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=325.96 Aligned_cols=209 Identities=14% Similarity=0.182 Sum_probs=165.8
Q ss_pred CCeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.++++++|++++|++ +..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~ 74 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNA-----LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS 74 (271)
T ss_pred ceEEEEEeEEEEcCCCCccc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Confidence 468999999999953 2334 999999999999999999999999999999999999 99999999996
Q ss_pred -------eCcEEEEecCCC-CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 145 -------VGDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 145 -------~~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
++.+||+||++. .+. .+|+.||+.++.. ...+....+.++++.+++. ....++.+||||||||+
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (271)
T PRK13632 75 KENLKEIRKKIGIIFQNPDNQFI---GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRV 151 (271)
T ss_pred cCCHHHHhcceEEEEeCHHHhcC---cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHH
Confidence 246999999973 333 4799999987532 2233455678899999994 45677899999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++||| |||| ++||..... ...+.+.++. .+.++|||++||+ ++ ..||++
T Consensus 152 ~laral~~~p~lllL--------DEP~--~gLD~~~~~--~l~~~l~~~~------~~~~~tiii~sH~~~~~-~~~d~v 212 (271)
T PRK13632 152 AIASVLALNPEIIIF--------DEST--SMLDPKGKR--EIKKIMVDLR------KTRKKTLISITHDMDEA-ILADKV 212 (271)
T ss_pred HHHHHHHcCCCEEEE--------eCCc--ccCCHHHHH--HHHHHHHHHH------HhcCcEEEEEEechhHH-hhCCEE
Confidence 999999999999955 5555 677754433 3344444331 1235899999995 55 589999
Q ss_pred EEEeeCCEEeeeCCcccccCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~ 310 (397)
++|++|+++..|++++++..
T Consensus 213 -~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 213 -IVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred -EEEECCEEEEecCHHHHhcC
Confidence 56999999999998877654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=313.74 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=156.4
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (213)
T cd03262 1 IEIKNLHKSFGD-FHV-----LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDDKK 69 (213)
T ss_pred CEEEEEEEEECC-eEe-----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCccch
Confidence 478999999964 334 999999999999999999999999999999999999 999999999962
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
+.++|++|++.++. .+|+.||+.++.. ......+.+.++++.+++. .....+.+|||||+||++|
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~---~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 70 NINELRQKVGMVFQQFNLFP---HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred hHHHHHhcceEEecccccCC---CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHH
Confidence 35899999988775 5899999987531 2233456678899999994 4567788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||..... ...+.+.++ .+.|+|||++||+ ++.++||++ +
T Consensus 147 a~al~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~-------~~~~~tvi~~sh~~~~~~~~~d~i-~ 206 (213)
T cd03262 147 ARALAMNPKVM--------LFDEPT--SALDPELVG--EVLDVMKDL-------AEEGMTMVVVTHEMGFAREVADRV-I 206 (213)
T ss_pred HHHHhcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEE-E
Confidence 99999999999 555555 777754433 233444333 1358999999995 778999999 5
Q ss_pred EeeCCEE
Q 015952 292 RTYLGEL 298 (397)
Q Consensus 292 ~l~~G~i 298 (397)
+|++|++
T Consensus 207 ~l~~g~i 213 (213)
T cd03262 207 FMDDGRI 213 (213)
T ss_pred EEeCCcC
Confidence 6999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=315.53 Aligned_cols=200 Identities=17% Similarity=0.237 Sum_probs=155.4
Q ss_pred eEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
+++++||+++|++. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~ 70 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA-----LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLL 70 (228)
T ss_pred CeEEEeeeEeccCCCcceee-----ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcc
Confidence 57899999999643 134 999999999999999999999999999999999999 999999999962
Q ss_pred -----------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC-----ChhhHHHH-HHHHHHHCCCc-c-cccCCCCCC
Q 015952 146 -----------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD-----ASDNINMI-KLWIMEGVRHG-E-LVIRRSDSS 204 (397)
Q Consensus 146 -----------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~-----~~~~~~~~-~~~ll~~vgl~-~-~~~~~~~lS 204 (397)
+.++|+||++. ++. .+|+.+|+.++.. ........ +.++++.+++. . ...++.+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~---~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 147 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNP---RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELS 147 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCC---cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcC
Confidence 36999999983 443 5899999976422 11122222 35788999993 3 466788999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ .+
T Consensus 148 ~G~~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 148 GGQRQRVAIARALALNPKLL--------IADEPT--SALDVSVQA--QILDLLKKLQ------EELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEE--------EecCCC--CCCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHH
Confidence 99999999999999999999 555555 677754433 3344443331 1238999999995 67
Q ss_pred HccccEEEEEeeCCEEeeeC
Q 015952 283 LSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g 302 (397)
..+||++ ++|++|+++..|
T Consensus 210 ~~~~d~i-~~l~~G~i~~~g 228 (228)
T cd03257 210 AKIADRV-AVMYAGKIVEEG 228 (228)
T ss_pred HHhcCeE-EEEeCCEEEecC
Confidence 7799999 579999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=350.68 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=171.1
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++|+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 8 ~~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 76 (510)
T PRK15439 8 APPLLCARSISKQYSG-VEV-----LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCA 76 (510)
T ss_pred CCceEEEEeEEEEeCC-cee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 3458999999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
..+||+||++.++. .+|+.||+.++.......++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 153 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFP---NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR 153 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCC---CCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence 35999999988776 68999999987543334456788899999994 456778899999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+|||| ++|
T Consensus 154 aL~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tiiivtHd~~~~~~~~d~i-~~l 213 (510)
T PRK15439 154 GLMRDSRIL--------ILDEPT--ASLTPAETE--RLFSRIREL-------LAQGVGIVFISHKLPEIRQLADRI-SVM 213 (510)
T ss_pred HHHcCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 999999999 555556 777755443 233444333 2358999999995 788999999 579
Q ss_pred eCCEEeeeCCccccc
Q 015952 294 YLGELLGIPPAKQIF 308 (397)
Q Consensus 294 ~~G~iv~~g~~~el~ 308 (397)
++|+++..|+++++.
T Consensus 214 ~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 214 RDGTIALSGKTADLS 228 (510)
T ss_pred ECCEEEEecChHHcC
Confidence 999999999987764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=326.08 Aligned_cols=206 Identities=15% Similarity=0.172 Sum_probs=165.4
Q ss_pred eEEEEeEEEEECCC----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
.|+++||+++|+++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRA-----LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCCccccce-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEc
Confidence 38999999999642 124 999999999999999999999999999999999999 999999999962
Q ss_pred -------------CcEEEEecCC--CCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-c-cccCCCCCC
Q 015952 146 -------------GDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-E-LVIRRSDSS 204 (397)
Q Consensus 146 -------------~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lS 204 (397)
+.|+|+||++ .++. .|+.||+.++.. ..++..+.+.++++.+++. . ...++.+||
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 147 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE----ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELS 147 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 3589999997 3443 699999987532 2334455678899999995 3 466788999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++
T Consensus 148 gG~~qrv~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKIL--------VLDEPT--AGLDPKGRK--ELMTLFKKL-------HQSGMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeccHHHH
Confidence 99999999999999999999 555556 777755433 233444332 1358999999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
..+||++ ++|++|+++..|++++++..
T Consensus 209 ~~~~d~i-~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 209 ANYADFV-YVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHhCCEE-EEEECCEEEEeCCHHHHhcC
Confidence 8899999 57999999999998887654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=324.84 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=167.1
Q ss_pred CCeEEEEeEEEEECCC--------ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 69 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~--------~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
.+||+++||+++|+.. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~ 71 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA-----VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELL 71 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce-----eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEE
Confidence 3589999999999521 223 999999999999999999999999999999999999 9999999
Q ss_pred ECcee----------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-c-cccCCC
Q 015952 141 YNSSV----------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-E-LVIRRS 201 (397)
Q Consensus 141 i~G~~----------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~-~~~~~~ 201 (397)
++|.. +.++|+||++. +++ .+|+.+++.+... ......+.+.++++.+++. . ...++.
T Consensus 72 ~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 72 IDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP---RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred ECCEECCCCchhhHhccEEEEecCchhhcCc---chhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCch
Confidence 99962 36999999974 333 5789998875322 1233445678899999993 3 355678
Q ss_pred CCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-
Q 015952 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG- 280 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~- 280 (397)
+||||||||++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+
T Consensus 149 ~LS~G~~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tviivsH~~ 210 (267)
T PRK15112 149 MLAPGQKQRLGLARALILRPKVI--------IADEAL--ASLDMSMRS--QLINLMLELQ------EKQGISYIYVTQHL 210 (267)
T ss_pred hcCHHHHHHHHHHHHHHhCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HHcCcEEEEEeCCH
Confidence 99999999999999999999999 555555 777754433 2334443331 1248999999995
Q ss_pred -hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 281 -DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 281 -~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++..+|||+ ++|++|++++.|++++++..+.
T Consensus 211 ~~~~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 242 (267)
T PRK15112 211 GMMKHISDQV-LVMHQGEVVERGSTADVLASPL 242 (267)
T ss_pred HHHHHhcCEE-EEEECCEEEecCCHHHHhcCCC
Confidence 778899999 5699999999999998877654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=319.80 Aligned_cols=210 Identities=19% Similarity=0.238 Sum_probs=165.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC---cccEEEECcee-
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSV- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p---~~G~I~i~G~~- 145 (397)
++++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+.+.. | ++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~-~~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYYNK-KKA-----LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEECC-eee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 58999999999963 334 99999999999999999999999999999999984300 5 59999999862
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCC
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSS 204 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lS 204 (397)
+.++|+||++.+++ .|+.||+.++.. ......+.+.++++.+++. .....+.+||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 150 (252)
T PRK14239 75 YSPRTDTVDLRKEIGMVFQQPNPFP----MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLS 150 (252)
T ss_pred cCcccchHhhhhcEEEEecCCccCc----CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCC
Confidence 35999999988764 699999986532 1223345677889999873 2356788999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++
T Consensus 151 ~G~~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sH~~~~~ 210 (252)
T PRK14239 151 GGQQQRVCIARVLATSPKII--------LLDEPT--SALDPISAG--KIEETLLGL--------KDDYTMLLVTRSMQQA 210 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEE--------EEcCCc--cccCHHHHH--HHHHHHHHH--------hhCCeEEEEECCHHHH
Confidence 99999999999999999999 455555 667654433 233444332 236899999995 78
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.++|||+ ++|++|++++.|++++++..|..
T Consensus 211 ~~~~d~i-~~l~~G~i~~~g~~~~~~~~~~~ 240 (252)
T PRK14239 211 SRISDRT-GFFLDGDLIEYNDTKQMFMNPKH 240 (252)
T ss_pred HHhCCEE-EEEECCEEEEeCCHHHHHhCCCC
Confidence 8999999 56999999999999999877653
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=326.04 Aligned_cols=210 Identities=15% Similarity=0.188 Sum_probs=166.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+|+++||+++|++.....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~~ 75 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAEN 75 (277)
T ss_pred eEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECCcCC
Confidence 7999999999963221112 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCC-CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 146 -----GDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 146 -----~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
+.+||+||++. .+. ..|+.||+.++.. ......+++.++++.+++. ....++.+||||||||++||
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 76 VWNLRRKIGMVFQNPDNQFV---GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred HHHHhcceEEEEECHHHhhc---cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 45999999974 333 4799999987532 2334456778999999994 45667889999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++ ..||++ ++
T Consensus 153 raL~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tiil~sH~~~~~-~~~d~i-~~ 212 (277)
T PRK13642 153 GIIALRPEII--------ILDEST--SMLDPTGRQ--EIMRVIHEIK------EKYQLTVLSITHDLDEA-ASSDRI-LV 212 (277)
T ss_pred HHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHH-HhCCEE-EE
Confidence 9999999999 555555 677755443 3334443331 2348999999995 55 469999 56
Q ss_pred eeCCEEeeeCCcccccCCC
Q 015952 293 TYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~ 311 (397)
|++|++++.|++++++..+
T Consensus 213 l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 213 MKAGEIIKEAAPSELFATS 231 (277)
T ss_pred EECCEEEEeCCHHHHhcCH
Confidence 9999999999998887643
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=318.90 Aligned_cols=212 Identities=18% Similarity=0.303 Sum_probs=167.9
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC--CCCCCCcccEEEECcee--
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE--NDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~--~~~~~p~~G~I~i~G~~-- 145 (397)
..++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ ++. |++|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~--~~~G~v~~~g~~i~ 74 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NHA-----VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSA--RVTGKILLDDTDIY 74 (252)
T ss_pred cEEEEEEEEEEeCC-eeE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCC--CCceEEEECCEEcc
Confidence 36899999999963 334 999999999999999999999999999999999985 211 368999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSG 205 (397)
+.++|+||++.++. .+|+.||+.++.. ......+++.++++.+++.. ....+.+|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14256 75 DRGVDPVSIRRRVGMVFQKPNPFP---AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG 151 (252)
T ss_pred cccCChHHhhccEEEEecCCCCCC---cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence 35999999988776 5899999986432 12334456788899999832 2456788999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.
T Consensus 152 G~~qrl~laral~~~p~ll--------llDEP~--~gLD~~~~~--~l~~~l~~~--------~~~~tiiivsH~~~~~~ 211 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVI--------LMDEPA--SALDPISTL--KIEELIEEL--------KEKYTIIIVTHNMQQAA 211 (252)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH--------HhCCcEEEEECCHHHHH
Confidence 9999999999999999999 555555 777755443 334444433 235799999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
++|||+ ++|++|++++.|++++++..+.+
T Consensus 212 ~~~d~i-~~l~~G~i~~~~~~~~~~~~~~~ 240 (252)
T PRK14256 212 RVSDYT-AFFYMGDLVECGETKKIFTTPEK 240 (252)
T ss_pred hhCCEE-EEEECCEEEEeCCHHHHHhCCCc
Confidence 999999 56999999999999999876654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=321.09 Aligned_cols=212 Identities=18% Similarity=0.237 Sum_probs=165.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 4 ~l~i~~v~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHA-----VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC-Eee-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999963 334 99999999999999999999999999999999999721001279999999952
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLRN 208 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGqk 208 (397)
+.++|+||++.++. .+|+.||+.++.. ......+.+.++++.+++. .....+.+||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~---~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFP---TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred cChHHHhcceEEEccccccCC---CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 35999999988776 6899999986532 2233456778889999883 23566789999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++||+ |||| ++||..... ...+.+.++ .+++|||++||+ ++.++|
T Consensus 155 qrv~laral~~~p~llll--------DEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tviivsH~~~~~~~~~ 214 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLM--------DEPC--SALDPISTL--AIEDLINEL--------KQDYTIVIVTHNMQQAARVS 214 (258)
T ss_pred HHHHHHHHHhcCCCEEEE--------cCCC--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEecCHHHHHHhC
Confidence 999999999999999955 5555 667644333 233333332 246899999995 778999
Q ss_pred cEEEEEee------CCEEeeeCCcccccCCCC
Q 015952 287 DRARIRTY------LGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 287 DrI~v~l~------~G~iv~~g~~~el~~~~~ 312 (397)
||++ +|+ +|++++.|++++++..+.
T Consensus 215 d~i~-~l~~~~~~~~g~i~~~~~~~~~~~~~~ 245 (258)
T PRK14241 215 DQTA-FFNLEATGKPGRLVEIDDTEKIFSNPT 245 (258)
T ss_pred CEEE-EEecccCCCCceEEecCCHHHHHhCcC
Confidence 9994 586 899999999998876544
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=327.62 Aligned_cols=209 Identities=15% Similarity=0.151 Sum_probs=166.4
Q ss_pred CeEEEEeEEEEECCCc----eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee
Q 015952 70 SLTDAKNKILSYTPGA----WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~----~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~ 145 (397)
..|+++|++++|++.. .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA-----LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce-----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEE
Confidence 4689999999996432 24 999999999999999999999999999999999999 999999999852
Q ss_pred ---------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cc-cccCCCC
Q 015952 146 ---------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GE-LVIRRSD 202 (397)
Q Consensus 146 ---------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~-~~~~~~~ 202 (397)
+.++|++|++. ++ ..|+.||+.++.. ......+++.++++.+++ .. ...++.+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~----~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~ 150 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLF----QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFE 150 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhh----hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhh
Confidence 35899999974 33 3599999987532 223334567789999999 33 4667889
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
||||||||++|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+
T Consensus 151 LS~Gq~qrv~laral~~~p~lL--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tiiiisH~~~ 212 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTL--------VLDEPT--GGLDPKGEE--DFINLFERLN------KEYKKRIIMVTHNMD 212 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHH
Confidence 9999999999999999999999 555556 777765443 3344444331 1248999999995
Q ss_pred hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
++.++|||+ ++|++|++++.|++++++..+
T Consensus 213 ~~~~~~d~i-~~l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 213 QVLRIADEV-IVMHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHhCCEE-EEEECCEEEEeCCHHHHhcCH
Confidence 778999999 579999999999988876543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=320.89 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=165.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc---ccEEEECcee-
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSV- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~---~G~I~i~G~~- 145 (397)
++|+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 3 TIIRVEKLAKTFNQ-HQA-----LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTV 71 (262)
T ss_pred cEEEEeeEEEEeCC-eEE-----EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEec
Confidence 58999999999963 334 999999999999999999999999999999999999 65 5999999962
Q ss_pred --------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC------------ChhhHHHHHHHHHHHCCCc-cccc
Q 015952 146 --------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------------ASDNINMIKLWIMEGVRHG-ELVI 198 (397)
Q Consensus 146 --------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------------~~~~~~~~~~~ll~~vgl~-~~~~ 198 (397)
+.++|+||++.+++ .+|+.+|+.++.. .....+.++.++++.+++. ...+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 148 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVN---RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ 148 (262)
T ss_pred ccccccchhHHHHHhheEEEcccccccc---CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC
Confidence 25899999988776 6899999987532 0123345778899999994 4567
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
.+.+||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++|
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~g~tvii~t 210 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVI--------LADEPI--ASLDPESAR--IVMDTLRDIN------QNDGITVVVTL 210 (262)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEE--------EecCcc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEe
Confidence 78999999999999999999999999 555555 777754433 2334443331 13489999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
|+ .+..+|||+ ++|++|+++..|+++++
T Consensus 211 H~~~~~~~~~d~i-~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 211 HQVDYALRYCERI-VALRQGHVFYDGSSQQF 240 (262)
T ss_pred CCHHHHHHhCCEE-EEEECCEEEEeCCHHHh
Confidence 95 678999999 56999999999998774
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=320.38 Aligned_cols=204 Identities=16% Similarity=0.143 Sum_probs=165.2
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 l~~~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~ 70 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLI-----VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLHGLSR 70 (256)
T ss_pred ceEEeEEEEECC-EEE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcccCCH
Confidence 689999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
+.++|++|++.++. .+|+.||+.++.. ...+..+++.++++.+++. ....++.+||||||||++
T Consensus 71 ~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 71 RARARRVALVEQDSDTAV---PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVH 147 (256)
T ss_pred HHHhhheEEecccCccCC---CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 35999999986654 5899999987531 1123345678899999994 356778899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|+++ +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.++||||
T Consensus 148 la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~~~d~i- 207 (256)
T TIGR03873 148 VARALAQEPKLL--------LLDEPT--NHLDVRAQL--ETLALVREL-------AATGVTVVAALHDLNLAASYCDHV- 207 (256)
T ss_pred HHHHHhcCCCEE--------EEcCcc--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHHHhCCEE-
Confidence 999999999999 555556 777754433 233444333 1358899999995 777999999
Q ss_pred EEeeCCEEeeeCCcccccC
Q 015952 291 IRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|++++.|++++++.
T Consensus 208 ~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 208 VVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEEeCCCEEEecCHHHhhC
Confidence 5799999999999877653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=319.40 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=166.5
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 5 ~~l~~~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQLR 73 (258)
T ss_pred ceEEEeeeEEEcCC-cee-----eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcccccc
Confidence 57999999999964 335 999999999999999999999999999999999999 999999999953
Q ss_pred ---------------CcEEEEecCCC--CCCCCCCccHHHHHhcCC-----CChhhHHHHHHHHHHHCCCc--ccccCCC
Q 015952 146 ---------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSD-----DASDNINMIKLWIMEGVRHG--ELVIRRS 201 (397)
Q Consensus 146 ---------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~-----~~~~~~~~~~~~ll~~vgl~--~~~~~~~ 201 (397)
+.++|+||++. ++. .+++.+|+.+.. .........+.++++.+++. .....+.
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK11701 74 DLYALSEAERRRLLRTEWGFVHQHPRDGLRM---QVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPT 150 (258)
T ss_pred ccccCCHHHHHHHhhcceEEEeeCcccccCc---cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCc
Confidence 24999999974 333 468888876432 12234456678899999994 3467789
Q ss_pred CCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-
Q 015952 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG- 280 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~- 280 (397)
+||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|.|||++||+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~isH~~ 212 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLV--------FMDEPT--GGLDVSVQA--RLLDLLRGLV------RELGLAVVIVTHDL 212 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HhcCcEEEEEeCCH
Confidence 99999999999999999999999 555555 677754433 2334443321 2348999999995
Q ss_pred -hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 281 -DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 281 -~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+..+||++ ++|++|++++.|++++++..+.
T Consensus 213 ~~~~~~~d~i-~~l~~g~i~~~~~~~~~~~~~~ 244 (258)
T PRK11701 213 AVARLLAHRL-LVMKQGRVVESGLTDQVLDDPQ 244 (258)
T ss_pred HHHHHhcCEE-EEEECCEEEEeCCHHHHhcCCC
Confidence 777899999 5799999999999999876654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=313.16 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=152.9
Q ss_pred EEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 73 DAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 73 el~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
+++|++++|+++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 1 ~~~~l~~~~~~~~~~i-----l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 1 ELKNLSFSYPDGARPA-----LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred CceeEEEecCCCCeee-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcccCCH
Confidence 478999999642 334 999999999999999999999999999999999999 99999999996
Q ss_pred ---eCcEEEEecCCCC-CCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ---VGDGTYFLQEYTI-PRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ---~~~ig~v~Q~~~l-~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.++|+||++.. +. .+|+.||+.++.. ......+.+.++++.+++. ...+++.+||||||||++|||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 71 KELRRKVGLVFQNPDDQFF---GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred HHHHhhceEEecChhhhcC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 2469999999742 32 4799999977532 2233445678899999994 456778999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+||++ ++|
T Consensus 148 al~~~p~ll--------llDEPt--~~LD~~~~~--~~~~~l~~~-------~~~~~tvi~~sH~~~~~~~~~d~i-~~l 207 (211)
T cd03225 148 VLAMDPDIL--------LLDEPT--AGLDPAGRR--ELLELLKKL-------KAEGKTIIIVTHDLDLLLELADRV-IVL 207 (211)
T ss_pred HHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 999999999 555556 777755444 334444433 1348999999995 778889999 569
Q ss_pred eCCE
Q 015952 294 YLGE 297 (397)
Q Consensus 294 ~~G~ 297 (397)
++|+
T Consensus 208 ~~G~ 211 (211)
T cd03225 208 EDGK 211 (211)
T ss_pred eCCC
Confidence 8884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=360.03 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=173.7
Q ss_pred CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 68 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
.+++|+++|++++|+.+. ...+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~ 80 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLL 80 (623)
T ss_pred CCceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEe
Confidence 467999999999995321 1123 999999999999999999999999999999999999 99999999873
Q ss_pred ----------------------eCcEEEEecCC--CCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc
Q 015952 145 ----------------------VGDGTYFLQEY--TIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE 195 (397)
Q Consensus 145 ----------------------~~~ig~v~Q~~--~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~ 195 (397)
+++||||||++ .+++ .+||.||+.++.. ...+.++++.++++.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 157 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP---VFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE 157 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 13699999997 4554 5899999987532 23345577889999999942
Q ss_pred ----cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 196 ----LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 196 ----~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
...++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|
T Consensus 158 ~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lL--------llDEPt--~~LD~~~~~--~l~~ll~~l~------~~~g 219 (623)
T PRK10261 158 AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL--------IADEPT--TALDVTIQA--QILQLIKVLQ------KEMS 219 (623)
T ss_pred hhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEE--------EEeCCC--CccCHHHHH--HHHHHHHHHH------HhcC
Confidence 46789999999999999999999999999 555556 777755443 3444444431 2348
Q ss_pred ceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 272 KPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 272 ~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|||+|||| .+.++|||| ++|++|++++.|++++++..+.+
T Consensus 220 ~tvi~itHdl~~~~~~adri-~vl~~G~i~~~g~~~~~~~~~~~ 262 (623)
T PRK10261 220 MGVIFITHDMGVVAEIADRV-LVMYQGEAVETGSVEQIFHAPQH 262 (623)
T ss_pred CEEEEEcCCHHHHHHhCCEE-EEeeCCeecccCCHHHhhcCCCC
Confidence 999999995 788999999 57999999999999998876543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=353.70 Aligned_cols=239 Identities=12% Similarity=0.133 Sum_probs=186.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....+..++..+.+.+|+.++++.+++.+.. ...-++++||+++|++. .++ |+|+||+|++||+++|
T Consensus 289 ~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~inl~i~~G~~v~I 363 (571)
T TIGR02203 289 SLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPA-----LDSISLVIEPGETVAL 363 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCcc-----ccCeeEEecCCCEEEE
Confidence 44556777888888999999999765543321 12359999999999643 334 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+|+||||||||+++|+|+++ |++|+|.++|. ++.++|++|++.+|. -|++||+.++... +
T Consensus 364 vG~sGsGKSTLl~lL~gl~~-----~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~----~Ti~~Ni~~~~~~-~ 433 (571)
T TIGR02203 364 VGRSGSGKSTLVNLIPRFYE-----PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN----DTIANNIAYGRTE-Q 433 (571)
T ss_pred ECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc----ccHHHHHhcCCCC-C
Confidence 99999999999999999999 99999999997 367999999999997 5999999987521 1
Q ss_pred hHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
...+.+.++++.+++++ .......||||||||++||||++.+|+++ +||||| ++||..
T Consensus 434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~il--------lLDEpt--s~LD~~ 503 (571)
T TIGR02203 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL--------ILDEAT--SALDNE 503 (571)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE--------EEeCcc--ccCCHH
Confidence 12234555666666522 12234568999999999999999999999 556666 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+.. ...+.+.+ ..+++|+|+|||+ ...+.||+| ++|++|++++.|++++++..
T Consensus 504 ~~~--~i~~~L~~--------~~~~~tiIiitH~~~~~~~~D~i-i~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 504 SER--LVQAALER--------LMQGRTTLVIAHRLSTIEKADRI-VVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHH--HHHHHHHH--------HhCCCEEEEEehhhHHHHhCCEE-EEEeCCEEEeeCCHHHHHHc
Confidence 554 23333332 2467999999996 778889999 57999999999999998754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=323.06 Aligned_cols=209 Identities=16% Similarity=0.193 Sum_probs=166.5
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.++++++|++++|++. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~-----l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~ 74 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFT-----LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAIT 74 (269)
T ss_pred CceEEEEEEEEEcCCCCCcc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 4589999999999643 224 999999999999999999999999999999999999 99999999996
Q ss_pred -------eCcEEEEecCCC-CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 145 -------VGDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 145 -------~~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
++.++|+||++. ++. ..++.+|+.++.. ..+...+.+.++++.+++. ....++.+||||||||+
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (269)
T PRK13648 75 DDNFEKLRKHIGIVFQNPDNQFV---GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV 151 (269)
T ss_pred cCCHHHHHhheeEEEeChHHhcc---cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH
Confidence 246999999974 443 4789999887632 2333455678899999994 45677889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++. .|||+
T Consensus 152 ~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~~------~~~~~tiiivtH~~~~~~-~~d~i 212 (269)
T PRK13648 152 AIAGVLALNPSVI--------ILDEAT--SMLDPDARQ--NLLDLVRKVK------SEHNITIISITHDLSEAM-EADHV 212 (269)
T ss_pred HHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCchHHh-cCCEE
Confidence 9999999999999 555555 777755443 2334443321 1348999999995 555 59999
Q ss_pred EEEeeCCEEeeeCCcccccCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~ 310 (397)
++|++|++++.|+++++...
T Consensus 213 -~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 213 -IVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred -EEEECCEEEEecCHHHHhcC
Confidence 56999999999999887654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=317.75 Aligned_cols=213 Identities=18% Similarity=0.260 Sum_probs=166.5
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
.+|+++||++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 2 ~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQA-----LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEECC-cee-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 46899999999963 334 99999999999999999999999999999999997611000279999999862
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLR 207 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGq 207 (397)
+.++|+||++.++. +|+.+|+.++.. .....++.+.++++.+++. ....++.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~----~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPFP----MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQ 151 (250)
T ss_pred ccchHHHhccEEEEecCCccCc----ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHH
Confidence 35899999987664 699999987532 1223456677888888873 2355678899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
|||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ .+.++
T Consensus 152 ~qrv~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14240 152 QQRLCIARALAVEPEVL--------LMDEPT--SALDPISTL--KIEELIQEL--------KKDYTIVIVTHNMQQASRI 211 (250)
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEEeCHHHHHhh
Confidence 99999999999999999 555556 777755443 233333332 247899999995 68899
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
|||+ ++|++|+++..|++++++..+.+
T Consensus 212 ~d~v-~~l~~G~i~~~~~~~~~~~~~~~ 238 (250)
T PRK14240 212 SDKT-AFFLNGEIVEFGDTVDLFTNPKD 238 (250)
T ss_pred CCEE-EEEECCEEEEeCCHHHHHhCCCC
Confidence 9999 57999999999999988766543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=317.01 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=160.3
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc--CCCCCCCcccEEEECcee----
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~--~~~~~~p~~G~I~i~G~~---- 145 (397)
|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|++ + |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~~ 69 (243)
T TIGR01978 1 LKIKDLHVSVED-KEI-----LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLEL 69 (243)
T ss_pred CeEeeEEEEECC-EEE-----EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCCC
Confidence 578999999963 334 99999999999999999999999999999999994 7 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----------ChhhHHHHHHHHHHHCCCc-cc-ccCCC-CCC
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----------ASDNINMIKLWIMEGVRHG-EL-VIRRS-DSS 204 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----------~~~~~~~~~~~ll~~vgl~-~~-~~~~~-~lS 204 (397)
..++|++|++.++. .+|+.+|+.+... ...+..+.+.++++.+++. .. .+++. +||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 146 (243)
T TIGR01978 70 EPDERARAGLFLAFQYPEEIP---GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFS 146 (243)
T ss_pred CHHHhhccceEeeeccccccC---CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcC
Confidence 23899999998876 6899999876421 1122345678899999995 33 44555 499
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ .+
T Consensus 147 ~G~~qrl~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 147 GGEKKRNEILQMALLEPKLA--------ILDEID--SGLDIDALK--IVAEGINRL-------REPDRSFLIITHYQRLL 207 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEE--------EecCCc--ccCCHHHHH--HHHHHHHHH-------HHCCcEEEEEEecHHHH
Confidence 99999999999999999999 555556 777755443 334444333 1358999999995 66
Q ss_pred Hcc-ccEEEEEeeCCEEeeeCCccccc
Q 015952 283 LSL-TDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 283 ~~~-aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
..+ ||++ ++|++|++++.|+++++.
T Consensus 208 ~~~~~d~i-~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 208 NYIKPDYV-HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HhhcCCeE-EEEeCCEEEEecCHHHhc
Confidence 777 8999 569999999999887543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=347.72 Aligned_cols=251 Identities=14% Similarity=0.096 Sum_probs=187.4
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhcc------------------------------c
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQS------------------------------Y 61 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------------------------------~ 61 (397)
+==|||||++||++....+.+.+.+.+.. ...+.++.+. .
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 241 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGRE 241 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHHHHHHHHhCcc
Confidence 33489999999999999998888776432 1111111110 0
Q ss_pred cc--cc----cCCCCeEEEEeEEEEECC--CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCC
Q 015952 62 DQ--LR----TRIGSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133 (397)
Q Consensus 62 ~~--~~----~~~~~~lel~nvs~~Y~~--~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~ 133 (397)
.. .+ .....+|+++|++++|+. +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~----- 311 (500)
T TIGR02633 242 ITSLYPHEPHEIGDVILEARNLTCWDVINPHRKR-----VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP----- 311 (500)
T ss_pred ccccccccccCCCCceEEEeCCcccccccccccc-----cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----
Confidence 00 00 012347999999999942 2224 999999999999999999999999999999999998
Q ss_pred C-cccEEEECcee-----------CcEEEEecCC---CCCCCCCCccHHHHHhcCCC---------ChhhHHHHHHHHHH
Q 015952 134 S-ERAQVTYNSSV-----------GDGTYFLQEY---TIPRGSNSFSLYDTRSLSDD---------ASDNINMIKLWIME 189 (397)
Q Consensus 134 p-~~G~I~i~G~~-----------~~ig~v~Q~~---~l~~~~~~ltv~eni~~~~~---------~~~~~~~~~~~ll~ 189 (397)
| ++|+|.++|+. +++||+||++ .+++ .+|+.+|+.++.. .....++.+.++++
T Consensus 312 p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~---~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 388 (500)
T TIGR02633 312 GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP---ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQ 388 (500)
T ss_pred CCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC---CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHH
Confidence 7 89999999852 4589999996 3554 6899999987531 11223456788999
Q ss_pred HCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc
Q 015952 190 GVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS 267 (397)
Q Consensus 190 ~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~ 267 (397)
.+++. . ..+++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++
T Consensus 389 ~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l------- 449 (500)
T TIGR02633 389 RLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVL--------ILDEPT--RGVDVGAKY--EIYKLINQL------- 449 (500)
T ss_pred hcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEE--------EEcCCC--CCcCHhHHH--HHHHHHHHH-------
Confidence 99994 3 46778999999999999999999999999 555556 777755443 233344333
Q ss_pred ccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcc
Q 015952 268 FRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 268 ~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~ 305 (397)
.++|.|||++||| ++.++|||+ ++|++|+++.+.+..
T Consensus 450 ~~~g~tviivsHd~~~~~~~~d~v-~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 450 AQEGVAIIVVSSELAEVLGLSDRV-LVIGEGKLKGDFVNH 488 (500)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEEccc
Confidence 2358999999995 888999999 569999999876543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=317.69 Aligned_cols=212 Identities=18% Similarity=0.275 Sum_probs=166.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 1 ~~~l~~~~l~~~~~~-~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 1 EPIIEIENFSAYYGE-KKA-----VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred CceEEEEeeEEEeCC-cee-----EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 358999999999963 334 99999999999999999999999999999999998721000289999999952
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGG 206 (397)
+.++|+||++.++. .|++||+.++.. .....++.+.++++.+++.. ...++.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP----MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc----ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 46999999988764 799999987532 12234456778889998832 35667889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ .+..
T Consensus 151 q~qr~~la~al~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tili~sH~~~~~~~ 210 (250)
T PRK14262 151 QQQRLCIARALAVEPEVI--------LLDEPT--SALDPIATQ--RIEKLLEEL--------SENYTIVIVTHNIGQAIR 210 (250)
T ss_pred HHHHHHHHHHHhCCCCEE--------EEeCCc--cccCHHHHH--HHHHHHHHH--------hcCcEEEEEeCCHHHHHH
Confidence 999999999999999999 555555 777754433 233444332 246899999995 6889
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
+|||+ ++|++|+++..|+++++...+
T Consensus 211 ~~d~i-~~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14262 211 IADYI-AFMYRGELIEYGPTREIVERP 236 (250)
T ss_pred hCCEE-EEEECCEEEEecCHHHHHhCC
Confidence 99999 569999999999998887654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=320.50 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=167.1
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+.+.....|++|+|.++|..
T Consensus 18 ~~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGE-KRA-----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCC-cee-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 3568999999999963 335 99999999999999999999999999999999985300001589999999852
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSG 205 (397)
+.++|+||++.+++ .|++||+.++.. .....++.+.++++.+++. ...+++.+|||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 167 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFP----KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG 167 (268)
T ss_pred cccccHHHHhccEEEEecCCccCc----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH
Confidence 36999999988775 499999987532 1122345567788888873 23566889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.
T Consensus 168 Gq~qrl~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~tH~~~~~~ 227 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVL--------LLDEPA--SALDPISNA--KIEELITEL--------KEEYSIIIVTHNMQQAL 227 (268)
T ss_pred HHHHHHHHHHHHhCCCCEE--------EEcCCC--cccCHHHHH--HHHHHHHHH--------hcCCEEEEEEeCHHHHH
Confidence 9999999999999999999 555555 777755443 233444332 236899999995 688
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.+|||+ ++|++|++++.|++++++..+.+
T Consensus 228 ~~~d~v-~~l~~G~i~~~~~~~~~~~~~~~ 256 (268)
T PRK14248 228 RVSDRT-AFFLNGDLVEYDQTEQIFTSPKQ 256 (268)
T ss_pred HhCCEE-EEEECCEEEEeCCHHHHHhCCCC
Confidence 999999 57999999999999998876654
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=321.93 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=162.1
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--------------eCcEEEEecCCCCCCC
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--------------VGDGTYFLQEYTIPRG 160 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--------------~~~ig~v~Q~~~l~~~ 160 (397)
+++|+.+.-.++||.|+||||||||+|+|+||.+ |+.|.|.+||. +++||||||+..||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFp- 89 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFP- 89 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEeecccCCcccChhhheeeeEeecccccc-
Confidence 5899998867999999999999999999999999 99999999998 478999999999998
Q ss_pred CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhh
Q 015952 161 SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 239 (397)
Q Consensus 161 ~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~ 239 (397)
++||+.|+.|+.... .....+++.+.+|++++ .++|..||||+||||||+|||+..|++|||||| .+-||+|..
T Consensus 90 --H~tVrgNL~YG~~~~--~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP-LaSLD~~RK 164 (352)
T COG4148 90 --HYTVRGNLRYGMWKS--MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP-LASLDLPRK 164 (352)
T ss_pred --ceEEecchhhhhccc--chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc-hhhcccchh
Confidence 999999999998633 23456678889999664 778999999999999999999999999999999 666777762
Q ss_pred hccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 240 LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 240 ~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++ .+..+.++. .+-+..|++||| ++++++||+| |+|++|++.+.|..++++..+.
T Consensus 165 --------~E---ilpylERL~------~e~~IPIlYVSHS~~Ev~RLAd~v-V~le~GkV~A~g~~e~v~~~~~ 221 (352)
T COG4148 165 --------RE---ILPYLERLR------DEINIPILYVSHSLDEVLRLADRV-VVLENGKVKASGPLEEVWGSPD 221 (352)
T ss_pred --------hH---HHHHHHHHH------HhcCCCEEEEecCHHHHHhhhheE-EEecCCeEEecCcHHHHhcCcc
Confidence 22 333333331 245789999999 6999999999 6799999999999999998874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=310.06 Aligned_cols=197 Identities=14% Similarity=0.142 Sum_probs=158.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++||+++|+ . . ++++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ~~~~~l~~~~~--~-~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 67 (213)
T TIGR01277 1 LALDKVRYEYE--H-L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTGLAP 67 (213)
T ss_pred CeEEeeeEEeC--C-c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccCCh
Confidence 47899999995 2 3 789999999999999999999999999999999999 999999999972
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.++. .+|+.||+.+... .....+..+.++++.+++. ...+.+.+||||||||++|||||+
T Consensus 68 ~~~~i~~v~q~~~~~~---~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 68 YQRPVSMLFQENNLFA---HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV 144 (213)
T ss_pred hccceEEEeccCccCC---CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 46999999998876 6899999976432 1222345677899999994 456678899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|+++ +||||| ++||..... ...+.+.++. .+.|.|||++||+ ++..+||++ ++|++|
T Consensus 145 ~~p~ll--------llDEPt--~~LD~~~~~--~~~~~l~~~~------~~~~~tii~vsh~~~~~~~~~d~v-~~l~~g 205 (213)
T TIGR01277 145 RPNPIL--------LLDEPF--SALDPLLRE--EMLALVKQLC------SERQRTLLMVTHHLSDARAIASQI-AVVSQG 205 (213)
T ss_pred cCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHhhcCeE-EEEECC
Confidence 999999 555555 677754443 3344444331 1348999999995 678899999 569999
Q ss_pred EEeeeCC
Q 015952 297 ELLGIPP 303 (397)
Q Consensus 297 ~iv~~g~ 303 (397)
++++.|.
T Consensus 206 ~i~~~~~ 212 (213)
T TIGR01277 206 KIKVVSD 212 (213)
T ss_pred eEEEecC
Confidence 9998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=317.66 Aligned_cols=214 Identities=18% Similarity=0.247 Sum_probs=167.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++++++|++++|+. ..+ |+|+||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|..
T Consensus 2 ~~~l~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE-KQA-----LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC-eee-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 468999999999963 334 99999999999999999999999999999999998811000279999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGG 206 (397)
+.++|+||++.++. +|+.||+.++.. ......+++.++++.+++. ....++.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP----MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC----CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 35999999988764 799999987532 1223445677889999873 235668899999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|++|+|||| | ++||..... ...+.+.++ .+++|||++||+ ++..
T Consensus 152 ~~qrv~laral~~~p~llllDEP--------~--~~LD~~~~~--~l~~~L~~~--------~~~~tiiivsH~~~~~~~ 211 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEP--------T--SALDPISTL--KIEDLMVEL--------KKEYTIVIVTHNMQQASR 211 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC--------c--ccCCHHHHH--HHHHHHHHH--------HhCCeEEEEEcCHHHHHH
Confidence 99999999999999999955554 5 677754433 233444333 235899999995 7789
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|||+ ++|++|++++.|++++++..+.+
T Consensus 212 ~~d~v-~~l~~G~i~~~~~~~~~~~~~~~ 239 (251)
T PRK14270 212 VSDYT-AFFLMGDLIEFNKTEKIFLEPQK 239 (251)
T ss_pred hcCEE-EEEECCeEEEeCCHHHHhcCCCC
Confidence 99999 56999999999999998877654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=330.64 Aligned_cols=217 Identities=16% Similarity=0.244 Sum_probs=170.7
Q ss_pred CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
...+|+++|++++|..+ ..+ |+|+||+|++||+++|+||||||||||+++|+|+.+.....|++|+|.++|..
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~-----L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHV-----LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred cCceEEEEeeEEEecCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 34589999999999632 234 99999999999999999999999999999999998621111579999999972
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----C-hhhHHHHHHHHHHHCCCc-----ccccCCCCCC
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----A-SDNINMIKLWIMEGVRHG-----ELVIRRSDSS 204 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~-~~~~~~~~~~ll~~vgl~-----~~~~~~~~lS 204 (397)
+.++|+||++.++. .|++||+.|+.. . .+...+.+.++++.+++. ....++..||
T Consensus 152 ~~~~~~~~~lr~~i~~v~q~~~~~~----~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 152 RSKKISSLELRTRIGMVFQKPTPFE----MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALS 227 (329)
T ss_pred cccccchHhhhccEEEEecCCccCC----CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCC
Confidence 46999999998875 799999987532 1 122234467788888872 2356788999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|+|| +||||| ++||+.... ...+.+.++ .+++|||+|||+ .+
T Consensus 228 gGqkqRl~LARAl~~~p~Il--------LLDEPt--s~LD~~~~~--~i~~~i~~l--------~~~~Tii~iTH~l~~i 287 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVL--------LMDEPT--SALDPIATA--KIEELILEL--------KKKYSIIIVTHSMAQA 287 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHH
Confidence 99999999999999999999 555555 777755444 233444333 246899999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
.++|||| ++|++|++++.|++++++..|.++
T Consensus 288 ~~~~Dri-ivl~~G~i~e~g~~~~l~~~~~~~ 318 (329)
T PRK14257 288 QRISDET-VFFYQGWIEEAGETKTIFIHPKNK 318 (329)
T ss_pred HHhCCEE-EEEECCEEEEeCCHHHHhcCCCcH
Confidence 8889999 579999999999999999888753
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=320.41 Aligned_cols=214 Identities=19% Similarity=0.252 Sum_probs=168.8
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
...+|+++||+++|+. ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 17 ~~~~l~~~nl~~~~~~-~~i-----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK-KEA-----IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC-eee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3458999999999953 334 99999999999999999999999999999999999621111489999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSG 205 (397)
+.++|+||++.++. .|+.||+.++.. .......++.++++.+++. .....+.+|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~ 166 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA----KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSG 166 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc----ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCH
Confidence 35999999988775 599999987532 2223456677889999883 23566889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||+||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++.|||++||+ ++.
T Consensus 167 G~~qrl~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~tH~~~~~~ 226 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDIL--------LMDEPA--SALDPISTM--QLEETMFEL--------KKNYTIIIVTHNMQQAA 226 (267)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEecCHHHHH
Confidence 9999999999999999999 555555 777754433 333444332 246899999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|||+ ++|++|++++.|++++++..+.
T Consensus 227 ~~~d~i-~~l~~G~i~~~g~~~~~~~~~~ 254 (267)
T PRK14237 227 RASDYT-AFFYLGDLIEYDKTRNIFTNPK 254 (267)
T ss_pred HhcCEE-EEEECCEEEEeCCHHHHhcCCC
Confidence 999999 5699999999999999876654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=316.35 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=165.1
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~l~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGG-GKG-----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCC-ceE-----eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 57999999999963 334 999999999999999999999999999999999999 999999998742
Q ss_pred ---------------CcEEEEecCCCCCCCCCCccHHHHHhcCC-----CChhhHHHHHHHHHHHCCCc--ccccCCCCC
Q 015952 146 ---------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD-----DASDNINMIKLWIMEGVRHG--ELVIRRSDS 203 (397)
Q Consensus 146 ---------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~-----~~~~~~~~~~~~ll~~vgl~--~~~~~~~~l 203 (397)
+.++|++|++.... ...+++.+|+.+.. .........+.++++.+++. .....+..|
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGL-RMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred ccccCCHHHHHHhhhcceEEEEeCccccc-CccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc
Confidence 24899999975311 12468888875421 11223446778899999994 346678899
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--h
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--D 281 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~ 281 (397)
||||||||+|||||+.+|++||+ |||| ++||+.... ...+.+.++. .+.|.|||+|||+ .
T Consensus 150 SgG~~qrv~laral~~~p~vlll--------DEP~--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFM--------DEPT--GGLDVSVQA--RLLDLLRGLV------RDLGLAVIIVTHDLGV 211 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEE--------cCCC--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHH
Confidence 99999999999999999999955 5555 677754443 2334443321 1358999999995 7
Q ss_pred HHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 282 ~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+..+||++ ++|++|++++.|++++++..+.
T Consensus 212 ~~~~~d~~-~~l~~G~i~~~~~~~~~~~~~~ 241 (253)
T TIGR02323 212 ARLLAQRL-LVMQQGRVVESGLTDQVLDDPQ 241 (253)
T ss_pred HHHhcCEE-EEEECCEEEEECCHHHHhcCCC
Confidence 77899999 5799999999999988876553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=313.76 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=160.5
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~l~~v~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~~~~ 69 (223)
T TIGR03740 1 LETKNLSKRFGK-QTA-----VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTRKDL 69 (223)
T ss_pred CEEEeEEEEECC-EEE-----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecccccc
Confidence 578999999963 334 999999999999999999999999999999999999 999999999972
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
+.++|+||++.++. .+|++||+.+...........+.++++.+++.+ ...++.+|||||+||++||||++.+|++|
T Consensus 70 ~~~~~~~q~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 70 HKIGSLIESPPLYE---NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred ccEEEEcCCCCccc---cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 47999999988765 579999997643211111345778899999954 46678899999999999999999999999
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeC
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g 302 (397)
++ |||| ++||..... ...+.+.++ .++|+|||++||+ ++..+|||+ ++|++|+++..|
T Consensus 147 ll--------DEP~--~~LD~~~~~--~l~~~L~~~-------~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g~i~~~~ 206 (223)
T TIGR03740 147 IL--------DEPT--NGLDPIGIQ--ELRELIRSF-------PEQGITVILSSHILSEVQQLADHI-GIISEGVLGYQG 206 (223)
T ss_pred EE--------CCCc--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEcCCHHHHHHhcCEE-EEEeCCEEEEec
Confidence 54 5555 677754433 233444332 1358899999995 777899999 569999999998
Q ss_pred Ccc
Q 015952 303 PAK 305 (397)
Q Consensus 303 ~~~ 305 (397)
++.
T Consensus 207 ~~~ 209 (223)
T TIGR03740 207 KIN 209 (223)
T ss_pred Chh
Confidence 874
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=348.92 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=168.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 72 (510)
T PRK09700 4 PYISMAGIGKSFGP-VHA-----LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNKL 72 (510)
T ss_pred ceEEEeeeEEEcCC-eEE-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCCC
Confidence 58999999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSL 206 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGG 206 (397)
+.+||+||++.++. .+|+.||+.++.. ...+..+++.++++.+++. ...+++.+||||
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 149 (510)
T PRK09700 73 DHKLAAQLGIGIIYQELSVID---ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS 149 (510)
T ss_pred CHHHHHHCCeEEEeecccccC---CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence 36999999988776 6899999987532 1123456788899999994 456678899999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||+|||+ .+..
T Consensus 150 ~~qrv~ia~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVI--------IMDEPT--SSLTNKEVD--YLFLIMNQL-------RKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999 555555 677754443 334444443 1358999999995 7889
Q ss_pred cccEEEEEeeCCEEeeeCCccccc
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
+|||+ ++|++|+++..|+++++.
T Consensus 211 ~~d~v-~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 211 ICDRY-TVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred hCCEE-EEEECCEEeeecchhhCC
Confidence 99999 579999999999887764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=343.82 Aligned_cols=236 Identities=13% Similarity=0.116 Sum_probs=186.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEE--EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEE
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTD--AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~le--l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
+.+..-.+...+.+.+..+++++...... ..+-++ ++|+++.|++++++ ++|+||++++|+.++||
T Consensus 279 s~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~-----l~~l~~t~~~g~~talv 353 (559)
T COG4988 279 SFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA-----LSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcc-----cCCceeEecCCcEEEEE
Confidence 34445555566778888888877663322 122344 45999999877644 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhh
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN 179 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~ 179 (397)
|+||||||||+++|+|+.+ |++|+|.+||. +++++||+|+|.+|. -|++||+.++....
T Consensus 354 G~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~----gTireNi~l~~~~~-- 422 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLA-----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA----GTIRENILLARPDA-- 422 (559)
T ss_pred CCCCCCHHHHHHHHhCcCC-----CCCceEEECCccccccCHHHHHhHeeeeCCCCcccc----ccHHHHhhccCCcC--
Confidence 9999999999999999999 99999999998 478999999999987 59999999986522
Q ss_pred HHHHHHHHHHHCCCccc-----------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 180 INMIKLWIMEGVRHGEL-----------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~~~-----------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
.++.+.++++..++.+. ......|||||+|||++||||+++++++ ++|||| +.||.+++
T Consensus 423 s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~--------llDEpT--A~LD~etE 492 (559)
T COG4988 423 SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL--------LLDEPT--AHLDAETE 492 (559)
T ss_pred CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE--------EecCCc--cCCCHhHH
Confidence 12345556666666322 2334557999999999999999999999 667777 89997776
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
. ..++.+.++ .+++|||+|||+ ....-||+| ++|++|++++.|++++++.+.
T Consensus 493 ~--~i~~~l~~l--------~~~ktvl~itHrl~~~~~~D~I-~vld~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 493 Q--IILQALQEL--------AKQKTVLVITHRLEDAADADRI-VVLDNGRLVEQGTHEELSEKQ 545 (559)
T ss_pred H--HHHHHHHHH--------HhCCeEEEEEcChHHHhcCCEE-EEecCCceeccCCHHHHhhcC
Confidence 5 234444333 467999999996 778889999 579999999999999997654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=317.10 Aligned_cols=213 Identities=17% Similarity=0.225 Sum_probs=166.0
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+.
T Consensus 3 ~~l~~~~l~~~~~~-~~~-----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN-YEA-----LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC-eee-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 37999999999963 334 99999999999999999999999999999999998611000379999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLR 207 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGq 207 (397)
+.++|++|++.++. .|+.||+.++.. ..+...+.+.++++.+++. ....++.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 152 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP----FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQ 152 (251)
T ss_pred cchHHHhhccEEEEecCCccCC----CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHH
Confidence 35999999988774 699999987532 1222345677889999883 2355678999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
|||++|||||+.+|++|||| ||| ++||+.... ...+.+.++ .+++|||++||+ ++.++
T Consensus 153 ~qr~~laral~~~p~llllD--------EP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiiiisH~~~~~~~~ 212 (251)
T PRK14251 153 QQRICIARALAVRPKVVLLD--------EPT--SALDPISSS--EIEETLMEL--------KHQYTFIMVTHNLQQAGRI 212 (251)
T ss_pred HHHHHHHHHHhcCCCEEEec--------CCC--ccCCHHHHH--HHHHHHHHH--------HcCCeEEEEECCHHHHHhh
Confidence 99999999999999999555 555 677754433 233444332 246899999995 77899
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
|||+ ++|++|+++..|++++++..+.+
T Consensus 213 ~d~i-~~l~~G~i~~~~~~~~~~~~~~~ 239 (251)
T PRK14251 213 SDQT-AFLMNGDLIEAGPTEEMFIAPKK 239 (251)
T ss_pred cCEE-EEEECCEEEEeCCHHHHHhCCCC
Confidence 9999 57999999999999988766553
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=347.50 Aligned_cols=205 Identities=12% Similarity=0.159 Sum_probs=168.0
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
+||+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 3 ~~i~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 71 (501)
T PRK10762 3 ALLQLKGIDKAFPG-VKA-----LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTFN 71 (501)
T ss_pred ceEEEeeeEEEeCC-eEE-----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 58999999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNR 209 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQ 209 (397)
+.+||+||++.++. .+|++||+.++.. ...+.++++.++++.+++.+ ..+++.+|||||||
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 148 (501)
T PRK10762 72 GPKSSQEAGIGIIHQELNLIP---QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ 148 (501)
T ss_pred CHHHHHhCCEEEEEcchhccC---CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 46999999987776 6899999987632 12233456788999999954 46678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+.|+|||++||+ ++..+||
T Consensus 149 rv~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~~~~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 149 MVEIAKVLSFESKVI--------IMDEPT--DALTDTETE--SLFRVIREL-------KSQGRGIVYISHRLKEIFEICD 209 (501)
T ss_pred HHHHHHHHhcCCCEE--------EEeCCc--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999 555556 777755443 333444433 1358999999995 7889999
Q ss_pred EEEEEeeCCEEeeeCCccccc
Q 015952 288 RARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~ 308 (397)
|| ++|++|+++..|+++++.
T Consensus 210 ~i-~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 210 DV-TVFRDGQFIAEREVADLT 229 (501)
T ss_pred EE-EEEeCCEEEEecCcCcCC
Confidence 99 579999999999887653
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=352.15 Aligned_cols=237 Identities=12% Similarity=0.189 Sum_probs=181.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccc--C------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRT--R------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
....+..+...+.+.+++.++++.+++.+. . ....++++||+|+|+++.++ |+|+||++++|++++|
T Consensus 292 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~i-----L~~inl~i~~G~~v~I 366 (588)
T PRK13657 292 VVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-----VEDVSFEAKPGQTVAI 366 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCce-----ecceeEEECCCCEEEE
Confidence 344555666677788888888876443211 1 12359999999999644445 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. ++.|+|++|++.+|. -|++||+.++.....
T Consensus 367 vG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~----~Ti~~Ni~~~~~~~~ 437 (588)
T PRK13657 367 VGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN----RSIEDNIRVGRPDAT 437 (588)
T ss_pred ECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc----ccHHHHHhcCCCCCC
Confidence 99999999999999999999 99999999997 468999999999986 699999999753111
Q ss_pred hHHHHHHHHHHHCCCc-----------c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHG-----------E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~-----------~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
++.+.++++.+++. . .......||||||||++|||||+++|+++ +||||| ++||+.
T Consensus 438 --d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il--------iLDEpt--s~LD~~ 505 (588)
T PRK13657 438 --DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL--------ILDEAT--SALDVE 505 (588)
T ss_pred --HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--cCCCHH
Confidence 12233344444431 1 22345678999999999999999999999 556666 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+.. ...+.+.+ ..+++|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 506 t~~--~i~~~l~~--------~~~~~tvIiitHr~~~~~~~D~i-i~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 506 TEA--KVKAALDE--------LMKGRTTFIIAHRLSTVRNADRI-LVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHH--HHHHHHHH--------HhcCCEEEEEEecHHHHHhCCEE-EEEECCEEEEeCCHHHHHHC
Confidence 544 23333332 2358999999996 777889999 57999999999999998754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=348.20 Aligned_cols=205 Identities=14% Similarity=0.206 Sum_probs=167.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC--cccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p--~~G~I~i~G~~- 145 (397)
++||+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|..
T Consensus 3 ~~~l~~~nl~~~~~~-~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 3 EYLLEMKNITKTFGG-VKA-----LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEEL 71 (506)
T ss_pred CceEEEeeeEEEeCC-eEe-----ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEEC
Confidence 358999999999963 334 999999999999999999999999999999999998 7 89999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLR 207 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGq 207 (397)
+.+||+||++.++. .+|+.||+.++.. ..+...+++.++++.+++. ...+++.+|||||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVK---ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQ 148 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCC---CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 45999999988776 6899999988642 1223446688899999994 4566788999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+
T Consensus 149 kqrv~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~~~~~tvi~~tH~~~~~~~~ 209 (506)
T PRK13549 149 QQLVEIAKALNKQARLL--------ILDEPT--ASLTESETA--VLLDIIRDL-------KAHGIACIYISHKLNEVKAI 209 (506)
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCcHHHHHHh
Confidence 99999999999999999 555555 677754433 334444433 1358999999995 78899
Q ss_pred ccEEEEEeeCCEEeeeCCcccc
Q 015952 286 TDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el 307 (397)
|||+ ++|++|+++..|+++++
T Consensus 210 ~d~v-~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 210 SDTI-CVIRDGRHIGTRPAAGM 230 (506)
T ss_pred cCEE-EEEECCEEeeecccccC
Confidence 9999 57999999999988765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=316.08 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=166.9
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-----ccEEEECce
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-----~G~I~i~G~ 144 (397)
++++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~-~~i-----l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 3 PKIKIRGVNFFYHK-HQV-----LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNE 71 (251)
T ss_pred ceEEEEEEEEEECC-eeE-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCE
Confidence 57999999999963 335 999999999999999999999999999999999999 75 699999986
Q ss_pred e------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCC
Q 015952 145 V------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSD 202 (397)
Q Consensus 145 ~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~ 202 (397)
. +.++|+||++.+++ .|+.||+.++.. ..+...+.+.++++.+++. ....++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 147 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFP----KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA 147 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCc----CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCccc
Confidence 2 35999999998775 499999987532 1122345567778888863 23567889
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+
T Consensus 148 LS~Gq~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tilivsh~~~ 207 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVI--------LMDEPC--SALDPVSTM--RIEELMQEL--------KQNYTIAIVTHNMQ 207 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHH
Confidence 9999999999999999999999 555555 677754433 233333332 347899999995
Q ss_pred hHHccccEEEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
.+..+||++ ++|++|++++.|++++++..|...
T Consensus 208 ~~~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~~~ 240 (251)
T PRK14249 208 QAARASDWT-GFLLTGDLVEYGRTGEIFSRPRDK 240 (251)
T ss_pred HHHhhCCEE-EEEeCCeEEEeCCHHHHHhCCCCh
Confidence 888999999 569999999999999988776643
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=319.77 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=167.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+|+++||+++|+. ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 11 ~~~l~i~nl~~~~~~-~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT-FEA-----VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC-EEE-----EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 468999999999963 334 99999999999999999999999999999999998721111489999999862
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLRN 208 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGqk 208 (397)
+.++|+||++.++. .|+.||+.++.. ......+.+.++++.+++. ....++.+||||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFP----KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQ 160 (269)
T ss_pred ccCCHHHHhhceEEEccCCccch----hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHH
Confidence 35999999988775 499999987643 1122345567788888762 23556788999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++ ++++|||++||+ ++..+|
T Consensus 161 qrl~laral~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~l~~~--------~~~~tiiivtH~~~~~~~~~ 220 (269)
T PRK14259 161 QRLCIARTIAIEPEVI--------LMDEPC--SALDPISTL--KIEETMHEL--------KKNFTIVIVTHNMQQAVRVS 220 (269)
T ss_pred HHHHHHHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHHhc
Confidence 9999999999999999 555556 788855443 233444332 346899999995 888999
Q ss_pred cEEEEEeeC-----------CEEeeeCCcccccCCCCC
Q 015952 287 DRARIRTYL-----------GELLGIPPAKQIFDIPES 313 (397)
Q Consensus 287 DrI~v~l~~-----------G~iv~~g~~~el~~~~~~ 313 (397)
||+ ++|++ |++++.|++++++..+.+
T Consensus 221 d~i-~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 257 (269)
T PRK14259 221 DMT-AFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQ 257 (269)
T ss_pred CEE-EEEeccccccccccccceEEEeCCHHHHHhCcCC
Confidence 999 56986 679999999999876653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=322.39 Aligned_cols=215 Identities=20% Similarity=0.266 Sum_probs=167.7
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 36 ~~~~l~i~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGD-EQA-----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECC-Eee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4578999999999963 334 99999999999999999999999999999999998611001489999999862
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLR 207 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGq 207 (397)
+.++|+||++.++. .|+.||+.+... ......+++.++++.+++. ....++.+|||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFP----KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred ccccchHhhhccEEEEecCCccCc----CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 36899999987765 499999986532 1123455678899999883 2356788999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .++.|||++||+ ++..+
T Consensus 186 ~qrv~LAraL~~~p~lL--------LLDEPt--s~LD~~~~~--~l~~~L~~~--------~~~~tiii~tH~~~~i~~~ 245 (285)
T PRK14254 186 QQRLCIARAIAPDPEVI--------LMDEPA--SALDPVATS--KIEDLIEEL--------AEEYTVVIVTHNMQQAARI 245 (285)
T ss_pred HHHHHHHHHHHcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHhh
Confidence 99999999999999999 555555 777755443 233444333 224799999995 77889
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|||++++|++|++++.|++++++..+.
T Consensus 246 ~dri~v~l~~G~i~~~g~~~~~~~~~~ 272 (285)
T PRK14254 246 SDKTAVFLTGGELVEFDDTDKIFENPE 272 (285)
T ss_pred cCEEEEEeeCCEEEEeCCHHHHHhCcC
Confidence 999745579999999999988876544
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=345.06 Aligned_cols=247 Identities=13% Similarity=0.100 Sum_probs=184.9
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhccccc----------------------------
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQSYDQ---------------------------- 63 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---------------------------- 63 (397)
+==|||||++||+.....+++.+...+.. .+.+.++.+..-.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 241 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRK 241 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCC
Confidence 33489999999999999998888776432 1111111110000
Q ss_pred -------ccc-CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc
Q 015952 64 -------LRT-RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135 (397)
Q Consensus 64 -------~~~-~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~ 135 (397)
... ...++++++|+++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |+
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~l~~------~~-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~ 305 (501)
T PRK10762 242 LEDQYPRLDKAPGEVRLKVDNLSG------PG-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RT 305 (501)
T ss_pred ccccccccccCCCCcEEEEeCccc------CC-----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CC
Confidence 000 0124678888874 13 999999999999999999999999999999999999 99
Q ss_pred ccEEEECcee-----------CcEEEEecCC---CCCCCCCCccHHHHHhcCCC----------ChhhHHHHHHHHHHHC
Q 015952 136 RAQVTYNSSV-----------GDGTYFLQEY---TIPRGSNSFSLYDTRSLSDD----------ASDNINMIKLWIMEGV 191 (397)
Q Consensus 136 ~G~I~i~G~~-----------~~ig~v~Q~~---~l~~~~~~ltv~eni~~~~~----------~~~~~~~~~~~ll~~v 191 (397)
+|+|.++|+. +.+||+||++ .++. .+|+.+|+.++.. ...+.++.+.++++.+
T Consensus 306 ~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (501)
T PRK10762 306 SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL---GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF 382 (501)
T ss_pred ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC---CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc
Confidence 9999999952 3599999996 3444 6899999986421 1123345678899999
Q ss_pred CCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 192 RHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 192 gl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
++. . ..+++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+
T Consensus 383 ~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~ 443 (501)
T PRK10762 383 NIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL--------ILDEPT--RGVDVGAKK--EIYQLINQF-------KA 443 (501)
T ss_pred CCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEE--------EEcCCC--CCCCHhHHH--HHHHHHHHH-------HH
Confidence 993 3 56778899999999999999999999999 555555 777755443 334444433 13
Q ss_pred CCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 270 DDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 270 ~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+|+|||++||+ ++..+|||+ ++|++|+++..++++++
T Consensus 444 ~g~tviivtHd~~~~~~~~d~v-~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 444 EGLSIILVSSEMPEVLGMSDRI-LVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCEEEEEcCCHHHHHhhCCEE-EEEECCEEEEEeccccC
Confidence 58999999995 888999999 57999999999887654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=346.58 Aligned_cols=240 Identities=15% Similarity=0.204 Sum_probs=183.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC-----CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
......+..++..+.+.+|+.++++.+++.... ....++++|++|+|+++ .++ |+|+||+|++|+.++|
T Consensus 275 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~~~~~i~~G~~~~i 349 (544)
T TIGR01842 275 DGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPT-----LRGISFRLQAGEALAI 349 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEEcCCCEEEE
Confidence 344556677788888999999999765543211 12369999999999643 334 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--C
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--A 176 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~ 176 (397)
+||||||||||+++|+|+++ |++|+|.++|. ++.++|++|++.+++ .|++||+.++.. .
T Consensus 350 vG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~----~ti~~Ni~~~~~~~~ 420 (544)
T TIGR01842 350 IGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP----GTVAENIARFGENAD 420 (544)
T ss_pred ECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEehhhCCHHHHhhheEEecCCccccc----ccHHHHHhccCCCCC
Confidence 99999999999999999999 99999999997 357999999999986 599999986543 2
Q ss_pred hhhHHH-----HHHHHHHHC--CCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 177 SDNINM-----IKLWIMEGV--RHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 177 ~~~~~~-----~~~~ll~~v--gl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
.++..+ .+.+.++.+ |++ ....+...||||||||++|||||+++|++| +||||| ++||..+.
T Consensus 421 ~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~il--------ilDEpt--s~LD~~~~ 490 (544)
T TIGR01842 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLV--------VLDEPN--SNLDEEGE 490 (544)
T ss_pred HHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--cccCHHHH
Confidence 222211 123344444 332 223457789999999999999999999999 666666 77876544
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
. ...+.+.++ ..+|+|+|++||+ ...+.||+| ++|++|++++.|+++++.
T Consensus 491 ~--~i~~~l~~~-------~~~~~tvi~ith~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 491 Q--ALANAIKAL-------KARGITVVVITHRPSLLGCVDKI-LVLQDGRIARFGERDEVL 541 (544)
T ss_pred H--HHHHHHHHH-------hhCCCEEEEEeCCHHHHHhCCEE-EEEECCEEEeeCCHHHHh
Confidence 3 233333332 1358999999996 667789999 579999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=315.58 Aligned_cols=213 Identities=19% Similarity=0.245 Sum_probs=165.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
|++++++|+++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 1 ~~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 1 MNKFNIENLDLFYGE-NQA-----LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred CCeEEEeccEEEECC-eee-----eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 357999999999963 334 99999999999999999999999999999999999821111259999999952
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLR 207 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGq 207 (397)
+.++|+||++.++. .|+.||+.++.. ......+.+.++++.+++. .....+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~----~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP----MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc----ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 35999999988764 699999987532 1223345667788888873 2345678899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++..+
T Consensus 151 ~qrv~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~~~~ 210 (249)
T PRK14253 151 QQRLCIARTIAMEPDVI--------LMDEPT--SALDPIATH--KIEELMEEL--------KKNYTIVIVTHSMQQARRI 210 (249)
T ss_pred HHHHHHHHHHHcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEecCHHHHHHh
Confidence 99999999999999999 555555 777754433 233444332 235899999994 78899
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|||+ ++|++|++++.|+++++...+.
T Consensus 211 ~d~i-~~l~~G~i~~~g~~~~~~~~~~ 236 (249)
T PRK14253 211 SDRT-AFFLMGELVEHDDTQVIFSNPK 236 (249)
T ss_pred CCEE-EEEECCEEEEeCCHHHHHcCCC
Confidence 9999 5699999999999988876554
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=315.49 Aligned_cols=207 Identities=18% Similarity=0.304 Sum_probs=164.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-----ccEEEECcee
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-----~G~I~i~G~~ 145 (397)
+++++|++++|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|..
T Consensus 4 ~l~~~~l~~~~~-~~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQA-----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-----LTPGARVTGRILLDGQD 72 (252)
T ss_pred EEEEeeeEEEEC-CEEe-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceeEEECCEE
Confidence 789999999996 3334 999999999999999999999999999999999998 64 8999999962
Q ss_pred ------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCC
Q 015952 146 ------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDS 203 (397)
Q Consensus 146 ------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~l 203 (397)
+.++|+||++.++. .+|+.||+.++.. ..+...+.+.++++.+++. ....++.+|
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~---~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 149 (252)
T PRK14272 73 IYGPRVDPVAMRRRVGMVFQKPNPFP---TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGL 149 (252)
T ss_pred cccCccCHHHhhceeEEEeccCccCc---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccC
Confidence 25999999988776 5899999976432 1223345566777777652 235567889
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--h
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--D 281 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~ 281 (397)
|||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ .
T Consensus 150 S~G~~qrv~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~sH~~~~ 209 (252)
T PRK14272 150 SGGQQQRLCIARALAVEPEIL--------LMDEPT--SALDPASTA--RIEDLMTDL--------KKVTTIIIVTHNMHQ 209 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEeCCHHH
Confidence 999999999999999999999 555556 777754433 233333332 246899999995 7
Q ss_pred HHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 282 ~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+..+|||+ ++|++|++++.|++++++..+.
T Consensus 210 ~~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14272 210 AARVSDTT-SFFLVGDLVEHGPTDQLFTNPR 239 (252)
T ss_pred HHHhCCEE-EEEECCEEEEeCCHHHHHhCcC
Confidence 78899999 5799999999999999877654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=313.83 Aligned_cols=204 Identities=15% Similarity=0.192 Sum_probs=155.9
Q ss_pred EEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 72 lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++++|++++|+.+ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 1 ITFEHVRFRYKPDGPVI-----LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLALAD 70 (237)
T ss_pred CEEEEEEEecCCCCccc-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehHhcC
Confidence 4789999999643 234 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHH-----HHHHHHHHC--CCc-ccccCCCCCChHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINM-----IKLWIMEGV--RHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~-----~~~~ll~~v--gl~-~~~~~~~~lSGGqkQR 210 (397)
++.++|+||++.++. .|+.||+.++... ...... .+.++++.+ ++. ....++.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 71 PAWLRRQVGVVLQENVLFN----RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred HHHHhhcEEEEcCCchhcc----chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 246999999987764 6999999886431 111111 123344444 332 2345678999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
|+|||||+.+|++| +||||| ++||..... ...+.+.++ .+|+|||++||+ .....||++
T Consensus 147 v~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~sH~~~~~~~~d~v 206 (237)
T cd03252 147 IAIARALIHNPRIL--------IFDEAT--SALDYESEH--AIMRNMHDI--------CAGRTVIIIAHRLSTVKNADRI 206 (237)
T ss_pred HHHHHHHhhCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCCHHHHHhCCEE
Confidence 99999999999999 555555 677754443 233444332 248999999995 333569999
Q ss_pred EEEeeCCEEeeeCCcccccCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~ 310 (397)
++|++|+++..|++++++..
T Consensus 207 -~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 207 -IVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred -EEEECCEEEEEcCHHHHHhc
Confidence 57999999999998887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=319.94 Aligned_cols=206 Identities=13% Similarity=0.056 Sum_probs=164.0
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc--------ccEEEEC
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 142 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~--------~G~I~i~ 142 (397)
||+++|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~-~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRH-RAI-----LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECC-EeE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 5899999999953 335 999999999999999999999999999999999999 87 9999999
Q ss_pred cee----------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--------hhhHHHHHHHHHHHCCCc-ccccCCCCC
Q 015952 143 SSV----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------SDNINMIKLWIMEGVRHG-ELVIRRSDS 203 (397)
Q Consensus 143 G~~----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------~~~~~~~~~~ll~~vgl~-~~~~~~~~l 203 (397)
|.. +.++|+||++.++. .+|+.||+.++... .....+.+.++++.+++. ....++.+|
T Consensus 70 g~~~~~~~~~~~~~~~~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 146 (272)
T PRK13547 70 GEPLAAIDAPRLARLRAVLPQAAQPAF---AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTL 146 (272)
T ss_pred CEEcccCCHHHHHhhcEEecccCCCCC---CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccC
Confidence 962 34899999976443 47999999875321 122345678899999994 346678899
Q ss_pred ChHHHHHHHHHHHHc---------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 204 SSLRNRMRCKAHKIG---------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 204 SGGqkQRvaIArAL~---------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
||||+|||+|||||+ .+|++| +||||| ++||..... ...+.+.++. .+.|+||
T Consensus 147 SgG~~qrv~laral~~~~~~~~~~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tv 208 (272)
T PRK13547 147 SGGELARVQFARVLAQLWPPHDAAQPPRYL--------LLDEPT--AALDLAHQH--RLLDTVRRLA------RDWNLGV 208 (272)
T ss_pred CHHHHHHHHHHHHHhccccccccCCCCCEE--------EEcCcc--ccCCHHHHH--HHHHHHHHHH------HhcCCEE
Confidence 999999999999999 599999 555555 677755443 3344444331 1248999
Q ss_pred EEEech--hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 275 VVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 275 IivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|++||+ ++.++||++ ++|++|++++.|++++++.
T Consensus 209 iiisH~~~~~~~~~d~i-~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 209 LAIVHDPNLAARHADRI-AMLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEEECCHHHHHHhCCEE-EEEECCeEEEecCHHHHcC
Confidence 999995 777899999 5799999999998877753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=319.29 Aligned_cols=215 Identities=18% Similarity=0.262 Sum_probs=168.3
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
..++|+++||+++|+ +..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.
T Consensus 18 ~~~~l~i~nl~~~~~-~~~i-----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 18 AAPAMAAVNLTLGFA-GKTV-----LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cCcEEEEeeEEEEEC-CEEE-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 356899999999996 3334 9999999999999999999999999999999999982111126999999995
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSL 206 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGG 206 (397)
+..++|+||++.+++ .|+++|+.++.. ...+....+.++++.+++.. ....+.+||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP----MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC----ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 246999999988764 699999987532 22334455677889998842 34567889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|+||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++..
T Consensus 168 q~qrl~LAral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~--------~~~~tiiivsH~~~~~~~ 227 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVL--------LLDEPT--SALDPTTTE--KIEEFIRSL--------ADRLTVIIVTHNLAQAAR 227 (276)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHH
Confidence 999999999999999999 555555 777754433 233344332 234899999995 7889
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|||+ ++|++|++++.|++++++..+.+
T Consensus 228 ~~dri-~~l~~G~i~~~g~~~~~~~~~~~ 255 (276)
T PRK14271 228 ISDRA-ALFFDGRLVEEGPTEQLFSSPKH 255 (276)
T ss_pred hCCEE-EEEECCEEEEeCCHHHHHhCcCc
Confidence 99999 57999999999999999876543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=312.11 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=167.1
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
|+++|++++|+. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~-----l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~~~~ 68 (235)
T cd03299 1 LKVENLSKDWKE--FK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITNLPP 68 (235)
T ss_pred CeeEeEEEEeCC--ce-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCcCCh
Confidence 478999999952 24 999999999999999999999999999999999999 99999999996
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
++.++|+||++.++. .+|+.||+.+... ......+.+.++++.+++. ....++.+|||||+||++|||||+
T Consensus 69 ~~~~i~~~~q~~~~~~---~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 69 EKRDISYVPQNYALFP---HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred hHcCEEEEeecCccCC---CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHH
Confidence 247999999988775 5899999987532 1234455678899999994 456778899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|+++ +||||| ++||..... ...+.+.++ ..+.|+|||++||+ ++..+|||+ ++|++|
T Consensus 146 ~~p~ll--------llDEPt--~gLD~~~~~--~l~~~l~~~------~~~~~~tili~tH~~~~~~~~~d~i-~~l~~G 206 (235)
T cd03299 146 VNPKIL--------LLDEPF--SALDVRTKE--KLREELKKI------RKEFGVTVLHVTHDFEEAWALADKV-AIMLNG 206 (235)
T ss_pred cCCCEE--------EECCCc--ccCCHHHHH--HHHHHHHHH------HHhcCCEEEEEecCHHHHHHhCCEE-EEEECC
Confidence 999999 555556 777755443 233333332 11248999999995 778899999 569999
Q ss_pred EEeeeCCcccccCCC
Q 015952 297 ELLGIPPAKQIFDIP 311 (397)
Q Consensus 297 ~iv~~g~~~el~~~~ 311 (397)
++++.|+++++...+
T Consensus 207 ~i~~~~~~~~~~~~~ 221 (235)
T cd03299 207 KLIQVGKPEEVFKKP 221 (235)
T ss_pred EEEEecCHHHHHhCc
Confidence 999999988876654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=317.90 Aligned_cols=209 Identities=12% Similarity=0.151 Sum_probs=166.3
Q ss_pred CCeEEEEeEEEEECC--------CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 69 GSLTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~--------~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
|++|+++||+++|+. +..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~ 70 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTV-----LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVS 70 (268)
T ss_pred CceEEEeceEEEecCCccccccCceee-----EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEE
Confidence 458999999999963 2334 999999999999999999999999999999999999 9999999
Q ss_pred ECcee-------------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-c-ccc
Q 015952 141 YNSSV-------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-E-LVI 198 (397)
Q Consensus 141 i~G~~-------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~-~~~ 198 (397)
++|.. +.++|+||++. ++. ..++.+|+.+... ...+....+.++++.+++. . ...
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 71 WRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP---RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred ECCEeccccChhHHHHHHhcEEEEEcChhhccCC---CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 99972 36999999973 333 4789999865321 2333445788899999994 3 466
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
++.+||||||||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|.|||++|
T Consensus 148 ~~~~LS~Ge~qrl~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~~~~~l~~~~------~~~~~tiiivs 209 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAVEPKLL--------ILDEAV--SNLDLVLQA--GVIRLLKKLQ------QQFGTACLFIT 209 (268)
T ss_pred CCccCChHHHHHHHHHHHHhcCCCEE--------EEeCCC--cccCHHHHH--HHHHHHHHHH------HHcCcEEEEEE
Confidence 78899999999999999999999999 555555 677754433 2334443331 12489999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|+ ++..+||++ ++|++|++++.|++++++.
T Consensus 210 H~~~~i~~~~d~i-~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 210 HDLRLVERFCQRV-MVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred CCHHHHHHhCCEE-EEEECCEEeeeCChhhccC
Confidence 95 777899999 5699999999999988774
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=315.07 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=164.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC----cccEEEECcee-
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p----~~G~I~i~G~~- 145 (397)
+++++|++++| +..+ |+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+.
T Consensus 4 ~l~~~~l~~~~--~~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA--AQPL-----VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe--ccce-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 68999999999 3335 999999999999999999999999999999999999 8 99999999963
Q ss_pred -------CcEEEEecCCC-CCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCcc----cccCCCCCChHHHHHH
Q 015952 146 -------GDGTYFLQEYT-IPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHGE----LVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 -------~~ig~v~Q~~~-l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~~----~~~~~~~lSGGqkQRv 211 (397)
+.++|+||++. .+. +.+|+.+|+.+... ......+.+.++++.+++.. ....+.+||||||||+
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 72 APCALRGRKIATIMQNPRSAFN--PLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cccccccceEEEEecCCccccC--ccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence 46999999975 232 14688888754211 11122356788999999954 3567889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+
T Consensus 150 ~laral~~~p~lL--------lLDEPt--~~LD~~~~~--~l~~~L~~~~------~~~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 150 MIALALLCEAPFI--------IADEPT--TDLDVVAQA--RILDLLESIV------QKRALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred HHHHHHhcCCCEE--------EEeCCC--cccCHHHHH--HHHHHHHHHH------HhcCcEEEEEecCHHHHHHhCCEE
Confidence 9999999999999 555555 677754333 2334443321 1348999999995 777899999
Q ss_pred EEEeeCCEEeeeCCcccccCCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|+++..|++++++..+.
T Consensus 212 -~~l~~G~i~~~~~~~~~~~~~~ 233 (254)
T PRK10418 212 -AVMSHGRIVEQGDVETLFNAPK 233 (254)
T ss_pred -EEEECCEEEEecCHHHHhhCCC
Confidence 5799999999999999877654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=313.61 Aligned_cols=212 Identities=18% Similarity=0.240 Sum_probs=165.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC--CCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE--NDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~--~~~~~p~~G~I~i~G~~- 145 (397)
..|++++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+.+ ++. +++|+|.++|..
T Consensus 3 ~~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~--~~~G~i~~~g~~~ 74 (252)
T PRK14255 3 KKIITSSDVHLFYGK-FEA-----LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV--TITGNVSLRGQNI 74 (252)
T ss_pred cceEEEEeEEEEECC-eeE-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCC--CcccEEEEcCEEc
Confidence 468999999999963 334 999999999999999999999999999999999864 111 259999999962
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCC
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSS 204 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lS 204 (397)
+.++|+||++.+++ .|+.+|+.+... ..+...+.+.+.++.+++. .....+.+||
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 150 (252)
T PRK14255 75 YAPNEDVVQLRKQVGMVFQQPNPFP----FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLS 150 (252)
T ss_pred ccccccHHHhcCeEEEEECCCccCC----CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCC
Confidence 36999999988765 699999986532 1122334566778888762 2356678999
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++
T Consensus 151 ~Gq~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 151 GGQQQRVCIARVLAVKPDVI--------LLDEPT--SALDPISST--QIENMLLEL--------RDQYTIILVTHSMHQA 210 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------HhCCEEEEEECCHHHH
Confidence 99999999999999999999 555556 777755443 233444332 235799999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.++|||| ++|++|++++.|++.+++..+..
T Consensus 211 ~~~~d~i-~~l~~G~i~~~~~~~~~~~~~~~ 240 (252)
T PRK14255 211 SRISDKT-AFFLTGNLIEFADTKQMFLNPKE 240 (252)
T ss_pred HHhCCEE-EEEECCEEEEeCCHHHHhcCCCC
Confidence 8899999 57999999999999999877653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=316.67 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=163.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
.+|+++||+++|+++..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 5 ~~l~~~~l~~~~~~~~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTA-----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQA 74 (272)
T ss_pred ceEEEEeEEEEecCCcEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhHHh
Confidence 369999999999644435 999999999999999999999999999999999999 999999999973
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
..++|+||++.+... ...++.+|+.++.. .....++.+.++++.+++. ....++.+||||||||++|
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 75 LQKNLVAYVPQSEEVDWS-FPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFL 153 (272)
T ss_pred hccceEEEeccccccccC-CCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH
Confidence 359999999765221 13468888765321 1123345677889999994 4566788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+||++ +
T Consensus 154 araL~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~L~~~-------~~~g~tviivsH~~~~~~~~~d~v-~ 213 (272)
T PRK15056 154 ARAIAQQGQVI--------LLDEPF--TGVDVKTEA--RIISLLREL-------RDEGKTMLVSTHNLGSVTEFCDYT-V 213 (272)
T ss_pred HHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-E
Confidence 99999999999 555555 677755443 233444333 1358999999995 788999999 5
Q ss_pred EeeCCEEeeeCCcccccC
Q 015952 292 RTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~ 309 (397)
++ +|+++..|++++++.
T Consensus 214 ~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 214 MV-KGTVLASGPTETTFT 230 (272)
T ss_pred EE-CCEEEeecCHHhccC
Confidence 46 899999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=311.52 Aligned_cols=207 Identities=15% Similarity=0.166 Sum_probs=166.8
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
|+++|++++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 l~~~~l~~~~~~-~~i-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~ 69 (232)
T cd03300 1 IELENVSKFYGG-FVA-----LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITNLPP 69 (232)
T ss_pred CEEEeEEEEeCC-eee-----eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcCCh
Confidence 468999999963 334 999999999999999999999999999999999999 99999999997
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
++.++|++|++.++. .+|+.||+.+... ......+.+..+++.+++. .....+.++||||+||++|||||+
T Consensus 70 ~~~~i~~~~q~~~~~~---~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 70 HKRPVNTVFQNYALFP---HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred hhcceEEEecccccCC---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 257999999988875 5899999976532 2233455678899999994 456778899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|+++++||| | ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++|
T Consensus 147 ~~p~llllDEP--------~--~gLD~~~~~--~l~~~l~~~~------~~~~~tiii~sh~~~~~~~~~d~i-~~l~~G 207 (232)
T cd03300 147 NEPKVLLLDEP--------L--GALDLKLRK--DMQLELKRLQ------KELGITFVFVTHDQEEALTMSDRI-AVMNKG 207 (232)
T ss_pred cCCCEEEEcCC--------c--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHHHHhcCEE-EEEECC
Confidence 99999955555 5 666644433 2333443321 1248999999995 678999999 569999
Q ss_pred EEeeeCCcccccCCC
Q 015952 297 ELLGIPPAKQIFDIP 311 (397)
Q Consensus 297 ~iv~~g~~~el~~~~ 311 (397)
++++.|++++++..+
T Consensus 208 ~~~~~~~~~~~~~~~ 222 (232)
T cd03300 208 KIQQIGTPEEIYEEP 222 (232)
T ss_pred EEEecCCHHHHHhCC
Confidence 999999988877544
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=311.85 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=167.5
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 i~i~~l~~~~~~-~~i-----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~~~~ 69 (237)
T TIGR00968 1 IEIANISKRFGS-FQA-----LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATRVHA 69 (237)
T ss_pred CEEEEEEEEECC-eee-----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcCCh
Confidence 478999999963 335 999999999999999999999999999999999999 999999999972
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.++. .+|+.||+.+... ......+.+.++++.+++. .....+..+|+||+||++|||||+
T Consensus 70 ~~~~i~~~~q~~~~~~---~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 70 RDRKIGFVFQHYALFK---HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred hhcCEEEEecChhhcc---CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 46999999998776 5799999987542 1223345678899999994 456667899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++|||+ ++|++|
T Consensus 147 ~~p~ll--------llDEP~--~~LD~~~~~--~~~~~l~~~~------~~~~~tvli~sH~~~~~~~~~d~i-~~l~~g 207 (237)
T TIGR00968 147 VEPQVL--------LLDEPF--GALDAKVRK--ELRSWLRKLH------DEVHVTTVFVTHDQEEAMEVADRI-VVMSNG 207 (237)
T ss_pred cCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHhhcCEE-EEEECC
Confidence 999999 555555 677755443 2334443321 1238999999994 678999999 569999
Q ss_pred EEeeeCCcccccCCCC
Q 015952 297 ELLGIPPAKQIFDIPE 312 (397)
Q Consensus 297 ~iv~~g~~~el~~~~~ 312 (397)
++++.|++++++..+.
T Consensus 208 ~i~~~~~~~~~~~~~~ 223 (237)
T TIGR00968 208 KIEQIGSPDEVYDHPA 223 (237)
T ss_pred EEEEecCHHHHHcCCC
Confidence 9999999988876543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=355.89 Aligned_cols=240 Identities=15% Similarity=0.211 Sum_probs=185.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~v 106 (397)
......+..++..+.+.+|+.++++.+++.... ....++++||+|+|+++ +++ |+|+||+|++|+.+
T Consensus 412 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i-----l~~i~l~i~~G~~v 486 (694)
T TIGR01846 412 LRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEV-----LSNLNLDIKPGEFI 486 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEECCCCEE
Confidence 344556777788888999999999876553221 12359999999999643 334 99999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
+|+|+||||||||+|+|+|+++ |++|+|.+||. ++.|+||+|++.++. .|++||+.++...
T Consensus 487 aivG~sGsGKSTL~~ll~g~~~-----p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~----~ti~eNi~~~~~~ 557 (694)
T TIGR01846 487 GIVGPSGSGKSTLTKLLQRLYT-----PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS----RSIRDNIALCNPG 557 (694)
T ss_pred EEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh----hhHHHHHhcCCCC
Confidence 9999999999999999999999 99999999997 367999999999986 6999999987531
Q ss_pred hhhHHHHHHHHHHHCCC-----------cc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 177 SDNINMIKLWIMEGVRH-----------GE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl-----------~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
. ..+.+.++++.+++ +. .......||||||||++|||||+++|++| +||||| ++||
T Consensus 558 ~--~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~il--------ilDEpt--s~LD 625 (694)
T TIGR01846 558 A--PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL--------IFDEAT--SALD 625 (694)
T ss_pred C--CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEE--------EEECCC--cCCC
Confidence 1 11222233333333 11 23446678999999999999999999999 556666 7777
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
..++. ...+.+.+. ..++|+|+|||+ ...+.||+| ++|++|++++.|+++++....
T Consensus 626 ~~~~~--~i~~~l~~~--------~~~~t~i~itH~~~~~~~~d~i-i~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 626 YESEA--LIMRNMREI--------CRGRTVIIIAHRLSTVRACDRI-IVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHH--HHHHHHHHH--------hCCCEEEEEeCChHHHHhCCEE-EEEeCCEEEEeCCHHHHHHcC
Confidence 65544 333444332 368999999996 666779999 579999999999999987653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=313.29 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=165.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+..+.-..+++|+|.++|..
T Consensus 4 ~~~i~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE-KHA-----LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC-eee-----eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 458999999999963 334 99999999999999999999999999999999997611000158999999862
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGG 206 (397)
+.++|+||++.+++ .|+.||+.++.. .....+..+.++++.+++. .....+.+||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFP----KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCc----ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHH
Confidence 35899999988775 499999987643 1123345677788888873 235667889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .+++|||++||+ .+.+
T Consensus 154 ~~qrv~laral~~~p~ll--------lLDEP~--~gLD~~~~~--~l~~~l~~~--------~~~~tvii~sh~~~~~~~ 213 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVI--------LMDEPC--SALDPIATA--KIEDLIEDL--------KKEYTVIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------hhCceEEEEEcCHHHHHh
Confidence 999999999999999999 555555 777755443 233444332 235899999995 7778
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+||++ ++|++|+++..|++++++..+.
T Consensus 214 ~~d~v-~~l~~G~i~~~g~~~~~~~~~~ 240 (253)
T PRK14261 214 VSDYT-GFMYLGKLIEFDKTTQIFENPH 240 (253)
T ss_pred hCCEE-EEEECCEEEEcCCHHHHHhCCC
Confidence 99999 5699999999999999876553
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=319.80 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=166.9
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
.+++|+++||+++|+. ..+ |+|+||+|++||+++|+||||||||||+++|+|+.+..-..|++|+|.++|..
T Consensus 36 ~~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE-FEA-----VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4678999999999953 334 99999999999999999999999999999999985300000389999999852
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSG 205 (397)
+.++|+||++.++. .|+.||+.++.. .....++.+.++++.+++. ....++..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFP----KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCc----cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH
Confidence 36999999988775 499999987532 1223345677788888872 23566889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|++| +||||| ++||..... ...+.+.++ ..++|||++||+ ++.
T Consensus 186 Gq~qrv~LAraL~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~L~~~--------~~~~tvIivsH~~~~~~ 245 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEIL--------LLDEPT--SALDPKATA--KIEDLIQEL--------RGSYTIMIVTHNMQQAS 245 (286)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEeCCHHHHH
Confidence 9999999999999999999 555555 777754433 233444332 235899999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
++|||+ ++|++|+++..|++++++..+.+
T Consensus 246 ~~~d~i-~~L~~G~i~~~g~~~~~~~~~~~ 274 (286)
T PRK14275 246 RVSDYT-MFFYEGVLVEHAPTAQLFTNPKD 274 (286)
T ss_pred HhCCEE-EEEECCEEEEeCCHHHHHhCCCc
Confidence 899999 57999999999999998776543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=315.79 Aligned_cols=210 Identities=18% Similarity=0.257 Sum_probs=168.6
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
..++++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 7 ~~~~i~~~~~~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~ 75 (257)
T PRK14246 7 AEDVFNISRLYLYIND-KAI-----LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLY 75 (257)
T ss_pred hhhheeeeeEEEecCC-cee-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEE
Confidence 3578999999999963 334 999999999999999999999999999999999999 99977776662
Q ss_pred -------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCC
Q 015952 145 -------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRS 201 (397)
Q Consensus 145 -------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~ 201 (397)
+..++|+||++.+++ ++|+.+|+.++.. ...+.+..+.++++.+++. .....+.
T Consensus 76 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~---~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (257)
T PRK14246 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFP---HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152 (257)
T ss_pred CCcccccCCHHHHhcceEEEccCCccCC---CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcc
Confidence 246999999988775 5899999987532 1234456678899999984 2356678
Q ss_pred CCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-
Q 015952 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG- 280 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~- 280 (397)
.+|||||||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .++.|||++||+
T Consensus 153 ~LS~G~~qrl~laral~~~P~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiilvsh~~ 212 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVL--------LMDEPT--SMIDIVNSQ--AIEKLITEL--------KNEIAIVIVSHNP 212 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------hcCcEEEEEECCH
Confidence 89999999999999999999999 555556 777755433 233333332 246899999995
Q ss_pred -hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 281 -DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 281 -~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+..+||++ ++|++|+++..|++++++..+.
T Consensus 213 ~~~~~~~d~v-~~l~~g~i~~~g~~~~~~~~~~ 244 (257)
T PRK14246 213 QQVARVADYV-AFLYNGELVEWGSSNEIFTSPK 244 (257)
T ss_pred HHHHHhCCEE-EEEECCEEEEECCHHHHHhCCC
Confidence 777999999 5699999999999999887664
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=315.12 Aligned_cols=202 Identities=19% Similarity=0.249 Sum_probs=163.9
Q ss_pred CCeEEEEeEEEEECCCc---eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee
Q 015952 69 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~---~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~ 145 (397)
+++++++|+++.|..+. ....+.|++||||+|++||+++|||+||||||||-|+|.||++ |++|+|.++|+.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~ 76 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKD 76 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcc
Confidence 46899999999995432 0012455999999999999999999999999999999999999 999999999963
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC--cccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH--GELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
+.. ++ .++..+++.++|+.||+ ....++|+++||||+||++|||||+.+|++
T Consensus 77 -----------i~~----~~-----------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l 130 (268)
T COG4608 77 -----------ITK----LS-----------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL 130 (268)
T ss_pred -----------hhh----cc-----------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE
Confidence 111 12 44566789999999999 356889999999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeee
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~ 301 (397)
+ ++|||+ |+||...+. +.+..+.++ +.+.|.|.++|||| .+..+||||+ +|+.|+|++.
T Consensus 131 i--------V~DEpv--SaLDvSiqa--qIlnLL~dl------q~~~~lt~lFIsHDL~vv~~isdri~-VMy~G~iVE~ 191 (268)
T COG4608 131 I--------VADEPV--SALDVSVQA--QILNLLKDL------QEELGLTYLFISHDLSVVRYISDRIA-VMYLGKIVEI 191 (268)
T ss_pred E--------EecCch--hhcchhHHH--HHHHHHHHH------HHHhCCeEEEEEEEHHhhhhhcccEE-EEecCceeEe
Confidence 9 666666 888855443 334444433 34579999999996 8899999995 6999999999
Q ss_pred CCcccccCCCCCCChhhHHHH
Q 015952 302 PPAKQIFDIPESSDPENELII 322 (397)
Q Consensus 302 g~~~el~~~~~~~~~~~~~~i 322 (397)
|+.+++|.+|.++ .|...+
T Consensus 192 g~~~~~~~~p~Hp--YTk~Ll 210 (268)
T COG4608 192 GPTEEVFSNPLHP--YTKALL 210 (268)
T ss_pred cCHHHHhhCCCCH--HHHHHH
Confidence 9999999998864 455443
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=346.44 Aligned_cols=240 Identities=11% Similarity=0.170 Sum_probs=180.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcccccccc--C------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRT--R------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLL 107 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~va 107 (397)
.....+..++..+.+.+|+.++++.+++... . ....++++||+|+|+++.++ |+|+||+|++|++++
T Consensus 291 ~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~i~~~i~~G~~~~ 365 (585)
T TIGR01192 291 QMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQG-----VFDVSFEAKAGQTVA 365 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceeEEEcCCCEEE
Confidence 3445566667778889999999876543211 0 12359999999999754434 999999999999999
Q ss_pred EECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--
Q 015952 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-- 175 (397)
Q Consensus 108 LvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-- 175 (397)
|+||||||||||+++|+|+++ |++|+|.++|. ++.++|++|++.++. .|++||+.++..
T Consensus 366 ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~----~ti~~Ni~~~~~~~ 436 (585)
T TIGR01192 366 IVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN----RSIRENIRLGREGA 436 (585)
T ss_pred EECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc----ccHHHHHhcCCCCC
Confidence 999999999999999999999 99999999997 357999999999886 699999999754
Q ss_pred ChhhHHHHHH-----HHHHHC--CCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccc
Q 015952 176 ASDNINMIKL-----WIMEGV--RHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (397)
Q Consensus 176 ~~~~~~~~~~-----~ll~~v--gl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~ 247 (397)
..++..+.++ +.+..+ |++ .....+..||||||||++|||||+.+|++| +||||| ++||..+
T Consensus 437 ~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il--------ilDEpt--s~LD~~~ 506 (585)
T TIGR01192 437 TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL--------VLDEAT--SALDVET 506 (585)
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEECCc--cCCCHHH
Confidence 2222222111 112222 232 223456789999999999999999999999 555556 7777554
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
.. ...+.+.+. .+++|||+|||+ +....||+| ++|++|++++.|+++++...
T Consensus 507 ~~--~i~~~l~~~--------~~~~tvI~isH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 507 EA--RVKNAIDAL--------RKNRTTFIIAHRLSTVRNADLV-LFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HH--HHHHHHHHH--------hCCCEEEEEEcChHHHHcCCEE-EEEECCEEEEECCHHHHHHC
Confidence 43 233333322 358999999996 555779999 57999999999999988754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=314.66 Aligned_cols=212 Identities=16% Similarity=0.253 Sum_probs=166.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC--cccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p--~~G~I~i~G~~- 145 (397)
+++++++|++++|++ ..+ |+|+||+|++||+++|+|+||||||||+|+|+|++++.. | ++|+|.++|+.
T Consensus 5 ~~~l~~~~l~~~~~~-~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~--~~~~~G~i~~~g~~i 76 (259)
T PRK14260 5 IPAIKVKDLSFYYNT-SKA-----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEG--PVKVEGVVDFFGQNI 76 (259)
T ss_pred cceEEEEEEEEEECC-eEe-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCccc--CCccceEEEECCEec
Confidence 458999999999963 334 999999999999999999999999999999999998211 1 58999999862
Q ss_pred -----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCC
Q 015952 146 -----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSS 204 (397)
Q Consensus 146 -----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lS 204 (397)
..++|+||++.+++ .|++||+.++.. ......+.+.++++.+++. ....++.+||
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (259)
T PRK14260 77 YDPRININRLRRQIGMVFQRPNPFP----MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS 152 (259)
T ss_pred cccccchHhhhhheEEEecccccCC----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 36999999988764 799999986532 1223345677889988872 2356678899
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++
T Consensus 153 ~G~~qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~tH~~~~i 212 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVL--------LMDEPC--SALDPIATM--KVEELIHSL--------RSELTIAIVTHNMQQA 212 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHH
Confidence 99999999999999999999 555556 777754433 233444332 235899999994 88
Q ss_pred HccccEEEEEee-----CCEEeeeCCcccccCCCCC
Q 015952 283 LSLTDRARIRTY-----LGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 283 ~~~aDrI~v~l~-----~G~iv~~g~~~el~~~~~~ 313 (397)
..+|||++ +|+ +|++++.|++++++..+..
T Consensus 213 ~~~~d~i~-~l~~~~~~~G~i~~~~~~~~~~~~~~~ 247 (259)
T PRK14260 213 TRVSDFTA-FFSTDESRIGQMVEFGVTTQIFSNPLD 247 (259)
T ss_pred HHhcCeEE-EEeccCCCCceEEEeCCHHHHhcCCCC
Confidence 89999995 587 5999999999998876543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=316.10 Aligned_cols=214 Identities=17% Similarity=0.243 Sum_probs=166.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++|+++||+++|+. ..+ |+|+||+|++||+++|+||||||||||+|+|+|++++....|++|+|.++|..
T Consensus 8 ~~~l~i~~v~~~~~~-~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGS-FLA-----VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECC-EEE-----eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 458999999999963 334 99999999999999999999999999999999998611000379999999952
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC---hhhHHHHHHHHHHHCCCc-----ccccCCCCCChHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA---SDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLRN 208 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~---~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGqk 208 (397)
+.++|+||++.+++ .|+.+|+.++... .....+.+.++++.+++. ....++.+||||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 157 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP----KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc----ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence 35999999987765 4999999876431 122334566778888772 23556788999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++..+|
T Consensus 158 qrv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~--------~~~~tvi~vtH~~~~~~~~~ 217 (264)
T PRK14243 158 QRLCIARAIAVQPEVI--------LMDEPC--SALDPISTL--RIEELMHEL--------KEQYTIIIVTHNMQQAARVS 217 (264)
T ss_pred HHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEecCHHHHHHhC
Confidence 9999999999999999 555555 777755443 234444333 235799999995 889999
Q ss_pred cEEEEEee---------CCEEeeeCCcccccCCCCC
Q 015952 287 DRARIRTY---------LGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 287 DrI~v~l~---------~G~iv~~g~~~el~~~~~~ 313 (397)
||+ ++|+ +|++++.|++++++..|.+
T Consensus 218 d~v-~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 252 (264)
T PRK14243 218 DMT-AFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQ 252 (264)
T ss_pred CEE-EEEecccccccccCceEEEeCCHHHHHhCCCc
Confidence 999 4688 8999999999999877653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=341.97 Aligned_cols=248 Identities=13% Similarity=0.066 Sum_probs=185.5
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhcccccc---------------------------
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQSYDQL--------------------------- 64 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--------------------------- 64 (397)
+==|||||++||+.....+++.+.+.... .+.+.++.+..-.+
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGR 240 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCC
Confidence 34589999999999999988888776432 11111111100000
Q ss_pred ---------c-cCCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC
Q 015952 65 ---------R-TRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 134 (397)
Q Consensus 65 ---------~-~~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p 134 (397)
+ ......++++|+++. .+ ++|+||+|++||+++|+||||||||||+|+|+|+++ |
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~-----l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p 305 (501)
T PRK11288 241 EIGDIYGYRPRPLGEVRLRLDGLKGP-----GL-----REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----R 305 (501)
T ss_pred CccccccccccCCCCcEEEEeccccC-----Cc-----ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----C
Confidence 0 001235778888621 24 999999999999999999999999999999999999 9
Q ss_pred cccEEEECcee-----------CcEEEEecCCC---CCCCCCCccHHHHHhcCCC----------ChhhHHHHHHHHHHH
Q 015952 135 ERAQVTYNSSV-----------GDGTYFLQEYT---IPRGSNSFSLYDTRSLSDD----------ASDNINMIKLWIMEG 190 (397)
Q Consensus 135 ~~G~I~i~G~~-----------~~ig~v~Q~~~---l~~~~~~ltv~eni~~~~~----------~~~~~~~~~~~ll~~ 190 (397)
++|+|.++|+. ..++|+||++. ++. .+|+.||+.++.. .....++.+.++++.
T Consensus 306 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 382 (501)
T PRK11288 306 TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP---VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRS 382 (501)
T ss_pred CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC---CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHh
Confidence 99999999862 46899999964 554 6899999877532 111223567889999
Q ss_pred CCC-cc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc
Q 015952 191 VRH-GE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF 268 (397)
Q Consensus 191 vgl-~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~ 268 (397)
+++ .. ...++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .
T Consensus 383 ~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~ 443 (501)
T PRK11288 383 LNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI--------LLDEPT--RGIDVGAKH--EIYNVIYEL-------A 443 (501)
T ss_pred cCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE--------EEcCCC--CCCCHhHHH--HHHHHHHHH-------H
Confidence 999 33 56778999999999999999999999999 555556 777765544 334444443 2
Q ss_pred cCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 269 RDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 269 ~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+.|.|||+|||| ++.++|||+ ++|++|++++.|+++++
T Consensus 444 ~~g~tviivsHd~~~~~~~~d~i-~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 444 AQGVAVLFVSSDLPEVLGVADRI-VVMREGRIAGELAREQA 483 (501)
T ss_pred hCCCEEEEECCCHHHHHhhCCEE-EEEECCEEEEEEccccC
Confidence 458999999995 888999999 56999999999988654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=306.12 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=154.8
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
+++ ||+|+|++ . . + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~~-~l~~~~~~-~-~-----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 2 LCV-DIEKRLPD-F-T-----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSRK 66 (214)
T ss_pred cee-eeeEecCC-e-e-----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecccccc
Confidence 455 99999953 2 3 5 89999999 9999999999999999999999999 999999999852
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIA 214 (397)
+.++|+||++.++. .+|+.+|+.+... .....++++.++++.+++.. ...++.+||||||||++||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFP---HLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCC---CCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHH
Confidence 35999999988876 6899999987543 12234456788999999944 5677899999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|+++ +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+||++ ++
T Consensus 144 ~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tiii~sH~~~~~~~~~d~i-~~ 204 (214)
T cd03297 144 RALAAQPELL--------LLDEPF--SALDRALRL--QLLPELKQIK------KNLNIPVIFVTHDLSEAEYLADRI-VV 204 (214)
T ss_pred HHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHHH------HHcCcEEEEEecCHHHHHHhcCEE-EE
Confidence 9999999999 555556 777754433 2334443321 1248999999995 778899999 57
Q ss_pred eeCCEEeeeC
Q 015952 293 TYLGELLGIP 302 (397)
Q Consensus 293 l~~G~iv~~g 302 (397)
|++|++++.|
T Consensus 205 l~~G~i~~~g 214 (214)
T cd03297 205 MEDGRLQYIG 214 (214)
T ss_pred EECCEEEecC
Confidence 9999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=379.39 Aligned_cols=243 Identities=11% Similarity=0.138 Sum_probs=184.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccc----C--------CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcC
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRT----R--------IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPK 102 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~ 102 (397)
...++..++.++.+.+|+.++++.+++.+. . ...-|+++||+|+|+++ .++ |+|+||+|++
T Consensus 1119 l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v-----L~~lsl~i~~ 1193 (1466)
T PTZ00265 1119 LMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-----YKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc-----ccCeeEEEcC
Confidence 345666777888899999999987543211 0 11359999999999643 234 9999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccCCC-------------------------------------------------CCC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFEND-------------------------------------------------KFA 133 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~-------------------------------------------------~~~ 133 (397)
|+++|||||||||||||+++|.|++++. -..
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999931 000
Q ss_pred CcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--------
Q 015952 134 SERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-------- 195 (397)
Q Consensus 134 p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-------- 195 (397)
|++|+|.+||. ++.||||+|++.||+ .|++||+.++.... ..+.+.++++..++++
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~----gTIreNI~~g~~~a--t~eeI~~A~k~A~l~~fI~~LP~G 1347 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN----MSIYENIKFGKEDA--TREDVKRACKFAAIDEFIESLPNK 1347 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc----ccHHHHHhcCCCCC--CHHHHHHHHHHcCCHHHHHhCccc
Confidence 26999999998 578999999999996 79999999985411 1122344444444311
Q ss_pred ----cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 196 ----LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 196 ----~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
...+...||||||||+||||||+++|+|| +||||| |+||..++. ...+.+.++. ..++
T Consensus 1348 ydT~VGe~G~~LSGGQkQRIaIARALlr~p~IL--------LLDEaT--SaLD~~sE~--~I~~~L~~~~------~~~~ 1409 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKIL--------LLDEAT--SSLDSNSEK--LIEKTIVDIK------DKAD 1409 (1466)
T ss_pred cCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEE--------EEeCcc--cccCHHHHH--HHHHHHHHHh------ccCC
Confidence 12346778999999999999999999999 777777 889877655 2333333320 1258
Q ss_pred ceEEEEech-hHHccccEEEEEeeC----CEEe-eeCCcccccC
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTYL----GELL-GIPPAKQIFD 309 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~~----G~iv-~~g~~~el~~ 309 (397)
+|+|+|||+ ...+.||+| ++|++ |+++ +.|++++++.
T Consensus 1410 ~TvIiIaHRlsti~~aD~I-vvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1410 KTIITIAHRIASIKRSDKI-VVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CEEEEEechHHHHHhCCEE-EEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999997 778889999 57999 9955 8999999985
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=345.30 Aligned_cols=238 Identities=12% Similarity=0.116 Sum_probs=183.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
....+..++..+.+.+|+.++++.+++.... ....++++|++++|+.+ .++ |+|+||+|++|++++|+
T Consensus 273 l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~-----l~~i~~~i~~G~~~~iv 347 (569)
T PRK10789 273 LAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPA-----LENVNFTLKPGQMLGIC 347 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCcc-----ccCeeEEECCCCEEEEE
Confidence 3445667777888899999999875543211 12358999999999643 234 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhh
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN 179 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~ 179 (397)
||||||||||+++|+|+++ |++|+|.++|. ++.++|++|++.+|. -|++||+.++.....
T Consensus 348 G~sGsGKSTLl~ll~g~~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~----~ti~~Ni~~~~~~~~- 417 (569)
T PRK10789 348 GPTGSGKSTLLSLIQRHFD-----VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS----DTVANNIALGRPDAT- 417 (569)
T ss_pred CCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc----ccHHHHHhcCCCCCC-
Confidence 9999999999999999999 99999999997 367999999999986 599999998753211
Q ss_pred HHHHHHHHHHHCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccc
Q 015952 180 INMIKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~ 247 (397)
.+.+.++++.+++. ........||||||||++|||||+++|+++ +||||| ++||...
T Consensus 418 -~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~il--------llDEpt--s~LD~~~ 486 (569)
T PRK10789 418 -QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEIL--------ILDDAL--SAVDGRT 486 (569)
T ss_pred -HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE--------EEECcc--ccCCHHH
Confidence 12233444444442 112345678999999999999999999999 555556 7777554
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
.. ...+.+.+. .+|+|+|+|||+ .....||+| ++|++|++++.|++++++...
T Consensus 487 ~~--~i~~~l~~~--------~~~~tii~itH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 487 EH--QILHNLRQW--------GEGRTVIISAHRLSALTEASEI-LVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HH--HHHHHHHHH--------hCCCEEEEEecchhHHHcCCEE-EEEeCCEEEEecCHHHHHHcC
Confidence 44 233334332 368999999996 666789999 579999999999999987554
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=312.59 Aligned_cols=211 Identities=18% Similarity=0.248 Sum_probs=164.8
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
-+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|+
T Consensus 6 ~~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS-KQI-----LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC-eee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 368999999963 334 9999999999999999999999999999999999751100147999999995
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSLRN 208 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGGqk 208 (397)
++.++|+||++.++. .|+.+|+.++.. .....++.+.++++.+++.. ....+.+||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~----~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFP----KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred chHHHhhhEEEEecCccccc----CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 235999999988775 499999987521 12234456778899999842 3456788999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+|+|||++||+ ++.++|
T Consensus 156 qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiiiisH~~~~~~~~~ 215 (251)
T PRK14244 156 QRLCIARAIAVKPTML--------LMDEPC--SALDPVATN--VIENLIQEL--------KKNFTIIVVTHSMKQAKKVS 215 (251)
T ss_pred HHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEeCCHHHHHhhc
Confidence 9999999999999999 555555 777755443 233444332 247999999995 778899
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
||+ ++|++|++++.|++++++..+.+
T Consensus 216 d~i-~~l~~G~i~~~~~~~~~~~~~~~ 241 (251)
T PRK14244 216 DRV-AFFQSGRIVEYNTTQEIFKNPQS 241 (251)
T ss_pred CEE-EEEECCEEEEeCCHHHHhcCCCC
Confidence 999 57999999999999998876543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=309.02 Aligned_cols=203 Identities=14% Similarity=0.226 Sum_probs=156.5
Q ss_pred EEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (234)
T cd03251 1 VEFKNVTFRYPGDGPPV-----LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVRDYT 70 (234)
T ss_pred CEEEEEEEEeCCCCccc-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhhhCC
Confidence 47899999996431 34 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHH-----HHHHHHHHC--CCc-ccccCCCCCChHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINM-----IKLWIMEGV--RHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~-----~~~~ll~~v--gl~-~~~~~~~~lSGGqkQR 210 (397)
++.++|+||++.++. .|+.||+.++... ...... .+.++++.+ ++. ....++.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 71 LASLRRQIGLVSQDVFLFN----DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HHHHHhhEEEeCCCCeecc----ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 246999999988764 6999999886432 111111 234455555 453 2345678899999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
++|||||+.+|+++ +||||| ++||..... ...+.+.++ .+++|||++||+ ++. .||+
T Consensus 147 v~la~al~~~p~ll--------lLDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~~-~~d~ 205 (234)
T cd03251 147 IAIARALLKDPPIL--------ILDEAT--SALDTESER--LVQAALERL--------MKNRTTFVIAHRLSTIE-NADR 205 (234)
T ss_pred HHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEecCHHHHh-hCCE
Confidence 99999999999999 555555 677754433 233444332 347899999995 554 4999
Q ss_pred EEEEeeCCEEeeeCCcccccCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~ 310 (397)
+ ++|++|+++..|++++++..
T Consensus 206 v-~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 206 I-VVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred E-EEecCCeEeeeCCHHHHHHc
Confidence 9 57999999999988777544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=333.44 Aligned_cols=202 Identities=12% Similarity=0.193 Sum_probs=169.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.-|+++||+++|+++.++ |+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|.+||+
T Consensus 350 ~~I~F~dV~f~y~~k~~i-----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKV-----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIKEV 418 (591)
T ss_pred CcEEEEeeEEEeCCCCce-----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHhhh
Confidence 359999999999876656 999999999999999999999999999999999997 7899999998
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLR 207 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGq 207 (397)
|+-||||||+..||+ -||+.|+.++..+.. .+.+.++.++.++++. ..+...|||||
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFn----dTIl~NI~YGn~sas--~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFN----DTILYNIKYGNPSAS--DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred ChHHhhhheeEeCCcccccc----hhHHHHhhcCCCCcC--HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 578999999999996 699999999976322 1334455566666321 23455679999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
||||+||||++++|+|+ ++|||| |+||..++. ..++.+.+ ...|+|+|+|.|+ .+..-|
T Consensus 493 kQrvslaRa~lKda~Il--------~~DEaT--S~LD~~TE~--~i~~~i~~--------~~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPIL--------LLDEAT--SALDSETER--EILDMIMD--------VMSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred HHHHHHHHHHhcCCCeE--------EecCcc--cccchhhHH--HHHHHHHH--------hcCCCeEEEEEecchhHhcC
Confidence 99999999999999999 777778 889977665 34455433 3579999999997 888999
Q ss_pred cEEEEEeeCCEEeeeCCcccccC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|+| +++++|++.+.|+++|++.
T Consensus 553 DkI-~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 553 DKI-IVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CEE-EEEECCeeEEeccHHHHhh
Confidence 999 5799999999999999987
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=315.52 Aligned_cols=214 Identities=17% Similarity=0.218 Sum_probs=167.0
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 22 ~~~~l~~~nl~~~~~~-~~i-----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGD-KQA-----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECC-eeE-----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 4568999999999963 334 99999999999999999999999999999999998710000389999999862
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSG 205 (397)
+.++|+||++.++. .|+.||+.+... .....++.+.++++.+++. ....++.+|||
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 171 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFP----KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG 171 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCc----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH
Confidence 46899999988775 499999986532 1223345677888988883 23566889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
|||||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .++.|||++||+ ++.
T Consensus 172 Gq~qrv~laral~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~L~~~--------~~~~tiiivtH~~~~~~ 231 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVL--------LLDEPT--SALDPISTL--KIEELITEL--------KSKYTIVIVTHNMQQAA 231 (272)
T ss_pred HHHHHHHHHHHHHCCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------HhCCeEEEEeCCHHHHH
Confidence 9999999999999999999 555555 777754433 233444332 236899999995 778
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|||+ ++|++|+++..|++++++..+.
T Consensus 232 ~~~d~i-~~l~~G~i~~~g~~~~~~~~~~ 259 (272)
T PRK14236 232 RVSDYT-AFMYMGKLVEYGDTDTLFTSPA 259 (272)
T ss_pred hhCCEE-EEEECCEEEecCCHHHHhcCCC
Confidence 899999 5699999999999998876554
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=316.15 Aligned_cols=213 Identities=19% Similarity=0.281 Sum_probs=166.3
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC--CCCCCCcccEEEECcee
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE--NDKFASERAQVTYNSSV 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~--~~~~~p~~G~I~i~G~~ 145 (397)
+.++++++|++++|+. ..+ |+|+||+|++|++++|+|+||||||||+++|+|+++ +.. |++|+|.++|..
T Consensus 21 ~~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~--~~~G~i~~~g~~ 92 (271)
T PRK14238 21 KKVVFDTQNLNLWYGE-DHA-----LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSV--KTTGKILYRDQN 92 (271)
T ss_pred CceEEEEeeeEEEECC-cce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCC--CCceeEEECCEE
Confidence 4568999999999963 334 999999999999999999999999999999999986 222 589999999952
Q ss_pred ------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCC-----cccccCCCCC
Q 015952 146 ------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRH-----GELVIRRSDS 203 (397)
Q Consensus 146 ------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl-----~~~~~~~~~l 203 (397)
+.++|+||++.++. .|+.||+.++.. .....+..+.++++.+++ .....++.+|
T Consensus 93 ~~~~~~~~~~~~~~i~~v~q~~~~~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 93 IFDKSYSVEELRTNVGMVFQKPNPFP----KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred cccccccHHHHhhhEEEEecCCcccc----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 36999999988775 599999986432 112234456677777754 1235668889
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--h
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--D 281 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~ 281 (397)
|||||||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ +
T Consensus 169 SgGe~qrv~laraL~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tiiivsH~~~~ 228 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVI--------LMDEPT--SALDPISTL--KVEELVQEL--------KKDYSIIIVTHNMQQ 228 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEE--------EEeCCC--CcCCHHHHH--HHHHHHHHH--------HcCCEEEEEEcCHHH
Confidence 999999999999999999999 555555 777755443 333444333 236899999995 7
Q ss_pred HHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 282 ~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+.++|||+ ++|++|+++..|++++++..+.+
T Consensus 229 i~~~~d~i-~~l~~G~i~~~g~~~~~~~~~~~ 259 (271)
T PRK14238 229 AARISDKT-AFFLNGYVNEYDDTDKIFSNPSD 259 (271)
T ss_pred HHHhCCEE-EEEECCEEEEeCCHHHHHcCCCC
Confidence 78899999 56999999999999998876643
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=316.14 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=166.0
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 17 ~~~~l~~~nl~~~~~~-~~~-----l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG-FLA-----LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCC-eEE-----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 4569999999999963 334 99999999999999999999999999999999998621000268999999952
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCc-----ccccCCCCCChHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHG-----ELVIRRSDSSSLR 207 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lSGGq 207 (397)
+.++|+||++.++. .|+.+|+.++.. ......+.+.++++.+++. ....++.+|||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 166 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFP----KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166 (274)
T ss_pred cccchhHHHhhcEEEEccCCcccc----ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence 46999999988775 499999987532 1112234456778888762 2345678899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ .+.++
T Consensus 167 ~qrv~LAraL~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~L~~~--------~~~~tiii~sH~~~~~~~~ 226 (274)
T PRK14265 167 QQRLCIARAIAMKPDVL--------LMDEPC--SALDPISTR--QVEELCLEL--------KEQYTIIMVTHNMQQASRV 226 (274)
T ss_pred HHHHHHHHHHhhCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHHh
Confidence 99999999999999999 555555 777754433 233444332 236899999995 78899
Q ss_pred ccEEEEEee---------CCEEeeeCCcccccCCCCC
Q 015952 286 TDRARIRTY---------LGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 286 aDrI~v~l~---------~G~iv~~g~~~el~~~~~~ 313 (397)
|||++ +|+ +|++++.|++++++..+.+
T Consensus 227 ~d~i~-~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~ 262 (274)
T PRK14265 227 ADWTA-FFNTEIDEYGKRRGKLVEFSPTEQMFGSPQT 262 (274)
T ss_pred CCEEE-EEecccccccccCceEEEeCCHHHHHhCCCC
Confidence 99995 687 8999999999999877653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=312.14 Aligned_cols=215 Identities=17% Similarity=0.251 Sum_probs=167.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|+. ..+ |+|+||+|++|++++|+||||||||||+++|+|++++....+.+|+|.++|..
T Consensus 6 ~~l~~~nl~~~~~~-~~i-----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKI-----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC-eeE-----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 57999999999953 334 99999999999999999999999999999999999921111248999999852
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSLR 207 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGGq 207 (397)
+.++|+||++.++. .|+.||+.+... ...+..+.+.++++.+++.. ....+.+|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP----MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred ccchHHhhccEEEEecCCccCc----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 35999999987764 699999986421 12233456778899998732 345678899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
+||++|||||+.+|++| +||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++
T Consensus 156 ~qrv~laral~~~p~vl--------lLDEP~--~~LD~~~~~--~l~~~l~~l~------~~~~~tiiivsH~~~~i~~~ 217 (261)
T PRK14258 156 QQRLCIARALAVKPKVL--------LMDEPC--FGLDPIASM--KVESLIQSLR------LRSELTMVIVSHNLHQVSRL 217 (261)
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEECCHHHHHHh
Confidence 99999999999999999 555555 777754443 2334443321 2358999999995 88899
Q ss_pred ccEEEEEeeC-----CEEeeeCCcccccCCCCC
Q 015952 286 TDRARIRTYL-----GELLGIPPAKQIFDIPES 313 (397)
Q Consensus 286 aDrI~v~l~~-----G~iv~~g~~~el~~~~~~ 313 (397)
|||| ++|++ |+++..|++++++..|..
T Consensus 218 ~d~i-~~l~~~~~~~G~i~~~~~~~~~~~~~~~ 249 (261)
T PRK14258 218 SDFT-AFFKGNENRIGQLVEFGLTKKIFNSPHD 249 (261)
T ss_pred cCEE-EEEccCCCcCceEEEeCCHHHHHhCCCC
Confidence 9999 56999 999999999999877654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=306.18 Aligned_cols=201 Identities=11% Similarity=0.216 Sum_probs=153.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
-++++|++++|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 71 (229)
T cd03254 2 EIEFENVNFSYDEKKPV-----LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIRDIS 71 (229)
T ss_pred eEEEEEEEEecCCCCcc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHHHcC
Confidence 37899999999633334 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCC-----------Cc-ccccCCCCCChHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR-----------HG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vg-----------l~-~~~~~~~~lSGGqk 208 (397)
++.++|+||++.++. .|+.||+.++..... ...+.+.++.++ +. ....++.+||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~----~tv~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 72 RKSLRSMIGVVLQDTFLFS----GTIMENIRLGRPNAT--DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred HHHHhhhEEEecCCchhhh----hHHHHHHhccCCCCC--HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 246999999988775 499999988643211 112222333333 32 22345688999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|+++ +||||| ++||..... ...+.+.++ .+|+|||++||+ ++ ..|
T Consensus 146 ~rv~la~al~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~-~~~ 204 (229)
T cd03254 146 QLLAIARAMLRDPKIL--------ILDEAT--SNIDTETEK--LIQEALEKL--------MKGRTSIIIAHRLSTI-KNA 204 (229)
T ss_pred HHHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEecCHHHH-hhC
Confidence 9999999999999999 555555 777755433 233333322 348999999995 54 569
Q ss_pred cEEEEEeeCCEEeeeCCcccccC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|++ ++|++|+++..|+.+++..
T Consensus 205 d~i-~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 205 DKI-LVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEE-EEEeCCeEEEeCCHHHHHh
Confidence 999 5799999999888776653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=344.10 Aligned_cols=217 Identities=15% Similarity=0.136 Sum_probs=168.5
Q ss_pred CCeEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee
Q 015952 69 GSLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~ 145 (397)
.+|++++|++++|+.+ ..+ |+++||+|++||+++|+||||||||||+|+|+|++++....|++|+|.++|..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~-----l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 77 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV-----VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGES 77 (529)
T ss_pred CceEEEeceEEEecCCCCceee-----eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEe
Confidence 3589999999999632 224 99999999999999999999999999999999999821111279999999962
Q ss_pred --------------CcEEEEecCCC--CCCCCCCccHHHHHhcCC-----CChhhHHHHHHHHHHHCCCcc----cccCC
Q 015952 146 --------------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSD-----DASDNINMIKLWIMEGVRHGE----LVIRR 200 (397)
Q Consensus 146 --------------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~-----~~~~~~~~~~~~ll~~vgl~~----~~~~~ 200 (397)
+.+||+||++. +++ .+++.+|+.+.. ....+..+++.++++.+++.+ ..+++
T Consensus 78 i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNP---LHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred cccCCHHHHHHHhcCceEEEecCchhhcCc---hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 36999999975 333 468999886421 133445677889999999953 36678
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tvi~vtHd 216 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELL--------IADEPT--TALDVSVQA--QILQLLRELQ------QELNMGLLFITHN 216 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEE--------EEcCCC--CccCHHHHH--HHHHHHHHHH------HhcCCeEEEEcCc
Confidence 999999999999999999999999 555555 677754433 3344444331 2248999999995
Q ss_pred --hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 281 --DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 281 --~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+..+|||| ++|++|++++.|++++++..+.
T Consensus 217 ~~~~~~~~dri-~~l~~G~i~~~g~~~~~~~~~~ 249 (529)
T PRK15134 217 LSIVRKLADRV-AVMQNGRCVEQNRAATLFSAPT 249 (529)
T ss_pred HHHHHHhcCEE-EEEECCEEEEeCCHHHHhhCCC
Confidence 778899999 5799999999999988876543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=344.15 Aligned_cols=238 Identities=13% Similarity=0.187 Sum_probs=183.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCc
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTT 104 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge 104 (397)
.....+..++..+.+.+|+.++++.+++.... ....++++||+++|+.+ +.+ |+|+||+|++||
T Consensus 293 ~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i-----L~~inl~i~~Ge 367 (576)
T TIGR02204 293 TLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA-----LDGLNLTVRPGE 367 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc-----ccceeEEecCCC
Confidence 34445677777888899999998765432110 12359999999999642 334 999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
.++|+||||||||||+|+|+|+++ |++|+|.+||. ++.++|+||++.+|. .|++||+.++.
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~----~Ti~~Ni~~~~ 438 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA----ASVMENIRYGR 438 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc----ccHHHHHhcCC
Confidence 999999999999999999999999 99999999996 357999999999986 69999999875
Q ss_pred CChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcc
Q 015952 175 DASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
.... .+.+.++++.+++.+ .......||||||||++||||++++|++| +||||| ++
T Consensus 439 ~~~~--~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~il--------ilDEpt--s~ 506 (576)
T TIGR02204 439 PDAT--DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPIL--------LLDEAT--SA 506 (576)
T ss_pred CCCC--HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeE--------EEeCcc--cc
Confidence 4211 233445555555421 12335568999999999999999999999 556666 77
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
||..+.+ ...+.+.+. .+++|+|+|||+ .....|||| ++|++|++++.|++++++.+
T Consensus 507 lD~~~~~--~i~~~l~~~--------~~~~t~IiitH~~~~~~~~d~v-i~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 507 LDAESEQ--LVQQALETL--------MKGRTTLIIAHRLATVLKADRI-VVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred cCHHHHH--HHHHHHHHH--------hCCCEEEEEecchHHHHhCCEE-EEEECCEEEeeecHHHHHHc
Confidence 7765543 233444332 358999999996 777889999 57999999999999887653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=345.38 Aligned_cols=207 Identities=17% Similarity=0.218 Sum_probs=168.3
Q ss_pred CeEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
++++++|++++|+.+ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i 72 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV-----LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDV 72 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEc
Confidence 489999999999632 224 999999999999999999999999999999999999 999999999972
Q ss_pred -------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHH
Q 015952 146 -------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLR 207 (397)
Q Consensus 146 -------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGq 207 (397)
+.++|+||++.+++ ++|+.||+.+... ...+.++++.++++.+++. .....+.+|||||
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq 149 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLS---HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQ 149 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHH
Confidence 36899999998876 6899999986432 2344556788899999994 4566788999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
+||++|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|+|++||+ +....|
T Consensus 150 ~qrv~LAraL~~~P~lL--------llDEP~--~gLD~~s~~--~l~~ll~~l-------~~~g~tilivsH~~~~~~~~ 210 (648)
T PRK10535 150 QQRVSIARALMNGGQVI--------LADEPT--GALDSHSGE--EVMAILHQL-------RDRGHTVIIVTHDPQVAAQA 210 (648)
T ss_pred HHHHHHHHHHhcCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEECCCHHHHHhC
Confidence 99999999999999999 555555 777755443 233333332 1358999999995 455679
Q ss_pred cEEEEEeeCCEEeeeCCcccccC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~ 309 (397)
||+ ++|++|+++++|++++...
T Consensus 211 d~i-~~l~~G~i~~~g~~~~~~~ 232 (648)
T PRK10535 211 ERV-IEIRDGEIVRNPPAQEKVN 232 (648)
T ss_pred CEE-EEEECCEEEeecCcccccc
Confidence 999 5799999999999988763
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=308.22 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=156.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++|+++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 5 ~~~i~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-AKI-----LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST 73 (225)
T ss_pred CceEEEeccEEeeCC-cee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence 458999999999963 335 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIA 214 (397)
+.++|+||++.+++ .|+.||+.+... ......+.+.++++.+++. . ...++.+|||||+||++||
T Consensus 74 ~~~~~~~~~i~~~~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 74 LKPEIYRQQVSYCAQTPTLFG----DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred CCHHHHHhccEEEeccccccc----ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 46999999988775 599999986432 1112234567899999994 3 4677899999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|+++ +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++ ..|||++ +
T Consensus 150 ral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tvii~sh~~~~~-~~~d~i~-~ 209 (225)
T PRK10247 150 RNLQFMPKVL--------LLDEIT--SALDESNKH--NVNEIIHRYV------REQNIAVLWVTHDKDEI-NHADKVI-T 209 (225)
T ss_pred HHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEECChHHH-HhCCEEE-E
Confidence 9999999999 555555 666644333 2333333321 2348999999995 55 5799995 5
Q ss_pred e-eCCEEeeeCCc
Q 015952 293 T-YLGELLGIPPA 304 (397)
Q Consensus 293 l-~~G~iv~~g~~ 304 (397)
| +++..+++|++
T Consensus 210 l~~~~~~~~~~~~ 222 (225)
T PRK10247 210 LQPHAGEMQEARY 222 (225)
T ss_pred EecccchHhhhhh
Confidence 7 46666777765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=339.66 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=164.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~~~l~~~~l~~~~~~-~~i-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 2 SPYLSFDGIGKTFPG-VKA-----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRF 70 (501)
T ss_pred CceEEEeeeEEEECC-EEE-----EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence 368999999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQ 209 (397)
+.+||+||++.++. .+|+.+|+.++.. ...+.++++.++++.+++. ....++.+|||||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 147 (501)
T PRK11288 71 ASTTAALAAGVAIIYQELHLVP---EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQ 147 (501)
T ss_pred CCHHHHHhCCEEEEEechhccC---CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHH
Confidence 46999999988776 6899999988532 1233456788899999994 446678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||+|||+ ++..+||
T Consensus 148 rv~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 148 MVEIAKALARNARVI--------AFDEPT--SSLSAREIE--QLFRVIREL-------RAEGRVILYVSHRMEEIFALCD 208 (501)
T ss_pred HHHHHHHHHhCCCEE--------EEcCCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999 555556 777754433 233444332 2358999999995 7889999
Q ss_pred EEEEEeeCCEEeeeCCc
Q 015952 288 RARIRTYLGELLGIPPA 304 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~ 304 (397)
|+ ++|++|+++..++.
T Consensus 209 ~i-~~l~~G~i~~~~~~ 224 (501)
T PRK11288 209 AI-TVFKDGRYVATFDD 224 (501)
T ss_pred EE-EEEECCEEEeecCc
Confidence 99 57999999876654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=303.19 Aligned_cols=194 Identities=20% Similarity=0.250 Sum_probs=151.5
Q ss_pred EEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
++++|++++|+.+ ..+ |+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|..
T Consensus 3 l~~~~l~~~~~~~~~~~-----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~ 72 (220)
T cd03245 3 IEFRNVSFSYPNQEIPA-----LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIRQLD 72 (220)
T ss_pred EEEEEEEEEcCCCCccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhHHCC
Confidence 7899999999642 224 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccC-----------CCCCChHHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIR-----------RSDSSSLRN 208 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~-----------~~~lSGGqk 208 (397)
+.++|+||++.++. .|+.||+.+...... ...+.++++.+++.+ .... +.+||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 73 PADLRRNIGYVPQDVTLFY----GTLRDNITLGAPLAD--DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HHHHHhhEEEeCCCCcccc----chHHHHhhcCCCCCC--HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 46999999988765 599999987643211 234556778888743 2332 358999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ...++||
T Consensus 147 qrl~la~al~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sH~~~~~~~~d 206 (220)
T cd03245 147 QAVALARALLNDPPIL--------LLDEPT--SAMDMNSEE--RLKERLRQL--------LGDKTLIIITHRPSLLDLVD 206 (220)
T ss_pred HHHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCCHHHHHhCC
Confidence 9999999999999999 555556 777755443 233444332 224899999995 3457999
Q ss_pred EEEEEeeCCEEeeeC
Q 015952 288 RARIRTYLGELLGIP 302 (397)
Q Consensus 288 rI~v~l~~G~iv~~g 302 (397)
++ ++|++|++++.|
T Consensus 207 ~v-~~l~~g~i~~~~ 220 (220)
T cd03245 207 RI-IVMDSGRIVADG 220 (220)
T ss_pred EE-EEEeCCeEeecC
Confidence 99 579999998653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=304.63 Aligned_cols=198 Identities=15% Similarity=0.200 Sum_probs=157.5
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
.++++|+++.|+.+. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYGA 72 (220)
T ss_pred CEEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHhc
Confidence 378999999996421 0123 999999999999999999999999999999999999 999999999972
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
+.++|+||++.++. .+|+.+|+.++.. ...+....+.++++.+++. .....+.++|||||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~---~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 149 (220)
T TIGR02982 73 SEKELVQLRRNIGYIFQAHNLLG---FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR 149 (220)
T ss_pred CHhHHHHHHhheEEEcCChhhcC---CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 46999999998876 5899999987532 1233456788999999994 4567788999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
++|||||+.+|++|||||| | ++||..... ...+.+.++. .+.++|||++||+ ...++||+|
T Consensus 150 v~laral~~~p~illlDEP--------~--~~LD~~~~~--~l~~~l~~~~------~~~~~tii~~sh~~~~~~~~d~v 211 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEP--------T--AALDSKSGR--DVVELMQKLA------REQGCTILIVTHDNRILDVADRI 211 (220)
T ss_pred HHHHHHHhcCCCEEEEeCC--------C--CcCCHHHHH--HHHHHHHHHH------HHcCCEEEEEeCCHHHHhhCCEE
Confidence 9999999999999955555 5 666654433 3344444331 1258999999995 567899999
Q ss_pred EEEeeCCEE
Q 015952 290 RIRTYLGEL 298 (397)
Q Consensus 290 ~v~l~~G~i 298 (397)
++|++|++
T Consensus 212 -~~l~~g~~ 219 (220)
T TIGR02982 212 -VHMEDGKL 219 (220)
T ss_pred -EEEECCEE
Confidence 56999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=334.05 Aligned_cols=201 Identities=14% Similarity=0.213 Sum_probs=171.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.++++++|++|+|+. +++ |++|||++.+||++||+|+||||||||+|+|+|.++ |++|+|.++|+
T Consensus 6 ~~ll~~~~i~K~Fgg---V~A---L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~ 74 (500)
T COG1129 6 PPLLELRGISKSFGG---VKA---LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAF 74 (500)
T ss_pred cceeeeecceEEcCC---cee---eccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccC
Confidence 568999999999953 234 999999999999999999999999999999999999 99999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRN 208 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqk 208 (397)
...|++|+|+.++.+ ++||.||+.++.. .....++.+.++|+.+++ ........+||.|||
T Consensus 75 ~sp~~A~~~GI~~V~QEl~L~p---~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaqr 151 (500)
T COG1129 75 SSPRDALAAGIATVHQELSLVP---NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQR 151 (500)
T ss_pred CCHHHHHhCCcEEEeechhccC---CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHH
Confidence 357999999999987 7999999998866 235667888999999998 345566788999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~a 286 (397)
|.|+|||||..++++| +||||| ++|+.. +.....+.++++ +++|.+||+||| +++.++|
T Consensus 152 Q~VeIArAl~~~arll--------IlDEPT--aaLt~~--E~~~Lf~~ir~L-------k~~Gv~ii~ISHrl~Ei~~i~ 212 (500)
T COG1129 152 QMVEIARALSFDARVL--------ILDEPT--AALTVK--ETERLFDLIRRL-------KAQGVAIIYISHRLDEVFEIA 212 (500)
T ss_pred HHHHHHHHHhcCCCEE--------EEcCCc--ccCCHH--HHHHHHHHHHHH-------HhCCCEEEEEcCcHHHHHHhc
Confidence 9999999999999999 556666 666632 223455666555 368999999999 6999999
Q ss_pred cEEEEEeeCCEEeeeCC
Q 015952 287 DRARIRTYLGELLGIPP 303 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~ 303 (397)
|||. +|+||+.+...+
T Consensus 213 Drit-VlRDG~~v~~~~ 228 (500)
T COG1129 213 DRIT-VLRDGRVVGTRP 228 (500)
T ss_pred CEEE-EEeCCEEeeecc
Confidence 9995 699999999877
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=310.34 Aligned_cols=205 Identities=16% Similarity=0.171 Sum_probs=161.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
++++++||+++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..++
T Consensus 3 ~~l~~~~l~~~~~~-~~v-----l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~-~~i~ 70 (251)
T PRK09544 3 SLVSLENVSVSFGQ-RRV-----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGK-LRIG 70 (251)
T ss_pred cEEEEeceEEEECC-ceE-----EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCc-cCEE
Confidence 48999999999963 335 999999999999999999999999999999999999 99999999984 5799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
|+||++.++.. ...++.+++.+... ...+.+.++++.+++.+ ...++..||||||||++|||||+.+|++|
T Consensus 71 ~v~q~~~~~~~-l~~~~~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll---- 142 (251)
T PRK09544 71 YVPQKLYLDTT-LPLTVNRFLRLRPG---TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL---- 142 (251)
T ss_pred Eeccccccccc-cChhHHHHHhcccc---ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE----
Confidence 99999876541 12478888765321 11345678899999954 45678899999999999999999999999
Q ss_pred ccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCccc
Q 015952 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQ 306 (397)
Q Consensus 229 P~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~e 306 (397)
+||||| ++||..... ...+.+.++. .+.|+|||++||+ ++.++||++ ++|+ |+++..|++++
T Consensus 143 ----lLDEPt--~~LD~~~~~--~l~~~L~~~~------~~~g~tiiivsH~~~~i~~~~d~i-~~l~-~~i~~~g~~~~ 206 (251)
T PRK09544 143 ----VLDEPT--QGVDVNGQV--ALYDLIDQLR------RELDCAVLMVSHDLHLVMAKTDEV-LCLN-HHICCSGTPEV 206 (251)
T ss_pred ----EEeCCC--cCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHHhCCEE-EEEC-CceEeeCCHHH
Confidence 555555 777755433 2334443321 1238999999995 778999999 4686 47999999988
Q ss_pred ccCC
Q 015952 307 IFDI 310 (397)
Q Consensus 307 l~~~ 310 (397)
++..
T Consensus 207 ~~~~ 210 (251)
T PRK09544 207 VSLH 210 (251)
T ss_pred HhCC
Confidence 7654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=335.01 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCc
Q 015952 42 DSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115 (397)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsG 115 (397)
....+.-.+..|+.++++.+++.... ....++++||+|+|++... ++ |+|+||++++||.+||+|+||||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~-~~---L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQT-KA---LKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCcc-ch---hhccceeecCCCeEEEECCCCCC
Confidence 34445556788999999887765432 1116899999999975441 23 99999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHH
Q 015952 116 KSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL 185 (397)
Q Consensus 116 KSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~ 185 (397)
||||+++|.|.++ |++|+|.++|. +..++++.|.+.+|. -|+++|+.++... ...+.+.
T Consensus 377 KSTllqLl~~~~~-----~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~----~Tlr~NL~lA~~~--AsDEel~ 445 (573)
T COG4987 377 KSTLLQLLAGAWD-----PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS----GTLRDNLRLANPD--ASDEELW 445 (573)
T ss_pred HHHHHHHHHhccC-----CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH----HHHHHHHhhcCCC--CCHHHHH
Confidence 9999999999999 99999999996 347999999999997 5999999997652 2233455
Q ss_pred HHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHH
Q 015952 186 WIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 253 (397)
Q Consensus 186 ~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~ 253 (397)
++++++||++. ......+||||+||++|||+|++|.+++ +||||| .+||+.++. +.
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~--------lLDEPT--egLD~~TE~--~v 513 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW--------LLDEPT--EGLDPITER--QV 513 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE--------EecCCc--ccCChhhHH--HH
Confidence 67888887432 2234567999999999999999999999 777778 788887766 23
Q ss_pred HHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 254 NQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 254 ~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++.+.+ ..+|+|+|+|||+ .-.+.|||| ++|++|+++++|++.+++.+
T Consensus 514 L~ll~~--------~~~~kTll~vTHrL~~le~~drI-ivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 514 LALLFE--------HAEGKTLLMVTHRLRGLERMDRI-IVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHH--------HhcCCeEEEEecccccHhhcCEE-EEEECCeeeecCCHHhhhcc
Confidence 333322 3479999999997 556779999 57999999999999999864
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=304.84 Aligned_cols=202 Identities=11% Similarity=0.172 Sum_probs=152.3
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|+++..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 1 IEFENVTFAYDPGRPV-----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIREVTL 70 (236)
T ss_pred CEEEEEEEEeCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhhhCCH
Confidence 4789999999533334 999999999999999999999999999999999999 999999999962
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHH-----HHHHHHHHC--CCcc-cccCCCCCChHHHHHH
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINM-----IKLWIMEGV--RHGE-LVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~-----~~~~ll~~v--gl~~-~~~~~~~lSGGqkQRv 211 (397)
+.++|+||++.++. .|+.||+.++... ...... .+.+.++.+ +++. ...++.+||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl 146 (236)
T cd03253 71 DSLRRAIGVVPQDTVLFN----DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV 146 (236)
T ss_pred HHHHhhEEEECCCChhhc----chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 45999999988775 6999999886432 111111 112233333 2322 2345678999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++||+||| | ++||..... ...+.+.++ .+ |+|||++||+ .+ ..|||+
T Consensus 147 ~la~aL~~~p~llllDEP--------~--~~LD~~~~~--~l~~~l~~~-------~~-~~tiii~sh~~~~~-~~~d~~ 205 (236)
T cd03253 147 AIARAILKNPPILLLDEA--------T--SALDTHTER--EIQAALRDV-------SK-GRTTIVIAHRLSTI-VNADKI 205 (236)
T ss_pred HHHHHHhcCCCEEEEeCC--------c--ccCCHHHHH--HHHHHHHHh-------cC-CCEEEEEcCCHHHH-HhCCEE
Confidence 999999999999955555 5 666644333 233444332 23 8999999994 55 459999
Q ss_pred EEEeeCCEEeeeCCcccccC
Q 015952 290 RIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|+++..|+++++..
T Consensus 206 -~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 206 -IVLKDGRIVERGTHEELLA 224 (236)
T ss_pred -EEEECCEEEeeCCHHHHhh
Confidence 5799999999988877654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=323.22 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=186.2
Q ss_pred CCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
+++|+++|+++.|.... .+++ +++|||+|++||++||||+||||||-..+.|+||++.+....-+|+|.|+|.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~a---Vk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEA---VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEe---eccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 67899999999995332 2344 9999999999999999999999999999999999997666667899999998
Q ss_pred -----------eCcEEEEecCCCC--CC-CCCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCCc----ccccCCCCCCh
Q 015952 145 -----------VGDGTYFLQEYTI--PR-GSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHG----ELVIRRSDSSS 205 (397)
Q Consensus 145 -----------~~~ig~v~Q~~~l--~~-~~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl~----~~~~~~~~lSG 205 (397)
..+|+++||+|+. .+ ..+.-.+.|.+.+... .....++++.++|+.+|+. .+..+|++|||
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 2589999999864 22 0112234455555444 6677888999999999993 24778999999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||.||.||+++|++| |.|||| .+||...+. +.++.++++ +.+.|+++++|||| .+.
T Consensus 161 GqRQRVMIAMALan~P~lL--------IADEPT--TALDVtvQa--QIL~Ll~~L------q~~~gMa~lfITHDL~iVr 222 (534)
T COG4172 161 GQRQRVMIAMALANEPDLL--------IADEPT--TALDVTVQA--QILDLLKEL------QAELGMAILFITHDLGIVR 222 (534)
T ss_pred chhhHHHHHHHHcCCCCeE--------eecCCc--chhhhhhHH--HHHHHHHHH------HHHhCcEEEEEeccHHHHH
Confidence 9999999999999999999 666667 788865544 556666654 35679999999997 899
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHHHH
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i~ 323 (397)
++||||+ +|.+|++++.|+.+++|..|.++ +|...+.
T Consensus 223 ~~ADrV~-VM~~G~ivE~~~t~~lF~~PqHp--YTr~Ll~ 259 (534)
T COG4172 223 KFADRVY-VMQHGEIVETGTTETLFAAPQHP--YTRKLLA 259 (534)
T ss_pred HhhhhEE-EEeccEEeecCcHHHHhhCCCCh--HHHHHHh
Confidence 9999996 59999999999999999999864 4554443
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=337.18 Aligned_cols=203 Identities=14% Similarity=0.176 Sum_probs=164.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC--cccEEEECcee---
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV--- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p--~~G~I~i~G~~--- 145 (397)
+|+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|+.
T Consensus 1 ~l~i~~l~~~~~~-~~i-----l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGG-VKA-----LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCC-eEe-----ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 4899999999953 334 999999999999999999999999999999999998 7 79999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-c-ccCCCCCChHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-L-VIRRSDSSSLR 207 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~-~~~~~~lSGGq 207 (397)
+.+||+||++.++. .+|+.||+.++.. ..+...+++.++++.+++.. . ..++.+|||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 146 (500)
T TIGR02633 70 SNIRDTERAGIVIIHQELTLVP---ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQ 146 (500)
T ss_pred CCHHHHHhCCEEEEeeccccCC---CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHH
Confidence 46999999988766 6899999987632 11234467788999999954 3 35588999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ ++..+
T Consensus 147 ~qrv~iA~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~~~g~tviiitHd~~~~~~~ 207 (500)
T TIGR02633 147 QQLVEIAKALNKQARLL--------ILDEPS--SSLTEKETE--ILLDIIRDL-------KAHGVACVYISHKLNEVKAV 207 (500)
T ss_pred HHHHHHHHHHhhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCcHHHHHHh
Confidence 99999999999999999 555556 777755443 333444333 2468999999995 78899
Q ss_pred ccEEEEEeeCCEEeeeCCcccc
Q 015952 286 TDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el 307 (397)
|||| ++|++|+++..++++++
T Consensus 208 ~d~i-~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 208 CDTI-CVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCEE-EEEeCCeEeeecCcccC
Confidence 9999 57999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=337.23 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=159.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++|+++ . + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 266 ~~~l~~~~l~~-----~-~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTG-----E-G-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCC-----C-C-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 34788899873 1 3 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCC---CCCCCCCCccHHHHHhcCC----C---ChhhHHHHHHHHHHHCCCc-c-cccCCCCCCh
Q 015952 146 --------GDGTYFLQEY---TIPRGSNSFSLYDTRSLSD----D---ASDNINMIKLWIMEGVRHG-E-LVIRRSDSSS 205 (397)
Q Consensus 146 --------~~ig~v~Q~~---~l~~~~~~ltv~eni~~~~----~---~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSG 205 (397)
..++|+||++ .++. .+|+.+|+.... . .....++.+.++++.+++. . ..+++.+|||
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~l~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 406 (510)
T PRK15439 330 LSTAQRLARGLVYLPEDRQSSGLYL---DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSG 406 (510)
T ss_pred CCHHHHHhCCcEECCCChhhCCccC---CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCc
Confidence 3699999985 3554 579999985321 0 1122345678899999995 3 5667899999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .++|.|||+|||| ++.
T Consensus 407 G~kqrl~la~al~~~p~lL--------lLDEPt--~gLD~~~~~--~l~~~l~~l-------~~~g~tiIivsHd~~~i~ 467 (510)
T PRK15439 407 GNQQKVLIAKCLEASPQLL--------IVDEPT--RGVDVSARN--DIYQLIRSI-------AAQNVAVLFISSDLEEIE 467 (510)
T ss_pred HHHHHHHHHHHHhhCCCEE--------EECCCC--cCcChhHHH--HHHHHHHHH-------HhCCCEEEEECCCHHHHH
Confidence 9999999999999999999 555556 777765544 334444433 1358999999995 888
Q ss_pred ccccEEEEEeeCCEEeeeCCccccc
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
++|||+ ++|++|+++..++++++.
T Consensus 468 ~~~d~i-~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 468 QMADRV-LVMHQGEISGALTGAAIN 491 (510)
T ss_pred HhCCEE-EEEECCEEEEEEccccCC
Confidence 999999 569999999998886553
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=305.61 Aligned_cols=203 Identities=12% Similarity=0.186 Sum_probs=153.8
Q ss_pred EEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 72 TDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++|+++.|++. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~i~~l~~~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI-----LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIRDL 70 (238)
T ss_pred CeEEEEEEecCCCCCccc-----eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehhhc
Confidence 4789999999642 224 999999999999999999999999999999999999 999999999952
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCCCh--hhHHH-----HHHHHHHHC--CCc-ccccCCCCCChHHHH
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS--DNINM-----IKLWIMEGV--RHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~--~~~~~-----~~~~ll~~v--gl~-~~~~~~~~lSGGqkQ 209 (397)
+.++|+||++.++. .|+.||+.++.... ..... .+.++++.+ +++ ....++.+|||||||
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 146 (238)
T cd03249 71 NLRWLRSQIGLVSQEPVLFD----GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ 146 (238)
T ss_pred CHHHHHhhEEEECCchhhhh----hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence 46999999987764 59999998864321 11111 112233333 332 234567889999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||++||+ ++ .+||
T Consensus 147 rv~la~al~~~p~ll--------llDEP~--~gLD~~~~~--~l~~~l~~~--------~~g~~vi~~sh~~~~~-~~~d 205 (238)
T cd03249 147 RIAIARALLRNPKIL--------LLDEAT--SALDAESEK--LVQEALDRA--------MKGRTTIVIAHRLSTI-RNAD 205 (238)
T ss_pred HHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCCHHHH-hhCC
Confidence 999999999999999 555555 777754443 233333322 268999999995 55 4899
Q ss_pred EEEEEeeCCEEeeeCCcccccCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++ ++|++|++++.++.+++...
T Consensus 206 ~v-~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 206 LI-AVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EE-EEEECCEEEEeCCHHHHhhc
Confidence 99 56999999999888776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=306.12 Aligned_cols=188 Identities=19% Similarity=0.209 Sum_probs=152.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----CcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-----GDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-----~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.. ...+|++|++.++. .+|+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~---~~tv~ 72 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITEPGPDRMVVFQNYSLLP---WLTVR 72 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCCChhheEEecCcccCC---CCCHH
Confidence 578999999999999999999999999999999999 999999999973 23589999998876 58999
Q ss_pred HHHhcCCC------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhh
Q 015952 168 DTRSLSDD------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 240 (397)
Q Consensus 168 eni~~~~~------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~ 240 (397)
||+.++.. ...+.++++.++++.+++. ....++.+||||||||++|||||+.+|++| +|||||
T Consensus 73 e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--------lLDEPt-- 142 (230)
T TIGR01184 73 ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVL--------LLDEPF-- 142 (230)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEE--------EEcCCC--
Confidence 99977521 2233455678899999994 456678899999999999999999999999 555556
Q ss_pred ccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 241 KSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 241 s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
++||+.... ...+.+.++. .+.|+|||++||+ ++.++|||+ ++|++|+++..|+..++
T Consensus 143 ~gLD~~~~~--~l~~~l~~~~------~~~~~tii~~sH~~~~~~~~~d~v-~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 143 GALDALTRG--NLQEELMQIW------EEHRVTVLMVTHDVDEALLLSDRV-VMLTNGPAANIGQILEV 202 (230)
T ss_pred cCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhcCEE-EEEeCCcEecccCceec
Confidence 777755443 2334443321 2358999999995 778999999 57999999999987666
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=306.51 Aligned_cols=214 Identities=19% Similarity=0.209 Sum_probs=166.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
|.+++++||++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+....-..|++|+|.++|..
T Consensus 1 ~~~l~~~~v~~~~~~-~~~-----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 1 MYRIEVENLNTYFDD-AHI-----LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred CcEEEEEeEEEEeCC-eEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 357899999999963 334 99999999999999999999999999999999986411000389999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSL 206 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGG 206 (397)
+.++|+||++.++. .|+.||+.++.. ..+..++++.++++.+++.. ....+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~----~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFP----KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc----chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHH
Confidence 35999999998775 499999986532 12334567788899998732 24557889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
||||++|||||+.+|++||+ |||| ++||..... ...+.+.++ .++.|||++||+ ++..
T Consensus 151 q~qrv~laral~~~p~llll--------DEP~--~gLD~~~~~--~l~~~l~~~--------~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILM--------DEPC--SALDPISTT--KIEDLIHKL--------KEDYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEE--------cCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEECCHHHHHh
Confidence 99999999999999999955 5555 677754333 233444332 347899999994 8899
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+||++ ++|++|++++.|++++++..+..
T Consensus 211 ~~~~i-~~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14266 211 VSKYT-SFFLNGEIIESGLTDQIFINPKD 238 (250)
T ss_pred hcCEE-EEEECCeEEEeCCHHHHHhCCCC
Confidence 99999 46999999999999998766554
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=341.19 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=163.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc--CCCCCCCcccEEEEC-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYN------- 142 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~--~~~~~~p~~G~I~i~------- 142 (397)
|+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEV-----LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECC-eEe-----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 579999999953 334 99999999999999999999999999999999996 7 999999986
Q ss_pred ----------------ce--------------------eCcEEEEecC-CCCCCCCCCccHHHHHhcCCC----ChhhHH
Q 015952 143 ----------------SS--------------------VGDGTYFLQE-YTIPRGSNSFSLYDTRSLSDD----ASDNIN 181 (397)
Q Consensus 143 ----------------G~--------------------~~~ig~v~Q~-~~l~~~~~~ltv~eni~~~~~----~~~~~~ 181 (397)
|. ++.+||+||+ +.++. .+|+++|+.++.. ...+.+
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~ 146 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG---DDTVLDNVLEALEEIGYEGKEAV 146 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC---CCCHHHHHHHHHHHcCCCHHHHH
Confidence 20 2358999997 56665 5799999987532 233445
Q ss_pred HHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 182 MIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 182 ~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
+++.++++.+++.+ ..+++.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++
T Consensus 147 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l 214 (520)
T TIGR03269 147 GRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLF--------LADEPT--GTLDPQTAK--LVHNALEEA 214 (520)
T ss_pred HHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEE--------EeeCCc--ccCCHHHHH--HHHHHHHHH
Confidence 67889999999954 46678999999999999999999999999 555555 777755444 334444443
Q ss_pred cCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 261 FNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
. .+.|+|||+|||+ .+..+|||+ ++|++|+++..|++++++.
T Consensus 215 ~------~~~g~tviivtHd~~~~~~~~d~i-~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 215 V------KASGISMVLTSHWPEVIEDLSDKA-IWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred H------HhcCcEEEEEeCCHHHHHHhcCEE-EEEeCCEEeeecCHHHHHH
Confidence 1 2358999999995 778899999 5799999999888876644
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=340.44 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=160.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
.+++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..+|
T Consensus 318 ~~l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~-~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFDN-GPL-----FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSEN-ANIG 385 (530)
T ss_pred ceEEEEeeEEeeCC-cee-----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCc-eEEE
Confidence 48999999999964 335 999999999999999999999999999999999999 99999999984 5799
Q ss_pred EEecCCC--CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc--ccccCCCCCChHHHHHHHHHHHHcCCCCeEe
Q 015952 150 YFLQEYT--IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (397)
Q Consensus 150 ~v~Q~~~--l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iLl 225 (397)
|++|++. ++. .+|+.+|+.+.... ...++.+.++++.+++. ....++.+||||||||++|||||+.+|++|
T Consensus 386 ~~~q~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ll- 460 (530)
T PRK15064 386 YYAQDHAYDFEN---DLTLFDWMSQWRQE-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVL- 460 (530)
T ss_pred EEcccccccCCC---CCcHHHHHHHhccC-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEE-
Confidence 9999974 333 57999998653211 12245677899999993 346778999999999999999999999999
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-eeC
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GIP 302 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g 302 (397)
+||||| ++||..... .+.+++ . +.+.|||+|||+ ++..+|||+ ++|++|+++ ..|
T Consensus 461 -------lLDEPt--~~LD~~~~~------~l~~~l----~--~~~~tvi~vsHd~~~~~~~~d~i-~~l~~g~i~~~~g 518 (530)
T PRK15064 461 -------VMDEPT--NHMDMESIE------SLNMAL----E--KYEGTLIFVSHDREFVSSLATRI-IEITPDGVVDFSG 518 (530)
T ss_pred -------EEcCCC--CCCCHHHHH------HHHHHH----H--HCCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEcCC
Confidence 555556 777755433 333332 1 113599999995 788899999 569999998 778
Q ss_pred CcccccC
Q 015952 303 PAKQIFD 309 (397)
Q Consensus 303 ~~~el~~ 309 (397)
++.++++
T Consensus 519 ~~~~~~~ 525 (530)
T PRK15064 519 TYEEYLR 525 (530)
T ss_pred CHHHHHH
Confidence 8776653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=373.77 Aligned_cols=231 Identities=10% Similarity=0.117 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccc----C-------CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEEC
Q 015952 43 SLVDQRRRDAVFREVLQSYDQLRT----R-------IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
.++....+.+|+.++++.+++.+. . ....|+++||+++|+++. ++ |+|+||+|++||.+||||
T Consensus 1198 ~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~V-----L~~is~~I~~GekVaIVG 1272 (1622)
T PLN03130 1198 LAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPV-----LHGLSFEISPSEKVGIVG 1272 (1622)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCce-----ecceeEEEcCCCEEEEEC
Confidence 345556678999999876654321 0 123699999999996543 35 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
+||||||||+++|.|+++ |++|+|.+||. |++|++|||+|.+|. -|++||+..+... .
T Consensus 1273 rSGSGKSTLl~lL~rl~~-----p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~----GTIreNLd~~~~~---t 1340 (1622)
T PLN03130 1273 RTGAGKSSMLNALFRIVE-----LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS----GTVRFNLDPFNEH---N 1340 (1622)
T ss_pred CCCCCHHHHHHHHhCcCC-----CCCceEEECCEecccCCHHHHHhccEEECCCCcccc----ccHHHHhCcCCCC---C
Confidence 999999999999999999 99999999998 478999999999997 4999999876431 1
Q ss_pred HHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 181 NMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
++.+.++++.+++.+ .......||||||||+||||||+++|+|| +||||| +++|..++
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~IL--------ILDEAT--SaLD~~Te 1410 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKIL--------VLDEAT--AAVDVRTD 1410 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEE--------EEECCC--CCCCHHHH
Confidence 233455566655521 12345678999999999999999999999 667777 88887666
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
. ...+.+.+. .+++|||+|+|+ .....|||| ++|++|+|++.|+|++++..+
T Consensus 1411 ~--~Iq~~I~~~--------~~~~TvI~IAHRL~tI~~~DrI-lVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130 1411 A--LIQKTIREE--------FKSCTMLIIAHRLNTIIDCDRI-LVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred H--HHHHHHHHH--------CCCCEEEEEeCChHHHHhCCEE-EEEECCEEEEeCCHHHHHhCC
Confidence 5 233444333 368999999996 666779999 579999999999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=334.56 Aligned_cols=247 Identities=13% Similarity=0.151 Sum_probs=182.2
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhc------------------------------cc
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQ------------------------------SY 61 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~------------------------------~~ 61 (397)
+==|||||++||+.....+++.+.+.... .+.+.++.+ ..
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 234 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRS 234 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCC
Confidence 33489999999999999998888776432 111111110 00
Q ss_pred c-----c-cccCCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc
Q 015952 62 D-----Q-LRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135 (397)
Q Consensus 62 ~-----~-~~~~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~ 135 (397)
. . ......++|+++|+++.| . .+ |+++||+|++||+++|+||||||||||+++|+|+.+ |+
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~~l~~~~--~-~~-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~ 301 (491)
T PRK10982 235 LTQRFPDKENKPGEVILEVRNLTSLR--Q-PS-----IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KS 301 (491)
T ss_pred cccccccccCCCCCcEEEEeCccccc--C-cc-----cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CC
Confidence 0 0 000123589999999875 2 24 999999999999999999999999999999999999 99
Q ss_pred ccEEEECcee-----------CcEEEEecCCC---CCCCCCCccHHHH-----HhcCCC-----ChhhHHHHHHHHHHHC
Q 015952 136 RAQVTYNSSV-----------GDGTYFLQEYT---IPRGSNSFSLYDT-----RSLSDD-----ASDNINMIKLWIMEGV 191 (397)
Q Consensus 136 ~G~I~i~G~~-----------~~ig~v~Q~~~---l~~~~~~ltv~en-----i~~~~~-----~~~~~~~~~~~ll~~v 191 (397)
+|+|.++|+. +.++|++|++. ++. .+++.+| +.+... .....++.+.++++.+
T Consensus 302 ~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (491)
T PRK10982 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA---YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378 (491)
T ss_pred ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc---CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence 9999999962 23899999853 343 4666655 322111 1233455678899999
Q ss_pred CCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 192 RHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 192 gl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
++. . ...++.+|||||||||+||||++.+|++| +||||| ++||..... ...+.+.++ .+
T Consensus 379 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~il--------lLDEPt--~gLD~~~~~--~~~~~l~~l-------~~ 439 (491)
T PRK10982 379 RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEIL--------MLDEPT--RGIDVGAKF--EIYQLIAEL-------AK 439 (491)
T ss_pred CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEE--------EEcCCC--cccChhHHH--HHHHHHHHH-------HH
Confidence 994 3 47778999999999999999999999999 556666 777766554 334444433 24
Q ss_pred CCceEEEEech--hHHccccEEEEEeeCCEEeeeCCc
Q 015952 270 DDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPA 304 (397)
Q Consensus 270 ~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~ 304 (397)
.|.|||++||| ++..+|||+ ++|++|+++..++.
T Consensus 440 ~~~tvi~vsHd~~~~~~~~d~v-~~l~~g~i~~~~~~ 475 (491)
T PRK10982 440 KDKGIIIISSEMPELLGITDRI-LVMSNGLVAGIVDT 475 (491)
T ss_pred CCCEEEEECCChHHHHhhCCEE-EEEECCEEEEEEcc
Confidence 58999999995 888999999 57999999987665
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=313.14 Aligned_cols=202 Identities=12% Similarity=0.129 Sum_probs=160.0
Q ss_pred eEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
-|+++|++++|..+ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|.
T Consensus 2 ~i~~~nls~~~~~~~~~~-----l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-----~-~G~I~i~g~~i~~~ 70 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAV-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-----T-EGDIQIDGVSWNSV 70 (275)
T ss_pred eEEEEEEEEEeCCCCCcc-----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-----C-CcEEEECCEEhhhC
Confidence 37899999999532 334 999999999999999999999999999999999986 4 799999996
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCC-----------CChHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSD-----------SSSLR 207 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~-----------lSGGq 207 (397)
++.++|+||++.+++ .|+++|+....... .+.+.++++.+|+. .....|.+ |||||
T Consensus 71 ~~~~lr~~i~~v~q~~~lf~----~tv~~nl~~~~~~~---~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~ 143 (275)
T cd03289 71 PLQKWRKAFGVIPQKVFIFS----GTFRKNLDPYGKWS---DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGH 143 (275)
T ss_pred CHHHHhhhEEEECCCcccch----hhHHHHhhhccCCC---HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHH
Confidence 357999999999886 59999996432211 23456778889984 34455655 99999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
|||++|||||+.+|++| +||||| ++||+.... ...+.+.+. ..++|||+|||+ .....|
T Consensus 144 ~qrl~LaRall~~p~il--------llDEpt--s~LD~~~~~--~l~~~l~~~--------~~~~tii~isH~~~~i~~~ 203 (275)
T cd03289 144 KQLMCLARSVLSKAKIL--------LLDEPS--AHLDPITYQ--VIRKTLKQA--------FADCTVILSEHRIEAMLEC 203 (275)
T ss_pred HHHHHHHHHHhcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEECCHHHHHhC
Confidence 99999999999999999 555556 788865544 233333322 358999999995 444569
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
||| ++|++|++++.|++++++..+
T Consensus 204 dri-~vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 204 QRF-LVIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred CEE-EEecCCeEeecCCHHHHhhCc
Confidence 999 569999999999999998753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=337.50 Aligned_cols=200 Identities=15% Similarity=0.181 Sum_probs=163.0
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-------- 145 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-------- 145 (397)
++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 1 ~~nl~~~~~~-~~i-----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 1 MSNISKSFPG-VKA-----LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred CCceEEEeCC-EEe-----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCCCCHHH
Confidence 4789999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
+.++|+||++.++. .+||.||+.++.. ...+..+++.++++.+++. ...+++.+|||||||||+||
T Consensus 70 ~~~~~i~~v~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 70 ALENGISMVHQELNLVL---QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred HHhCCEEEEeccccccc---CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 46999999987765 6899999987532 1223345788899999994 45667889999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++| +||||| ++||..... ...+.+.++ .+.|+|||++||+ ++..+|||+ ++
T Consensus 147 ~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~~~g~tvii~tH~~~~~~~~~d~i-~~ 206 (491)
T PRK10982 147 KAFSYNAKIV--------IMDEPT--SSLTEKEVN--HLFTIIRKL-------KERGCGIVYISHKMEEIFQLCDEI-TI 206 (491)
T ss_pred HHHHhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCHHHHHHhCCEE-EE
Confidence 9999999999 555556 777755433 333444433 2468999999995 788999999 56
Q ss_pred eeCCEEeeeCCcccc
Q 015952 293 TYLGELLGIPPAKQI 307 (397)
Q Consensus 293 l~~G~iv~~g~~~el 307 (397)
|++|+++..|+++++
T Consensus 207 l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 207 LRDGQWIATQPLAGL 221 (491)
T ss_pred EECCEEEeecChhhC
Confidence 999999999988765
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=372.78 Aligned_cols=232 Identities=12% Similarity=0.120 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccc---C--------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEEC
Q 015952 43 SLVDQRRRDAVFREVLQSYDQLRT---R--------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
.++....+.+|+.++++.+++... . ....|+++||+++|+++ .++ |+|+||+|++||.+||||
T Consensus 1195 ~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v-----L~~isl~I~~GekvaIVG 1269 (1495)
T PLN03232 1195 KAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV-----LHGLSFFVSPSEKVGVVG 1269 (1495)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc-----cccceEEEcCCCEEEEEC
Confidence 444556678899999976654321 0 12359999999999644 335 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
+||||||||+++|.|+++ |++|+|.+||. +++|+||||+|.+|+ -|++||+.++... .
T Consensus 1270 ~SGSGKSTL~~lL~rl~~-----p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~----gTIr~NL~~~~~~---s 1337 (1495)
T PLN03232 1270 RTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS----GTVRFNIDPFSEH---N 1337 (1495)
T ss_pred CCCCCHHHHHHHHhCCCc-----CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC----ccHHHHcCCCCCC---C
Confidence 999999999999999999 99999999998 578999999999997 4999999876431 1
Q ss_pred HHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 181 NMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
.+.+.++++.+++.+ .......||||||||+||||||+++|+|| +||||| +++|..++
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~IL--------ILDEAT--SaLD~~Te 1407 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL--------VLDEAT--ASVDVRTD 1407 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEE--------EEECCc--ccCCHHHH
Confidence 233455566665522 12345678999999999999999999999 667777 88887665
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
. ...+.+.+. .+++|||+|||+ .....|||| ++|++|+|++.|+|++++.++.
T Consensus 1408 ~--~Iq~~L~~~--------~~~~TvI~IAHRl~ti~~~DrI-lVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1408 S--LIQRTIREE--------FKSCTMLVIAHRLNTIIDCDKI-LVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred H--HHHHHHHHH--------cCCCEEEEEeCCHHHHHhCCEE-EEEECCEEEEECCHHHHHhCCC
Confidence 4 233334332 368999999996 666779999 5799999999999999987653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=338.12 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=164.0
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
.||+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~~ 70 (490)
T PRK10938 2 SSLQISQGTFRLSD-TKT-----LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRL 70 (490)
T ss_pred ceEEEEeEEEEcCC-eee-----cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccccC
Confidence 47999999999963 334 999999999999999999999999999999999999 999999998851
Q ss_pred ------CcEEEEecCCCCCC-----CCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 146 ------GDGTYFLQEYTIPR-----GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~-----~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
+.+||+||++.+.. ....+++.+++.+. ....+++.++++.+++.+ ...++.+|||||||||+|
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 71 SFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred CHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHH
Confidence 34899999865311 01246888887543 123456788999999944 567789999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+.++||++ +
T Consensus 147 a~al~~~p~ll--------lLDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tvii~tH~~~~~~~~~d~v-~ 206 (490)
T PRK10938 147 CQALMSEPDLL--------ILDEPF--DGLDVASRQ--QLAELLASL-------HQSGITLVLVLNRFDEIPDFVQFA-G 206 (490)
T ss_pred HHHHHcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HhcCCeEEEEeCCHHHHHhhCCEE-E
Confidence 99999999999 555556 777755443 334444433 2358999999995 888999999 5
Q ss_pred EeeCCEEeeeCCcccccCC
Q 015952 292 RTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~ 310 (397)
+|++|+++..|++++++..
T Consensus 207 ~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 207 VLADCTLAETGEREEILQQ 225 (490)
T ss_pred EEECCEEEEeCCHHHHhcc
Confidence 6999999999998876543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=335.90 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=154.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC-cccEEEECce---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p-~~G~I~i~G~--- 144 (397)
.++++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+.+ + ++|+|.++|+
T Consensus 258 ~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~~ 326 (490)
T PRK10938 258 EPRIVLNNGVVSYND-RPI-----LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRRG 326 (490)
T ss_pred CceEEEeceEEEECC-eeE-----EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccCC
Confidence 458999999999963 334 999999999999999999999999999999999876 6 6999999985
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc--cccCCCCCChH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE--LVIRRSDSSSL 206 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGG 206 (397)
++.+||++|++.++.. ...++.+++.++.. .....++.+.++++.+++.. ...++.+||||
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 327 SGETIWDIKKHIGYVSSSLHLDYR-VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWG 405 (490)
T ss_pred CCCCHHHHHhhceEECHHHHhhcc-cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHH
Confidence 2459999998765320 12467766643211 11223456789999999953 46677899999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.+.|||+|||+ ++..
T Consensus 406 q~qrv~la~al~~~p~ll--------lLDEPt--~gLD~~~~~--~l~~~L~~l~------~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 406 QQRLALIVRALVKHPTLL--------ILDEPL--QGLDPLNRQ--LVRRFVDVLI------SEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHHHHHHhcCCCEE--------EEcCcc--ccCCHHHHH--HHHHHHHHHH------hcCCcEEEEEecchhhhhh
Confidence 999999999999999999 555556 777755443 3344444431 1224579999995 6666
Q ss_pred -cccEEEEEeeCCEEeeeCC
Q 015952 285 -LTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 285 -~aDrI~v~l~~G~iv~~g~ 303 (397)
+||++ ++|++|+++...+
T Consensus 468 ~~~d~v-~~l~~G~i~~~~~ 486 (490)
T PRK10938 468 CITHRL-EFVPDGDIYRYVQ 486 (490)
T ss_pred hhheeE-EEecCCceEEeec
Confidence 59999 5699999987654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=299.95 Aligned_cols=184 Identities=20% Similarity=0.228 Sum_probs=147.4
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-------- 145 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-------- 145 (397)
++|+++.|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 i~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 1 LKNISKKFGD-KII-----LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred CcceEEEECC-EEE-----EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccchhh
Confidence 4799999963 334 999999999999999999999999999999999999 999999999963
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
+.++|++|++.++. .+|+.||+.++.. ......+.+.++++.+++. ...+++.++|||||||++||
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~---~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIE---NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred HHHHHHhCeeEEecchhhcc---CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHH
Confidence 36999999988876 6899999987432 2234456778899999994 44667789999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRAR 290 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~ 290 (397)
|||+.+|++| +||||| ++||..... ...+.+.++ .++|.|||++||+ ....+||+++
T Consensus 147 ral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 147 RAILKDPPLI--------LADEPT--GSLDPKNRD--EVLDLLLEL-------NDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred HHHHcCCCEE--------EEeCCc--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHhhcCEEE
Confidence 9999999999 555555 677754433 334444333 1358999999995 4557899994
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=308.16 Aligned_cols=213 Identities=18% Similarity=0.236 Sum_probs=166.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.+.+.+++++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|++++..-.|++|+|.++|..
T Consensus 6 ~~~~~~~~~~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGN-FMA-----VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCC-EEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 457899999999953 334 99999999999999999999999999999999999810000279999999962
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCcc-----cccCCCCCChHHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGE-----LVIRRSDSSSLRN 208 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~~-----~~~~~~~lSGGqk 208 (397)
+.++|+||++.++. +|+.||+.++.. ........+.++++.+++.. ...++..|||||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPFS----MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCcccc----ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 35899999988764 899999987643 12233456788999999832 2345678999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|++| +||||| ++||..... ...+.+.++ .+++|+|++||+ ++.++|
T Consensus 156 qrv~laral~~~p~ll--------llDEPt--sgLD~~~~~--~l~~~l~~~--------~~~~tii~isH~~~~i~~~~ 215 (261)
T PRK14263 156 QRLCIARAIATEPEVL--------LLDEPC--SALDPIATR--RVEELMVEL--------KKDYTIALVTHNMQQAIRVA 215 (261)
T ss_pred HHHHHHHHHHcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------hcCCeEEEEeCCHHHHHHhC
Confidence 9999999999999999 555555 777755443 334444332 346899999995 788999
Q ss_pred cEEEEEee--------CCEEeeeCCcccccCCCC
Q 015952 287 DRARIRTY--------LGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 287 DrI~v~l~--------~G~iv~~g~~~el~~~~~ 312 (397)
||+ ++|+ +|++++.|++++++..+.
T Consensus 216 d~v-~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~ 248 (261)
T PRK14263 216 DTT-AFFSVDISQGTRTGYLVEMGPTAQIFQNPR 248 (261)
T ss_pred CEE-EEEecccccccCCceEEEeCCHHHHHhCCC
Confidence 999 4685 899999999999887654
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=315.71 Aligned_cols=214 Identities=19% Similarity=0.237 Sum_probs=166.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++|+++||+++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|..
T Consensus 43 ~~~l~i~nl~~~~~~-~~i-----L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DHA-----LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeCC-eee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 458999999999964 334 99999999999999999999999999999999998621111589999999852
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC-----------------hhhHHHHHHHHHHHCCCc-----
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-----------------SDNINMIKLWIMEGVRHG----- 194 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-----------------~~~~~~~~~~ll~~vgl~----- 194 (397)
+.++|+||++.+++ .|+.||+.++... ....++.+.++++.+++.
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 192 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP----KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND 192 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc----ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH
Confidence 36999999988775 5999999875320 122345678889999873
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 195 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 195 ~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
....++.+|||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+++||
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lL--------LLDEPt--sgLD~~~~~--~l~~~L~~~--------~~~~ti 252 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVI--------LMDEPA--SALDPIATS--KIEDLIEEL--------AEEYTV 252 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------hcCCEE
Confidence 235668899999999999999999999999 555555 777754433 234444333 234899
Q ss_pred EEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 275 VVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 275 IivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|++||+ .+..+|||++++|++|++++.|++++++..+.
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~~ 292 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPE 292 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhCcc
Confidence 999995 77899999745589999999999988876554
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=299.24 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=150.4
Q ss_pred EEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 72 lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++++|++++|+.+ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 l~~~~l~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 72 (221)
T cd03244 3 IEFKNVSLRYRPNLPPV-----LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKIG 72 (221)
T ss_pred EEEEEEEEecCCCCccc-----ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhHhCC
Confidence 7899999999643 234 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRN 208 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqk 208 (397)
++.++|+||++.++. .|+.||+.+..... .+.+.++++.+++.+. ..++..|||||+
T Consensus 73 ~~~~~~~i~~~~q~~~l~~----~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~ 145 (221)
T cd03244 73 LHDLRSRISIIPQDPVLFS----GTIRSNLDPFGEYS---DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQR 145 (221)
T ss_pred HHHHhhhEEEECCCCcccc----chHHHHhCcCCCCC---HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHH
Confidence 257999999988765 59999997643211 2334455666665221 246788999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||++|||||+.+|+++ +||||| ++||+.... ...+.+.++ .++.|||++||+ ++. .|
T Consensus 146 qr~~laral~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~~-~~ 204 (221)
T cd03244 146 QLLCLARALLRKSKIL--------VLDEAT--ASVDPETDA--LIQKTIREA--------FKDCTVLTIAHRLDTII-DS 204 (221)
T ss_pred HHHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCCHHHHh-hC
Confidence 9999999999999999 555555 677754433 233333332 346899999995 554 59
Q ss_pred cEEEEEeeCCEEeeeCC
Q 015952 287 DRARIRTYLGELLGIPP 303 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~ 303 (397)
|++ ++|++|++++.|+
T Consensus 205 d~i-~~l~~g~~~~~~~ 220 (221)
T cd03244 205 DRI-LVLDKGRVVEFDS 220 (221)
T ss_pred CEE-EEEECCeEEecCC
Confidence 999 5699999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=306.04 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=145.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---------CcEEEEe-cCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---------GDGTYFL-QEYTIPRGSN 162 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---------~~ig~v~-Q~~~l~~~~~ 162 (397)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.. +.++|++ |++.++.
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--- 108 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW--- 108 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccccchhhcccEEEEcCCccccCC---
Confidence 999999999999999999999999999999999999 999999999962 4689998 4555654
Q ss_pred CccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchh
Q 015952 163 SFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 237 (397)
Q Consensus 163 ~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEp 237 (397)
.+|+.||+.+... ...+..+.+.++++.+++.+ ...++.+||||||||++|||||+.+|++| +||||
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--------llDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL--------FLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--------EEcCC
Confidence 5899999876432 23344556778999999943 56678899999999999999999999999 55555
Q ss_pred hhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeC
Q 015952 238 AVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 238 T~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g 302 (397)
| ++||+.... ...+.+.++ ..+.++|||++||+ ++..+||++ ++|++|++++.|
T Consensus 181 t--~~LD~~~~~--~l~~~l~~~------~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g 236 (236)
T cd03267 181 T--IGLDVVAQE--NIRNFLKEY------NRERGTTVLLTSHYMKDIEALARRV-LVIDKGRLLYDG 236 (236)
T ss_pred C--CCCCHHHHH--HHHHHHHHH------HhcCCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEecC
Confidence 5 677754443 233444332 12348899999995 678999999 569999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=304.89 Aligned_cols=203 Identities=15% Similarity=0.073 Sum_probs=158.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~- 145 (397)
.++++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|..
T Consensus 5 ~~~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNE-NEI-----LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCC-EEe-----eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 458999999999963 334 9999999999999999999999999999999998 57 999999999962
Q ss_pred --------C--cEEEEecCCCCCCCCCCccHHHHHhcCCCC-----------hhhHHHHHHHHHHHCCCc-c-cccCCC-
Q 015952 146 --------G--DGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-----------SDNINMIKLWIMEGVRHG-E-LVIRRS- 201 (397)
Q Consensus 146 --------~--~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-----------~~~~~~~~~~ll~~vgl~-~-~~~~~~- 201 (397)
. .++|+||++.+++ .+++.+|+.+.... ..+....+.++++.+++. . ..+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 150 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIP---GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE 150 (252)
T ss_pred ccCChhhhheeeEEEEeccccccc---cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccccc
Confidence 1 3789999988776 57899998754210 112235667889999995 3 355565
Q ss_pred CCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-
Q 015952 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG- 280 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~- 280 (397)
+|||||+|||+|||||+.+|++||+ |||| ++||..... ...+.+.++ .++|+|||++||+
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llll--------DEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tii~~tH~~ 211 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAIL--------DETD--SGLDIDALK--IIAEGINKL-------MTSENSIILITHYQ 211 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEE--------cCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCH
Confidence 4999999999999999999999955 5555 666654433 233444333 1358999999995
Q ss_pred -hHHcc-ccEEEEEeeCCEEeeeCCcc
Q 015952 281 -DLLSL-TDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 281 -~~~~~-aDrI~v~l~~G~iv~~g~~~ 305 (397)
.+..+ ||++ ++|++|++++.|+++
T Consensus 212 ~~~~~~~~d~i-~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 212 RLLDYIKPDYV-HVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHhhhCCEE-EEEeCCEEEEecChh
Confidence 55555 8999 569999999999886
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=301.82 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=157.7
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.++++||+++|++.+ ...+ |+|+||+|++||+++|+||||||||||+|+|+|+++... |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECChH
Confidence 578999999996431 0123 999999999999999999999999999999999986222 58999999996
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHH-HHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLW-IMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~-ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
++.++|+||++.++. .+|+.||+.++.. ........+.+ +++.+++.. ....+.+|||||+||++|
T Consensus 78 ~~~~~i~~~~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 78 QFQKCVAYVRQDDILLP---GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred HhcccEEEeCCCCccCc---CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 357999999988876 6899999987532 11112233444 888888854 456678999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRAR 290 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~ 290 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|.|+|++||+ ++..+||++
T Consensus 155 aral~~~p~il--------llDEP~--~gLD~~~~~--~~~~~l~~~-------~~~~~tiii~sh~~~~~~~~~~d~i- 214 (226)
T cd03234 155 AVQLLWDPKVL--------ILDEPT--SGLDSFTAL--NLVSTLSQL-------ARRNRIVILTIHQPRSDLFRLFDRI- 214 (226)
T ss_pred HHHHHhCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCCCHHHHHhCCEE-
Confidence 99999999999 555555 677754433 334444433 1358899999994 689999999
Q ss_pred EEeeCCEEeeeC
Q 015952 291 IRTYLGELLGIP 302 (397)
Q Consensus 291 v~l~~G~iv~~g 302 (397)
++|++|++++.|
T Consensus 215 ~~l~~G~i~~~g 226 (226)
T cd03234 215 LLLSSGEIVYSG 226 (226)
T ss_pred EEEeCCEEEecC
Confidence 569999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=325.77 Aligned_cols=241 Identities=14% Similarity=0.197 Sum_probs=192.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLL 107 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~va 107 (397)
-+.+...++|..-...+++.++++.+++..+- ...-++++||+|.|.+++++ |+||||++.+|+++|
T Consensus 494 ~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v-----l~disF~v~pGktvA 568 (790)
T KOG0056|consen 494 FFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV-----LSDISFTVQPGKTVA 568 (790)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce-----eecceEEecCCcEEE
Confidence 34556677888888899999999988875431 34469999999999888867 999999999999999
Q ss_pred EECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--
Q 015952 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-- 175 (397)
Q Consensus 108 LvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-- 175 (397)
||||||+||||+||++.+++. .++|.|.+||+ |..||+|||+..+|+ -|+..|+.++..
T Consensus 569 lVG~SGaGKSTimRlLfRffd-----v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN----dTI~yNIryak~~A 639 (790)
T KOG0056|consen 569 LVGPSGAGKSTIMRLLFRFFD-----VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN----DTILYNIRYAKPSA 639 (790)
T ss_pred EECCCCCchhHHHHHHHHHhh-----ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec----ceeeeheeecCCCC
Confidence 999999999999999999999 99999999998 578999999999997 699999999866
Q ss_pred ChhhHHHH---------HHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 176 ASDNINMI---------KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 176 ~~~~~~~~---------~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
..++..+. +....+++.. .-..+...||||+||||||||+++++|.|+ +|||+| |+||..
T Consensus 640 sneevyaAAkAA~IHdrIl~fPegY~t-~VGERGLkLSGGEKQRVAiARtiLK~P~iI--------lLDEAT--SALDT~ 708 (790)
T KOG0056|consen 640 SNEEVYAAAKAAQIHDRILQFPEGYNT-RVGERGLKLSGGEKQRVAIARTILKAPSII--------LLDEAT--SALDTN 708 (790)
T ss_pred ChHHHHHHHHHhhHHHHHhcCchhhhh-hhhhcccccCCcchhhHHHHHHHhcCCcEE--------EEcchh--hhcCCc
Confidence 22332222 2222222222 113457788999999999999999999999 777777 888866
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++. .|...+ .+...++|-|+|.|+ ...-.||.| +++++|+|++.|+++|+..+..
T Consensus 709 tER------~IQaaL----~rlca~RTtIVvAHRLSTivnAD~I-Lvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 709 TER------AIQAAL----ARLCANRTTIVVAHRLSTIVNADLI-LVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred cHH------HHHHHH----HHHhcCCceEEEeeeehheecccEE-EEEeCCeEeecCcHHHHHhccC
Confidence 654 222221 122578999999997 888899999 5799999999999999987643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=336.99 Aligned_cols=208 Identities=15% Similarity=0.179 Sum_probs=160.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccc-----C-----CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRT-----R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~v 106 (397)
....+..++..+.+.+|+.++++.+++... . ....++++||+|+|++++++ |+|+||+|++|+.+
T Consensus 290 l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~v-----L~~isl~i~~G~~v 364 (529)
T TIGR02868 290 LPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPV-----LDGVSLDLPPGERV 364 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCce-----eecceEEEcCCCEE
Confidence 344566777888889999999976654211 0 11259999999999754445 99999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 177 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~ 177 (397)
+|+||||||||||+|+|+|+++ |++|+|.+||. ++.|+||+|++.+|+ -|++||+.++....
T Consensus 365 aIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~----~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 365 AILGPSGSGKSTLLMLLTGLLD-----PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD----TTVRDNLRLGRPDA 435 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhHHHHHHhheEEEccCccccc----ccHHHHHhccCCCC
Confidence 9999999999999999999999 99999999996 358999999999997 59999999975411
Q ss_pred hhHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 178 DNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 178 ~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
.++.+.++++.+++++. ..+...||||||||++|||||+++|++| +||||| ++||.
T Consensus 436 --~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il--------iLDE~T--SaLD~ 503 (529)
T TIGR02868 436 --TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL--------LLDEPT--EHLDA 503 (529)
T ss_pred --CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCH
Confidence 12334556666665321 2235668999999999999999999999 666667 88886
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.++. ...+.+.+ ..+++|+|+|||+
T Consensus 504 ~te~--~I~~~l~~--------~~~~~TvIiItHr 528 (529)
T TIGR02868 504 GTES--ELLEDLLA--------ALSGKTVVVITHH 528 (529)
T ss_pred HHHH--HHHHHHHH--------hcCCCEEEEEecC
Confidence 6554 23333322 2468999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=337.01 Aligned_cols=229 Identities=11% Similarity=0.137 Sum_probs=175.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhccccccc--cC----CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEE
Q 015952 34 DEGSRDSWDSLVDQRRRDAVFREVLQSYDQLR--TR----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLL 107 (397)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~va 107 (397)
.......+..++..+.+.+|+.++++.+.+.. .. ....++++||+|+|+++.++ |+|+||+|++|+.++
T Consensus 279 l~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~-----l~~i~~~i~~G~~~a 353 (547)
T PRK10522 279 LLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFS-----VGPINLTIKRGELLF 353 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCCeE-----EecceEEEcCCCEEE
Confidence 34455566677778888999999875433211 11 11369999999999744445 999999999999999
Q ss_pred EECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh
Q 015952 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 177 (397)
Q Consensus 108 LvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~ 177 (397)
|+||||||||||+++|+|+++ |++|+|.++|. ++.++|++|++.+|+ .|+.+| +.
T Consensus 354 ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~----~ti~~n---~~--- 418 (547)
T PRK10522 354 LIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD----QLLGPE---GK--- 418 (547)
T ss_pred EECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHH----Hhhccc---cC---
Confidence 999999999999999999999 99999999998 367999999999886 578777 11
Q ss_pred hhHHHHHHHHHHHCCCccccc------CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhh
Q 015952 178 DNINMIKLWIMEGVRHGELVI------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (397)
Q Consensus 178 ~~~~~~~~~ll~~vgl~~~~~------~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~ 251 (397)
....+.+.++++.++++.... ....||||||||++|||||+++|++| +||||| ++||+.+..
T Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il--------ilDE~t--s~LD~~~~~-- 486 (547)
T PRK10522 419 PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDIL--------LLDEWA--ADQDPHFRR-- 486 (547)
T ss_pred chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEECCC--CCCCHHHHH--
Confidence 122345667888888843211 14578999999999999999999999 666666 788865543
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeee
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~ 301 (397)
...+.+.+.. ...++|+|+|||+ ...+.||+| ++|++|++++.
T Consensus 487 ~i~~~l~~~~------~~~~~tvi~itH~~~~~~~~d~i-~~l~~G~i~e~ 530 (547)
T PRK10522 487 EFYQVLLPLL------QEMGKTIFAISHDDHYFIHADRL-LEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHH------HhCCCEEEEEEechHHHHhCCEE-EEEECCEEEEe
Confidence 2333333221 1258999999996 778899999 57999999976
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=298.89 Aligned_cols=193 Identities=14% Similarity=0.124 Sum_probs=154.3
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..++++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 8 ~~~~l~~~~l~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~ 76 (214)
T PRK13543 8 APPLLAAHALAFSRNE-EPV-----FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT 76 (214)
T ss_pred CcceEEEeeEEEecCC-cee-----eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence 4568999999999964 335 999999999999999999999999999999999999 999999999963
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|++|++.++. .+|+.||+.+... ......+.+.++++.+++. ....++.+||||||||++||||++
T Consensus 77 ~~~~~~~i~~~~q~~~~~~---~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 77 RGDRSRFMAYLGHLPGLKA---DLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred chhhhhceEEeecCccccc---CCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 35999999987765 5799999876432 1122345667889999994 456778899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
.+|+++ +||||| ++||..... ...+.+.+. .++|.|||++||+ ++.++|||+ +++.
T Consensus 154 ~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~~~~~i-~~l~ 211 (214)
T PRK13543 154 SPAPLW--------LLDEPY--ANLDLEGIT--LVNRMISAH-------LRGGGAALVTTHGAYAAPPVRTRM-LTLE 211 (214)
T ss_pred cCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecChhhhhhhcceE-EEEe
Confidence 999999 555556 777755433 233333332 2468899999995 889999999 4465
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=306.99 Aligned_cols=214 Identities=14% Similarity=0.190 Sum_probs=165.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
..+|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|.
T Consensus 14 ~~~l~~~~l~~~~~~-~~v-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQA-----LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC-eee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 467999999999963 334 9999999999999999999999999999999999982100017999999874
Q ss_pred ----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCc-----ccccCCCCCC
Q 015952 145 ----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHG-----ELVIRRSDSS 204 (397)
Q Consensus 145 ----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~-----~~~~~~~~lS 204 (397)
++.++|+||++.++. .|+.||+.++.. .....++.+.++++.+++. .....+.+||
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~----~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFP----KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLS 163 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCc----chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCC
Confidence 235899999988775 499999987532 1122345677788888762 2345678899
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
|||+||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .++.|||+|||+ ++
T Consensus 164 ~G~~qrv~laral~~~p~ll--------llDEPt--~gLD~~~~~--~l~~~l~~l--------~~~~tiiivth~~~~~ 223 (265)
T PRK14252 164 GGQQQRLCIARALATDPEIL--------LFDEPT--SALDPIATA--SIEELISDL--------KNKVTILIVTHNMQQA 223 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------HhCCEEEEEecCHHHH
Confidence 99999999999999999999 555555 777754433 233444332 236899999995 77
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.++|||+ ++|++|++++.|++++++..+..
T Consensus 224 ~~~~d~i-~~l~~G~i~~~g~~~~~~~~~~~ 253 (265)
T PRK14252 224 ARVSDYT-AYMYMGELIEFGATDTIFIKPKN 253 (265)
T ss_pred HHhCCEE-EEEECCEEEEeCCHHHHHhCCCC
Confidence 8899999 56999999999999998866543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=297.26 Aligned_cols=189 Identities=13% Similarity=0.139 Sum_probs=150.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|+. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~-~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~~~ 69 (204)
T PRK13538 1 MLEARNLACERDE-RIL-----FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRRQR 69 (204)
T ss_pred CeEEEEEEEEECC-EEE-----EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccch
Confidence 5899999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCCC-hhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-SDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.++|++|++.+++ .+|+.||+.+.... .....+.+.++++.+++. ....++.+||||||||++|||||+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 70 DEYHQDLLYLGHQPGIKT---ELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred HHhhhheEEeCCccccCc---CCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 46999999987765 68999999876431 113345678899999994 4566788999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
+|+++ +||||| ++||..... ...+.+.+. .++|.|||++||+ ++....+|+ +++
T Consensus 147 ~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sh~~~~i~~~~~~~-~~~ 202 (204)
T PRK13538 147 RAPLW--------ILDEPF--TAIDKQGVA--RLEALLAQH-------AEQGGMVILTTHQDLPVASDKVRK-LRL 202 (204)
T ss_pred CCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecChhhhccCCceE-Eec
Confidence 99999 555555 777755443 233444332 1358899999995 666777788 444
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=300.44 Aligned_cols=195 Identities=17% Similarity=0.243 Sum_probs=152.2
Q ss_pred CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-
Q 015952 68 IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~- 144 (397)
..++++++|++++|++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~ 77 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLV-----LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKP 77 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCcc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCc
Confidence 46789999999999642 224 999999999999999999999999999999999999 99999999996
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHH-----HHHHHHHHHC--CCc-ccccCCCCCCh
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNIN-----MIKLWIMEGV--RHG-ELVIRRSDSSS 205 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~-----~~~~~ll~~v--gl~-~~~~~~~~lSG 205 (397)
++.++|+||++.++. .|+.||+.++... ..... ..+.++++.+ |+. ....++.+|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~----~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 153 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA----RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSG 153 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh----hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 246999999987764 5999999876431 11111 1245677888 674 34667889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+++|+|++||+ ++
T Consensus 154 G~~qrv~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~- 212 (226)
T cd03248 154 GQKQRVAIARALIRNPQVL--------ILDEAT--SALDAESEQ--QVQQALYDW--------PERRTVLVIAHRLSTV- 212 (226)
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------cCCCEEEEEECCHHHH-
Confidence 9999999999999999999 555555 777755433 233444332 235899999995 55
Q ss_pred ccccEEEEEeeCCEE
Q 015952 284 SLTDRARIRTYLGEL 298 (397)
Q Consensus 284 ~~aDrI~v~l~~G~i 298 (397)
..||+| ++|++|++
T Consensus 213 ~~~d~i-~~l~~g~i 226 (226)
T cd03248 213 ERADQI-LVLDGGRI 226 (226)
T ss_pred HhCCEE-EEecCCcC
Confidence 469999 56999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=292.77 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=148.8
Q ss_pred CeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
..++++|++++|+.. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~-----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 74 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPV-----LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDIST 74 (207)
T ss_pred CeEEEEEEEEEeCCCCccc-----ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhHH
Confidence 468999999999642 234 999999999999999999999999999999999999 99999999996
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
++.++|+||++.++. .|+.+|+.+..... .+.+.++++ ...++..|||||+||++|||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~----~tv~~~l~~~~~~~---~~~~~~~l~------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 75 IPLEDLRSSLTIIPQDPTLFS----GTIRSNLDPFDEYS---DEEIYGALR------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred CCHHHHHhhEEEEecCCcccC----ccHHHHhcccCCCC---HHHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 257999999997765 59999997643211 122333333 24568899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|+++ +||||| ++||+.... ...+.+.+. .+|+|+|++||+ .+. .||++ ++|++|
T Consensus 142 ~~p~ll--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tiii~th~~~~~~-~~d~v-~~l~~g 199 (207)
T cd03369 142 KRPRVL--------VLDEAT--ASIDYATDA--LIQKTIREE--------FTNSTILTIAHRLRTII-DYDKI-LVMDAG 199 (207)
T ss_pred hCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCCHHHHh-hCCEE-EEEECC
Confidence 999999 555555 777754433 233333332 348999999995 554 49999 569999
Q ss_pred EEeeeCCc
Q 015952 297 ELLGIPPA 304 (397)
Q Consensus 297 ~iv~~g~~ 304 (397)
+++..|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99987764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=304.91 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=158.2
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-------
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------- 145 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------- 145 (397)
+++||++. . + |+|+||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|+.
T Consensus 2 ~~~~l~~~----~-~-----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~~~~~~ 65 (248)
T PRK03695 2 QLNDVAVS----T-R-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLEAWSAA 65 (248)
T ss_pred cccccchh----c-e-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecCcCCHH
Confidence 57788874 1 3 999999999999999999999999999999999986 6 8999999972
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.++|+||++.++. .+|+.+|+.++.. ......+.+.++++.+++.. ....+.+||||||||++|||||+
T Consensus 66 ~~~~~i~~v~q~~~~~~---~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 66 ELARHRAYLSQQQTPPF---AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred HHhhheEEecccCccCC---CccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 35899999986654 5899999988632 22334567788999999943 46678899999999999999999
Q ss_pred C-------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 219 C-------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 219 ~-------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
. +|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ ++.++||++
T Consensus 143 ~~~~~~~p~p~ll--------llDEPt--~~LD~~~~~--~l~~~L~~~-------~~~~~tvi~~sH~~~~~~~~~d~i 203 (248)
T PRK03695 143 QVWPDINPAGQLL--------LLDEPM--NSLDVAQQA--ALDRLLSEL-------CQQGIAVVMSSHDLNHTLRHADRV 203 (248)
T ss_pred ccccccCCCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCHHHHHHhCCEE
Confidence 7 67999 555555 777755433 233344332 1358999999995 688999999
Q ss_pred EEEeeCCEEeeeCCcccccC
Q 015952 290 RIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|++++.|++++++.
T Consensus 204 -~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 204 -WLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred -EEEECCEEEEECCHHHHhC
Confidence 5799999999999887753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=303.59 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=179.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++++++|+|+|++.. + ++|+||++++|++.+++|||||||||++|+|.|++. |++|+|.++|.
T Consensus 2 ~L~ie~vtK~Fg~k~-a-----v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~~~~ 70 (300)
T COG4152 2 ALEIEGVTKSFGDKK-A-----VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLSQEI 70 (300)
T ss_pred ceEEecchhccCcee-e-----ecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchhhhh
Confidence 689999999996432 4 999999999999999999999999999999999999 99999999997
Q ss_pred eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcC
Q 015952 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 145 ~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.+|||+|.+..|++ .+||.|.+.|... +..+.+..+..+|+++++ +...++..+||.|++|++.+..|+++
T Consensus 71 ~~rIGyLPEERGLy~---k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 71 KNRIGYLPEERGLYP---KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred hhhcccChhhhccCc---cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 468999999999988 7999999988654 677888899999999999 66777888999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEeeCCE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLGE 297 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~~G~ 297 (397)
+|++++|||| ||+||+.+.+ ...+.+.++ ++.|.|||++|| +.+.++||++ +.|++|+
T Consensus 148 ePeLlILDEP----------FSGLDPVN~e--lLk~~I~~l-------k~~GatIifSsH~Me~vEeLCD~l-lmL~kG~ 207 (300)
T COG4152 148 EPELLILDEP----------FSGLDPVNVE--LLKDAIFEL-------KEEGATIIFSSHRMEHVEELCDRL-LMLKKGQ 207 (300)
T ss_pred CCCEEEecCC----------ccCCChhhHH--HHHHHHHHH-------HhcCCEEEEecchHHHHHHHhhhh-heecCCc
Confidence 9999966666 4888876655 233444443 368999999999 5999999999 5699999
Q ss_pred EeeeCCcccccCC
Q 015952 298 LLGIPPAKQIFDI 310 (397)
Q Consensus 298 iv~~g~~~el~~~ 310 (397)
.|-+|+.+++...
T Consensus 208 ~V~~G~v~~ir~~ 220 (300)
T COG4152 208 TVLYGTVEDIRRS 220 (300)
T ss_pred eEEeccHHHHHHh
Confidence 9999999887653
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=298.38 Aligned_cols=188 Identities=13% Similarity=0.134 Sum_probs=148.5
Q ss_pred eEEEEeEEEEECC----C--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEEC--
Q 015952 71 LTDAKNKILSYTP----G--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-- 142 (397)
Q Consensus 71 ~lel~nvs~~Y~~----~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~-- 142 (397)
|++++|++++|+. + ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~ 70 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV-----LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHE 70 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE-----EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecC
Confidence 5899999999952 1 224 999999999999999999999999999999999999 999999997
Q ss_pred ce----------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-c-ccCC
Q 015952 143 SS----------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-L-VIRR 200 (397)
Q Consensus 143 G~----------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~-~~~~ 200 (397)
|. ++.+||+||++.+++ .+|+.||+.+... ......+.+.++++.+++.. . ..++
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (224)
T TIGR02324 71 GAWVDLAQASPREVLEVRRKTIGYVSQFLRVIP---RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPP 147 (224)
T ss_pred CCccchhhcCHHHHHHHHhcceEEEecccccCC---CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCc
Confidence 41 136999999988776 6899999876422 22334567788999999953 3 5578
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+||||||||++|||||+.+|+++ +||||| ++||..... ...+.+.++ .++|+|||++||+
T Consensus 148 ~~LS~G~~qrl~laral~~~p~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tii~vsH~ 208 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIADYPIL--------LLDEPT--ASLDAANRQ--VVVELIAEA-------KARGAALIGIFHD 208 (224)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCC
Confidence 899999999999999999999999 555555 677754443 233444332 2358999999995
Q ss_pred --hHHccccEEE
Q 015952 281 --DLLSLTDRAR 290 (397)
Q Consensus 281 --~~~~~aDrI~ 290 (397)
.+..+|||++
T Consensus 209 ~~~~~~~~d~i~ 220 (224)
T TIGR02324 209 EEVRELVADRVM 220 (224)
T ss_pred HHHHHHhcceeE
Confidence 5678999993
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=331.96 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=167.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
....+..++..+.+.+|+.++++.+++.... ....++++||+|+|+++. ++ |+|+||+|++|+.++|+
T Consensus 280 l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i-----l~~i~l~i~~G~~~~iv 354 (529)
T TIGR02857 280 LGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAPA-----LRPVSFTVPPGERVALV 354 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCccc-----ccceeEEECCCCEEEEE
Confidence 3445667777888899999999754322111 113699999999996543 35 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhh
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN 179 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~ 179 (397)
||||||||||+|+|+|+++ |++|+|.++|. ++.+|||+|++.+|+ .|++||+.++....
T Consensus 355 G~sGsGKSTL~~ll~g~~~-----~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~----~ti~~Ni~~~~~~~-- 423 (529)
T TIGR02857 355 GPSGAGKSTLLNLLLGFVD-----PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA----GTIAENIRLARPDA-- 423 (529)
T ss_pred CCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC----cCHHHHHhccCCCC--
Confidence 9999999999999999999 99999999998 357999999999986 69999999875421
Q ss_pred HHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccc
Q 015952 180 INMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~ 247 (397)
.++.+.++++.+++.+ .......||||||||++|||||+++|+++ +||||| ++||+.+
T Consensus 424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~il--------ilDE~t--s~lD~~~ 493 (529)
T TIGR02857 424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLL--------LLDEPT--AHLDAET 493 (529)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEE--------EEeCcc--cccCHHH
Confidence 1233445555555521 12345678999999999999999999999 666666 7888665
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEE
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRAR 290 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~ 290 (397)
.. ...+.+.+. .+++|+|+|||+ ...+.||+|+
T Consensus 494 ~~--~i~~~l~~~--------~~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 494 EA--LVTEALRAL--------AQGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred HH--HHHHHHHHh--------cCCCEEEEEecCHHHHHhCCEEE
Confidence 54 233344332 368999999996 6678899994
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=300.93 Aligned_cols=192 Identities=16% Similarity=0.127 Sum_probs=153.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC----cccEEEECcee--------CcEEEEecCCC--CC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSV--------GDGTYFLQEYT--IP 158 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p----~~G~I~i~G~~--------~~ig~v~Q~~~--l~ 158 (397)
|+|+||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|+. +.++|++|++. ++
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEechhhhhhhheeEEEecCchhhcC
Confidence 789999999999999999999999999999999999 8 89999999962 47999999984 33
Q ss_pred CCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc---c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeecccc
Q 015952 159 RGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG---E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (397)
Q Consensus 159 ~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~---~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~ 230 (397)
. .+|+.+|+.+... .....++++.++++.+++. . ....+..|||||||||+|||||+.+|++|
T Consensus 77 ~---~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl------ 147 (230)
T TIGR02770 77 P---LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL------ 147 (230)
T ss_pred c---ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE------
Confidence 3 4799998765321 1233456688899999995 2 35667889999999999999999999999
Q ss_pred ccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 231 ~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
+||||| ++||..... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++|+++..|++++++
T Consensus 148 --lLDEPt--~~LD~~~~~--~l~~~l~~~~------~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 148 --IADEPT--TDLDVVNQA--RVLKLLRELR------QLFGTGILLITHDLGVVARIADEV-AVMDDGRIVERGTVKEIF 214 (230)
T ss_pred --EEcCCc--cccCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCHHHHH
Confidence 555555 777754433 2334443331 1248899999995 778899999 569999999999999887
Q ss_pred CCC
Q 015952 309 DIP 311 (397)
Q Consensus 309 ~~~ 311 (397)
..+
T Consensus 215 ~~~ 217 (230)
T TIGR02770 215 YNP 217 (230)
T ss_pred hCc
Confidence 654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=293.88 Aligned_cols=206 Identities=15% Similarity=0.182 Sum_probs=170.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+.+|++++.. ++.+ |+++||++++||+++|+||||||||||||.|+|-+. |++|++.++|.
T Consensus 1 mi~a~nls~~~~-Gr~l-----l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~~~ 69 (259)
T COG4559 1 MIRAENLSYSLA-GRRL-----LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNSWP 69 (259)
T ss_pred CeeeeeeEEEee-ccee-----ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhhCC
Confidence 689999999986 4435 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC----hh--hHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA----SD--NINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~----~~--~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaI 213 (397)
.+.-++++|+..+-+ .|||+|.+.++..+ .+ +..+.+.++|..+++..+ .+....|||||||||.+
T Consensus 70 ~~~lA~~raVlpQ~s~laF---pFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql 146 (259)
T COG4559 70 PEELARHRAVLPQNSSLAF---PFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL 146 (259)
T ss_pred HHHHHHHhhhcccCccccc---ceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH
Confidence 256799999987743 59999999998762 22 445568889999999444 55577889999999999
Q ss_pred HHHHcCC------CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcc
Q 015952 214 AHKIGCE------PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSL 285 (397)
Q Consensus 214 ArAL~~~------P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~ 285 (397)
||.|+.- +++| +||||| ++||..-+. ..++..+++ ..+|..|+.|-|| .++.|
T Consensus 147 ARvLaQl~~~v~~~r~L--------~LDEPt--saLDi~HQ~--~tl~laR~l-------a~~g~~V~~VLHDLNLAA~Y 207 (259)
T COG4559 147 ARVLAQLWPPVPSGRWL--------FLDEPT--SALDIAHQH--HTLRLARQL-------AREGGAVLAVLHDLNLAAQY 207 (259)
T ss_pred HHHHHHccCCCCCCceE--------EecCCc--cccchHHHH--HHHHHHHHH-------HhcCCcEEEEEccchHHHHh
Confidence 9999863 4588 677777 899965444 344555444 2467899999996 99999
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
|||| ++|++|+++..|+|++++..
T Consensus 208 aDri-vll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 208 ADRI-VLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred hhee-eeeeCCeEeecCCHHHhcCH
Confidence 9999 67999999999999998754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=365.21 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=183.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccccc---cC--------CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcE
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYDQLR---TR--------IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~ 105 (397)
...+..++....+.+|+.++++.+++.+ .. ....|+++||+++|+++. ++ |+|+||+|++||.
T Consensus 1240 ~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~v-----L~~is~~I~~Gek 1314 (1522)
T TIGR00957 1240 VRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV-----LRHINVTIHGGEK 1314 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCccc-----ccceeEEEcCCCE
Confidence 3445566667778999999997665432 10 123599999999996542 34 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHh-cCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRS-LSD 174 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~-~~~ 174 (397)
+||||+||||||||+++|.|+++ |++|+|.+||. |++|++|||+|.+|. -|+++|+. ++.
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~-----~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~----gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINE-----SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS----GSLRMNLDPFSQ 1385 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCcc-----CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccC----ccHHHHcCcccC
Confidence 99999999999999999999999 99999999998 578999999999997 49999997 332
Q ss_pred CChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcc
Q 015952 175 DASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
... +.+.++++.+++.+ .......||||||||+||||||+++|+|| +||||| ++
T Consensus 1386 ~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL--------iLDEaT--Sa 1451 (1522)
T TIGR00957 1386 YSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL--------VLDEAT--AA 1451 (1522)
T ss_pred CCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE--------EEECCc--cc
Confidence 122 23445556555421 12345678999999999999999999999 667777 88
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+|..++. ...+.+++. .+++|||+|||+ .....|||| ++|++|+|++.|+|++++.+
T Consensus 1452 lD~~Te~--~Iq~~l~~~--------~~~~TvI~IAHRl~ti~~~DrI-lVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1452 VDLETDN--LIQSTIRTQ--------FEDCTVLTIAHRLNTIMDYTRV-IVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CCHHHHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHhCCEE-EEEECCEEEEECCHHHHHhC
Confidence 8876654 233344332 368999999997 777789999 57999999999999999865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=293.44 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=149.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
|+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~i~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (201)
T cd03231 1 LEADELTCERDG-RAL-----FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDFQRD 69 (201)
T ss_pred CEEEEEEEEeCC-cee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccccH
Confidence 578999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P 221 (397)
+.++|++|++.++. .+|+.||+.+..... ..+++.++++.+++. ....++.+||||||||++|||||+.+|
T Consensus 70 ~~~~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 70 SIARGLLYLGHAPGIKT---TLSVLENLRFWHADH--SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred HhhhheEEeccccccCC---CcCHHHHHHhhcccc--cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999987765 689999998764321 345678899999994 346678889999999999999999999
Q ss_pred CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 222 ~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
+++ +||||| ++||..... ...+.+.+. .++|.|+|++||+ ....+|+++ +++
T Consensus 145 ~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tiii~sH~~~~~~~~~~~~-~~~ 198 (201)
T cd03231 145 PLW--------ILDEPT--TALDKAGVA--RFAEAMAGH-------CARGGMVVLTTHQDLGLSEAGARE-LDL 198 (201)
T ss_pred CEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCchhhhhcccee-Eec
Confidence 999 555556 777754433 233334332 2358899999994 788899999 434
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=300.15 Aligned_cols=201 Identities=15% Similarity=0.074 Sum_probs=151.9
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee---
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~--- 145 (397)
|++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+ ++ |++|+|.++|..
T Consensus 1 ~i~~~nl~~~~~~-~~~-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVED-KAI-----LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCC-eee-----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 5899999999963 334 9999999999999999999999999999999999 47 999999999961
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCC-------C----ChhhHHHHHHHHHHHCCC-ccc-ccCCC-CC
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD-------D----ASDNINMIKLWIMEGVRH-GEL-VIRRS-DS 203 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~-------~----~~~~~~~~~~~ll~~vgl-~~~-~~~~~-~l 203 (397)
..++|++|++.++. .++..++..+.. . .......++.++++.+++ ... ...+. +|
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 146 (248)
T PRK09580 70 LSPEDRAGEGIFMAFQYPVEIP---GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF 146 (248)
T ss_pred CCHHHHhhcceEEEecCchhcc---chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCC
Confidence 35999999987665 345544433211 0 111234567788999998 333 33343 79
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--h
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--D 281 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~ 281 (397)
||||||||+|||||+.+|++| +||||| ++||..... ...+.+.++ .+.|+|||++||+ .
T Consensus 147 S~G~~qrv~laral~~~p~il--------lLDEPt--~~LD~~~~~--~l~~~l~~l-------~~~~~tiii~sH~~~~ 207 (248)
T PRK09580 147 SGGEKKRNDILQMAVLEPELC--------ILDESD--SGLDIDALK--IVADGVNSL-------RDGKRSFIIVTHYQRI 207 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHH
Confidence 999999999999999999999 555555 777754433 233333332 2358899999995 5
Q ss_pred HHcc-ccEEEEEeeCCEEeeeCCcc
Q 015952 282 LLSL-TDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 282 ~~~~-aDrI~v~l~~G~iv~~g~~~ 305 (397)
+..+ ||++ ++|++|+++..|+++
T Consensus 208 ~~~~~~d~i-~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 208 LDYIKPDYV-HVLYQGRIVKSGDFT 231 (248)
T ss_pred HHhhhCCEE-EEEECCeEEEeCCHH
Confidence 5565 8999 569999999988775
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=323.24 Aligned_cols=247 Identities=13% Similarity=0.173 Sum_probs=194.8
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHhccccccccC-----CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcE
Q 015952 31 SGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~ 105 (397)
-.|.+++...|..+..+|.++.|+++.+...+..... ....+.++++++.=++.+ ... |+++||++.+||.
T Consensus 289 LaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~-~pi---l~~isF~l~~G~~ 364 (580)
T COG4618 289 LAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQK-KPI---LKGISFALQAGEA 364 (580)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCC-Ccc---eecceeEecCCce
Confidence 3578899999999999999999999999988765442 345799999987543332 122 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCC-
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSD- 174 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~- 174 (397)
++||||||||||||.|+|.|..+ |++|.|++||. .+.|||+||+-.||+ =||.|||.=..
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~----GTIaeNIaRf~~ 435 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD----GTIAENIARFGE 435 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchhhhcCCHHHhccccCcCcccceecC----CcHHHHHHhccc
Confidence 99999999999999999999999 99999999997 378999999999997 39999997544
Q ss_pred C-ChhhHH-----HHHHHHHHHCCCcc---cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 175 D-ASDNIN-----MIKLWIMEGVRHGE---LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 175 ~-~~~~~~-----~~~~~ll~~vgl~~---~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
. ..+..- ..+.++.-++-.++ .-.....||||||||+++||||..+|.++ +||||. ++||.
T Consensus 436 ~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv--------VLDEPN--sNLD~ 505 (580)
T COG4618 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV--------VLDEPN--SNLDS 505 (580)
T ss_pred cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE--------EecCCC--CCcch
Confidence 2 111111 12334444443322 23346778999999999999999999999 667777 88885
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
..+. ...+.+... +++|.|+|+|||+ .+...+|+| ++|++|++...|+.+|++.+
T Consensus 506 ~GE~--AL~~Ai~~~-------k~rG~~vvviaHRPs~L~~~Dki-lvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEA--ALAAAILAA-------KARGGTVVVIAHRPSALASVDKI-LVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHH--HHHHHHHHH-------HHcCCEEEEEecCHHHHhhccee-eeecCChHHhcCCHHHHHHH
Confidence 5443 334444433 3589999999997 999999999 56999999999999988754
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=321.30 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=169.0
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
++.+++++++|.|+ + +.+ +++|||+|++||+.||+|+||||||||+++|.|+++ |++|+|.++|+
T Consensus 2 ~~~l~~~~itK~f~-~--~~A---nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~ 70 (501)
T COG3845 2 EPALEMRGITKRFP-G--VVA---NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRI 70 (501)
T ss_pred CceEEEeccEEEcC-C--EEe---cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEecc
Confidence 35799999999996 3 345 999999999999999999999999999999999999 99999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNR 209 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQ 209 (397)
+..||+|+|++.|++ .+||.||+.++.. .....++++.++.+++|+. +...+..+||=||||
T Consensus 71 ~sP~dA~~~GIGMVhQHF~Lv~---~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQ 147 (501)
T COG3845 71 KSPRDAIRLGIGMVHQHFMLVP---TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQ 147 (501)
T ss_pred CCHHHHHHcCCcEEeecccccc---ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhH
Confidence 367999999999988 7999999999875 3456778899999999994 557788999999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aD 287 (397)
||.|-+||+++|++||| |||| +.|-+. +..+..+.+.++ ++.|+|||+||| +++.++||
T Consensus 148 RVEIlKaLyr~a~iLIL--------DEPT--aVLTP~--E~~~lf~~l~~l-------~~~G~tIi~ITHKL~Ev~~iaD 208 (501)
T COG3845 148 RVEILKALYRGARLLIL--------DEPT--AVLTPQ--EADELFEILRRL-------AAEGKTIIFITHKLKEVMAIAD 208 (501)
T ss_pred HHHHHHHHhcCCCEEEE--------cCCc--ccCCHH--HHHHHHHHHHHH-------HHCCCEEEEEeccHHHHHHhhC
Confidence 99999999999999955 5555 444421 112344444443 368999999999 69999999
Q ss_pred EEEEEeeCCEEeeeCC
Q 015952 288 RARIRTYLGELLGIPP 303 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~ 303 (397)
|+. +|..|+++..-+
T Consensus 209 rvT-VLR~Gkvvgt~~ 223 (501)
T COG3845 209 RVT-VLRRGKVVGTVD 223 (501)
T ss_pred eeE-EEeCCeEEeeec
Confidence 996 599999887655
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=302.10 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=155.7
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
+..++++|++++|+.. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~i-----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~ 86 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPV-----LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDIS 86 (257)
T ss_pred CceEEEEEEEEEeCCCCCcc-----eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhh
Confidence 5679999999999642 234 999999999999999999999999999999999999 99999999996
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC-hhhHHH-----HHHHHHHHC--CCc-ccccCCCCCChHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-SDNINM-----IKLWIMEGV--RHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-~~~~~~-----~~~~ll~~v--gl~-~~~~~~~~lSGGqk 208 (397)
++.++|++|++.++. .|+.+|+...... ...... .+.++++.+ +++ .....+..|||||+
T Consensus 87 ~~~~~~~~~~i~~v~q~~~l~~----~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 87 KLPLHTLRSRLSIILQDPILFS----GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred hCCHHHHhhhEEEECCCCcccc----cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 246999999998775 5999998654221 111111 122334444 342 22345678999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
||++|||||+.+|++| +||||| ++||+.... ...+.+.++ .++.|||++||+ .....||
T Consensus 163 qrl~laral~~~p~ll--------llDEPt--~gLD~~~~~--~l~~~l~~~--------~~~~tiii~sh~~~~~~~~d 222 (257)
T cd03288 163 QLFCLARAFVRKSSIL--------IMDEAT--ASIDMATEN--ILQKVVMTA--------FADRTVVTIAHRVSTILDAD 222 (257)
T ss_pred HHHHHHHHHhcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHHh--------cCCCEEEEEecChHHHHhCC
Confidence 9999999999999999 555556 777755433 233333322 347999999995 3334599
Q ss_pred EEEEEeeCCEEeeeCCcccccCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~ 310 (397)
|+ ++|++|++++.|+++++...
T Consensus 223 ri-~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 223 LV-LVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred EE-EEEECCEEEEeCCHHHHHhc
Confidence 99 57999999999998887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=364.25 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=166.2
Q ss_pred eEEEEeEEEEECCCce-EeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 71 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~-v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
.|+++||+++|+++.+ + |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~v-----L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLV-----LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIGAY 1377 (1560)
T ss_pred eEEEEEEEEEeCCCCCce-----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccC
Confidence 5999999999975532 5 999999999999999999999999999999999999 99999999998
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLR 207 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGq 207 (397)
++.||||||++.+|. -|+++|+...... ..+.+.++++.+++.+. ......|||||
T Consensus 1378 ~l~~LR~~I~iVpQdp~LF~----gTIreNIdp~~~~---sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQ 1450 (1560)
T PTZ00243 1378 GLRELRRQFSMIPQDPVLFD----GTVRQNVDPFLEA---SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQ 1450 (1560)
T ss_pred CHHHHHhcceEECCCCcccc----ccHHHHhCcccCC---CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHH
Confidence 478999999999997 4999999764321 12445667777776321 22346789999
Q ss_pred HHHHHHHHHHcCC-CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcc
Q 015952 208 NRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~-P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~ 285 (397)
|||+||||||+++ |+|| +||||| +++|..++. ...+.+.+. .+++|||+|||+ .....
T Consensus 1451 rQrLaLARALL~~~~~IL--------lLDEAT--SaLD~~te~--~Iq~~L~~~--------~~~~TvI~IAHRl~ti~~ 1510 (1560)
T PTZ00243 1451 RQLMCMARALLKKGSGFI--------LMDEAT--ANIDPALDR--QIQATVMSA--------FSAYTVITIAHRLHTVAQ 1510 (1560)
T ss_pred HHHHHHHHHHhcCCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH--------CCCCEEEEEeccHHHHHh
Confidence 9999999999996 8999 666667 888876665 233333332 357999999997 77788
Q ss_pred ccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 286 TDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|||| ++|++|+|++.|++++++.++
T Consensus 1511 ~DrI-lVLd~G~VvE~Gt~~eLl~~~ 1535 (1560)
T PTZ00243 1511 YDKI-IVMDHGAVAEMGSPRELVMNR 1535 (1560)
T ss_pred CCEE-EEEECCEEEEECCHHHHHhCC
Confidence 9999 579999999999999998754
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=286.25 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=136.7
Q ss_pred EEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 72 lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++++|++++|+.. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~~~~-----l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (178)
T cd03247 1 LSINNVSFSYPEQEQQV-----LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVSDLE 70 (178)
T ss_pred CEEEEEEEEeCCCCccc-----eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHHHHH
Confidence 5789999999643 234 999999999999999999999999999999999999 99999999997
Q ss_pred ---eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 015952 145 ---VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (397)
Q Consensus 145 ---~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P 221 (397)
++.++|+||++.+++ .|++||+ +..|||||+||++||||++.+|
T Consensus 71 ~~~~~~i~~~~q~~~~~~----~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p 117 (178)
T cd03247 71 KALSSLISVLNQRPYLFD----TTLRNNL-----------------------------GRRFSGGERQRLALARILLQDA 117 (178)
T ss_pred HHHHhhEEEEccCCeeec----ccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCC
Confidence 256999999987764 5898886 6789999999999999999999
Q ss_pred CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEee
Q 015952 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 222 ~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~ 300 (397)
++| +||||| ++||..... ...+.+.++ .++.|||++||+ .....|||+ ++|++|++++
T Consensus 118 ~~l--------llDEP~--~~LD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~~~~d~~-~~l~~g~i~~ 176 (178)
T cd03247 118 PIV--------LLDEPT--VGLDPITER--QLLSLIFEV--------LKDKTLIWITHHLTGIEHMDKI-LFLENGKIIM 176 (178)
T ss_pred CEE--------EEECCc--ccCCHHHHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHhCCEE-EEEECCEEEe
Confidence 999 555555 777754433 233444332 247899999995 333579999 5699999987
Q ss_pred eC
Q 015952 301 IP 302 (397)
Q Consensus 301 ~g 302 (397)
.|
T Consensus 177 ~~ 178 (178)
T cd03247 177 QG 178 (178)
T ss_pred cC
Confidence 54
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=363.37 Aligned_cols=227 Identities=11% Similarity=0.122 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECC
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 111 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGp 111 (397)
..+..++.++.+.+|+.++++.+++.+.. ....|+++||+|+|+.+....+ |+|+||+|++|+++||+||
T Consensus 343 ~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~ 419 (1466)
T PTZ00265 343 PNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGE 419 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECC
Confidence 35567777888999999999877653211 1125899999999964321122 9999999999999999999
Q ss_pred CCCcHHHHHHHHHcccCCCCCCCcccEEEEC-ce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC----
Q 015952 112 KGSGKSSLVNRISKVFENDKFASERAQVTYN-SS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA---- 176 (397)
Q Consensus 112 nGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~-G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~---- 176 (397)
||||||||+++|+|+++ |++|+|.++ |. ++.||||+|++.+|. .|+.||+.++...
T Consensus 420 SGsGKSTLl~lL~gl~~-----p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~----~TI~eNI~~g~~~~~~~ 490 (1466)
T PTZ00265 420 SGCGKSTILKLIERLYD-----PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS----NSIKNNIKYSLYSLKDL 490 (1466)
T ss_pred CCCCHHHHHHHHHHhcc-----CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh----ccHHHHHHhcCCCcccc
Confidence 99999999999999999 999999995 44 357999999999986 5999999986410
Q ss_pred ---------------------------------------------------hhhHHHHHHHHHHHCCCccc---------
Q 015952 177 ---------------------------------------------------SDNINMIKLWIMEGVRHGEL--------- 196 (397)
Q Consensus 177 ---------------------------------------------------~~~~~~~~~~ll~~vgl~~~--------- 196 (397)
.....+.+.++++.+++++.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~d 570 (1466)
T PTZ00265 491 EALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYE 570 (1466)
T ss_pred chhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccC
Confidence 00112446667777776322
Q ss_pred ---ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 197 ---VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 197 ---~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
..++.+||||||||++|||||+++|+|| +||||| ++||+.+.. ...+.+.++. ..+|+|
T Consensus 571 T~vg~~g~~LSGGQkQRiaIARAll~~P~IL--------lLDEpT--SaLD~~se~--~i~~~L~~~~------~~~g~T 632 (1466)
T PTZ00265 571 TLVGSNASKLSGGQKQRISIARAIIRNPKIL--------ILDEAT--SSLDNKSEY--LVQKTINNLK------GNENRI 632 (1466)
T ss_pred ceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE--------EEeCcc--cccCHHHHH--HHHHHHHHHh------hcCCCE
Confidence 2456789999999999999999999999 666667 888866554 2334443321 125899
Q ss_pred EEEEech-hHHccccEEEEEeeCC
Q 015952 274 VVVVTHG-DLLSLTDRARIRTYLG 296 (397)
Q Consensus 274 VIivTH~-~~~~~aDrI~v~l~~G 296 (397)
+|+|||+ ...+.||+| ++|++|
T Consensus 633 vIiIsHrls~i~~aD~I-ivl~~g 655 (1466)
T PTZ00265 633 TIIIAHRLSTIRYANTI-FVLSNR 655 (1466)
T ss_pred EEEEeCCHHHHHhCCEE-EEEeCC
Confidence 9999996 556899999 569886
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=296.14 Aligned_cols=207 Identities=17% Similarity=0.177 Sum_probs=174.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
|++++||+|+|+. +.+ |+++|++|++|.+++|+||||||||||+.++++|++ .++|+|.++|.
T Consensus 1 MI~i~nv~K~y~~-~~v-----l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~~~ 69 (252)
T COG4604 1 MITIENVSKSYGT-KVV-----LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTSTP 69 (252)
T ss_pred CeeehhhhHhhCC-EEe-----eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeecccCC
Confidence 6899999999963 335 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaI 213 (397)
.++++.+-|+..+.. .+||+|-+.|+.. ...+.+..+.++++-++|..+ .++..+||||||||..|
T Consensus 70 s~~LAk~lSILkQ~N~i~~---rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfI 146 (252)
T COG4604 70 SKELAKKLSILKQENHINS---RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFI 146 (252)
T ss_pred hHHHHHHHHHHHhhchhhh---eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhh
Confidence 256778888877655 5899999999876 345667889999999999654 56678899999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
|..++.+.+.+++||| ++.||..-. .+.++.++++. .+-|+||++|-|| ++..|+|.| |
T Consensus 147 AMVlaQdTdyvlLDEP----------LNNLDmkHs--v~iMk~Lrrla------~el~KtiviVlHDINfAS~YsD~I-V 207 (252)
T COG4604 147 AMVLAQDTDYVLLDEP----------LNNLDMKHS--VQIMKILRRLA------DELGKTIVVVLHDINFASCYSDHI-V 207 (252)
T ss_pred heeeeccCcEEEecCc----------ccccchHHH--HHHHHHHHHHH------HHhCCeEEEEEecccHHHhhhhhe-e
Confidence 9999999999966666 477774332 24455554432 3469999999996 999999999 6
Q ss_pred EeeCCEEeeeCCcccccCC
Q 015952 292 RTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~ 310 (397)
-|++|+++..|++++++..
T Consensus 208 AlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 208 ALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eecCCEEEecCCHHHhcCH
Confidence 8999999999999999854
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=290.88 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=141.0
Q ss_pred EEEEeEEEEECCC----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCc
Q 015952 72 TDAKNKILSYTPG----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (397)
Q Consensus 72 lel~nvs~~Y~~~----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ 147 (397)
++++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~i-----l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g---~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT-----LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG---S 67 (204)
T ss_pred CEEeEEEEecCCCCccccce-----eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC---E
Confidence 5799999999643 234 999999999999999999999999999999999999 9999999999 6
Q ss_pred EEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-----------c-ccccCCCCCChHHHHHHHHHH
Q 015952 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-----------G-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 148 ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-----------~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
|+|++|++.+++ .|+.||+.+...... ....++++.+++ . ....++.++|+|||||++|||
T Consensus 68 i~~~~q~~~l~~----~t~~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 68 IAYVSQEPWIQN----GTIRENILFGKPFDE---ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEEEecCchhcc----CcHHHHhccCCCcCH---HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999998875 799999988644211 112223333332 1 123456789999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHH-HHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV-ATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i-~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
||+.+|+++ +||||| ++||..... ...+.+ .+. .++|+|||++||+ .+.. ||++ ++
T Consensus 141 al~~~p~ll--------llDEP~--~~LD~~~~~--~l~~~ll~~~-------~~~~~tvi~~sh~~~~~~~-~d~i-~~ 199 (204)
T cd03250 141 AVYSDADIY--------LLDDPL--SAVDAHVGR--HIFENCILGL-------LLNNKTRILVTHQLQLLPH-ADQI-VV 199 (204)
T ss_pred HHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHHh-------ccCCCEEEEEeCCHHHHhh-CCEE-EE
Confidence 999999999 555556 778754433 122222 211 2358999999995 5555 9999 56
Q ss_pred eeCCE
Q 015952 293 TYLGE 297 (397)
Q Consensus 293 l~~G~ 297 (397)
|++|+
T Consensus 200 l~~G~ 204 (204)
T cd03250 200 LDNGR 204 (204)
T ss_pred EeCCC
Confidence 99884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=292.11 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=147.0
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (198)
T TIGR01189 1 LAARNLACSRGE-RML-----FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQRD 69 (198)
T ss_pred CEEEEEEEEECC-EEE-----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccchH
Confidence 578999999963 334 999999999999999999999999999999999999 999999999973
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P 221 (397)
+.++|++|++.+++ .+|+.+|+.+...........+.++++.+++. ....++.+||||||||++||||++.+|
T Consensus 70 ~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 70 EPHRNILYLGHLPGLKP---ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred HhhhheEEeccCccccc---CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 57999999987765 58999999875321111134577899999994 456678899999999999999999999
Q ss_pred CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEechhHHccccEE
Q 015952 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRA 289 (397)
Q Consensus 222 ~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~~~~~aDrI 289 (397)
+++ +||||| ++||..... ...+.+.+. .++|.|||++||+...-.|+|+
T Consensus 147 ~ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~sH~~~~~~~~~~ 195 (198)
T TIGR01189 147 PLW--------ILDEPT--TALDKAGVA--LLAGLLRAH-------LARGGIVLLTTHQDLGLVEARE 195 (198)
T ss_pred CEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEEcccccccceEE
Confidence 999 555556 777754333 233344332 2468899999997666667887
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=285.55 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=134.0
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|++ ..+ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (173)
T cd03230 1 IEVRNLSKRYGK-KTA-----LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKEPE 69 (173)
T ss_pred CEEEEEEEEECC-eee-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcccchH
Confidence 478999999963 334 999999999999999999999999999999999999 999999999972
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
+.++|+||++.++. .+|+.||+. |||||+||++|||||+.+|+
T Consensus 70 ~~~~~i~~~~q~~~~~~---~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 70 EVKRRIGYLPEEPSLYE---NLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred hhhccEEEEecCCcccc---CCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 46999999988776 579999873 99999999999999999999
Q ss_pred eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEE
Q 015952 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 223 iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~i 298 (397)
++++ |||| ++||..... ...+.+.++ .++|.|+|++||+ ++..+||++ ++|++|++
T Consensus 116 illl--------DEPt--~~LD~~~~~--~l~~~l~~~-------~~~g~tiii~th~~~~~~~~~d~i-~~l~~g~i 173 (173)
T cd03230 116 LLIL--------DEPT--SGLDPESRR--EFWELLREL-------KKEGKTILLSSHILEEAERLCDRV-AILNNGRI 173 (173)
T ss_pred EEEE--------eCCc--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEECCCHHHHHHhCCEE-EEEeCCCC
Confidence 9955 5555 666654433 334444433 1348999999995 677799999 56999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=333.86 Aligned_cols=196 Identities=13% Similarity=0.108 Sum_probs=156.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++|++++|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..+
T Consensus 338 ~~~l~~~~ls~~~~~--~~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~~i 402 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--FS-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---LKI 402 (590)
T ss_pred ceEEEEcceEEEECC--EE-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---eeE
Confidence 458999999999952 23 899999999999999999999999999999999999 999999986 479
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
+|++|++.++. .+||.||+.++..... ....+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 403 ~y~~Q~~~~~~---~~tv~e~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll--- 475 (590)
T PRK13409 403 SYKPQYIKPDY---DGTVEDLLRSITDDLG-SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY--- 475 (590)
T ss_pred EEecccccCCC---CCcHHHHHHHHhhhcC-hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE---
Confidence 99999987654 6899999987532111 123567899999994 456778999999999999999999999999
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCC
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||+ ++|+ |++...|+
T Consensus 476 -----LLDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tviivsHD~~~~~~~aDrv-ivl~-~~~~~~g~ 536 (590)
T PRK13409 476 -----LLDEPS--AHLDVEQRL--AVAKAIRRIA------EEREATALVVDHDIYMIDYISDRL-MVFE-GEPGKHGH 536 (590)
T ss_pred -----EEeCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEc-Ccceeeee
Confidence 555556 777755443 3344444431 2358999999996 788999999 5575 58777776
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=296.45 Aligned_cols=195 Identities=17% Similarity=0.216 Sum_probs=149.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
+.++|+++.|+. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|... .+.
T Consensus 23 l~~~~~~~~~~~-~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~--~~~ 89 (224)
T cd03220 23 LGILGRKGEVGE-FWA-----LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVS--SLL 89 (224)
T ss_pred hhhhhhhhhcCC-eEE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEc--hhh
Confidence 678888888853 334 999999999999999999999999999999999999 9999999999742 112
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEee
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLll 226 (397)
.+...+++ .+|+.||+.++.. .....++.+.++++.+++.. ....+.+||||||||++|||||+.+|++|
T Consensus 90 ~~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll-- 164 (224)
T cd03220 90 GLGGGFNP---ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL-- 164 (224)
T ss_pred cccccCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 12223333 5799999976532 22334456778899999944 45667899999999999999999999999
Q ss_pred ccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeC
Q 015952 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 227 DEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g 302 (397)
+||||| ++||..... ...+.+.+. .++|+|||++||+ ++..+||++ ++|++|+++..|
T Consensus 165 ------llDEP~--~gLD~~~~~--~~~~~l~~~-------~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g 224 (224)
T cd03220 165 ------LIDEVL--AVGDAAFQE--KCQRRLREL-------LKQGKTVILVSHDPSSIKRLCDRA-LVLEKGKIRFDG 224 (224)
T ss_pred ------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEecC
Confidence 555555 777754433 233444332 1347899999995 778899999 569999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=332.01 Aligned_cols=203 Identities=13% Similarity=0.069 Sum_probs=161.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
++||+++||+++|+++..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..+
T Consensus 4 ~~~l~i~~l~~~y~~~~~i-----l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~-~~i 72 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG-IKV 72 (556)
T ss_pred cEEEEEeeEEEEeCCCCee-----eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEE
Confidence 4589999999999623335 999999999999999999999999999999999999 99999999763 579
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCC-----------------h-----------------------hhHHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDA-----------------S-----------------------DNINMIKLWIM 188 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~-----------------~-----------------------~~~~~~~~~ll 188 (397)
||+||++.+++ .+|+.||+.++... . .+...++.+++
T Consensus 73 ~~v~Q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 73 GYLPQEPQLDP---EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred EEEecCCCCCC---CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999998776 68999999764210 0 01134577889
Q ss_pred HHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc
Q 015952 189 EGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF 268 (397)
Q Consensus 189 ~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~ 268 (397)
+.+|+....+++.+|||||||||+|||||+.+|++| +||||| ++||+.... .+.+++ .
T Consensus 150 ~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vl--------LLDEPt--~~LD~~~~~------~l~~~L----~-- 207 (556)
T PRK11819 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDML--------LLDEPT--NHLDAESVA------WLEQFL----H-- 207 (556)
T ss_pred HhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEE--------EEcCCC--CcCChHHHH------HHHHHH----H--
Confidence 999996556778899999999999999999999999 555556 777754433 333332 1
Q ss_pred cCCceEEEEech--hHHccccEEEEEeeCCEEe-eeCCccccc
Q 015952 269 RDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GIPPAKQIF 308 (397)
Q Consensus 269 ~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g~~~el~ 308 (397)
+.+.|||+|||+ ++..+||+| ++|++|+++ ..|+.+++.
T Consensus 208 ~~~~tviiisHd~~~~~~~~d~i-~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 208 DYPGTVVAVTHDRYFLDNVAGWI-LELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred hCCCeEEEEeCCHHHHHhhcCeE-EEEeCCEEEEecCCHHHHH
Confidence 112499999995 788999999 579999986 677776654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=330.01 Aligned_cols=229 Identities=9% Similarity=0.120 Sum_probs=172.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhcccc---cc---cc----------CCCCeEEEEeEEEEECCC----ceEeeccCce
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYD---QL---RT----------RIGSLTDAKNKILSYTPG----AWIENVGGMT 94 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~----------~~~~~lel~nvs~~Y~~~----~~v~~~~~L~ 94 (397)
......+..++.++.+.+|+.++++..+ .. +. .....++++||+|+|++. .++ |+
T Consensus 285 ~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~-----l~ 359 (555)
T TIGR01194 285 EMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA-----LG 359 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce-----ec
Confidence 3455567778888889999999975311 11 10 012358999999999642 124 99
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCc
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSF 164 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~l 164 (397)
|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ++.++||+|++.+|. -
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~----~ 430 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD----D 430 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh----h
Confidence 9999999999999999999999999999999999 99999999997 357999999999886 5
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCccc-cc------CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchh
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-VI------RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 237 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~~------~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEp 237 (397)
|+.+|.. .+..++.+.++++.+++++. .. ....||||||||++||||++.+|+++ +||||
T Consensus 431 ti~~n~~-----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~il--------ilDE~ 497 (555)
T TIGR01194 431 LIGPDEG-----EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPIL--------LFDEW 497 (555)
T ss_pred hhhcccc-----cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEE--------EEeCC
Confidence 7888841 12234456778899988442 11 23568999999999999999999999 55555
Q ss_pred hhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeee
Q 015952 238 AVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 238 T~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~ 301 (397)
| ++||+.++. ...+.+.+.. ..+|+|+|+|||+ ...+.||+| ++|++|++++.
T Consensus 498 t--s~LD~~~~~--~i~~~l~~~~------~~~~~tiiiisH~~~~~~~~d~i-~~l~~G~i~~~ 551 (555)
T TIGR01194 498 A--ADQDPAFKR--FFYEELLPDL------KRQGKTIIIISHDDQYFELADQI-IKLAAGCIVKD 551 (555)
T ss_pred c--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeccHHHHHhCCEE-EEEECCEEEEe
Confidence 6 777755544 1222222110 1368999999996 677899999 57999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=288.59 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=141.2
Q ss_pred eEEEEeEEEEECCC-----ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc--CCCCCCCcccEEEECc
Q 015952 71 LTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS 143 (397)
Q Consensus 71 ~lel~nvs~~Y~~~-----~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~--~~~~~~p~~G~I~i~G 143 (397)
.++++||+++|+.. ..+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~-----l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL-----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc-----eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECC
Confidence 48999999999642 334 99999999999999999999999999999999999 9 9999999999
Q ss_pred ee-------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHH
Q 015952 144 SV-------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 144 ~~-------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA 216 (397)
+. +.++|+||++.++. .+|+.||+.+... . .+|||||+||++||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~---~~t~~~~i~~~~~--------~----------------~~LS~G~~qrv~lara 125 (194)
T cd03213 73 RPLDKRSFRKIIGYVPQDDILHP---TLTVRETLMFAAK--------L----------------RGLSGGERKRVSIALE 125 (194)
T ss_pred EeCchHhhhheEEEccCcccCCC---CCcHHHHHHHHHH--------h----------------ccCCHHHHHHHHHHHH
Confidence 73 56999999988765 5899999865310 0 0899999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEe
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRT 293 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l 293 (397)
|+.+|+++++ |||| ++||..... ...+.+.++ .++|+|+|++||+ ++..+||++ ++|
T Consensus 126 l~~~p~illl--------DEP~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sh~~~~~~~~~~d~v-~~l 185 (194)
T cd03213 126 LVSNPSLLFL--------DEPT--SGLDSSSAL--QVMSLLRRL-------ADTGRTIICSIHQPSSEIFELFDKL-LLL 185 (194)
T ss_pred HHcCCCEEEE--------eCCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCchHHHHHhcCEE-EEE
Confidence 9999999955 5555 677754433 233444332 1358999999995 467889999 569
Q ss_pred eCCEEeeeC
Q 015952 294 YLGELLGIP 302 (397)
Q Consensus 294 ~~G~iv~~g 302 (397)
++|+++..|
T Consensus 186 ~~G~i~~~~ 194 (194)
T cd03213 186 SQGRVIYFG 194 (194)
T ss_pred eCCEEEecC
Confidence 999998653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=291.27 Aligned_cols=189 Identities=12% Similarity=0.145 Sum_probs=147.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (207)
T PRK13539 2 MLEGEDLACVRGG-RVL-----FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDDPD 70 (207)
T ss_pred EEEEEeEEEEECC-eEE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcchh
Confidence 6899999999963 334 999999999999999999999999999999999999 999999999963
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
..++|++|++.++. .+|+.+|+.+.........+.+.++++.+++.. ...++.++|||||||++|||||+.+|+
T Consensus 71 ~~~~~~~~~~~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 71 VAEACHYLGHRNAMKP---ALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hHhhcEEecCCCcCCC---CCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 35899998877655 589999997643211111245788999999943 456678899999999999999999999
Q ss_pred eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee
Q 015952 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 223 iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
+| +||||| ++||..... ...+.+.++ .++|+|||++||+ ..... |++ +.+.
T Consensus 148 ll--------llDEPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sH~~~~~~~-~~~-~~~~ 199 (207)
T PRK13539 148 IW--------ILDEPT--AALDAAAVA--LFAELIRAH-------LAQGGIVIAATHIPLGLPG-ARE-LDLG 199 (207)
T ss_pred EE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCchhhcc-CcE-Eeec
Confidence 99 555556 777755443 233444332 2458999999996 33333 888 5553
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=330.77 Aligned_cols=201 Identities=14% Similarity=0.127 Sum_probs=155.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ...+
T Consensus 322 ~~~l~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~~i 389 (556)
T PRK11819 322 DKVIEAENLSKSFGD-RLL-----IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TVKL 389 (556)
T ss_pred CeEEEEEeEEEEECC-eee-----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ceEE
Confidence 358999999999963 335 999999999999999999999999999999999999 9999999954 4479
Q ss_pred EEEecCC-CCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 149 TYFLQEY-TIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 149 g~v~Q~~-~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
||++|++ .++. .+|+.+|+.++... .......+..+++.+++. . ..+++.+|||||||||+|||||+.+|++
T Consensus 390 ~~v~q~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 466 (556)
T PRK11819 390 AYVDQSRDALDP---NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV 466 (556)
T ss_pred EEEeCchhhcCC---CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999996 4554 68999999876421 111122345789999994 3 4677899999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC-CEEe-
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL-GELL- 299 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~-G~iv- 299 (397)
| +||||| ++||..... .+.+++ ... .| |||+|||+ ++..+|||+ ++|++ |++.
T Consensus 467 l--------lLDEPt--~~LD~~~~~------~l~~~l----~~~-~~-tvi~vtHd~~~~~~~~d~i-~~l~~~g~~~~ 523 (556)
T PRK11819 467 L--------LLDEPT--NDLDVETLR------ALEEAL----LEF-PG-CAVVISHDRWFLDRIATHI-LAFEGDSQVEW 523 (556)
T ss_pred E--------EEcCCC--CCCCHHHHH------HHHHHH----HhC-CC-eEEEEECCHHHHHHhCCEE-EEEECCCeEEE
Confidence 9 555556 677754433 333332 111 24 89999995 788999999 56986 7876
Q ss_pred eeCCcccc
Q 015952 300 GIPPAKQI 307 (397)
Q Consensus 300 ~~g~~~el 307 (397)
..|+.+++
T Consensus 524 ~~g~~~~~ 531 (556)
T PRK11819 524 FEGNFQEY 531 (556)
T ss_pred ecCCHHHH
Confidence 35655544
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=289.90 Aligned_cols=185 Identities=13% Similarity=0.077 Sum_probs=146.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~-~~i-----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~~~ 69 (200)
T PRK13540 1 MLDVIELDFDYHD-QPL-----LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKKDL 69 (200)
T ss_pred CEEEEEEEEEeCC-eeE-----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCccccCH
Confidence 5899999999963 335 999999999999999999999999999999999999 99999999996
Q ss_pred ---eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCC
Q 015952 145 ---VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 145 ---~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
++.++|++|++.+++ .+|+.+|+.++..... ....+.++++.+++.+ ...++.+|||||+||++||||++.+
T Consensus 70 ~~~~~~i~~~~q~~~~~~---~~tv~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 70 CTYQKQLCFVGHRSGINP---YLTLRENCLYDIHFSP-GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred HHHHhheEEeccccccCc---CCCHHHHHHHHHhcCc-chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 247999999988765 5899999987642111 1346788999999954 3455678999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
|++|++ |||| ++||..... ...+.+.++ .++|.|||++||+ .....||.-
T Consensus 146 p~~lil--------DEP~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 146 AKLWLL--------DEPL--VALDELSLL--TIITKIQEH-------RAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred CCEEEE--------eCCC--cccCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCchhccccchh
Confidence 999955 5555 667644333 233333332 2468999999995 666778876
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=285.91 Aligned_cols=165 Identities=14% Similarity=0.216 Sum_probs=135.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.++++++|++++| + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (182)
T cd03215 2 EPVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR 66 (182)
T ss_pred CcEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc
Confidence 3589999999998 4 999999999999999999999999999999999999 99999999995
Q ss_pred -------eCcEEEEecCCC---CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHH
Q 015952 145 -------VGDGTYFLQEYT---IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 145 -------~~~ig~v~Q~~~---l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIA 214 (397)
++.++|+||++. +++ .+|+.||+.++.. ||||||||++||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~~---~~t~~e~l~~~~~---------------------------LS~G~~qrl~la 116 (182)
T cd03215 67 RSPRDAIRAGIAYVPEDRKREGLVL---DLSVAENIALSSL---------------------------LSGGNQQKVVLA 116 (182)
T ss_pred cCHHHHHhCCeEEecCCcccCcccC---CCcHHHHHHHHhh---------------------------cCHHHHHHHHHH
Confidence 246999999853 443 5799999876421 999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++|||||| | ++||+.... ...+.+.++ .++|+|+|++||+ ++.++||++ ++
T Consensus 117 ~al~~~p~llllDEP--------~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sh~~~~~~~~~d~v-~~ 176 (182)
T cd03215 117 RWLARDPRVLILDEP--------T--RGVDVGAKA--EIYRLIREL-------ADAGKAVLLISSELDELLGLCDRI-LV 176 (182)
T ss_pred HHHccCCCEEEECCC--------C--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-EE
Confidence 999999999955555 5 677754443 233334332 1358999999995 788999999 56
Q ss_pred eeCCEE
Q 015952 293 TYLGEL 298 (397)
Q Consensus 293 l~~G~i 298 (397)
|++|++
T Consensus 177 l~~G~i 182 (182)
T cd03215 177 MYEGRI 182 (182)
T ss_pred ecCCcC
Confidence 999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=329.64 Aligned_cols=198 Identities=13% Similarity=0.125 Sum_probs=153.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ...|
T Consensus 320 ~~~l~~~~l~~~~~~-~~~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~~i 387 (552)
T TIGR03719 320 DKVIEAENLSKGFGD-KLL-----IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TVKL 387 (552)
T ss_pred CeEEEEeeEEEEECC-eee-----eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ceEE
Confidence 458999999999963 335 999999999999999999999999999999999999 9999999954 4479
Q ss_pred EEEecCCC-CCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 149 TYFLQEYT-IPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 149 g~v~Q~~~-l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
||++|++. +++ .+|+.||+.++.. ........+.++++.+++. . ..+++.+|||||||||+|||||+.+|++
T Consensus 388 ~~v~q~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 388 AYVDQSRDALDP---NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred EEEeCCccccCC---CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 99999963 554 5899999987643 1111122355789999994 3 4677899999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC-CEEee
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL-GELLG 300 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~-G~iv~ 300 (397)
| +||||| ++||..... .+.+++ ... .+ |||+|||+ ++..+|||+ ++|++ |+++.
T Consensus 465 l--------lLDEPt--~~LD~~~~~------~l~~~l----~~~-~~-~viivsHd~~~~~~~~d~i-~~l~~~~~~~~ 521 (552)
T TIGR03719 465 L--------LLDEPT--NDLDVETLR------ALEEAL----LEF-AG-CAVVISHDRWFLDRIATHI-LAFEGDSHVEW 521 (552)
T ss_pred E--------EEeCCC--CCCCHHHHH------HHHHHH----HHC-CC-eEEEEeCCHHHHHHhCCEE-EEEECCCeEEE
Confidence 9 555556 777754433 333332 111 23 89999995 788999999 56986 57763
Q ss_pred -eCCc
Q 015952 301 -IPPA 304 (397)
Q Consensus 301 -~g~~ 304 (397)
.|+.
T Consensus 522 ~~g~~ 526 (552)
T TIGR03719 522 FEGNY 526 (552)
T ss_pred eCCCH
Confidence 3443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=327.32 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=161.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~ 150 (397)
||+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..+||
T Consensus 1 ml~i~~ls~~~~~-~~i-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFGA-KPL-----FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPN-ERLGK 68 (530)
T ss_pred CEEEEEEEEEeCC-cEe-----EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEEEE
Confidence 5899999999963 335 999999999999999999999999999999999999 99999999984 46999
Q ss_pred EecCCCCCCCCCCccHHHHHhcCCCC------------------------------------hhhHHHHHHHHHHHCCCc
Q 015952 151 FLQEYTIPRGSNSFSLYDTRSLSDDA------------------------------------SDNINMIKLWIMEGVRHG 194 (397)
Q Consensus 151 v~Q~~~l~~~~~~ltv~eni~~~~~~------------------------------------~~~~~~~~~~ll~~vgl~ 194 (397)
++|++.++. .+|+.||+.++... ..+.+.++.++++.+|+.
T Consensus 69 ~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 145 (530)
T PRK15064 69 LRQDQFAFE---EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145 (530)
T ss_pred EeccCCcCC---CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 999987765 68999998764310 001234677899999995
Q ss_pred c-c-ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 195 E-L-VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 195 ~-~-~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
. . ..++.+|||||||||+|||||+.+|++| +||||| ++||+.... .+.+++ .+.|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lL--------lLDEPt--~~LD~~~~~------~l~~~l------~~~~~ 203 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDIL--------LLDEPT--NNLDINTIR------WLEDVL------NERNS 203 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEE--------EEcCCC--cccCHHHHH------HHHHHH------HhCCC
Confidence 4 3 3457899999999999999999999999 555556 777754433 333332 13488
Q ss_pred eEEEEech--hHHccccEEEEEeeCCEEe-eeCCcccccC
Q 015952 273 PVVVVTHG--DLLSLTDRARIRTYLGELL-GIPPAKQIFD 309 (397)
Q Consensus 273 TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g~~~el~~ 309 (397)
|||+|||+ .+.++|||| ++|++|+++ ..|+++++..
T Consensus 204 tiiivsHd~~~~~~~~d~i-~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 204 TMIIISHDRHFLNSVCTHM-ADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred eEEEEeCCHHHHHhhcceE-EEEeCCEEEEecCCHHHHHH
Confidence 99999995 788999999 579999994 7888877654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=288.03 Aligned_cols=188 Identities=16% Similarity=0.145 Sum_probs=143.3
Q ss_pred CeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+.++||+|.|+.++ ...+ |+++||+|++|++++|+||||||||||+++|+|++++.. |++|+|.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~ 76 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKE 76 (202)
T ss_pred ceEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECcc
Confidence 3578999999996431 1123 999999999999999999999999999999999987222 579999999972
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.++|+||++.++. .+||.||+.+..... ...++.+|||||+||++|||||+.
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 77 FAEKYPGEIIYVSEEDVHFP---TLTVRETLDFALRCK------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred chhhhcceEEEEecccccCC---CCcHHHHHhhhhhhc------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 46999999987765 589999997653100 345578899999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe-ch--hHHccccEEEEEeeCC
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT-HG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT-H~--~~~~~aDrI~v~l~~G 296 (397)
+|++| +||||| ++||..... ...+.+.++. .+.+.|+|++| |+ ++.++||++ ++|++|
T Consensus 136 ~p~ll--------llDEPt--~~LD~~~~~--~~~~~l~~~~------~~~~~t~ii~~~h~~~~~~~~~d~i-~~l~~G 196 (202)
T cd03233 136 RASVL--------CWDNST--RGLDSSTAL--EILKCIRTMA------DVLKTTTFVSLYQASDEIYDLFDKV-LVLYEG 196 (202)
T ss_pred CCCEE--------EEcCCC--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEEcCCHHHHHHhCCeE-EEEECC
Confidence 99999 555555 777755443 2334443331 12356766655 43 788999999 579999
Q ss_pred EEeeeC
Q 015952 297 ELLGIP 302 (397)
Q Consensus 297 ~iv~~g 302 (397)
+++..|
T Consensus 197 ~i~~~g 202 (202)
T cd03233 197 RQIYYG 202 (202)
T ss_pred EEEecC
Confidence 998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=280.25 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=132.4
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
++++|++++|+.+..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~~~~~-----l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~-~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVL-----LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG-EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCee-----eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-ceEEEE
Confidence 4789999999644435 999999999999999999999999999999999999 99999999984 679999
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccc
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~ 231 (397)
+|++.++. .|+.||+.++ ++.+||||||||++|||||+.+|+++
T Consensus 70 ~q~~~~~~----~tv~~nl~~~-------------------------~~~~LS~G~~~rv~laral~~~p~~l------- 113 (166)
T cd03223 70 PQRPYLPL----GTLREQLIYP-------------------------WDDVLSGGEQQRLAFARLLLHKPKFV------- 113 (166)
T ss_pred CCCCcccc----ccHHHHhhcc-------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE-------
Confidence 99987653 7999998753 36789999999999999999999999
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCC
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLG 296 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G 296 (397)
+||||| ++||..... .+.+++ . +.++|+|++||+ ....+||++ ++|+++
T Consensus 114 -llDEPt--~~LD~~~~~------~l~~~l----~--~~~~tiiivsh~~~~~~~~d~i-~~l~~~ 163 (166)
T cd03223 114 -FLDEAT--SALDEESED------RLYQLL----K--ELGITVISVGHRPSLWKFHDRV-LDLDGE 163 (166)
T ss_pred -EEECCc--cccCHHHHH------HHHHHH----H--HhCCEEEEEeCChhHHhhCCEE-EEEcCC
Confidence 555555 677754333 333332 1 125899999996 556799999 457765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=286.66 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=141.0
Q ss_pred CeEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 70 SLTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
.+++++|+++.|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|++... |++|+|.++|+.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~ 73 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL-----LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPL 73 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe-----EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEeh
Confidence 478999999999642 334 99999999999999999999999999999999986211 799999999963
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
+.++|++|++.++. .+|+.||+.++.. ++ +|||||+||++|||||+.+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~------------~~------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 74 DKNFQRSTGYVEQQDVHSP---NLTVREALRFSAL------------LR------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred HHHhhhceEEecccCcccc---CCcHHHHHHHHHH------------Hh------------cCCHHHhHHHHHHHHHhcC
Confidence 57999999988766 5899999876310 00 8999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEeeC-C
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRTYL-G 296 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l~~-G 296 (397)
|++|++||| | ++||..... ...+.+.++ .++|+|||++||+ .+..+|||+ ++|++ |
T Consensus 127 p~vlllDEP--------~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiiivtH~~~~~~~~~~d~i-~~l~~~g 186 (192)
T cd03232 127 PSILFLDEP--------T--SGLDSQAAY--NIVRFLKKL-------ADSGQAILCTIHQPSASIFEKFDRL-LLLKRGG 186 (192)
T ss_pred CcEEEEeCC--------C--cCCCHHHHH--HHHHHHHHH-------HHcCCEEEEEEcCChHHHHhhCCEE-EEEcCCC
Confidence 999955555 5 666644433 233444332 1358999999995 357899999 56998 9
Q ss_pred EEeeeC
Q 015952 297 ELLGIP 302 (397)
Q Consensus 297 ~iv~~g 302 (397)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=282.55 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=131.3
Q ss_pred EEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 72 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 72 lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++++|++++|+.+ ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~l~~~~~~~~~~~-----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 1 LEVENVSFRYPGAEPPV-----LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQWD 70 (173)
T ss_pred CEEEEEEEEcCCCCCcc-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcccCC
Confidence 4789999999642 224 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
++.++|++|++.+++ .|+.||+ ||||||||++|||||+.+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~----~tv~~~l--------------------------------LS~G~~qrv~la~al~~~ 114 (173)
T cd03246 71 PNELGDHVGYLPQDDELFS----GSIAENI--------------------------------LSGGQRQRLGLARALYGN 114 (173)
T ss_pred HHHHHhheEEECCCCcccc----CcHHHHC--------------------------------cCHHHHHHHHHHHHHhcC
Confidence 357999999987765 4999887 999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~i 298 (397)
|+++|+| ||| ++||..... ...+.+.++ .++|+|||++||+ ....+||++ ++|++|++
T Consensus 115 p~~lllD--------EPt--~~LD~~~~~--~l~~~l~~~-------~~~~~tii~~sh~~~~~~~~d~v-~~l~~G~i 173 (173)
T cd03246 115 PRILVLD--------EPN--SHLDVEGER--ALNQAIAAL-------KAAGATRIVIAHRPETLASADRI-LVLEDGRV 173 (173)
T ss_pred CCEEEEE--------CCc--cccCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHhCCEE-EEEECCCC
Confidence 9999555 455 666654433 233444332 1358999999995 444689999 56999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=298.11 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=161.2
Q ss_pred eEEEEeEEEEECCCc--------------eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc
Q 015952 71 LTDAKNKILSYTPGA--------------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~--------------~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~ 136 (397)
-++++||+++|...+ ......+|+++||+|++|++++|+||||||||||+++|+|+++ |++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~ 78 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTV 78 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCc
Confidence 478999999985310 0011223899999999999999999999999999999999999 999
Q ss_pred cEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHH
Q 015952 137 AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMR 211 (397)
Q Consensus 137 G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRv 211 (397)
|+|.++|. +++++|++.+++ .+|+.+|+.+... ..+.....+..+++.++++. ....+.+|||||+||+
T Consensus 79 G~I~~~g~---~~~~~~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 79 GKVDRNGE---VSVIAISAGLSG---QLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152 (264)
T ss_pred eEEEECCE---EeEEecccCCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 99999995 678888876654 5899999976421 23344455677888889844 4566888999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++|| ||||| ++||+.... ...+.+.++ .+.|+|||++||+ ++..+||++
T Consensus 153 ~Laral~~~p~iLl--------LDEPt--~gLD~~~~~--~l~~~L~~~-------~~~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 153 GFSINITVNPDILV--------IDEAL--SVGDQTFAQ--KCLDKIYEF-------KEQNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred HHHHHHhhCCCEEE--------EeCcc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEcCCHHHHHHHcCEE
Confidence 99999999999994 55555 677744332 233444332 2468999999995 778899999
Q ss_pred EEEeeCCEEeeeCCcccccC
Q 015952 290 RIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|+++..|++++++.
T Consensus 214 -~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 214 -AWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred -EEEECCEEEEeCCHHHHHH
Confidence 5799999999999887764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=298.48 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=161.3
Q ss_pred HHHHHHhccccccccC-----CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 52 AVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 52 ~~~~~~~~~~~~~~~~-----~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+.++++++.+++.+.. ..+.|+++|+++. +..+ |+++||+|++||+++|+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~---~~~v-----L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV---GAPV-----LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccccccCCCCCeEEEEEEEEe---cccc-----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677888877665442 4467999999985 2334 9999999999999999999999999999999999
Q ss_pred cCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc------------
Q 015952 127 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG------------ 194 (397)
Q Consensus 127 ~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~------------ 194 (397)
++ |++|+|.++| .++|++|++.++. .|+.||+.++..... ..+.++++.+++.
T Consensus 87 ~~-----p~~G~I~i~g---~i~yv~q~~~l~~----~tv~enl~~~~~~~~---~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LE-----PSEGKIKHSG---RISFSSQFSWIMP----GTIKENIIFGVSYDE---YRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CC-----CCCcEEEECC---EEEEEeCcccccc----cCHHHHhhcccccCH---HHHHHHHHHhCCHHHHHhccccccc
Confidence 99 9999999998 4999999988775 499999987643111 1122233333331
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 195 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 195 ~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
.....+.+||||||||++|||||+.+|++| +||||| ++||+.... ...+.+.+. ..++.||
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iL--------iLDEPt--~gLD~~~~~--~l~~~ll~~-------~~~~~tI 212 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLY--------LLDSPF--GYLDVFTEK--EIFESCVCK-------LMANKTR 212 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEE--------EEECCC--ccCCHHHHH--HHHHHHHHH-------hhCCCEE
Confidence 112235689999999999999999999999 555556 777754433 122222111 1347899
Q ss_pred EEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 275 VVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 275 IivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
|++||+ .....||++ ++|++|+++..|++++++..
T Consensus 213 iiisH~~~~~~~~d~i-~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 213 ILVTSKMEHLKKADKI-LILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEeCChHHHHhCCEE-EEEECCEEEEECCHHHHHhc
Confidence 999995 334689999 57999999999999887643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=327.08 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=160.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
..|++++||+++|+++..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++ ...|
T Consensus 2 ~~~i~~~nls~~~~~~~~i-----l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~~i 70 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEI-----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAP-GIKV 70 (552)
T ss_pred cEEEEEeeEEEecCCCCee-----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecC-CCEE
Confidence 3589999999999623335 999999999999999999999999999999999999 9999999986 3579
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCC------------------hhh----------------------HHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDA------------------SDN----------------------INMIKLWIM 188 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~------------------~~~----------------------~~~~~~~ll 188 (397)
||++|++.++. .+|+.||+.++... ..+ ...++.+++
T Consensus 71 ~~v~Q~~~~~~---~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 71 GYLPQEPQLDP---TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred EEEeccCCCCC---CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 99999988765 68999999875310 010 123456678
Q ss_pred HHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc
Q 015952 189 EGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF 268 (397)
Q Consensus 189 ~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~ 268 (397)
+.+++.....++.+|||||||||+|||||+.+|++| +||||| ++||+.... .+.+++ .
T Consensus 148 ~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lL--------LLDEPt--~~LD~~~~~------~l~~~L----~-- 205 (552)
T TIGR03719 148 DALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML--------LLDEPT--NHLDAESVA------WLEQHL----Q-- 205 (552)
T ss_pred hhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEE--------EEcCCC--CCCChHHHH------HHHHHH----H--
Confidence 888885456678899999999999999999999999 555556 777754433 333332 1
Q ss_pred cCCceEEEEech--hHHccccEEEEEeeCCEEe-eeCCcccccC
Q 015952 269 RDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GIPPAKQIFD 309 (397)
Q Consensus 269 ~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g~~~el~~ 309 (397)
+.+.|||+|||+ .+..+||++ ++|++|+++ ..|+.+++..
T Consensus 206 ~~~~tvIiisHd~~~~~~~~d~v-~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 206 EYPGTVVAVTHDRYFLDNVAGWI-LELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hCCCeEEEEeCCHHHHHhhcCeE-EEEECCEEEEecCCHHHHHH
Confidence 113599999995 788999999 579999976 6688776553
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=281.22 Aligned_cols=163 Identities=18% Similarity=0.290 Sum_probs=134.0
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------ 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------ 145 (397)
++++|++++|+. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 i~~~~l~~~~~~-~~~-----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 69 (178)
T cd03229 1 LELKNVSKRYGQ-KTV-----LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDLED 69 (178)
T ss_pred CEEEEEEEEECC-eEE-----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccch
Confidence 478999999963 334 999999999999999999999999999999999999 999999999962
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.++|++|++.++. .+|+.||+.+. +|||||||++|||||+.
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~---~~t~~~~l~~~-----------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 70 ELPPLRRRIGMVFQDFALFP---HLTVLENIALG-----------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred hHHHHhhcEEEEecCCccCC---CCCHHHheeec-----------------------------CCHHHHHHHHHHHHHHC
Confidence 46999999988765 57999998653 99999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC-CceEEEEech--hHHccccEEEEEeeCC
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD-DKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~-g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
+|+++ +||||| ++||..... ...+.+.++ .++ |+|+|++||+ ++..+||++ ++|++|
T Consensus 118 ~p~ll--------ilDEP~--~~LD~~~~~--~l~~~l~~~-------~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g 177 (178)
T cd03229 118 DPDVL--------LLDEPT--SALDPITRR--EVRALLKSL-------QAQLGITVVLVTHDLDEAARLADRV-VVLRDG 177 (178)
T ss_pred CCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HHhcCCEEEEEeCCHHHHHHhcCEE-EEEeCC
Confidence 99999 555555 777755443 233344332 133 7999999995 677799999 569887
Q ss_pred E
Q 015952 297 E 297 (397)
Q Consensus 297 ~ 297 (397)
+
T Consensus 178 ~ 178 (178)
T cd03229 178 K 178 (178)
T ss_pred C
Confidence 4
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=286.26 Aligned_cols=173 Identities=18% Similarity=0.142 Sum_probs=137.8
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee----
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~---- 145 (397)
++++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 1 LEIKDLHVSVGG-KEI-----LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITDL 69 (200)
T ss_pred CeEEEEEEEeCC-EEe-----eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCcC
Confidence 478999999963 334 9999999999999999999999999999999999 47 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
..++|+||++.+++ ..++.+++ ...+.+|||||+||++|||||+
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~---~~~~~~~l--------------------------~~~~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 70 PPEERARLGIFLAFQYPPEIP---GVKNADFL--------------------------RYVNEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred CHHHHhhCcEEEeecChhhcc---CccHHHHH--------------------------hhccccCCHHHHHHHHHHHHHh
Confidence 24999999988765 56777665 1113579999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc-cccEEEEEeeC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS-LTDRARIRTYL 295 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~-~aDrI~v~l~~ 295 (397)
.+|+++ +||||| ++||..... ...+.+.++ .++++|||++||+ .+.+ +|||+ ++|++
T Consensus 121 ~~p~il--------llDEPt--~~LD~~~~~--~l~~~L~~~-------~~~~~tiii~sh~~~~~~~~~~d~i-~~l~~ 180 (200)
T cd03217 121 LEPDLA--------ILDEPD--SGLDIDALR--LVAEVINKL-------REEGKSVLIITHYQRLLDYIKPDRV-HVLYD 180 (200)
T ss_pred cCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCHHHHHHhhCCEE-EEEEC
Confidence 999999 555555 777754433 233444332 1358899999995 5555 79999 56999
Q ss_pred CEEeeeCCc
Q 015952 296 GELLGIPPA 304 (397)
Q Consensus 296 G~iv~~g~~ 304 (397)
|++++.|+.
T Consensus 181 G~i~~~~~~ 189 (200)
T cd03217 181 GRIVKSGDK 189 (200)
T ss_pred CEEEEEccH
Confidence 999998844
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=317.93 Aligned_cols=208 Identities=17% Similarity=0.169 Sum_probs=162.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++|++++|+.+....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 19 ~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~- 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL- 89 (549)
T ss_pred cceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee-
Confidence 468999999999965421122 999999999999999999999999999999999999 99999999997533
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
+.+.+.++. .+|+.||+.+... ...+..+.+.++++.+++.. ...++.+||||||||++|||||+.+|++
T Consensus 90 --i~~~~~l~~---~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 90 --IAISSGLNG---QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred --EEeccccCC---CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 333333433 5799999976431 23344556778999999954 5677889999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeee
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~ 301 (397)
||| |||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+||++ ++|++|+++..
T Consensus 165 LLL--------DEPT--sgLD~~sr~--~LlelL~el-------~~~G~TIIIVSHdl~~i~~l~DrI-ivL~~GkIv~~ 224 (549)
T PRK13545 165 LVI--------DEAL--SVGDQTFTK--KCLDKMNEF-------KEQGKTIFFISHSLSQVKSFCTKA-LWLHYGQVKEY 224 (549)
T ss_pred EEE--------ECCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEE
Confidence 955 5555 666644333 233444332 2468999999995 788999999 57999999999
Q ss_pred CCcccccCC
Q 015952 302 PPAKQIFDI 310 (397)
Q Consensus 302 g~~~el~~~ 310 (397)
|++++++..
T Consensus 225 G~~~el~~~ 233 (549)
T PRK13545 225 GDIKEVVDH 233 (549)
T ss_pred CCHHHHHhh
Confidence 999887643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=357.04 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=172.8
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
..+|+++||+|+|+++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~a-----L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPA-----VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSIL 2004 (2272)
T ss_pred CceEEEEEEEEEECCCCceE-----EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECc
Confidence 4589999999999642 324 999999999999999999999999999999999999 999999999962
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaI 213 (397)
+.|||+||++.++. .+|++|++.+... ..++.++.++++++.+++ ...++++.+||||||||++|
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~---~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDD---LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred chHHHHhhhEEEEeccccCCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 46999999988876 6899999987432 234456678889999999 44567789999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v 291 (397)
|+||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++|| +++..+|||++
T Consensus 2082 A~ALi~~P~VL--------LLDEPT--sGLDp~sr~--~l~~lL~~l-------~~~g~TIILtTH~mee~e~lcDrV~- 2141 (2272)
T TIGR01257 2082 AIALIGCPPLV--------LLDEPT--TGMDPQARR--MLWNTIVSI-------IREGRAVVLTSHSMEECEALCTRLA- 2141 (2272)
T ss_pred HHHHhcCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEEE-
Confidence 99999999999 556666 788865544 233444333 245899999999 48999999995
Q ss_pred EeeCCEEeeeCCcccccC
Q 015952 292 RTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~ 309 (397)
+|++|+++..|+++++..
T Consensus 2142 IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2142 IMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred EEECCEEEEECCHHHHHH
Confidence 699999999999988754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=356.35 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=171.1
Q ss_pred CCCeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 68 IGSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
....|+++||+|.|++ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~a-----L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI 994 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPA-----VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDI 994 (2272)
T ss_pred CCceEEEEeEEEEecCCCceE-----EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 3458999999999953 3334 999999999999999999999999999999999999 99999999996
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRva 212 (397)
++.+||+||++.+++ .+||.||+.+... ..++.++.+.++++.++|. ...+++.+||||||||++
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~---~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLs 1071 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFH---HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 356999999988876 6899999988543 2344556788999999994 456778999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ ++|+|||++||+ ++..+||||+
T Consensus 1072 LArALi~~PkVL--------LLDEPT--SGLDp~sr~--~l~~lL~~l--------~~g~TIIltTHdmdea~~laDrI~ 1131 (2272)
T TIGR01257 1072 VAIAFVGDAKVV--------VLDEPT--SGVDPYSRR--SIWDLLLKY--------RSGRTIIMSTHHMDEADLLGDRIA 1131 (2272)
T ss_pred HHHHHHcCCCEE--------EEECCC--cCCCHHHHH--HHHHHHHHH--------hCCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999 556666 777755443 233333322 358999999994 8889999995
Q ss_pred EEeeCCEEeeeCCccccc
Q 015952 291 IRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~ 308 (397)
+|++|+++..|++..+.
T Consensus 1132 -iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1132 -IISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred -EEECCEEEEecCHHHHH
Confidence 69999999999987663
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=284.07 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=141.3
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-------
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------- 145 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------- 145 (397)
.+.|+.++|+.+..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~~~~~~~~~~~~~i-----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 2 QVTNGYFSWGSGLAT-----LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeeeEEecCCCCcc-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCccccccccc
Confidence 578999999654434 999999999999999999999999999999999999 999999999851
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc------------cccCCCCCChH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSL 206 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGG 206 (397)
+.++|++|++.++. .|+.||+.++..... ....++++.+++.+ ...++..+|||
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~----~t~~~nl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 72 ATRSRNRYSVAYAAQKPWLLN----ATVEENITFGSPFNK---QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred ccchhhcceEEEEcCCCcccc----ccHHHHHhhcCcCCH---HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 46999999987764 699999988643211 12234455555421 13457889999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHH-HHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI-VATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~-i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||++|||||+.+|++||+ |||| ++||..... ...+. +.+.+ .+.|.|+|++||+ ....
T Consensus 145 ~~qrv~laral~~~p~illl--------DEPt--~~LD~~~~~--~l~~~~ll~~~------~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 145 QRQRICVARALYQNTNIVFL--------DDPF--SALDIHLSD--HLMQEGILKFL------QDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEE--------eCCc--cccCHHHHH--HHHHHHHHHHH------hcCCCEEEEEeCChHHHh
Confidence 99999999999999999944 5555 666644333 12221 22221 2358999999995 3345
Q ss_pred cccEEEEEeeCCE
Q 015952 285 LTDRARIRTYLGE 297 (397)
Q Consensus 285 ~aDrI~v~l~~G~ 297 (397)
.||++ ++|++|.
T Consensus 207 ~~d~i-~~l~~G~ 218 (218)
T cd03290 207 HADWI-IAMKDGS 218 (218)
T ss_pred hCCEE-EEecCCC
Confidence 79999 5688873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=280.96 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=130.6
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEe
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~ 152 (397)
+++|++++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 1 ~~~~l~~~~~~-~~~-----l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~----- 64 (180)
T cd03214 1 EVENLSVGYGG-RTV-----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLA----- 64 (180)
T ss_pred CeeEEEEEECC-eee-----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-----
Confidence 47899999963 334 999999999999999999999999999999999999 99999999986210
Q ss_pred cCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccc
Q 015952 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (397)
Q Consensus 153 Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~ 231 (397)
+ ... ......+.+ +.++++.+++. ....++.+||||||||++|||||+.+|+++|+||
T Consensus 65 ~---~~~----~~~~~~i~~-----------~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE--- 123 (180)
T cd03214 65 S---LSP----KELARKIAY-----------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDE--- 123 (180)
T ss_pred c---CCH----HHHHHHHhH-----------HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence 0 000 011111111 11178888884 3456688999999999999999999999995555
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeC
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g 302 (397)
|| ++||..... ...+.+.++. .+.+.|+|++||+ ++.++||++ ++|++|+++..|
T Consensus 124 -----P~--~~LD~~~~~--~~~~~l~~~~------~~~~~tiii~sh~~~~~~~~~d~~-~~l~~g~i~~~~ 180 (180)
T cd03214 124 -----PT--SHLDIAHQI--ELLELLRRLA------RERGKTVVMVLHDLNLAARYADRV-ILLKDGRIVAQG 180 (180)
T ss_pred -----Cc--cCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEecC
Confidence 45 667654333 2334443321 1227899999995 677999999 569999997643
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=349.66 Aligned_cols=230 Identities=12% Similarity=0.087 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc-------------------------CCCCeEEEEeEEEEECCC-ceEeeccCce
Q 015952 41 WDSLVDQRRRDAVFREVLQSYDQLRT-------------------------RIGSLTDAKNKILSYTPG-AWIENVGGMT 94 (397)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~lel~nvs~~Y~~~-~~v~~~~~L~ 94 (397)
+..+.....+.+|+.+.++.+++... +....|+++||+++|+++ .++ |+
T Consensus 1162 ~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~v-----L~ 1236 (1490)
T TIGR01271 1162 SIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAV-----LQ 1236 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcce-----ee
Confidence 33445556678899998865544221 012359999999999653 335 99
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCc
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSF 164 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~l 164 (397)
|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.+||. +++++||||+|.+|. -
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~----G 1306 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS----G 1306 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc----c
Confidence 9999999999999999999999999999999986 4799999997 478999999999997 4
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeecccccc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~s 232 (397)
|+++|+..... ...+.+.++++.+++.+. ......||||||||+||||||+++|+||
T Consensus 1307 TIR~NLdp~~~---~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL-------- 1375 (1490)
T TIGR01271 1307 TFRKNLDPYEQ---WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL-------- 1375 (1490)
T ss_pred CHHHHhCcccC---CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE--------
Confidence 99999965432 123456667777777321 1223468999999999999999999999
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
+||||| +++|..++. ...+.+.+. .+++|||+|||+ .....|||| ++|++|+|++.|+|++++.
T Consensus 1376 lLDEaT--S~lD~~Te~--~I~~~L~~~--------~~~~TvI~IaHRl~ti~~~DrI-lvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1376 LLDEPS--AHLDPVTLQ--IIRKTLKQS--------FSNCTVILSEHRVEALLECQQF-LVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCc--ccCCHHHHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHhCCEE-EEEECCEEEEeCCHHHHHc
Confidence 666667 788866654 334444333 367999999996 667779999 5799999999999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=305.97 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=146.4
Q ss_pred EECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----
Q 015952 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---- 175 (397)
Q Consensus 108 LvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---- 175 (397)
|+||||||||||+|+|+|+++ |++|+|.++|+ ++.+||+||++.+++ ++|+.+|+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~~~~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP---HMTVEENVAFGLKMRKV 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCCCCHHHCCEEEEecCccccC---CCcHHHHHHHHHhhcCC
Confidence 689999999999999999999 99999999996 246999999998876 7899999998643
Q ss_pred ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHH
Q 015952 176 ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~ 254 (397)
...+.++++.++++.+++.. ..+++.+|||||||||+|||||+.+|++|||||| | ++||..... ...
T Consensus 73 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP--------~--s~LD~~~~~--~l~ 140 (325)
T TIGR01187 73 PRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEP--------L--SALDKKLRD--QMQ 140 (325)
T ss_pred CHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC--------C--ccCCHHHHH--HHH
Confidence 23344567889999999954 5677899999999999999999999999955555 5 777755443 334
Q ss_pred HHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 255 QIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 255 ~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+.+.++. .+.|+|||+|||+ ++..+|||| ++|++|++++.|++++++..|..
T Consensus 141 ~~l~~l~------~~~g~tiiivTHd~~e~~~~~d~i-~vl~~G~i~~~g~~~~~~~~~~~ 194 (325)
T TIGR01187 141 LELKTIQ------EQLGITFVFVTHDQEEAMTMSDRI-AIMRKGKIAQIGTPEEIYEEPAN 194 (325)
T ss_pred HHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCHHHHHhCCCc
Confidence 4444431 2358999999995 788999999 56999999999999999887653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=286.73 Aligned_cols=185 Identities=16% Similarity=0.139 Sum_probs=146.5
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----eCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----VGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+ ++.++|+||++.++. ...+|+.+|+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~-~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPGKGWRHIGYVPQRHEFAW-DFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccchHhhCcEEEecccccccC-CCCccHHHHHHh
Confidence 5789999999999999999999999999999 99999999997 357999999987632 124799999876
Q ss_pred CCC--------ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 173 SDD--------ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 173 ~~~--------~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
+.. ......+.+.++++.+++. ....++.+||||||||++|||||+.+|+++ +||||| ++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--------ilDEP~--~~L 144 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVL--------LLDEPF--TGL 144 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccC
Confidence 531 1123345678899999995 346678899999999999999999999999 455555 677
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|..... ...+.+.++ .++|+|||++||+ ++.++||+++ ++ +|+++..|+++++..
T Consensus 145 D~~~~~--~l~~~l~~~-------~~~~~tvii~sH~~~~~~~~~d~i~-~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQE--LLTELFIEL-------AGAGTAILMTTHDLAQAMATCDRVV-LL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEEE-EE-CCEEEeecCHHHhcC
Confidence 755443 334444433 1358999999995 7889999995 58 799999999887754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=274.88 Aligned_cols=158 Identities=16% Similarity=0.279 Sum_probs=129.0
Q ss_pred EEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 72 lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
++++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 l~~~~l~~~~~~~~~~~-----l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~~~~ 70 (171)
T cd03228 1 IEFKNVSFSYPGRPKPV-----LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDLD 70 (171)
T ss_pred CEEEEEEEEcCCCCccc-----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhhhcC
Confidence 47899999996431 24 999999999999999999999999999999999999 999999999962
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
+.++|+||++.++. .|++||+ ||||||||++|||||+.+
T Consensus 71 ~~~~~~~i~~~~~~~~~~~----~t~~e~l--------------------------------LS~G~~~rl~la~al~~~ 114 (171)
T cd03228 71 LESLRKNIAYVPQDPFLFS----GTIRENI--------------------------------LSGGQRQRIAIARALLRD 114 (171)
T ss_pred HHHHHhhEEEEcCCchhcc----chHHHHh--------------------------------hCHHHHHHHHHHHHHhcC
Confidence 46999999987764 5888886 999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
|++| +||||| ++||..... ...+.+.++ .+++|||++||+ ++.. ||++ ++|++|+
T Consensus 115 p~ll--------llDEP~--~gLD~~~~~--~l~~~l~~~--------~~~~tii~~sh~~~~~~~-~d~~-~~l~~g~ 171 (171)
T cd03228 115 PPIL--------ILDEAT--SALDPETEA--LILEALRAL--------AKGKTVIVIAHRLSTIRD-ADRI-IVLDDGR 171 (171)
T ss_pred CCEE--------EEECCC--cCCCHHHHH--HHHHHHHHh--------cCCCEEEEEecCHHHHHh-CCEE-EEEcCCC
Confidence 9999 555555 677754332 233444332 246899999995 5555 9999 5698874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=350.05 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=177.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEE
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
...+..+.+++.+.+|+.++++.+++.... ....++++|++|+|+.. .++ |+|+||+|++|+.++|+
T Consensus 575 ~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v-----L~~inl~i~~Ge~vaIv 649 (1495)
T PLN03232 575 PNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT-----LSDINLEIPVGSLVAIV 649 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce-----eeeeEEEEcCCCEEEEE
Confidence 345567777888999999999865432111 12359999999999642 334 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHH
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME 189 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~ 189 (397)
||||||||||+++|.|+++ |++|.+.. .++.|+||+|++.+++ -|++||+.|+.... +++..++++
T Consensus 650 G~sGSGKSTLl~lLlG~~~-----~~~G~i~~--~~~~Iayv~Q~p~Lf~----gTIreNI~fg~~~~---~e~~~~vl~ 715 (1495)
T PLN03232 650 GGTGEGKTSLISAMLGELS-----HAETSSVV--IRGSVAYVPQVSWIFN----ATVRENILFGSDFE---SERYWRAID 715 (1495)
T ss_pred CCCCCcHHHHHHHHhCCCc-----ccCCCEEE--ecCcEEEEcCcccccc----ccHHHHhhcCCccC---HHHHHHHHH
Confidence 9999999999999999999 99986531 2457999999999997 59999999986421 233444555
Q ss_pred HCCCc-c-----------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHH
Q 015952 190 GVRHG-E-----------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 257 (397)
Q Consensus 190 ~vgl~-~-----------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i 257 (397)
.+++. + ...+...||||||||++||||++++|+|+ +||||| ++||..++. +.+
T Consensus 716 ~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il--------LLDEpt--SaLD~~t~~-----~I~ 780 (1495)
T PLN03232 716 VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY--------IFDDPL--SALDAHVAH-----QVF 780 (1495)
T ss_pred HhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE--------EEcCCc--cccCHHHHH-----HHH
Confidence 55541 1 12346678999999999999999999999 555556 788865544 222
Q ss_pred HHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 258 ATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 258 ~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.+.+ ....+++|+|+|||+ .....||+| ++|++|++++.|+++++..
T Consensus 781 ~~~l----~~~l~~kT~IlvTH~~~~l~~aD~I-i~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 781 DSCM----KDELKGKTRVLVTNQLHFLPLMDRI-ILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHh----hhhhcCCEEEEEECChhhHHhCCEE-EEEeCCEEEEecCHHHHHh
Confidence 2222 111368999999996 677889999 5799999999999988764
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=276.51 Aligned_cols=221 Identities=13% Similarity=0.134 Sum_probs=174.0
Q ss_pred CCeEEEEeEEEEECCCc---eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-
Q 015952 69 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~---~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~- 144 (397)
+++++++|++|+|.... ..+.+.|++-|||++++|+.+|++|.||||||||.|+|+|+++ |++|+|.+||.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n~~~ 76 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILINDHP 76 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEECCcc
Confidence 56899999999984321 0134556899999999999999999999999999999999999 99999999998
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCC--cccccCCCCCChHHH
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRH--GELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGqk 208 (397)
.+.|-++||+|+--. .+.+.+-.-+..+++ ......+++.+-|..||| ++.+.+|..+|-|||
T Consensus 77 L~~~Dy~~R~k~IRMiFQDpnts~-NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 77 LHFGDYSFRSKRIRMIFQDPNTSL-NPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred ccccchHhhhhheeeeecCCcccc-ChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 368999999987521 123444444444443 345566778889999999 667778999999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
||||+||||+.+|+|+++ ||+- .+||.... ..+.+++.. ++.+.|.+.|.|+.+ .+..++
T Consensus 156 QRVaLARALIL~P~iIIa--------DeAl--~~LD~smr------sQl~NL~Le--LQek~GiSyiYV~QhlG~iKHi~ 217 (267)
T COG4167 156 QRVALARALILRPKIIIA--------DEAL--ASLDMSMR------SQLINLMLE--LQEKQGISYIYVTQHIGMIKHIS 217 (267)
T ss_pred HHHHHHHHHhcCCcEEEe--------hhhh--hhccHHHH------HHHHHHHHH--HHHHhCceEEEEechhhHhhhhc
Confidence 999999999999999955 4444 67774333 233333311 234579999999984 889999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~~~ 314 (397)
|.| ++|+.|++++.|++.+++..|.++
T Consensus 218 D~v-iVM~EG~vvE~G~t~~v~a~P~~~ 244 (267)
T COG4167 218 DQV-LVMHEGEVVERGSTADVLASPLHE 244 (267)
T ss_pred ccE-EEEecCceeecCChhhhhcCCccH
Confidence 999 579999999999999999999764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=279.56 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=128.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee------------CcEEEEecCCC--CC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV------------GDGTYFLQEYT--IP 158 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~------------~~ig~v~Q~~~--l~ 158 (397)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.. +.++|+||++. ++
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 999999999999999999999999999999999999 999999999862 35899999973 34
Q ss_pred CCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccc
Q 015952 159 RGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 233 (397)
Q Consensus 159 ~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~si 233 (397)
..|+.||+.++.. ...+..+.+.++++.+++. ...+++.+||||||||++|||||+.+|+++ +
T Consensus 83 ----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--------l 150 (190)
T TIGR01166 83 ----AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVL--------L 150 (190)
T ss_pred ----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--------E
Confidence 3699999987532 2233456678899999994 456778899999999999999999999999 5
Q ss_pred cchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 234 VDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 234 LDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
||||| ++||..... ...+.+.++ .++|+|||++||+
T Consensus 151 lDEPt--~~LD~~~~~--~~~~~l~~~-------~~~~~tili~sH~ 186 (190)
T TIGR01166 151 LDEPT--AGLDPAGRE--QMLAILRRL-------RAEGMTVVISTHD 186 (190)
T ss_pred EcCCc--ccCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeec
Confidence 55555 777754433 233444332 2358999999996
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=290.37 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=135.9
Q ss_pred ceeeeEEEc-----CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~-----~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
+++++|+++ +||+++|+||||||||||+++|+|+++ |++|+|.++|. .|+|++|++..+. ..|+.
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~--~i~~~~q~~~~~~---~~tv~ 79 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELD--TVSYKPQYIKADY---EGTVR 79 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCc--eEEEecccccCCC---CCCHH
Confidence 777777776 799999999999999999999999999 99999999985 7999999986543 57999
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 168 DTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 168 eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
||+.+...........+.++++.+++. ...+++.+|||||||||+|||||+.+|+++ +||||| ++||..
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll--------llDEPt--~~LD~~ 149 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY--------LLDEPS--AYLDVE 149 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHH
Confidence 998754321111123467789999994 456678899999999999999999999999 555556 777755
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
... ...+.+.++. .+.|+|||+|||+ .+..+||++ ++|+++
T Consensus 150 ~~~--~l~~~l~~~~------~~~~~tiiivsHd~~~~~~~~d~i-~~l~~~ 192 (246)
T cd03237 150 QRL--MASKVIRRFA------ENNEKTAFVVEHDIIMIDYLADRL-IVFEGE 192 (246)
T ss_pred HHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEcCC
Confidence 443 3334444331 2358999999995 777899999 457554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=278.40 Aligned_cols=184 Identities=11% Similarity=0.143 Sum_probs=143.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|++++|+. . . +.++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~-~-~-----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~ 68 (195)
T PRK13541 1 MLSLHQLQFNIEQ-K-N-----LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINNIA 68 (195)
T ss_pred CeEEEEeeEEECC-c-E-----EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccChhh
Confidence 5889999999953 3 2 445999999999999999999999999999999999 999999999962
Q ss_pred -CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 146 -GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 146 -~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
+.++|++|++.++. .+|+.||+.+...... ..+.+.++++.+++. ...+++.++|||||||++||||++.+|++
T Consensus 69 ~~~~~~~~~~~~~~~---~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 69 KPYCTYIGHNLGLKL---EMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred hhhEEeccCCcCCCc---cCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 45899999876554 5899999987543111 234567788999994 45667789999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
+ +||||| ++||+.... ...+.+.+. .++|+|||++||+ .....||.+
T Consensus 145 l--------llDEP~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 145 W--------LLDEVE--TNLSKENRD--LLNNLIVMK-------ANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred E--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCccccchhhee
Confidence 9 555555 777755433 222333221 2468999999996 555668876
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=323.58 Aligned_cols=218 Identities=17% Similarity=0.144 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccc----------------------------c---CCCCeEEEEeEEEEECCCceE
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLR----------------------------T---RIGSLTDAKNKILSYTPGAWI 87 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~---~~~~~lel~nvs~~Y~~~~~v 87 (397)
.....+++++...+|+.++++..++.. . ....+++++||+++|+++..+
T Consensus 388 ~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~i 467 (659)
T TIGR00954 388 LAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVL 467 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCee
Confidence 345556666777889999887532210 0 122469999999999644445
Q ss_pred eeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHH
Q 015952 88 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 88 ~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++ ++.++|++|++.+++ .|++
T Consensus 468 -----l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~-~~~i~~v~Q~~~l~~----~tv~ 532 (659)
T TIGR00954 468 -----IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA-KGKLFYVPQRPYMTL----GTLR 532 (659)
T ss_pred -----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC-CCcEEEECCCCCCCC----cCHH
Confidence 999999999999999999999999999999999999 9999999876 567999999998876 3999
Q ss_pred HHHhcCCCC-----hhhHHHHHHHHHHHCCCcccccC----------CCCCChHHHHHHHHHHHHcCCCCeEeecccccc
Q 015952 168 DTRSLSDDA-----SDNINMIKLWIMEGVRHGELVIR----------RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (397)
Q Consensus 168 eni~~~~~~-----~~~~~~~~~~ll~~vgl~~~~~~----------~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~s 232 (397)
||+.++... ....++.+.++++.+++.+...+ +..||||||||++|||||+++|+++
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~il-------- 604 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFA-------- 604 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEE--------
Confidence 999987531 11123456788999998543222 3678999999999999999999999
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
+||||| ++||+.... .+.+.+ .+.|+|+|+|||+ ...++||++ ++|+
T Consensus 605 lLDEpt--s~LD~~~~~------~l~~~l------~~~~~tvI~isH~~~~~~~~d~i-l~l~ 652 (659)
T TIGR00954 605 ILDECT--SAVSVDVEG------YMYRLC------REFGITLFSVSHRKSLWKYHEYL-LYMD 652 (659)
T ss_pred EEeCCc--cCCCHHHHH------HHHHHH------HHcCCEEEEEeCchHHHHhCCEE-EEEe
Confidence 666666 788855433 333332 1248999999996 667899999 4575
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=270.05 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=119.0
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
++++|++++|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 1 l~~~~l~~~~~~-~~v-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~---- 65 (163)
T cd03216 1 LELRGITKRFGG-VKA-----LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVS---- 65 (163)
T ss_pred CEEEEEEEEECC-eEE-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC----
Confidence 478999999963 335 999999999999999999999999999999999999 99999999985210
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccc
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~ 231 (397)
. .+..+. .-..++. ..+|||||+||++|||||+.+|+++++|||
T Consensus 66 -------~----~~~~~~-----------------~~~~i~~------~~qLS~G~~qrl~laral~~~p~illlDEP-- 109 (163)
T cd03216 66 -------F----ASPRDA-----------------RRAGIAM------VYQLSVGERQMVEIARALARNARLLILDEP-- 109 (163)
T ss_pred -------c----CCHHHH-----------------HhcCeEE------EEecCHHHHHHHHHHHHHhcCCCEEEEECC--
Confidence 0 000000 0000110 111999999999999999999999955555
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEee
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~ 300 (397)
| ++||..... ...+.+.++ .++|.|||++||+ ++..+|||+ ++|++|++++
T Consensus 110 ------~--~~LD~~~~~--~l~~~l~~~-------~~~~~tiii~sh~~~~~~~~~d~~-~~l~~g~i~~ 162 (163)
T cd03216 110 ------T--AALTPAEVE--RLFKVIRRL-------RAQGVAVIFISHRLDEVFEIADRV-TVLRDGRVVG 162 (163)
T ss_pred ------C--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 5 666644333 233444332 1358999999995 678899999 5699999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=348.25 Aligned_cols=231 Identities=16% Similarity=0.130 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccc------CCCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEEC
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLRT------RIGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
..+..+.+++.+++|+.++++.++.... .....++++|++|+|+.. .++ |+|+||+|++|+.++|+|
T Consensus 576 ~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v-----L~~inl~i~~Ge~vaIvG 650 (1622)
T PLN03130 576 NLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT-----LSNINLDVPVGSLVAIVG 650 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce-----eeceeEEecCCCEEEEEC
Confidence 4466677788889999999976543211 112369999999999642 334 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcc-cEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME 189 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~-G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~ 189 (397)
|||||||||+++|.|.++ |++ |+|.+.| .|+||+|++.+++ -|++||+.|+.... +++..++++
T Consensus 651 ~sGSGKSTLl~lLlG~~~-----~~~GG~I~l~~---~Iayv~Q~p~Lfn----gTIreNI~fg~~~d---~e~y~~vl~ 715 (1622)
T PLN03130 651 STGEGKTSLISAMLGELP-----PRSDASVVIRG---TVAYVPQVSWIFN----ATVRDNILFGSPFD---PERYERAID 715 (1622)
T ss_pred CCCCCHHHHHHHHHHhhc-----cCCCceEEEcC---eEEEEcCccccCC----CCHHHHHhCCCccc---HHHHHHHHH
Confidence 999999999999999999 999 9999865 6999999999997 69999999986521 234445555
Q ss_pred HCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHH
Q 015952 190 GVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 257 (397)
Q Consensus 190 ~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i 257 (397)
.+++. ....+...|||||||||+||||++.+|+|+ +||||| |+||..... +.+
T Consensus 716 a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il--------LLDEpt--SALD~~~~~-----~I~ 780 (1622)
T PLN03130 716 VTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY--------IFDDPL--SALDAHVGR-----QVF 780 (1622)
T ss_pred HhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE--------EECCCc--cccCHHHHH-----HHH
Confidence 55541 112346678999999999999999999999 555556 788865443 222
Q ss_pred HHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 258 ATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 258 ~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.+.+ ....+|+|+|+|||+ .....||+| ++|++|++++.|+++++..
T Consensus 781 ~~~l----~~~l~~kTvIlVTH~l~~l~~aD~I-i~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 781 DKCI----KDELRGKTRVLVTNQLHFLSQVDRI-ILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHh----hHHhcCCEEEEEECCHhHHHhCCEE-EEEeCCEEEEeCCHHHHHh
Confidence 2222 111368999999996 777889999 5799999999999988764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=326.51 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=162.2
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc--ccEEEECcee------
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSV------ 145 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~--~G~I~i~G~~------ 145 (397)
.+|++++|++ +.+ |+|+|+++++||++||+||||||||||+|+|+|+.+ |+ +|+|.+||+.
T Consensus 71 ~~~l~~~~~~-~~i-----L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~~~~~ 139 (659)
T PLN03211 71 ISDETRQIQE-RTI-----LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPTKQIL 139 (659)
T ss_pred cccccccCCC-Cee-----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECchhhc
Confidence 5677788853 335 999999999999999999999999999999999998 74 8999999973
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCccc------ccCCCCCChHHHHHHH
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGEL------VIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~~------~~~~~~lSGGqkQRva 212 (397)
+++|||+|++.+++ .+||+||+.+... ..++.+++++++++.+||.+. .....++|||||||++
T Consensus 140 ~~i~yv~Q~~~l~~---~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ 216 (659)
T PLN03211 140 KRTGFVTQDDILYP---HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216 (659)
T ss_pred cceEEECcccccCC---cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHH
Confidence 56999999988876 6899999987532 223445678899999999543 2345679999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRA 289 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI 289 (397)
|||||+.+|++| +||||| ++||..... ...+.+.++ .++|+|||++||+ .+.++||++
T Consensus 217 ia~aL~~~P~iL--------lLDEPt--sgLD~~~~~--~l~~~L~~l-------~~~g~TvI~~sH~~~~~i~~~~D~i 277 (659)
T PLN03211 217 IAHEMLINPSLL--------ILDEPT--SGLDATAAY--RLVLTLGSL-------AQKGKTIVTSMHQPSSRVYQMFDSV 277 (659)
T ss_pred HHHHHHhCCCEE--------EEeCCC--CCcCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCCCHHHHHhhceE
Confidence 999999999999 555556 777755444 344444443 1368999999994 578999999
Q ss_pred EEEeeCCEEeeeCCccccc
Q 015952 290 RIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~ 308 (397)
++|++|+++..|+++++.
T Consensus 278 -ilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 278 -LVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred -EEecCCcEEEECCHHHHH
Confidence 569999999999988764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=343.78 Aligned_cols=239 Identities=15% Similarity=0.172 Sum_probs=177.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcccccccc----C-----CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRT----R-----IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~ 105 (397)
.....+..+.+++.+++|++++++.+++... . ....++++|++++|+.+ .++ |+|+||+|++|++
T Consensus 592 ~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~isl~i~~G~~ 666 (1522)
T TIGR00957 592 ILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPT-----LNGITFSIPEGAL 666 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCce-----eeeeEEEEcCCCE
Confidence 3444566777788889999999976543211 0 11269999999999643 335 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHH
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL 185 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~ 185 (397)
++|+||||||||||+++|+|+++ |++|+|.++| .|+|++|++.+++ .|++||+.++....++..+.+.
T Consensus 667 v~IvG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---~i~yv~Q~~~l~~----~Ti~eNI~~g~~~~~~~~~~~~ 734 (1522)
T TIGR00957 667 VAVVGQVGCGKSSLLSALLAEMD-----KVEGHVHMKG---SVAYVPQQAWIQN----DSLRENILFGKALNEKYYQQVL 734 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhCCCc-----cCCcEEEECC---EEEEEcCCccccC----CcHHHHhhcCCccCHHHHHHHH
Confidence 99999999999999999999999 9999999998 5999999998875 6999999998642211111111
Q ss_pred H---HHHHCCC---c---ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 186 W---IMEGVRH---G---ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 186 ~---ll~~vgl---~---~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
+ +.+.++. + ....++.+||||||||++||||++.+|+++ +||||| ++||..... ...+.
T Consensus 735 ~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il--------lLDEp~--saLD~~~~~--~i~~~ 802 (1522)
T TIGR00957 735 EACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY--------LFDDPL--SAVDAHVGK--HIFEH 802 (1522)
T ss_pred HHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEcCCc--cccCHHHHH--HHHHH
Confidence 1 1222222 1 124567889999999999999999999999 555555 777755444 22233
Q ss_pred HHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
+.+. ....+|+|+|+|||+ .....||+| ++|++|++++.|+++++..
T Consensus 803 l~~~-----~~~~~~~tvIlvTH~~~~l~~~D~i-i~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 803 VIGP-----EGVLKNKTRILVTHGISYLPQVDVI-IVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred Hhhh-----hhhhcCCEEEEEeCChhhhhhCCEE-EEecCCeEEeeCCHHHHHh
Confidence 3211 011357999999996 555669999 5799999999999888753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=273.63 Aligned_cols=194 Identities=13% Similarity=0.180 Sum_probs=156.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
.++++++.+.-+ +.++ |+++||++.+||+++|+||||||||||+|+++.|++ |++|.+.+.|+
T Consensus 3 lle~kq~~y~a~-~a~i-----l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs~~~ 71 (223)
T COG4619 3 LLELKQVGYLAG-DAKI-----LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVSTLK 71 (223)
T ss_pred chHHHHHHhhcC-CCee-----ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCccccccC
Confidence 355666543332 3335 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArA 216 (397)
+.+|+|+.|.|.||. -||+||+.|+.. ...-.+..+..+++++++++ +.+...+||||+|||+||+|-
T Consensus 72 pea~Rq~VsY~~Q~paLfg----~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~ 147 (223)
T COG4619 72 PEAYRQQVSYCAQTPALFG----DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRN 147 (223)
T ss_pred hHHHHHHHHHHHcCccccc----cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHH
Confidence 578999999999997 699999999865 22234556778999999943 467788899999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|..-|+|| +||||| ++||..+.. ..-+++...+ ..++.+++.|||| .+.++|||+ +.+.
T Consensus 148 Lq~~P~IL--------LLDE~T--sALD~~nkr--~ie~mi~~~v------~~q~vAv~WiTHd~dqa~rha~k~-itl~ 208 (223)
T COG4619 148 LQFMPKIL--------LLDEIT--SALDESNKR--NIEEMIHRYV------REQNVAVLWITHDKDQAIRHADKV-ITLQ 208 (223)
T ss_pred hhcCCceE--------EecCch--hhcChhhHH--HHHHHHHHHh------hhhceEEEEEecChHHHhhhhheE-EEec
Confidence 99999999 666666 777755544 2233343332 3578999999994 889999999 6788
Q ss_pred CCEE
Q 015952 295 LGEL 298 (397)
Q Consensus 295 ~G~i 298 (397)
.|++
T Consensus 209 ~G~~ 212 (223)
T COG4619 209 PGHA 212 (223)
T ss_pred cCcc
Confidence 8876
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=296.30 Aligned_cols=235 Identities=11% Similarity=0.174 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECC
Q 015952 41 WDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 111 (397)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGp 111 (397)
...+.+.....+++.+++..+.+.... ....+.+.||+|.|.+..++ |+++||++++|+.+|+|||
T Consensus 223 Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~i-----L~~isf~i~~g~tvAiVg~ 297 (497)
T COG5265 223 YREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-----LNGISFTIPLGKTVAIVGE 297 (497)
T ss_pred HHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchh-----hcCccccccCccEEEEEeC
Confidence 344555566677777777766554332 12347899999999776655 9999999999999999999
Q ss_pred CCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--Chhh
Q 015952 112 KGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDN 179 (397)
Q Consensus 112 nGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~ 179 (397)
||+||||+++++.+++. +++|.|.++|+ ++-||+|||+..||+ -|++.|+.++.. ..++
T Consensus 298 SG~gKsTI~rllfRFyD-----~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN----Dti~yni~ygr~~at~ee 368 (497)
T COG5265 298 SGAGKSTILRLLFRFYD-----VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN----DTIAYNIKYGRPDATAEE 368 (497)
T ss_pred CCCcHHHHHHHHHHHhC-----CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh----hhHHHHHhccCccccHHH
Confidence 99999999999999999 99999999998 578999999999997 599999999876 2222
Q ss_pred H---------HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 180 I---------NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 180 ~---------~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
. ...++.+.+.+... -..+...+||||||||||||+++++|+|| ++||.| |+||..++.
T Consensus 369 v~aaa~~aqi~~fi~~lP~gy~t~-VgerglklSggekqrvaiar~ilk~p~il--------~~deat--saldt~te~- 436 (497)
T COG5265 369 VGAAAEAAQIHDFIQSLPEGYDTG-VGERGLKLSGGEKQRVAIARTILKNPPIL--------ILDEAT--SALDTHTEQ- 436 (497)
T ss_pred HHHHHHHhhhhHHHHhCchhhhcc-cchheeeccCchHHHHHHHHHHhcCCCEE--------EEehhh--hHhhhhHHH-
Confidence 2 22233334444331 12346678999999999999999999999 888888 899977655
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
+....+.+ ...|+|.++|.|+ ...--||.| ++|++|+|++.|++++++...
T Consensus 437 -~iq~~l~~--------~~~~rttlviahrlsti~~adei-ivl~~g~i~erg~h~~ll~~~ 488 (497)
T COG5265 437 -AIQAALRE--------VSAGRTTLVIAHRLSTIIDADEI-IVLDNGRIVERGTHEELLAAG 488 (497)
T ss_pred -HHHHHHHH--------HhCCCeEEEEeehhhhccCCceE-EEeeCCEEEecCcHHHHHHcC
Confidence 22222222 2479999999997 777789999 679999999999999998763
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=273.15 Aligned_cols=209 Identities=14% Similarity=0.161 Sum_probs=172.1
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
..++++||+++|+ +- .+ |+++||+|.+||.-+|||||||||||+|.+|+|-.+ |+.|+|.++|.
T Consensus 4 ~iL~~~~vsVsF~-GF--~A---ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~~ 72 (249)
T COG4674 4 IILYLDGVSVSFG-GF--KA---LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLTK 72 (249)
T ss_pred ceEEEeceEEEEc-ce--ee---eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhcc
Confidence 5789999999995 32 33 999999999999999999999999999999999999 99999999993
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC------------ChhhHHHHHHHHHHHCCCcccccC-CCCCC
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD------------ASDNINMIKLWIMEGVRHGELVIR-RSDSS 204 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~------------~~~~~~~~~~~ll~~vgl~~~~~~-~~~lS 204 (397)
+..||--||-|.+|. .+||+||+.+... ...+.+.+++++|+..||++.... ...||
T Consensus 73 ~~e~~IAr~GIGRKFQ~PtVfe---~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LS 149 (249)
T COG4674 73 LPEHRIARAGIGRKFQKPTVFE---NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLS 149 (249)
T ss_pred CCHHHHHHhccCccccCCeehh---hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhc
Confidence 467899999999998 7999999988654 133445689999999999665444 55679
Q ss_pred hHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH
Q 015952 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL 282 (397)
Q Consensus 205 GGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~ 282 (397)
.||||++.|++-++.+|++|++|||+...=|+-|. +..+.+.+ .+.+.+|++|.|| ++
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~------------~taeLl~~--------la~~hsilVVEHDM~Fv 209 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETE------------KTAELLKS--------LAGKHSILVVEHDMGFV 209 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHH------------HHHHHHHH--------HhcCceEEEEeccHHHH
Confidence 99999999999999999999776663333333331 12233322 3567899999996 99
Q ss_pred HccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 283 ~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
..+|++|. +|+.|.+...|+.+++-++|..
T Consensus 210 r~~A~~VT-Vlh~G~VL~EGsld~v~~dp~V 239 (249)
T COG4674 210 REIADKVT-VLHEGSVLAEGSLDEVQNDPKV 239 (249)
T ss_pred HHhhheeE-EEeccceeecccHHHhhcCcce
Confidence 99999996 5999999999999999877753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=314.37 Aligned_cols=195 Identities=11% Similarity=0.107 Sum_probs=154.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
..+|+++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ |....|
T Consensus 317 ~~~l~~~~l~~~~~~-~~i-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~~i 384 (635)
T PRK11147 317 KIVFEMENVNYQIDG-KQL-----VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKLEV 384 (635)
T ss_pred CceEEEeeeEEEECC-eEE-----EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCcEE
Confidence 458999999999963 335 999999999999999999999999999999999999 99999999 545579
Q ss_pred EEEecCC-CCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 149 TYFLQEY-TIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 149 g~v~Q~~-~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
||++|++ .+++ .+||.+|+.++... .......+.++++.+++. . ..+++..|||||||||+|||||+.+|++
T Consensus 385 ~y~~q~~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 385 AYFDQHRAELDP---EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred EEEeCcccccCC---CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999986 3554 68999999875421 112234577889999983 3 4667889999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee-CCEEee
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY-LGELLG 300 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~-~G~iv~ 300 (397)
| +||||| ++||.... +.+.+++ . ..+.|||+|||| ++..+||++ ++++ +|++..
T Consensus 462 L--------lLDEPt--~~LD~~~~------~~l~~~l----~--~~~~tvi~vSHd~~~~~~~~d~i-~~l~~~g~i~~ 518 (635)
T PRK11147 462 L--------ILDEPT--NDLDVETL------ELLEELL----D--SYQGTVLLVSHDRQFVDNTVTEC-WIFEGNGKIGR 518 (635)
T ss_pred E--------EEcCCC--CCCCHHHH------HHHHHHH----H--hCCCeEEEEECCHHHHHHhcCEE-EEEeCCCeEEE
Confidence 9 555556 67774432 3444432 1 114599999995 788999999 5697 899876
Q ss_pred e
Q 015952 301 I 301 (397)
Q Consensus 301 ~ 301 (397)
.
T Consensus 519 ~ 519 (635)
T PRK11147 519 Y 519 (635)
T ss_pred c
Confidence 4
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=313.15 Aligned_cols=199 Identities=15% Similarity=0.146 Sum_probs=156.0
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++|+++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. .++
T Consensus 310 ~~~l~~~~l~~~y~~-~~i-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~~i 377 (638)
T PRK10636 310 NPLLKMEKVSAGYGD-RII-----LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-IKL 377 (638)
T ss_pred CceEEEEeeEEEeCC-eee-----eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-EEE
Confidence 458999999999963 335 999999999999999999999999999999999999 99999999752 469
Q ss_pred EEEecCCC--CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc--ccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 149 TYFLQEYT--IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 149 g~v~Q~~~--l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
||++|+.. +.. ..++.+++.... .......+.++++.+++. ...+++..|||||||||+|||||+.+|++|
T Consensus 378 gy~~Q~~~~~l~~---~~~~~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 378 GYFAQHQLEFLRA---DESPLQHLARLA--PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred EEecCcchhhCCc---cchHHHHHHHhC--chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999742 222 467888764211 122345678899999993 346678999999999999999999999999
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-ee
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GI 301 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~ 301 (397)
+||||| ++||..... .+.+++ ... .| |||+|||| ++..+|||| ++|++|+++ ..
T Consensus 453 --------lLDEPt--~~LD~~~~~------~l~~~L----~~~-~g-tvi~vSHd~~~~~~~~d~i-~~l~~G~i~~~~ 509 (638)
T PRK10636 453 --------LLDEPT--NHLDLDMRQ------ALTEAL----IDF-EG-ALVVVSHDRHLLRSTTDDL-YLVHDGKVEPFD 509 (638)
T ss_pred --------EEcCCC--CCCCHHHHH------HHHHHH----HHc-CC-eEEEEeCCHHHHHHhCCEE-EEEECCEEEEcC
Confidence 555556 677754333 333332 111 34 99999995 788999999 579999997 67
Q ss_pred CCcccc
Q 015952 302 PPAKQI 307 (397)
Q Consensus 302 g~~~el 307 (397)
|+.++.
T Consensus 510 g~~~~~ 515 (638)
T PRK10636 510 GDLEDY 515 (638)
T ss_pred CCHHHH
Confidence 877665
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=274.89 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=134.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE-ECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~-i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|. ++|.... +.|.+.+++ .+|+.||+.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~---~~~~~~l~~---~ltv~enl~ 71 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP---LGANSFILP---GLTGEENAR 71 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec---cccccccCC---cCcHHHHHH
Confidence 899999999999999999999999999999999999 9999997 7775322 334455555 689999998
Q ss_pred cCCC-ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchh
Q 015952 172 LSDD-ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (397)
Q Consensus 172 ~~~~-~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~ 249 (397)
+... .....++....+.+.+++.. .+.++..+|||||||++|||||+.+|+++++||| | +++|+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP--------~--~~lD~~~~~ 141 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGK--------L--YTGDNATQL 141 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCC--------C--ccCCHHHHH
Confidence 7533 11111222233445567733 4556788999999999999999999999955555 4 455543332
Q ss_pred hhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 250 EKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 250 ~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
...+.+.+. .+++|+|++||+ .+..+||++ ++|++|+++..++.++.
T Consensus 142 --~~~~~l~~~--------~~~~~ii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 142 --RMQAALACQ--------LQQKGLIVLTHNPRLIKEHCHAF-GVLLHGKITMCEDLAQA 190 (213)
T ss_pred --HHHHHHHHH--------hhCCcEEEEECCHHHHHHhcCee-EEEECCeEEEeCCHHHH
Confidence 222323221 134689999995 777899999 56999999998877654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=308.28 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=150.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
|.||+++||+++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| ...+
T Consensus 1 m~~l~i~~ls~~~~~-~~i-----l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~-~~~~ 68 (635)
T PRK11147 1 MSLISIHGAWLSFSD-APL-----LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQ-DLIV 68 (635)
T ss_pred CcEEEEeeEEEEeCC-cee-----EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCC-CCEE
Confidence 458999999999964 335 999999999999999999999999999999999999 9999999987 3457
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCC------------------------------C--------ChhhHHHHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSD------------------------------D--------ASDNINMIKLWIMEG 190 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~------------------------------~--------~~~~~~~~~~~ll~~ 190 (397)
++++|.+.... ..++.+++..+. . .......++.++++.
T Consensus 69 ~~l~q~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 69 ARLQQDPPRNV---EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred EEeccCCCCCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 89988753221 134444321100 0 001234567889999
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC
Q 015952 191 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD 270 (397)
Q Consensus 191 vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~ 270 (397)
+|+.. .+++.+|||||||||+|||||+.+|++| +||||| ++||.... +.+.+++ . .-
T Consensus 146 lgl~~-~~~~~~LSgGekqRv~LAraL~~~P~lL--------LLDEPt--~~LD~~~~------~~L~~~L----~--~~ 202 (635)
T PRK11147 146 LGLDP-DAALSSLSGGWLRKAALGRALVSNPDVL--------LLDEPT--NHLDIETI------EWLEGFL----K--TF 202 (635)
T ss_pred CCCCC-CCchhhcCHHHHHHHHHHHHHhcCCCEE--------EEcCCC--CccCHHHH------HHHHHHH----H--hC
Confidence 99953 5668899999999999999999999999 555556 67774432 3444443 1 11
Q ss_pred CceEEEEech--hHHccccEEEEEeeCCEEee-eCCccccc
Q 015952 271 DKPVVVVTHG--DLLSLTDRARIRTYLGELLG-IPPAKQIF 308 (397)
Q Consensus 271 g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~-~g~~~el~ 308 (397)
+.|||+|||| ++..+||+| ++|++|+++. .|+..+.+
T Consensus 203 ~~tvlivsHd~~~l~~~~d~i-~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 203 QGSIIFISHDRSFIRNMATRI-VDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred CCEEEEEeCCHHHHHHhcCeE-EEEECCEEEEecCCHHHHH
Confidence 3599999995 788999999 5799999985 47665554
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=280.36 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=147.5
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE-----------ECc
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 143 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~-----------i~G 143 (397)
.||+|+|+.+..+ |+|+|+ +++|++++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 4 ~~~~~~y~~~~~~-----l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNSFK-----LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcchh-----hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 4789999644324 999994 99999999999999999999999999999 9999996 677
Q ss_pred ee------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHH
Q 015952 144 SV------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRM 210 (397)
Q Consensus 144 ~~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQR 210 (397)
.. ..++|++|...+++ .++.+++..... ....+..+.++++.+++.. ....+.++|||||||
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~i~~~l~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 73 SELQNYFTKLLEGDVKVIVKPQYVDLIP----KAVKGKVGELLK-KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147 (255)
T ss_pred chhhhhhHHhhhcccceeeecchhccCc----hHHHHHHHHHhc-hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 51 13689999876654 366666655432 2233456788999999944 566788999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
++|||||+.+|+++ +||||| ++||..... ...+.+.++ .++++|||++||+ .+..+||+
T Consensus 148 v~laral~~~p~il--------llDEPt--s~LD~~~~~--~l~~~l~~l-------~~~~~tIIiiSHd~~~~~~~ad~ 208 (255)
T cd03236 148 VAIAAALARDADFY--------FFDEPS--SYLDIKQRL--NAARLIREL-------AEDDNYVLVVEHDLAVLDYLSDY 208 (255)
T ss_pred HHHHHHHHhCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEECCHHHHHHhCCE
Confidence 99999999999999 555555 677754433 233444433 1358999999995 77779999
Q ss_pred EEEEeeCCEEeeeCCcccccCCCCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
| ++| +|++.++| ++..|.+
T Consensus 209 i-~~l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 209 I-HCL-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred E-EEE-CCCCCcce----eeecCcc
Confidence 9 456 56665543 4555553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=307.74 Aligned_cols=198 Identities=13% Similarity=0.116 Sum_probs=149.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~ 150 (397)
||+++||+++|++ ..+ |+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..+||
T Consensus 1 ~i~i~nls~~~g~-~~~-----l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~-~~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGV-RVL-----LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGN-WQLAW 68 (638)
T ss_pred CEEEEEEEEEeCC-cee-----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-CEEEE
Confidence 5899999999963 335 999999999999999999999999999999999999 99999999884 35899
Q ss_pred EecCCCCCCCCCCccHHHHHhcCC-------------------------C------ChhhHHHHHHHHHHHCCCc--ccc
Q 015952 151 FLQEYTIPRGSNSFSLYDTRSLSD-------------------------D------ASDNINMIKLWIMEGVRHG--ELV 197 (397)
Q Consensus 151 v~Q~~~l~~~~~~ltv~eni~~~~-------------------------~------~~~~~~~~~~~ll~~vgl~--~~~ 197 (397)
++|+...+. .++.+.+.-.. . ...+...++.++++.+|+. ...
T Consensus 69 ~~q~~~~~~----~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 69 VNQETPALP----QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred EecCCCCCC----CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 999643222 23333221100 0 0112345678899999994 346
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEE
Q 015952 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 277 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIiv 277 (397)
.++.+|||||||||+|||||+.+|++| +||||| ++||.... ..+.+.+ . +.+.|||+|
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lL--------LLDEPt--n~LD~~~~------~~L~~~L----~--~~~~tviiv 202 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLL--------LLDEPT--NHLDLDAV------IWLEKWL----K--SYQGTLILI 202 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEE--------EEcCCC--CcCCHHHH------HHHHHHH----H--hCCCeEEEE
Confidence 678899999999999999999999999 555556 77774432 3344433 1 225699999
Q ss_pred ech--hHHccccEEEEEeeCCEEee-eCCcccc
Q 015952 278 THG--DLLSLTDRARIRTYLGELLG-IPPAKQI 307 (397)
Q Consensus 278 TH~--~~~~~aDrI~v~l~~G~iv~-~g~~~el 307 (397)
||| ++..+||+| ++|++|+++. .|+....
T Consensus 203 sHd~~~l~~~~d~i-~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 203 SHDRDFLDPIVDKI-IHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred eCCHHHHHHhcCEE-EEEeCCEEEEecCCHHHH
Confidence 995 888999999 5799999974 4555443
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=272.46 Aligned_cols=205 Identities=16% Similarity=0.119 Sum_probs=162.2
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.+++|+++||+++|+ ++++ |++||++|++||-.+|+||||||||||+++++|.++ |++|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~-gk~i-----L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G 96 (257)
T COG1119 28 NEPLIELKNVSVRRN-GKKI-----LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFG 96 (257)
T ss_pred CcceEEecceEEEEC-CEee-----ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeecc
Confidence 356899999999996 4446 999999999999999999999999999999999999 99999999998
Q ss_pred --------eCcEEEEecCCCC-CCCCCCccHHHHHhcCCC---------ChhhHHHHHHHHHHHCCCccc-ccCCCCCCh
Q 015952 145 --------VGDGTYFLQEYTI-PRGSNSFSLYDTRSLSDD---------ASDNINMIKLWIMEGVRHGEL-VIRRSDSSS 205 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l-~~~~~~ltv~eni~~~~~---------~~~~~~~~~~~ll~~vgl~~~-~~~~~~lSG 205 (397)
+++||+|.-+-.. +. ...+++|-+.-+.. ..++...++.++++.+|+.+. .++..+||-
T Consensus 97 ~~~~~~elrk~IG~vS~~L~~~~~--~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~ 174 (257)
T COG1119 97 KGETIFELRKRIGLVSSELHERFR--VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQ 174 (257)
T ss_pred CCcchHHHHHHhCccCHHHHhhcc--cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCH
Confidence 4689998533111 11 13466666654322 345566788999999999665 455677899
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~ 283 (397)
||||||.|||||+.+|++| +||||+ ++||....+ ..++.+.++. ....+.++|+||| +++.
T Consensus 175 Ge~rrvLiaRALv~~P~LL--------iLDEP~--~GLDl~~re--~ll~~l~~~~-----~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 175 GEQRRVLIARALVKDPELL--------ILDEPA--QGLDLIARE--QLLNRLEELA-----ASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred hHHHHHHHHHHHhcCCCEE--------EecCcc--ccCChHHHH--HHHHHHHHHh-----cCCCCceEEEEEcchhhcc
Confidence 9999999999999999999 566666 888866654 3455555542 2346889999999 5888
Q ss_pred ccccEEEEEeeCCEEeeeCC
Q 015952 284 SLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~ 303 (397)
...+++ +.+++|+++..|.
T Consensus 238 ~~~th~-lll~~g~v~~~g~ 256 (257)
T COG1119 238 PCFTHR-LLLKEGEVVAQGK 256 (257)
T ss_pred cccceE-EEeeCCceeeccc
Confidence 888999 5799999998774
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=310.68 Aligned_cols=198 Identities=13% Similarity=0.098 Sum_probs=150.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++||+++|+++..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. .+|
T Consensus 506 ~~~L~~~~ls~~y~~~~~i-----l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~-~~i 574 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLL-----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAK-VRM 574 (718)
T ss_pred CceEEEEeeEEEeCCCCee-----EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCc-eeE
Confidence 3689999999999644435 999999999999999999999999999999999999 99999999874 569
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcC--CCChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLS--DDASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~--~~~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
||++|++.. .+++.+|..+. ........+.+.++++.+++. . ...++.+|||||||||+|||||+.+|++|
T Consensus 575 gyv~Q~~~~-----~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 575 AVFSQHHVD-----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred EEEeccccc-----cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 999998621 23444442211 100111235677899999994 3 46678999999999999999999999999
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-ee
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GI 301 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~ 301 (397)
+||||| ++||..... .+.+.+ .. ..| |||+|||| .+..+|||+ ++|++|+++ ..
T Consensus 650 --------LLDEPT--~~LD~~s~~------~l~~~L----~~-~~g-tvIivSHd~~~i~~~~drv-~~l~~G~i~~~~ 706 (718)
T PLN03073 650 --------LLDEPS--NHLDLDAVE------ALIQGL----VL-FQG-GVLMVSHDEHLISGSVDEL-WVVSEGKVTPFH 706 (718)
T ss_pred --------EEcCCC--CCCCHHHHH------HHHHHH----HH-cCC-EEEEEECCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 555556 777754332 222222 11 134 99999995 888899999 579999998 55
Q ss_pred CCcc
Q 015952 302 PPAK 305 (397)
Q Consensus 302 g~~~ 305 (397)
|+++
T Consensus 707 g~~~ 710 (718)
T PLN03073 707 GTFH 710 (718)
T ss_pred CCHH
Confidence 6543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=328.25 Aligned_cols=238 Identities=12% Similarity=0.027 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccccC---CCCeEEEEeEEEEECCCc----------------e-----E-------
Q 015952 39 DSWDSLVDQRRRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGA----------------W-----I------- 87 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lel~nvs~~Y~~~~----------------~-----v------- 87 (397)
..+..+.++..+++|+++++..++..... ....++++|+++.|.... . +
T Consensus 357 ~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 436 (1490)
T TIGR01271 357 GAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSL 436 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCcccccccccccccccccccccccccccccccc
Confidence 34555666778899999999865432211 123589999999994210 0 0
Q ss_pred eeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHH
Q 015952 88 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 88 ~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
..-.+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .|+|++|++.+++ .|++
T Consensus 437 ~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g---~iayv~Q~~~l~~----~Ti~ 504 (1490)
T TIGR01271 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSG---RISFSPQTSWIMP----GTIK 504 (1490)
T ss_pred ccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECC---EEEEEeCCCccCC----ccHH
Confidence 00123999999999999999999999999999999999999 9999999998 5999999999886 5999
Q ss_pred HHHhcCCCChh-hHHHH-----HHHHHHHCCCcc---cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhh
Q 015952 168 DTRSLSDDASD-NINMI-----KLWIMEGVRHGE---LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 238 (397)
Q Consensus 168 eni~~~~~~~~-~~~~~-----~~~ll~~vgl~~---~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT 238 (397)
||+.|+..... ..++. ..+.++.+..++ ...++..|||||||||+||||++.+|+++|||| ||
T Consensus 505 eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe--------p~ 576 (1490)
T TIGR01271 505 DNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS--------PF 576 (1490)
T ss_pred HHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC--------Cc
Confidence 99999754211 11111 112233333221 234578899999999999999999999995555 45
Q ss_pred hhccccccchhhhHHHHH-HHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 239 VLKSMEGDSDVEKQYNQI-VATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 239 ~~s~LD~~~~~~~~~~~~-i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
++||..... ...+. +..+ .+|+|+|+|||+ .....||+| ++|++|+++..|+++++..
T Consensus 577 --saLD~~~~~--~i~~~~l~~~--------~~~~tvilvtH~~~~~~~ad~i-i~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 577 --THLDVVTEK--EIFESCLCKL--------MSNKTRILVTSKLEHLKKADKI-LLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred --ccCCHHHHH--HHHHHHHHHH--------hcCCeEEEEeCChHHHHhCCEE-EEEECCEEEEEcCHHHHHh
Confidence 777755544 22222 2221 358999999996 445569999 5799999999999888764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=251.92 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=117.5
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
++++|++++|++ ..+ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|. ..++|+
T Consensus 1 l~~~~l~~~~~~-~~~-----l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~-~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLL-----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGST-VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceE-----EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCe-EEEEEE
Confidence 478999999964 334 999999999999999999999999999999999999 99999999995 578998
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccc
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~ 231 (397)
+| +|+||+||++|||||+.+|+++++|||
T Consensus 69 ~~-------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP-- 97 (144)
T cd03221 69 EQ-------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP-- 97 (144)
T ss_pred cc-------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC--
Confidence 88 999999999999999999999955555
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+ ++||..... .+.+.+ . +-++|+|++||+ ++..+||++ ++|++|+
T Consensus 98 ------~--~~LD~~~~~------~l~~~l----~--~~~~til~~th~~~~~~~~~d~v-~~l~~g~ 144 (144)
T cd03221 98 ------T--NHLDLESIE------ALEEAL----K--EYPGTVILVSHDRYFLDQVATKI-IELEDGK 144 (144)
T ss_pred ------c--cCCCHHHHH------HHHHHH----H--HcCCEEEEEECCHHHHHHhCCEE-EEEeCCC
Confidence 5 677744332 333332 1 114699999994 777899999 5699885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=252.54 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=154.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
++.++||+...++ .-. |-++||+|.+||++.|+||||||||||+.-+.|.+.+.+ ..+|++.++++
T Consensus 2 ~l~l~nvsl~l~g-~cL-----La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRLPG-SCL-----LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecCCC-ceE-----EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeeccccc
Confidence 6789999988753 335 899999999999999999999999999999999999665 56899999998
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
++++|++||++.+|+ +++|++|+.|... ..+..+..+..+|++.|| +..+..|.++|||||-||++-|+|+
T Consensus 74 a~qRq~GiLFQD~lLFp---hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll 150 (213)
T COG4136 74 AAQRQIGILFQDALLFP---HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALL 150 (213)
T ss_pred hhhhheeeeeccccccc---ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHH
Confidence 478999999999998 8999999999876 344566778899999999 5667889999999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
..|+.+++||| ||.||..++. +..+.+-+.. ..-|..+|+|||| ++. ...||
T Consensus 151 a~Pk~lLLDEP----------FS~LD~ALR~--qfR~wVFs~~------r~agiPtv~VTHD~~Dvp-agsrV 204 (213)
T COG4136 151 AQPKALLLDEP----------FSRLDVALRD--QFRQWVFSEV------RAAGIPTVQVTHDLQDVP-AGSRV 204 (213)
T ss_pred hCcceeeeCCc----------hhHHHHHHHH--HHHHHHHHHH------HhcCCCeEEEecccccCC-CCCee
Confidence 99999977777 4767654443 3444443321 2468999999997 433 34555
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=327.55 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=163.3
Q ss_pred CeEEEEeEEEEECC---CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 70 SLTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~---~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
.+++++||+++|+. +..+ |+|||++|++|++++|+||||||||||+|+|+|+.++.. |++|+|.+||+
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~i-----L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~ 830 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVI-----LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPL 830 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEe-----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEEC
Confidence 36899999999952 2224 999999999999999999999999999999999986332 68899999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCccc-ccCCC----CCChHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGEL-VIRRS----DSSSLRN 208 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~~-~~~~~----~lSGGqk 208 (397)
++.+|||+|++.++. .+||+||+.++.. ..++..++++++++.+++.+. +..+. ++|||||
T Consensus 831 ~~~~~~~i~yv~Q~~~~~~---~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 831 DSSFQRSIGYVQQQDLHLP---TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred ChhhhcceeeecccccCCC---CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHh
Confidence 356999999977655 6899999987532 233455678899999999543 33333 6999999
Q ss_pred HHHHHHHHHcCCCC-eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHc
Q 015952 209 RMRCKAHKIGCEPS-VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLS 284 (397)
Q Consensus 209 QRvaIArAL~~~P~-iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~ 284 (397)
||++|||||+.+|+ +| +||||| ++||..... ...+.++++ .++|+|||++||+ .+.+
T Consensus 908 qRl~Ia~aL~~~P~~iL--------lLDEPT--sgLD~~~~~--~i~~~L~~l-------a~~g~tvI~t~H~~~~~~~~ 968 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLL--------FLDEPT--SGLDSQTAW--SICKLMRKL-------ADHGQAILCTIHQPSAILFE 968 (1394)
T ss_pred hHHHHHHHHHcCCCeEE--------EEcCCC--CCCCHHHHH--HHHHHHHHH-------HHcCCEEEEEecCCCHHHHH
Confidence 99999999999997 99 666666 788865544 344445443 2468999999995 3457
Q ss_pred cccEEEEEeeCC-EEeeeCCcc
Q 015952 285 LTDRARIRTYLG-ELLGIPPAK 305 (397)
Q Consensus 285 ~aDrI~v~l~~G-~iv~~g~~~ 305 (397)
.+||+ ++|++| ++++.|++.
T Consensus 969 ~~D~v-l~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 969 EFDRL-LLLQKGGQTVYFGDLG 989 (1394)
T ss_pred hcCEE-EEEcCCCEEEEECCcc
Confidence 89999 569987 999999874
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=307.17 Aligned_cols=187 Identities=13% Similarity=0.141 Sum_probs=154.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc---ccEEEECcee-------CcEEEEecCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSV-------GDGTYFLQEYTIPRGSN 162 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~---~G~I~i~G~~-------~~ig~v~Q~~~l~~~~~ 162 (397)
|+|+|++|++||+++|+||||||||||+++|+|..+ |. +|+|.++|.. +.+|||+|++.+++
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~-----~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~--- 112 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-----KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP--- 112 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEECCHHHHhhhceeeccccccCc---
Confidence 999999999999999999999999999999999988 64 8999999973 56899999998876
Q ss_pred CccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCccc-ccCCC------CCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 163 SFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGEL-VIRRS------DSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 163 ~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~~-~~~~~------~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
.+||+||+.|+.. ..++.+++++++++.+|+.+. +.... .+||||||||+|||||+.+|+++
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl---- 188 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL---- 188 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE----
Confidence 6899999988643 234556778999999999443 33332 58999999999999999999999
Q ss_pred ccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEeeCCEEeeeCCcc
Q 015952 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 229 P~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l~~G~iv~~g~~~ 305 (397)
+||||| ++||+.... ..++.++++ .++|+|||++||+ ++.+++|++ ++|++|+++..|+++
T Consensus 189 ----llDEPt--sgLD~~~~~--~l~~~L~~l-------~~~g~tvi~~~hq~~~~i~~~~D~i-~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 189 ----FCDEPT--SGLDSFMAY--SVVQVLKGL-------AQKGKTIICTIHQPSSELFELFDKI-ILMAEGRVAYLGSPD 252 (617)
T ss_pred ----EeeCCC--cchhHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCCCHHHHHHhceE-EEeeCCeEEEECCHH
Confidence 556666 777765554 344445443 2358999999994 678999999 569999999999998
Q ss_pred cc
Q 015952 306 QI 307 (397)
Q Consensus 306 el 307 (397)
++
T Consensus 253 ~~ 254 (617)
T TIGR00955 253 QA 254 (617)
T ss_pred HH
Confidence 76
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=253.60 Aligned_cols=216 Identities=18% Similarity=0.149 Sum_probs=170.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
+|+++++++++.|+++. . .+||||++.|||+++|||+||||||||++||++-+. |++|+|.+.-.
T Consensus 4 ~PLL~V~~lsk~Yg~~~---g---c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK---G---CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQP 72 (258)
T ss_pred CcceeehhhhhhhCCCc---C---ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCCc
Confidence 57899999999997543 2 899999999999999999999999999999999999 99999998664
Q ss_pred ---------------eCcEEEEecCCCCCCCCCCccHHHHH-----hcCCCChhhHHHHHHHHHHHCCCc--ccccCCCC
Q 015952 145 ---------------VGDGTYFLQEYTIPRGSNSFSLYDTR-----SLSDDASDNINMIKLWIMEGVRHG--ELVIRRSD 202 (397)
Q Consensus 145 ---------------~~~ig~v~Q~~~l~~~~~~ltv~eni-----~~~~~~~~~~~~~~~~ll~~vgl~--~~~~~~~~ 202 (397)
+..-|||-|+|.--- ....+.-.|+ +.+.+...++++.+...|+.+.++ .....|..
T Consensus 73 ~dl~~msEaeRR~L~RTeWG~VhQnP~DGL-Rm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~Prt 151 (258)
T COG4107 73 RDLYTMSEAERRRLLRTEWGFVHQNPRDGL-RMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT 151 (258)
T ss_pred hhHhhhchHHHHHHhhhccceeecCccccc-eeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccc
Confidence 235799999985210 0011222333 233445667888888999999983 45677999
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
.|||||||+.|||-|+..|++++ +|||| .+||...+. ..++.++.+. .+-|.++++||||
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvf--------MDEPT--GGLDVSVQA--RLLDllrgLv------~~l~la~viVTHDl~ 213 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVF--------MDEPT--GGLDVSVQA--RLLDLLRGLV------RELGLAVVIVTHDLA 213 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEE--------ecCCC--CCcchhhHH--HHHHHHHHHH------HhcCceEEEEechhH
Confidence 99999999999999999999994 45556 777754433 4555555542 3458899999997
Q ss_pred hHHccccEEEEEeeCCEEeeeCCcccccCCCCCCC
Q 015952 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~ 315 (397)
.+.-+|||. ++|++|++++.|-.+.+++.|.++.
T Consensus 214 VarLla~rl-mvmk~g~vve~GLTDrvLDDP~hPY 247 (258)
T COG4107 214 VARLLADRL-MVMKQGQVVESGLTDRVLDDPHHPY 247 (258)
T ss_pred HHHHhhhcc-eeecCCCEeccccccccccCCCCch
Confidence 667789999 5699999999999999999998653
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=265.47 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=163.5
Q ss_pred CeEEEEeEEEEECCC------------------ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCC
Q 015952 70 SLTDAKNKILSYTPG------------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~------------------~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~ 131 (397)
.+|+++||++.|.-. .....+.+|+||||++++||.++|||+||||||||+|+|+|.++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--- 78 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--- 78 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---
Confidence 467888888877311 01234556999999999999999999999999999999999999
Q ss_pred CCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcccccC-CCCCChH
Q 015952 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGELVIR-RSDSSSL 206 (397)
Q Consensus 132 ~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~~~~~-~~~lSGG 206 (397)
|++|+|.++|+ +++++.-..=|. +.+|.+||+.+-.. ..++.+++++++.+--+|++..+. ....|.|
T Consensus 79 --Pt~G~v~v~G~---v~~li~lg~Gf~--pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSG 151 (249)
T COG1134 79 --PTSGKVKVTGK---VAPLIELGAGFD--PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSG 151 (249)
T ss_pred --CCCceEEEcce---EehhhhcccCCC--cccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHH
Confidence 99999999996 444433221111 25899999977433 578888999999999999665444 4567999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLS 284 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~ 284 (397)
|+-|+|+|-|...+|+|||+||- +++-|+.. .+ +..+.+.+.. ++++|+|+|||+ .+.+
T Consensus 152 M~aRLaFsia~~~~pdILllDEv-lavGD~~F---------~~--K~~~rl~e~~-------~~~~tiv~VSHd~~~I~~ 212 (249)
T COG1134 152 MYARLAFSVATHVEPDILLLDEV-LAVGDAAF---------QE--KCLERLNELV-------EKNKTIVLVSHDLGAIKQ 212 (249)
T ss_pred HHHHHHHhhhhhcCCCEEEEehh-hhcCCHHH---------HH--HHHHHHHHHH-------HcCCEEEEEECCHHHHHH
Confidence 99999999999999999966666 44444443 22 3445554442 567999999994 9999
Q ss_pred cccEEEEEeeCCEEeeeCCcccccC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
+|||+ +.|++|++...|++++++.
T Consensus 213 ~Cd~~-i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 213 YCDRA-IWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hcCee-EEEeCCEEEEcCCHHHHHH
Confidence 99999 5799999999999988764
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=262.38 Aligned_cols=208 Identities=14% Similarity=0.142 Sum_probs=160.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++|+.+.|.++.+ ..-.+|+++||+|++|+|+.|+|.||||||||+|+|+|-+. |++|+|.++|.+
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVtk~~ 74 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVTKKS 74 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceecccCC
Confidence 5778899999866542 22334999999999999999999999999999999999999 999999999982
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCC--------C--hhhHHHHHHHHHHHCCCc--c-cccCCCCCChHH
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------A--SDNINMIKLWIMEGVRHG--E-LVIRRSDSSSLR 207 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~--~~~~~~~~~~ll~~vgl~--~-~~~~~~~lSGGq 207 (397)
..++-|||+|.. ...+.+|+.||+.+... . ....++...+.+..++++ . +..+..-|||||
T Consensus 75 ~~~RA~~larVfQdp~~-gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQ 153 (263)
T COG1101 75 VAKRANLLARVFQDPLA-GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQ 153 (263)
T ss_pred HHHHhhHHHHHhcchhh-CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchH
Confidence 457889999864 23447999999988643 1 222334455667777773 2 334445569999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHcc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSL 285 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~ 285 (397)
||-++++.|.++.|+|| +|||-| ++|||...+ ..++.-.++. .+.+.|.+|||| +++..|
T Consensus 154 RQalsL~MAtl~~pkiL--------LLDEHT--AALDPkta~--~vm~lT~kiV------~~~klTtlMVTHnm~~Al~y 215 (263)
T COG1101 154 RQALSLLMATLHPPKIL--------LLDEHT--AALDPKTAE--FVMELTAKIV------EEHKLTTLMVTHNMEDALDY 215 (263)
T ss_pred HHHHHHHHHhcCCCcEE--------Eecchh--hcCCcchHH--HHHHHHHHHH------HhcCCceEEEeccHHHHHhh
Confidence 99999999999999999 666667 778877665 2333333332 246789999999 599999
Q ss_pred ccEEEEEeeCCEEeeeCCc
Q 015952 286 TDRARIRTYLGELLGIPPA 304 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~ 304 (397)
.+|. |+|++|+|+.+-+-
T Consensus 216 G~Rl-ImLh~G~IvlDv~g 233 (263)
T COG1101 216 GNRL-IMLHSGKIVLDVTG 233 (263)
T ss_pred CCeE-EEEeCCeEEEEccc
Confidence 9999 67999999987443
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=311.30 Aligned_cols=232 Identities=18% Similarity=0.175 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccc--------CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECC
Q 015952 40 SWDSLVDQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 111 (397)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGp 111 (397)
.+....++..+.+|+++.+..+..... .....++++|.+++..+..+... |+||||+|++|+.+||+||
T Consensus 479 ~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~ 555 (1381)
T KOG0054|consen 479 VISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGP 555 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECC
Confidence 455666778889999999987654322 13457999999999965222112 9999999999999999999
Q ss_pred CCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHC
Q 015952 112 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 191 (397)
Q Consensus 112 nGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~v 191 (397)
-|||||||+.+|.|-++ ..+|.|.++|. ++|++|+|-+++ -||+|||.|+..-.+ ++.+++++.+
T Consensus 556 vGsGKSSLL~AiLGEm~-----~~sG~v~v~gs---iaYv~Q~pWI~n----gTvreNILFG~~~d~---~rY~~Vi~aC 620 (1381)
T KOG0054|consen 556 VGSGKSSLLSAILGEMP-----KLSGSVAVNGS---VAYVPQQPWIQN----GTVRENILFGSPYDE---ERYDKVIKAC 620 (1381)
T ss_pred CCCCHHHHHHHHhcCcc-----cccceEEEcCe---EEEeccccHhhC----CcHHHhhhcCccccH---HHHHHHHHHc
Confidence 99999999999999999 99999999995 999999999987 599999999976333 2334444444
Q ss_pred CC---------c---ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHH
Q 015952 192 RH---------G---ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 259 (397)
Q Consensus 192 gl---------~---~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~ 259 (397)
.| + +...++..|||||||||++|||+.++.+|.|||.| +|++|..... ....+
T Consensus 621 ~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp----------lSAVDahvg~-----~if~~ 685 (1381)
T KOG0054|consen 621 ALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP----------LSAVDAHVGK-----HIFEE 685 (1381)
T ss_pred cCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc----------chhhhHhhhH-----HHHHH
Confidence 43 1 22467889999999999999999999999966666 4777766554 23333
Q ss_pred hcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 260 TFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 260 l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.+ ...-++||+|+|||. .....||.| ++|++|+|.+.|+.+|+..
T Consensus 686 ci----~~~L~~KT~ILVTHql~~L~~ad~I-ivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 686 CI----RGLLRGKTVILVTHQLQFLPHADQI-IVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HH----HhhhcCCEEEEEeCchhhhhhCCEE-EEecCCeEecccCHHHHHh
Confidence 22 112378999999996 778899999 5799999999999999874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=254.78 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=121.0
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecC
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~ 154 (397)
.||+++|++ ..+ +++ +|+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|. .++|++|+
T Consensus 4 ~~l~~~~~~-~~~-----l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~--~i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYGV-FFL-----LVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGI--TPVYKPQY 69 (177)
T ss_pred CCeEEEECC-EEE-----Ecc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCE--EEEEEccc
Confidence 689999963 334 777 49999999999999999999999999999999 99999999986 48898885
Q ss_pred CCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeecccccccc
Q 015952 155 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 234 (397)
Q Consensus 155 ~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siL 234 (397)
+. ||||||||++|||||+.+|+++ +|
T Consensus 70 ~~----------------------------------------------LSgGq~qrv~laral~~~p~ll--------lL 95 (177)
T cd03222 70 ID----------------------------------------------LSGGELQRVAIAAALLRNATFY--------LF 95 (177)
T ss_pred CC----------------------------------------------CCHHHHHHHHHHHHHhcCCCEE--------EE
Confidence 32 9999999999999999999999 55
Q ss_pred chhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 235 DGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 235 DEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
|||| ++||..... ...+.+.++. .+.+.|||++||+ .+.++||++ ++|+++-. ..+++..|.
T Consensus 96 DEPt--s~LD~~~~~--~l~~~l~~~~------~~~~~tiiivsH~~~~~~~~~d~i-~~l~~~~~-----~~~~~~~~~ 159 (177)
T cd03222 96 DEPS--AYLDIEQRL--NAARAIRRLS------EEGKKTALVVEHDLAVLDYLSDRI-HVFEGEPG-----VYGIASQPK 159 (177)
T ss_pred ECCc--ccCCHHHHH--HHHHHHHHHH------HcCCCEEEEEECCHHHHHHhCCEE-EEEcCCCc-----cceeccCCc
Confidence 5555 677754433 2334443331 1234899999995 777899999 56876533 345666665
Q ss_pred CC
Q 015952 313 SS 314 (397)
Q Consensus 313 ~~ 314 (397)
..
T Consensus 160 ~~ 161 (177)
T cd03222 160 GT 161 (177)
T ss_pred ch
Confidence 43
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=289.75 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=160.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
|.+|+++|++++|+ ++.+ |+++||+|.+|+.+||||+||||||||||+|+|.+. |++|+|...+. .++
T Consensus 1 m~~i~~~~ls~~~g-~~~l-----~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~~v 68 (530)
T COG0488 1 MSMITLENLSLAYG-DRPL-----LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-LRV 68 (530)
T ss_pred CceEEEeeeEEeeC-Ccee-----ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-ceE
Confidence 46899999999995 4446 999999999999999999999999999999999999 99999998763 479
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCCh-------h---------------------------hHHHHHHHHHHHCCCc
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDAS-------D---------------------------NINMIKLWIMEGVRHG 194 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~-------~---------------------------~~~~~~~~ll~~vgl~ 194 (397)
||+.|++.+.. ..||.+.+..+.... + +.+.++..++..+|+.
T Consensus 69 ~~l~Q~~~~~~---~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 69 GYLSQEPPLDP---EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred EEeCCCCCcCC---CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 99999998876 569999887764310 0 1124567788888885
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 195 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 195 ~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
.......+||||||.||+||+||..+|++| +||||| +.||. ..+..+.+.+ ....| ||
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlL--------LLDEPT--NHLD~------~~i~WLe~~L-----~~~~g-tv 203 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLL--------LLDEPT--NHLDL------ESIEWLEDYL-----KRYPG-TV 203 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEE--------EEcCCC--cccCH------HHHHHHHHHH-----HhCCC-cE
Confidence 546667889999999999999999999999 777778 77773 3455666553 23467 99
Q ss_pred EEEech--hHHccccEEEEEeeCCEEeeeC
Q 015952 275 VVVTHG--DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 275 IivTH~--~~~~~aDrI~v~l~~G~iv~~g 302 (397)
|+|||| ++-..|++| +.++.|++...+
T Consensus 204 iiVSHDR~FLd~V~t~I-~~ld~g~l~~y~ 232 (530)
T COG0488 204 IVVSHDRYFLDNVATHI-LELDRGKLTPYK 232 (530)
T ss_pred EEEeCCHHHHHHHhhhe-EEecCCceeEec
Confidence 999995 999999999 689999887654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=318.74 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=143.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ .|||++|++.+++ .|++||+.+
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~---~i~yv~Q~~~l~~----~Tv~enI~~ 743 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER---SIAYVPQQAWIMN----ATVRGNILF 743 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC---eEEEEeCCCccCC----CcHHHHHHc
Confidence 999999999999999999999999999999999999 9999999854 6999999998875 699999998
Q ss_pred CCCChh-hHHH-----HHHHHHHHC--CC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 173 SDDASD-NINM-----IKLWIMEGV--RH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 173 ~~~~~~-~~~~-----~~~~ll~~v--gl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
+..... ...+ .+.+.++.+ |+ .....++.+|||||||||+|||||+.+|+++ +||||| ++|
T Consensus 744 ~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~il--------lLDEP~--saL 813 (1560)
T PTZ00243 744 FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY--------LLDDPL--SAL 813 (1560)
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEcCcc--ccC
Confidence 753111 1111 122334444 44 2335668899999999999999999999999 555555 777
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
|..... ...+ +.+ .....|+|+|++||+ .....||+| ++|++|++++.|++++++..
T Consensus 814 D~~~~~--~i~~---~~~----~~~~~~~TvIlvTH~~~~~~~ad~i-i~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 814 DAHVGE--RVVE---ECF----LGALAGKTRVLATHQVHVVPRADYV-VALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred CHHHHH--HHHH---HHH----HHhhCCCEEEEEeCCHHHHHhCCEE-EEEECCEEEEecCHHHHHhC
Confidence 754433 1222 211 111258999999996 555789999 57999999999999887643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=316.92 Aligned_cols=209 Identities=14% Similarity=0.098 Sum_probs=161.1
Q ss_pred eEEEEeEEEEECCCce-------EeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 71 LTDAKNKILSYTPGAW-------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~-------v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
.+.++||++.++.... ......|+|||++|++|++++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~inG 943 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 943 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEEECC
Confidence 5899999998742100 00011299999999999999999999999999999999987621 3789999999
Q ss_pred e-------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCccc-ccCC-----CCC
Q 015952 144 S-------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGEL-VIRR-----SDS 203 (397)
Q Consensus 144 ~-------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~~-~~~~-----~~l 203 (397)
. ++.+||++|++.+++ .+||+||+.++.. ..++..++++++++.++|.+. +..+ ..|
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~---~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSP---QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred ccCChHHhhhheEEEccccccCC---CCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCc
Confidence 6 246899999987766 6899999987532 223445678999999999543 3332 479
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--- 280 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--- 280 (397)
||||||||+||+||+.+|++| +||||| ++||..... ..++.++++ .++|+|||++||+
T Consensus 1021 SgGerkRvsIa~aL~~~P~lL--------~LDEPT--sgLD~~~a~--~v~~~L~~l-------~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1021 STEQRKRLTIAVELVANPSII--------FMDEPT--SGLDARAAA--IVMRTVRNT-------VDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred CHHHHHHHHHHHHHhhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCCCH
Confidence 999999999999999999999 555556 777755443 344555443 2468999999995
Q ss_pred hHHccccEEEEEeeC-CEEeeeCCcc
Q 015952 281 DLLSLTDRARIRTYL-GELLGIPPAK 305 (397)
Q Consensus 281 ~~~~~aDrI~v~l~~-G~iv~~g~~~ 305 (397)
++...||++ ++|++ |+++..|++.
T Consensus 1082 ~i~~~~D~v-llL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1082 DIFEAFDEL-LLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHhCCEE-EEEcCCCEEEEECCcc
Confidence 467899999 56986 8999999863
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=268.29 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=162.7
Q ss_pred CeEEEEeEEEEECCC---------------ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC
Q 015952 70 SLTDAKNKILSYTPG---------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS 134 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~---------------~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p 134 (397)
.++.++|++|.|.-. ..-..+.|++||||+|++|++++++|||||||||++|+++|++. |
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p 76 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-----P 76 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-----c
Confidence 477888888888310 00124567999999999999999999999999999999999999 9
Q ss_pred cccEEEECce---------eCcEEEEe-cCCCCCCCCCCccHHHHHhcC----CCChhhHHHHHHHHHHHCCCc-ccccC
Q 015952 135 ERAQVTYNSS---------VGDGTYFL-QEYTIPRGSNSFSLYDTRSLS----DDASDNINMIKLWIMEGVRHG-ELVIR 199 (397)
Q Consensus 135 ~~G~I~i~G~---------~~~ig~v~-Q~~~l~~~~~~ltv~eni~~~----~~~~~~~~~~~~~ll~~vgl~-~~~~~ 199 (397)
++|.|.++|. -+++++|+ |...+.+. +.+.|.+... .-+.+..+++...+.+.++++ ....+
T Consensus 77 ~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd---lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~ 153 (325)
T COG4586 77 TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD---LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP 153 (325)
T ss_pred CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee---chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhh
Confidence 9999999998 14677775 33344442 2344433322 125566778888999999994 45666
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
...||-|||.|+.||.||+++|++| +||||| -+||...+. ..++-+.+. ..+.+.||++.||
T Consensus 154 vr~LSlGqRmraeLaaaLLh~p~VL--------fLDEpT--vgLDV~aq~--~ir~Flke~------n~~~~aTVllTTH 215 (325)
T COG4586 154 VRKLSLGQRMRAELAAALLHPPKVL--------FLDEPT--VGLDVNAQA--NIREFLKEY------NEERQATVLLTTH 215 (325)
T ss_pred hhhccchHHHHHHHHHHhcCCCcEE--------EecCCc--cCcchhHHH--HHHHHHHHH------HHhhCceEEEEec
Confidence 7889999999999999999999999 777777 577755443 223333222 2357999999999
Q ss_pred --hhHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 280 --~~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+++.++|||| ++|++|+++.+|+.+++..+
T Consensus 216 ~~~di~~lc~rv-~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 216 IFDDIATLCDRV-LLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred chhhHHHhhhhe-EEeeCCcEeecccHHHHHHH
Confidence 5999999999 57999999999998776543
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=253.21 Aligned_cols=208 Identities=16% Similarity=0.146 Sum_probs=161.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++|++.+-.+.+.+ |++|||+|++||+.+|+||||||||||.++|+|.-. +.+++|+|.++|+
T Consensus 1 m~~L~I~dLhv~v~~~keI-----LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEI-----LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILE 72 (251)
T ss_pred CceeEEeeeEEEecCchhh-----hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCccccc
Confidence 4689999999998643346 999999999999999999999999999999999764 4589999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--h-----hhHHHHHHHHHHHCCCcc-cccCCC--CCChHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--S-----DNINMIKLWIMEGVRHGE-LVIRRS--DSSSLR 207 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~-----~~~~~~~~~ll~~vgl~~-~~~~~~--~lSGGq 207 (397)
+..|..-||.|.=++ +.++.+.+..+... . .+....+.+.++.+++.. ...+.. .+|||+
T Consensus 73 l~~~ERAr~GifLafQ~P~ei~---GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGE 149 (251)
T COG0396 73 LSPDERARAGIFLAFQYPVEIP---GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGE 149 (251)
T ss_pred CCHhHHHhcCCEEeecCCccCC---CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcch
Confidence 457888899987665 68888888765541 1 244567788999999944 333433 359999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~a 286 (397)
|+|..|+..++.+|++. +||||- |+||. ..++.+.+.++. -+..|.++++||| ..+..+.
T Consensus 150 kKR~EilQ~~~lePkl~--------ILDE~D--SGLDI------dalk~V~~~i~~---lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 150 KKRNEILQLLLLEPKLA--------ILDEPD--SGLDI------DALKIVAEGINA---LREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred HHHHHHHHHHhcCCCEE--------EecCCC--cCccH------HHHHHHHHHHHH---HhcCCCeEEEEecHHHHHhhc
Confidence 99999999999999999 555555 77773 233444333210 0247999999999 4666666
Q ss_pred --cEEEEEeeCCEEeeeCCccccc
Q 015952 287 --DRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 287 --DrI~v~l~~G~iv~~g~~~el~ 308 (397)
|++.| |.+|+|+..|.+ ++.
T Consensus 211 ~pD~vhv-l~~GrIv~sG~~-el~ 232 (251)
T COG0396 211 KPDKVHV-LYDGRIVKSGDP-ELA 232 (251)
T ss_pred CCCEEEE-EECCEEEecCCH-HHH
Confidence 99974 999999999998 554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=305.97 Aligned_cols=228 Identities=14% Similarity=0.169 Sum_probs=178.3
Q ss_pred HHHHHHHHHhcccccc--c--c-------CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHH
Q 015952 49 RRDAVFREVLQSYDQL--R--T-------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~--~--~-------~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKS 117 (397)
.+++|+.|-.+.++|. . . +...-|+++|++.+|.++.+ .+ ||||||+|++||.+||||..|||||
T Consensus 1105 ~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTGaGKS 1180 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTGAGKS 1180 (1381)
T ss_pred hhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCCCCHH
Confidence 3588999988865551 1 1 03447999999999976643 22 9999999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHH
Q 015952 118 SLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWI 187 (397)
Q Consensus 118 TLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~l 187 (397)
||++++-++.. |.+|+|.|||. |++++.+||+|.+|.+ |++.|+-=... -.++.+-++
T Consensus 1181 SL~~aLFRl~e-----~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG----TvR~NLDPf~e---~sD~~IW~A 1248 (1381)
T KOG0054|consen 1181 SLILALFRLVE-----PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG----TVRFNLDPFDE---YSDDEIWEA 1248 (1381)
T ss_pred HHHHHHHHhcC-----ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC----ccccccCcccc---cCHHHHHHH
Confidence 99999999999 99999999998 6899999999999974 88888742221 122334455
Q ss_pred HHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHH
Q 015952 188 MEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 255 (397)
Q Consensus 188 l~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~ 255 (397)
|+.++|.+ ....+..+|-||||.+|+||||+++++|| +|||+| ++.|..+|. -..+
T Consensus 1249 Le~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skIL--------vLDEAT--AsVD~~TD~--lIQ~ 1316 (1381)
T KOG0054|consen 1249 LERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKIL--------VLDEAT--ASVDPETDA--LIQK 1316 (1381)
T ss_pred HHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEE--------EEeccc--ccCChHHHH--HHHH
Confidence 66665521 12234556999999999999999999999 777777 788877765 2334
Q ss_pred HHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 256 IVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 256 ~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.|++.+ .++|||.|.|+ ...--|||| ++|++|++++.++|.+++.++.+
T Consensus 1317 tIR~~F--------~dcTVltIAHRl~TVmd~DrV-lVld~G~v~EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1317 TIREEF--------KDCTVLTIAHRLNTVMDSDRV-LVLDAGRVVEFDSPAELLSDKDS 1366 (1381)
T ss_pred HHHHHh--------cCCeEEEEeeccchhhhcCeE-EEeeCCeEeecCChHHHHhCCcc
Confidence 444433 68999999996 555559999 57999999999999999987653
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=248.00 Aligned_cols=147 Identities=21% Similarity=0.166 Sum_probs=111.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----CcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-----GDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-----~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
|+|+||+|++|++++|+||||||||||+|+|. +++|++.++|.. ..++|++|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccccccccEEEEhH--------------
Confidence 99999999999999999999999999999983 357999988751 12333333
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCC--CCeEeeccccccccchhhhhccc
Q 015952 168 DTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCE--PSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 168 eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~--P~iLllDEP~~siLDEpT~~s~L 243 (397)
.++++.+++.. ..+++.+||||||||++|||||+.+ |+++|+ |||| ++|
T Consensus 68 -----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLl--------DEPt--~~L 120 (176)
T cd03238 68 -----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFIL--------DEPS--TGL 120 (176)
T ss_pred -----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEE--------eCCc--ccC
Confidence 35788899843 5677899999999999999999999 999955 5555 666
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEe
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv 299 (397)
|..... ...+.+.++ .+.|+|||++||+ ...+.|||+ ++|.+|+..
T Consensus 121 D~~~~~--~l~~~l~~~-------~~~g~tvIivSH~~~~~~~~d~i-~~l~~g~~~ 167 (176)
T cd03238 121 HQQDIN--QLLEVIKGL-------IDLGNTVILIEHNLDVLSSADWI-IDFGPGSGK 167 (176)
T ss_pred CHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHhCCEE-EEECCCCCC
Confidence 644333 233444332 1368999999995 445789999 569775543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-32 Score=287.86 Aligned_cols=185 Identities=13% Similarity=0.026 Sum_probs=142.0
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE-----------ECc
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 143 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~-----------i~G 143 (397)
++++++|+.+..+ |++++ .+++|++++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~~~-----L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNGFK-----LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCcee-----EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 3489999754334 99999 999999999999999999999999999999 9999997 888
Q ss_pred ee------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHH
Q 015952 144 SV------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRM 210 (397)
Q Consensus 144 ~~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQR 210 (397)
.. .++++.+|.....+..+..||.|++... +....+.++++.+++.. ..+.+.+||||||||
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV-----DERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred hHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh-----hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 51 2356667754433211124899988642 23456788999999954 567788999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
|+||+||+.+|++| +||||| ++||..... ...+.+.++ .+ |+|||+|||+ .+..+|||
T Consensus 221 v~ia~al~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~i~~l-------~~-g~tvIivsHd~~~l~~~~D~ 280 (590)
T PRK13409 221 VAIAAALLRDADFY--------FFDEPT--SYLDIRQRL--NVARLIREL-------AE-GKYVLVVEHDLAVLDYLADN 280 (590)
T ss_pred HHHHHHHhcCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HC-CCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999 555556 777754433 344444443 24 8999999995 78899999
Q ss_pred EEEEeeCC
Q 015952 289 ARIRTYLG 296 (397)
Q Consensus 289 I~v~l~~G 296 (397)
| ++|+++
T Consensus 281 v-~vl~~~ 287 (590)
T PRK13409 281 V-HIAYGE 287 (590)
T ss_pred E-EEEeCC
Confidence 9 458763
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=307.89 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=150.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---------eCcEEEEecCCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---------VGDGTYFLQEYTIPRGSNS 163 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---------~~~ig~v~Q~~~l~~~~~~ 163 (397)
|+|+|+++++||+++|+||||||||||+|+|+|+... ...|++|+|.++|. ++.++|++|+..+++ .
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~---~ 152 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP---H 152 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC---C
Confidence 9999999999999999999999999999999998621 01179999999996 235999999987776 6
Q ss_pred ccHHHHHhcCCC-----------ChhhHHHH-HHHHHHHCCCccc-cc-----CCCCCChHHHHHHHHHHHHcCCCCeEe
Q 015952 164 FSLYDTRSLSDD-----------ASDNINMI-KLWIMEGVRHGEL-VI-----RRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (397)
Q Consensus 164 ltv~eni~~~~~-----------~~~~~~~~-~~~ll~~vgl~~~-~~-----~~~~lSGGqkQRvaIArAL~~~P~iLl 225 (397)
+||.||+.|+.. ..++..++ ++.+++.+||.+. +. .+.++||||||||+||+||+.+|+++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl- 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ- 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE-
Confidence 899999988532 11222223 4668999999543 22 34678999999999999999999999
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEeeCCEEeeeC
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l~~G~iv~~g 302 (397)
+||||| ++||+.... ...+.++++. .+.|+|||+++|+ .+.+++|++ ++|++|+++..|
T Consensus 232 -------llDEPT--sgLD~~~~~--~i~~~L~~la------~~~g~tvii~~Hq~~~~i~~l~D~v-~~L~~G~iv~~G 293 (1394)
T TIGR00956 232 -------CWDNAT--RGLDSATAL--EFIRALKTSA------NILDTTPLVAIYQCSQDAYELFDKV-IVLYEGYQIYFG 293 (1394)
T ss_pred -------EEeCCC--CCcCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCCCHHHHHhhceE-EEEeCCeEEEEC
Confidence 555556 777765544 3444554431 2358999999994 688999999 569999999999
Q ss_pred Ccccc
Q 015952 303 PAKQI 307 (397)
Q Consensus 303 ~~~el 307 (397)
+++++
T Consensus 294 ~~~~~ 298 (1394)
T TIGR00956 294 PADKA 298 (1394)
T ss_pred CHHHH
Confidence 99876
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=236.26 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=114.8
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-------- 145 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-------- 145 (397)
++|++++|.+ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~~~~~~~~~-~~~-----l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~~~~~~ 70 (157)
T cd00267 2 IENLSFRYGG-RTA-----LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAKLPLEE 70 (157)
T ss_pred eEEEEEEeCC-eee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccCCHHH
Confidence 6899999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
+.++|+|| |||||+||++||||++.+|++
T Consensus 71 ~~~~i~~~~q-------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 71 LRRRIGYVPQ-------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred HHhceEEEee-------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 23444444 999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+ +||||| ++||..... ...+.+.+. .+.++|++++||+ ++..+||++ +.+++|+
T Consensus 102 ~--------ilDEp~--~~lD~~~~~--~l~~~l~~~-------~~~~~tii~~sh~~~~~~~~~d~i-~~l~~g~ 157 (157)
T cd00267 102 L--------LLDEPT--SGLDPASRE--RLLELLREL-------AEEGRTVIIVTHDPELAELAADRV-IVLKDGK 157 (157)
T ss_pred E--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHHhCCEE-EEEeCcC
Confidence 9 555555 677744332 233333332 1246899999994 778889999 4688874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=283.85 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=173.3
Q ss_pred CeEEEEeEEEEECCCc--eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 70 SLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~--~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.-+.++|++.....+. ..+. |+|||..+++||++||+|||||||||||++|+|....+. ..+|+|.+||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~ 98 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRD 98 (613)
T ss_pred ceeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCc
Confidence 3578899998885441 1133 999999999999999999999999999999999997433 58999999995
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCcccccC-C-----CCCChHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGELVIR-R-----SDSSSLR 207 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~~~~~-~-----~~lSGGq 207 (397)
++..|||.|+..+++ .+||+|++.+... ..++.+++++++++.+||....+. . ..+||||
T Consensus 99 ~~~~~~~s~yV~QdD~l~~---~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 99 SRSFRKISGYVQQDDVLLP---TLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhhhheeEEEcccccccc---cccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 467899999998887 7999999988654 347788899999999999543332 2 3589999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLS 284 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~ 284 (397)
|+||+||.-|+.+|.+| +||||| ++||..+.. +.++.++++ +++|+|||++=|. .+..
T Consensus 176 rkRvsia~Ell~~P~iL--------flDEPT--SGLDS~sA~--~vv~~Lk~l-------A~~grtVi~tIHQPss~lf~ 236 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSIL--------FLDEPT--SGLDSFSAL--QVVQLLKRL-------ARSGRTVICTIHQPSSELFE 236 (613)
T ss_pred hhHHHHHHHHHcCCCEE--------EecCCC--CCcchhhHH--HHHHHHHHH-------HhCCCEEEEEEeCCcHHHHH
Confidence 99999999999999999 777778 899977655 445555554 2459999999993 9999
Q ss_pred cccEEEEEeeCCEEeeeCCcccc
Q 015952 285 LTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+.|++ ++|.+|+++..|+++++
T Consensus 237 lFD~l-~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 237 LFDKL-LLLSEGEVVYSGSPREL 258 (613)
T ss_pred HHhHh-hhhcCCcEEEecCHHHH
Confidence 99999 57999999999999764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=289.58 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=140.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+|+++|++++|++ ..+ |+|+||+|++|+++|||||||||||||+|+|+|..... .|++|+|.+.++.
T Consensus 175 ~~~I~i~nls~~y~~-~~l-----l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISVGG-RDL-----IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEeCC-CEE-----EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCC
Confidence 457999999999963 335 99999999999999999999999999999999975211 2788888653321
Q ss_pred ---------------------CcEEEEecCCCCCCCCCCccHHHHHhcC----------------------CCChhhHHH
Q 015952 146 ---------------------GDGTYFLQEYTIPRGSNSFSLYDTRSLS----------------------DDASDNINM 182 (397)
Q Consensus 146 ---------------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~----------------------~~~~~~~~~ 182 (397)
..+++++|++.+.. .++.++.... .........
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEF----ETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh----cccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 11344444432211 0111110000 001113345
Q ss_pred HHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 183 IKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 183 ~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
++.+++..+|+. . ....+.+|||||||||+|||||+.+|++| +||||| ++||... .+.+.+.
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lL--------lLDEPt--~~LD~~~------~~~l~~~ 386 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLL--------LLDEPT--NHLDLHA------VLWLETY 386 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE--------EEECCC--CCCCHHH------HHHHHHH
Confidence 667788888883 3 35567899999999999999999999999 556666 7777443 2334443
Q ss_pred cCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-eeCCcccc
Q 015952 261 FNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GIPPAKQI 307 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g~~~el 307 (397)
+ .+.+.|||+|||+ ++..+||+| ++|++|+++ ..|+..++
T Consensus 387 L------~~~~~tviivsHd~~~l~~~~d~i-~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 387 L------LKWPKTFIVVSHAREFLNTVVTDI-LHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred H------HHcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCCHHHH
Confidence 3 1236799999995 788899999 579999997 45665443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=306.98 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=150.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc---ccEEEECce-------eCcEEEEecCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSS-------VGDGTYFLQEYTIPRGSN 162 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~---~G~I~i~G~-------~~~ig~v~Q~~~l~~~~~ 162 (397)
|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+|.+||. ++.++||+|+..+++
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~--- 252 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG--- 252 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEechhhcccceeEEecccccCCC---
Confidence 999999999999999999999999999999999999 87 999999997 357999999987776
Q ss_pred CccHHHHHhcCCC-C-------------hhhH------------------------HHHHHHHHHHCCCccc------cc
Q 015952 163 SFSLYDTRSLSDD-A-------------SDNI------------------------NMIKLWIMEGVRHGEL------VI 198 (397)
Q Consensus 163 ~ltv~eni~~~~~-~-------------~~~~------------------------~~~~~~ll~~vgl~~~------~~ 198 (397)
.+||+||+.|+.. . .++. +..++.+++.+||.+. +.
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 6999999988532 0 0110 0134678999999542 33
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
.+.++||||||||+||++|+.+|+++++ |||| ++||+.+.. +..+.++++. ...|+|||+++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlll--------DEPT--sGLDs~t~~--~i~~~Lr~la------~~~g~Tviis~ 394 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFM--------DEIS--TGLDSSTTY--QIVKCLQQIV------HLTEATVLMSL 394 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEE--------eCCC--cCccHHHHH--HHHHHHHHHH------HhcCCEEEEEe
Confidence 4678999999999999999999999955 5555 666655443 3444444431 23589999999
Q ss_pred ch---hHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 279 HG---DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 279 H~---~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
|+ ++..++|+| ++|++|+++..|+++++.
T Consensus 395 Hqp~~~i~~lfD~v-ilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 395 LQPAPETFDLFDDI-ILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred cCCCHHHHHHhheE-EEeeCceEEEeCCHHHHH
Confidence 93 788999999 569999999999988764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=243.18 Aligned_cols=184 Identities=19% Similarity=0.156 Sum_probs=115.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHH-HHHHcccC----CC-----------CCCCcccEEEECceeCcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV-NRISKVFE----ND-----------KFASERAQVTYNSSVGDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl-~~I~Gl~~----~~-----------~~~p~~G~I~i~G~~~~ig~v~Q~~~ 156 (397)
|+++||+|++||+++|+||||||||||+ ..|...-+ .+ ...|..++ +.| ...++.+|++.
T Consensus 11 l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ 86 (226)
T cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEG--LSPAIAIDQKT 86 (226)
T ss_pred cccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccC--CCceEEecCCC
Confidence 9999999999999999999999999996 33321000 00 00022121 111 23345555543
Q ss_pred CCCCCCCccHH---HHHhcC--CCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC--CeEeec
Q 015952 157 IPRGSNSFSLY---DTRSLS--DDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP--SVIRKV 227 (397)
Q Consensus 157 l~~~~~~ltv~---eni~~~--~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P--~iLllD 227 (397)
... .+..++. +...+. .........+ .++++.+++.. ...++.+||||||||++|||||+.+| ++|
T Consensus 87 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ll--- 161 (226)
T cd03270 87 TSR-NPRSTVGTVTEIYDYLRLLFARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLY--- 161 (226)
T ss_pred CCC-CCCccHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEE---
Confidence 211 1122322 222111 1112222333 46899999953 57789999999999999999999998 599
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEee
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLG 300 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~ 300 (397)
+||||| ++||..... ...+.+.++ .+.|.|||+|||+ +...+|||+ ++| ++|+|++
T Consensus 162 -----llDEPt--~gLD~~~~~--~l~~~l~~~-------~~~g~tii~itH~~~~~~~~d~i-~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 162 -----VLDEPS--IGLHPRDND--RLIETLKRL-------RDLGNTVLVVEHDEDTIRAADHV-IDIGPGAGVHGGEIVA 224 (226)
T ss_pred -----EEeCCc--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEEeCHHHHHhCCEE-EEeCCCccccCCEEEe
Confidence 555555 666654333 334444433 2358999999995 445799999 579 9999998
Q ss_pred eC
Q 015952 301 IP 302 (397)
Q Consensus 301 ~g 302 (397)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=229.87 Aligned_cols=194 Identities=14% Similarity=0.139 Sum_probs=151.4
Q ss_pred CeEEEEeEEEEECC---CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 70 SLTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~---~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
..+.++|++|+|.- +. ..+.+|+++||+++.|||++|-||||+|||||||++.|-|. |++|+|.+.-.
T Consensus 3 ~~l~v~~~~KtFtlH~q~G--i~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~ 75 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGG--VRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGE 75 (235)
T ss_pred ceeeeecchhheEeeecCC--EEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcc
Confidence 36899999999931 22 13344999999999999999999999999999999999999 99999998654
Q ss_pred ----------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-c-ccCCCC
Q 015952 145 ----------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-L-VIRRSD 202 (397)
Q Consensus 145 ----------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~-~~~~~~ 202 (397)
++.||||.|--...+ ..+..|.++-+.. +.+..+.++..++.++++.+ + .-.|..
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviP---RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaT 152 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIP---RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPAT 152 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhcc---CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcc
Confidence 368999999865544 2455555443322 56677888999999999943 3 456888
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-- 280 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-- 280 (397)
.|||+||||.|||.++.+-+|| +||||| ++||..+.. ..++.|.+. +..|.++|=|-||
T Consensus 153 FSGGEqQRVNIaRgfivd~pIL--------LLDEPT--asLDa~Nr~--vVveli~e~-------Ka~GaAlvGIFHDee 213 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPIL--------LLDEPT--ASLDATNRA--VVVELIREA-------KARGAALVGIFHDEE 213 (235)
T ss_pred cCCchheehhhhhhhhccCceE--------EecCCc--ccccccchH--HHHHHHHHH-------HhcCceEEEeeccHH
Confidence 8999999999999999999999 667777 888876654 344555443 3589999999996
Q ss_pred hHHccccEEEEEe
Q 015952 281 DLLSLTDRARIRT 293 (397)
Q Consensus 281 ~~~~~aDrI~v~l 293 (397)
.-...|||+ +-|
T Consensus 214 vre~vadR~-~~~ 225 (235)
T COG4778 214 VREAVADRL-LDV 225 (235)
T ss_pred HHHHHhhhe-eec
Confidence 336789999 434
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-30 Score=222.94 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=103.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSN 162 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~ 162 (397)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. +..++|++|++.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--- 72 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--- 72 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT---
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----cccccccccccccccccccccccccccccccccccc---
Confidence 689999999999999999999999999999999999 99999999997 468999999988776
Q ss_pred CccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-ccc----CCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 163 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVI----RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 163 ~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~----~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+|+.+| .....+.++++.+++.. ... +...||||||||++|||||+.+|+++++|||
T Consensus 73 ~~tv~~~---------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 73 GLTVREN---------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp TSBHHHH---------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccc---------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6889998 33456778888888733 222 3488899999999999999999999955555
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=253.19 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=187.2
Q ss_pred CCCcCCCCCCcchhhhhHHHHHHHHHH-------HHHHHHHh---ccccccccC--------------------------
Q 015952 24 DFDIPLLSGDDEGSRDSWDSLVDQRRR-------DAVFREVL---QSYDQLRTR-------------------------- 67 (397)
Q Consensus 24 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~-------------------------- 67 (397)
=|||||++|....+..+++.+.+++.+ ..++.|++ +....++++
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~ 247 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGREL 247 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCcch
Confidence 489999999999999999999999975 23444444 333222221
Q ss_pred ------------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc
Q 015952 68 ------------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135 (397)
Q Consensus 68 ------------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~ 135 (397)
..+.++++|++.. . . ++|+||++++||+++|.|--|||+|-|+++|.|+.+ +.
T Consensus 248 ~~~~~~~~~~~~~~~~l~v~~l~~~----~-~-----~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~ 312 (500)
T COG1129 248 EDLFPEPPEEGIGEPVLEVRNLSGG----G-K-----VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----AS 312 (500)
T ss_pred hhhcccccccCCCCcEEEEecCCCC----C-c-----eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CC
Confidence 0112333333311 1 1 789999999999999999999999999999999998 99
Q ss_pred ccEEEECce-----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC---------ChhhHHHHHHHHHHHCCC--
Q 015952 136 RAQVTYNSS-----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---------ASDNINMIKLWIMEGVRH-- 193 (397)
Q Consensus 136 ~G~I~i~G~-----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---------~~~~~~~~~~~ll~~vgl-- 193 (397)
+|+|.++|+ +..|+||+.+..-..-...+++.+|+.++.. .....++.+.++.+.+++
T Consensus 313 ~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~ 392 (500)
T COG1129 313 SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392 (500)
T ss_pred CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc
Confidence 999999998 2479999988543222236899999987621 123334567788889988
Q ss_pred cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 194 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 194 ~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
.........||||-||+|.|||.|+.+|++| +||||| .+.|-.... +..+.+.++ .++|++
T Consensus 393 ~s~~~~v~~LSGGNQQKVvlarwL~~~p~vL--------ilDEPT--RGIDVGAK~--eIy~li~~l-------A~~G~a 453 (500)
T COG1129 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVL--------ILDEPT--RGIDVGAKA--EIYRLIREL-------AAEGKA 453 (500)
T ss_pred CCccchhhcCCchhhhhHHHHHHHhcCCCEE--------EECCCC--cCcccchHH--HHHHHHHHH-------HHCCCE
Confidence 3345567889999999999999999999999 777778 788865443 455666555 368999
Q ss_pred EEEEech--hHHccccEEEEEeeCCEEeeeCCcc
Q 015952 274 VVVVTHG--DLLSLTDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 274 VIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~ 305 (397)
||++|-+ ++..+|||| ++|++|+++..-+.+
T Consensus 454 il~iSSElpEll~~~DRI-lVm~~Gri~~e~~~~ 486 (500)
T COG1129 454 ILMISSELPELLGLSDRI-LVMREGRIVGELDRE 486 (500)
T ss_pred EEEEeCChHHHHhhCCEE-EEEECCEEEEEeccc
Confidence 9999995 999999999 569999999865443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=259.41 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=153.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
..+++++|++++|+++..+ ++++||.|.+|+.+|||||||||||||+|+|+|... |.+|+|.++- .-++
T Consensus 319 ~~vl~~~~~~~~y~~~~~l-----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~-~v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGE-TVKI 387 (530)
T ss_pred CeeEEEeccccccCCCcee-----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCC-ceEE
Confidence 4689999999999655445 999999999999999999999999999999999999 9999999865 3689
Q ss_pred EEEecCCCC-CCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cc-cccCCCCCChHHHHHHHHHHHHcCCCCeEe
Q 015952 149 TYFLQEYTI-PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (397)
Q Consensus 149 g~v~Q~~~l-~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLl 225 (397)
||+.|+..- .. ..|+.|++.-...... ...+..+|.++++ ++ ..++...||||||-|+++|+.++.+|.+|
T Consensus 388 gyf~Q~~~~l~~---~~t~~d~l~~~~~~~~--e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL- 461 (530)
T COG0488 388 GYFDQHRDELDP---DKTVLEELSEGFPDGD--EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL- 461 (530)
T ss_pred EEEEehhhhcCc---cCcHHHHHHhhCcccc--HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE-
Confidence 999999743 33 5699999865442111 5667789999999 33 45566789999999999999999999999
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeee
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~ 301 (397)
|||||| +.||.. .++.+.+.+ ..-.-|||+|||| ++.+.|+++ +.+++ ++...
T Consensus 462 -------iLDEPT--NhLDi~------s~~aLe~aL------~~f~Gtvl~VSHDr~Fl~~va~~i-~~~~~-~~~~~ 516 (530)
T COG0488 462 -------LLDEPT--NHLDIE------SLEALEEAL------LDFEGTVLLVSHDRYFLDRVATRI-WLVED-KVEEF 516 (530)
T ss_pred -------EEcCCC--ccCCHH------HHHHHHHHH------HhCCCeEEEEeCCHHHHHhhcceE-EEEcC-ceeEc
Confidence 777778 777743 344554443 1223489999995 999999999 45776 54443
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=280.71 Aligned_cols=207 Identities=14% Similarity=0.127 Sum_probs=173.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
...+.++|+++.|+.... |++++|+.|++||+.|++|||||||||++|+|.|..+ |++|++.++|.
T Consensus 562 ~~~~~~~~L~k~y~~~~~-----Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~ 631 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG-----AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITV 631 (885)
T ss_pred cceEEEcceeeeecchhh-----hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCcccc
Confidence 356889999999964431 3899999999999999999999999999999999999 99999999887
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRva 212 (397)
++.+||.||...+.. .+|.+|++.+..+ +..+.++.++++++.++| .+.++....+|||+|+|++
T Consensus 632 ~~~~~~~~~~iGyCPQ~d~l~~---~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 632 STDFQQVRKQLGYCPQFDALWE---ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLS 708 (885)
T ss_pred ccchhhhhhhcccCCchhhhhh---hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHH
Confidence 245999999988877 6999999988654 456777889999999999 6667777888999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc-ccCCceEEEEec--hhHHccccEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS-FRDDKPVVVVTH--GDLLSLTDRA 289 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~-~~~g~TVIivTH--~~~~~~aDrI 289 (397)
+|.|++.+|+++ +||||| +++|+..+ +.+.+++ .. .++|+.||++|| +++..+|||+
T Consensus 709 ~aialig~p~vi--------~LDEPs--tGmDP~ar------r~lW~ii----~~~~k~g~aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 709 FAIALIGDPSVI--------LLDEPS--TGLDPKAR------RHLWDII----ARLRKNGKAIILTSHSMEEAEALCTRT 768 (885)
T ss_pred HHHHHhcCCCEE--------EecCCC--CCCCHHHH------HHHHHHH----HHHHhcCCEEEEEcCCHHHHHHHhhhh
Confidence 999999999999 666666 78886433 3444433 11 245669999999 6999999999
Q ss_pred EEEeeCCEEeeeCCcccccC
Q 015952 290 RIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~ 309 (397)
++ |.+|++...|+++++-.
T Consensus 769 aI-mv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 769 AI-MVIGQLRCIGSPQELKS 787 (885)
T ss_pred he-eecCeeEEecChHHHHh
Confidence 75 99999999999988753
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=226.16 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=137.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++.+|++..-+. ..+ +.++||++.+||++-|.||||||||||+|+|+||.+ |++|+|.++|..
T Consensus 2 ~L~a~~L~~~R~e-~~l-----f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~~~ 70 (209)
T COG4133 2 MLEAENLSCERGE-RTL-----FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQNVR 70 (209)
T ss_pred cchhhhhhhccCc-cee-----ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCccch
Confidence 5778888877643 224 899999999999999999999999999999999999 999999999862
Q ss_pred ----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChh-hHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD-NINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~-~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
..+-|+--.+.+-. .+|++||+.|...... .....+.++++.||| +..+....+||-|||+||||||-++.
T Consensus 71 ~~~~~~l~yLGH~~giK~---eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 71 ESYHQALLYLGHQPGIKT---ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS 147 (209)
T ss_pred hhHHHHHHHhhccccccc---hhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC
Confidence 22334433334433 6899999998654111 234567789999999 55667788999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEechhHHccccEE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRA 289 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~~~~~aDrI 289 (397)
.+++- +||||+ ++||..... .+..++.. ...+|--||.+||..+--...++
T Consensus 148 ~~pLW--------iLDEP~--taLDk~g~a------~l~~l~~~---H~~~GGiVllttHq~l~~~~a~~ 198 (209)
T COG4133 148 PAPLW--------ILDEPF--TALDKEGVA------LLTALMAA---HAAQGGIVLLTTHQPLPIASAQI 198 (209)
T ss_pred CCCce--------eecCcc--cccCHHHHH------HHHHHHHH---HhcCCCEEEEecCCccCCCccce
Confidence 99999 555555 778854332 33333311 12467779999996443333333
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=229.95 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=124.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-----cccCCCCCCCcccE-----------EEECce------e---Cc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERAQ-----------VTYNSS------V---GD 147 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-----Gl~~~~~~~p~~G~-----------I~i~G~------~---~~ 147 (397)
|+|||++|+.|.+++|.|+||||||||++.+. ..+......|..++ |.++.. + ..
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 99999999999999999999999999999662 11110000022222 333332 0 01
Q ss_pred EEEEec---------------------------CCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--ccc
Q 015952 148 GTYFLQ---------------------------EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVI 198 (397)
Q Consensus 148 ig~v~Q---------------------------~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~ 198 (397)
...+|| +.... ..+|+.|++.|..... . ..++.++++.+||++ ...
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v---~~ltv~e~~~~~~~~~-~-~~~~~~~L~~vgL~~l~l~~ 165 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV---LDMTVEEALEFFENIP-K-IARKLQTLCDVGLGYIKLGQ 165 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHH---hcCCHHHHHHHHHhhh-h-HHHHHHHHHHcCCchhhhcC
Confidence 112222 11111 2467777766643311 1 235667899999965 467
Q ss_pred CCCCCChHHHHHHHHHHHHcCC---CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEE
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCE---PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVV 275 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~---P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVI 275 (397)
++.+|||||+||++|||||+.+ |+++ +||||| ++||+.... ...+.+.++ .+.|.|||
T Consensus 166 ~~~~LSgGe~QRl~LAraL~~~~~~p~ll--------lLDEPt--sgLD~~~~~--~l~~~L~~l-------~~~g~tvI 226 (261)
T cd03271 166 PATTLSGGEAQRIKLAKELSKRSTGKTLY--------ILDEPT--TGLHFHDVK--KLLEVLQRL-------VDKGNTVV 226 (261)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCcEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEE
Confidence 7889999999999999999996 7999 555556 777744332 233444333 24689999
Q ss_pred EEech-hHHccccEEEEEe------eCCEEeeeCCc
Q 015952 276 VVTHG-DLLSLTDRARIRT------YLGELLGIPPA 304 (397)
Q Consensus 276 ivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~ 304 (397)
++||+ ...+.||++ +.| ++|+|++.|++
T Consensus 227 iitH~~~~i~~aD~i-i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIKCADWI-IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHHhCCEE-EEecCCcCCCCCEEEEeCCC
Confidence 99995 445689999 579 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=244.45 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=166.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccc------ccccC-C---------CCeEEEEeEEEEECCCceEeeccCceeeeEEEc
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYD------QLRTR-I---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVP 101 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~---------~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~ 101 (397)
+.....+++.++...|+.+..+.-+ +.... . ...+.++|++..-+.+... |++.||+|+
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~l-----l~~l~~~v~ 417 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL-----LSELNFEVR 417 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCee-----eccceeeeC
Confidence 3445566777777777777664322 11111 1 4789999999999877645 999999999
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHH
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN 181 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~ 181 (397)
+|+-+.|.||||||||||+|+|+|+.+ .-+|+|.+- ....+-|+||.|.++. + |.+|-+.++.....-..
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P-~~~~~lflpQ~PY~p~---G-tLre~l~YP~~~~~~~d 487 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMP-ADSALLFLPQRPYLPQ---G-TLREALCYPNAAPDFSD 487 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecC-CCCceEEecCCCCCCC---c-cHHHHHhCCCCCCCCCh
Confidence 999999999999999999999999999 889999886 3456899999999987 3 99999999876433445
Q ss_pred HHHHHHHHHCCCcccccC-------CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHH
Q 015952 182 MIKLWIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (397)
Q Consensus 182 ~~~~~ll~~vgl~~~~~~-------~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~ 254 (397)
+.+.++|..+||+++..+ -..||+|||||+|+||.|+++|+++ +|||.| ++||+.++. ...
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v--------~LDEAT--sALDe~~e~--~l~ 555 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV--------FLDEAT--SALDEETED--RLY 555 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE--------EEecch--hccChHHHH--HHH
Confidence 567789999999655332 3456999999999999999999999 666667 777755443 344
Q ss_pred HHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 255 QIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 255 ~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
+.+++. ..+.|||-|.|+ .+..+.++.
T Consensus 556 q~l~~~--------lp~~tvISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 556 QLLKEE--------LPDATVISVGHRPTLWNFHSRQ 583 (604)
T ss_pred HHHHhh--------CCCCEEEEeccchhhHHHHhhh
Confidence 444332 378999999995 777777776
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=220.31 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=113.3
Q ss_pred c-eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCC----CCCcccEEEECce-------eCcEEEEecCCCCCCC
Q 015952 93 M-TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----FASERAQVTYNSS-------VGDGTYFLQEYTIPRG 160 (397)
Q Consensus 93 L-~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~----~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~~ 160 (397)
+ +++++++++| +++|+||||||||||+++|+|+..+.. -.+..|++.++|. .+.+||+||++..+.
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~- 89 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY- 89 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce-
Confidence 5 6689999999 999999999999999999999986110 0123456777765 257999999987651
Q ss_pred CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCeEeeccccccccch
Q 015952 161 SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDG 236 (397)
Q Consensus 161 ~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDE 236 (397)
+... ..++.++++. -+.....+.+||||||||++|||+|+ .+|+++ +|||
T Consensus 90 ------------~~~~----~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~il--------llDE 143 (197)
T cd03278 90 ------------SIIS----QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFC--------VLDE 143 (197)
T ss_pred ------------eEEe----hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEE--------EEeC
Confidence 1101 2345566666 23345668899999999999999997 467999 5555
Q ss_pred hhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee
Q 015952 237 LAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 237 pT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
|| ++||+.... ...+.+.++ .++.|||++||+ ...++||+++ .+.
T Consensus 144 P~--~~LD~~~~~--~l~~~l~~~--------~~~~tiIiitH~~~~~~~~d~v~-~~~ 189 (197)
T cd03278 144 VD--AALDDANVE--RFARLLKEF--------SKETQFIVITHRKGTMEAADRLY-GVT 189 (197)
T ss_pred Cc--ccCCHHHHH--HHHHHHHHh--------ccCCEEEEEECCHHHHhhcceEE-EEE
Confidence 55 677754333 233444332 236899999995 5567899995 454
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=218.39 Aligned_cols=231 Identities=13% Similarity=0.206 Sum_probs=174.6
Q ss_pred CCeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
|+++.++|++..+.. ..++++ ++++|+++++||+-+|||+||||||-..|.|+|..+++ +..+.-+..+++.
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~---VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL 76 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKA---VDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLL 76 (330)
T ss_pred CCcccccceEEEEecCCCceEe---eeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhh
Confidence 578999999999943 233555 88899999999999999999999999999999998833 4445566666665
Q ss_pred -----------eCcEEEEecCCCC--CC-CCCCccHHHHHhcCCC------ChhhHHHHHHHHHHHCCC-cc---cccCC
Q 015952 145 -----------VGDGTYFLQEYTI--PR-GSNSFSLYDTRSLSDD------ASDNINMIKLWIMEGVRH-GE---LVIRR 200 (397)
Q Consensus 145 -----------~~~ig~v~Q~~~l--~~-~~~~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl-~~---~~~~~ 200 (397)
.+.|+++||+|.- .+ ..++..+.+|+-+.-. .....+.++-++|.+||+ ++ ...+|
T Consensus 77 ~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP 156 (330)
T COG4170 77 RLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP 156 (330)
T ss_pred cCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence 2578999999853 22 1123344445432211 123456778899999999 44 36789
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
+++.-|+-|+|.||.|++.+|++| +.|||| +++++.+.. +..+.+.++ ...+|.||++++||
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLL--------IADEPT--N~~e~~Tq~--QifRLLs~m------NQn~~TtILL~s~D 218 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLL--------IADEPT--NSMEPTTQA--QIFRLLSRL------NQNSNTTILLISHD 218 (330)
T ss_pred chhccCcceeeeeehhhccCCceE--------eccCCC--cccCccHHH--HHHHHHHHh------hccCCceEEEEccc
Confidence 999999999999999999999999 666667 777776654 344444433 23479999999997
Q ss_pred --hHHccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHHHHH
Q 015952 281 --DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (397)
Q Consensus 281 --~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i~~ 324 (397)
.+.+.||+|. +|..|+-++.++.+++...|.++ .+...+..
T Consensus 219 l~~is~W~d~i~-VlYCGQ~~ESa~~e~l~~~PhHP--YTqALi~a 261 (330)
T COG4170 219 LQMISQWADKIN-VLYCGQTVESAPSEELVTMPHHP--YTQALIRA 261 (330)
T ss_pred HHHHHHHhhheE-EEEecccccccchhHHhcCCCCc--hHHHHHHh
Confidence 8899999996 59999999999999999999865 45544433
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=252.22 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=92.8
Q ss_pred ccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccccccchhh
Q 015952 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVIFVVDGLA 238 (397)
Q Consensus 164 ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~siLDEpT 238 (397)
+|+.|++.|..... .. ....++++.+||++ ...++.+|||||+||++|||+|+.+| +++ +|||||
T Consensus 792 ltv~E~l~~f~~~~-~i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~ll--------ILDEPt 861 (943)
T PRK00349 792 MTVEEALEFFEAIP-KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY--------ILDEPT 861 (943)
T ss_pred CcHHHHHHHHHhch-hh-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEE--------EEECCC
Confidence 56667666643211 12 23457899999965 46678899999999999999999999 999 555555
Q ss_pred hhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCC
Q 015952 239 VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 239 ~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~ 311 (397)
++||..... ..++.+.++ .+.|.|||+|||+ .....||+| +.| ++|++++.|++++++..+
T Consensus 862 --sGLD~~~~~--~L~~~L~~l-------~~~G~TVIiitH~~~~i~~aD~i-i~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 862 --TGLHFEDIR--KLLEVLHRL-------VDKGNTVVVIEHNLDVIKTADWI-IDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred --CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCHHHHHhCCEE-EEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 677744332 334444433 2468999999995 455689999 579 799999999999998776
Q ss_pred C
Q 015952 312 E 312 (397)
Q Consensus 312 ~ 312 (397)
.
T Consensus 930 ~ 930 (943)
T PRK00349 930 A 930 (943)
T ss_pred c
Confidence 5
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=227.12 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=194.5
Q ss_pred CCCcCCCCCCcchhhhhHHHHHHHHHH-------HHHHHHHhc---ccccccc---------------------------
Q 015952 24 DFDIPLLSGDDEGSRDSWDSLVDQRRR-------DAVFREVLQ---SYDQLRT--------------------------- 66 (397)
Q Consensus 24 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~--------------------------- 66 (397)
=|||||+-|-|..+-.++..+.++++. ..++.|++. +...++.
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v 242 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREV 242 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCcc
Confidence 389999999999999999999988875 223444433 2111100
Q ss_pred ----------CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc
Q 015952 67 ----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (397)
Q Consensus 67 ----------~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~ 136 (397)
...+.++++|++..-..+. .. +++|||+|++||+++|.|-.|-|-+.|+.+|+|+.+ |.+
T Consensus 243 ~~~~~~~~~~pg~~vL~V~~L~v~~~~~~--~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~ 312 (501)
T COG3845 243 VLRVVKPPSTPGEVVLEVEDLSVKDRRGV--TA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PAS 312 (501)
T ss_pred ccccccCCCCCCCeEEEEeeeEeecCCCC--ce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCC
Confidence 1346899999998764332 33 999999999999999999999999999999999998 889
Q ss_pred cEEEECcee------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----------ChhhHHHHHHHHHHHCCC
Q 015952 137 AQVTYNSSV------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----------ASDNINMIKLWIMEGVRH 193 (397)
Q Consensus 137 G~I~i~G~~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----------~~~~~~~~~~~ll~~vgl 193 (397)
|+|.++|+. ..+||||.+..=...-..+++.||+.+... .....+..+.++++.+..
T Consensus 313 G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdV 392 (501)
T COG3845 313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392 (501)
T ss_pred ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCc
Confidence 999999974 378999998632222236899999987643 235667888999999998
Q ss_pred c--ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 194 G--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 194 ~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
. ....+...||||.+||+-+||-|..+|++| ++..|| .+||....+ ...+.+.+. ...|
T Consensus 393 r~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lL--------I~~qPT--rGLDvgA~~--~I~~~l~e~-------r~~G 453 (501)
T COG3845 393 RAPSPDAPARSLSGGNQQKLILARELARRPDLL--------IAAQPT--RGLDVGAIE--FIHERLLEL-------RDAG 453 (501)
T ss_pred cCCCCCcchhhcCCcceehhhhhhhhccCCCEE--------EEcCCC--ccccHHHHH--HHHHHHHHH-------HhcC
Confidence 3 234446788999999999999999999999 777778 677744332 122222222 3589
Q ss_pred ceEEEEec--hhHHccccEEEEEeeCCEEeeeCCccc
Q 015952 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (397)
Q Consensus 272 ~TVIivTH--~~~~~~aDrI~v~l~~G~iv~~g~~~e 306 (397)
++|++|+- |++..+||||+ +|++|+++...++++
T Consensus 454 ~AVLLiS~dLDEil~lsDrIa-Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 454 KAVLLISEDLDEILELSDRIA-VIYEGRIVGIVPPEE 489 (501)
T ss_pred CEEEEEehhHHHHHHhhheee-eeeCCceeccccccc
Confidence 99999999 59999999996 599999998877754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=257.65 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=132.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHH---------HHHcccCCCC-------------------CCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVN---------RISKVFENDK-------------------FASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~---------~I~Gl~~~~~-------------------~~p~~G~I~i~G~ 144 (397)
|+++||+|++||+++|+|+||||||||++ .+.|...+.. -.|-++.+++-|.
T Consensus 611 Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~ 690 (1809)
T PRK00635 611 LKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKA 690 (1809)
T ss_pred ccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhh
Confidence 99999999999999999999999999999 5555432100 0122234443332
Q ss_pred ----e--------------CcEEEEecC------------------CCCC-----------------CCCCCccHHHHHh
Q 015952 145 ----V--------------GDGTYFLQE------------------YTIP-----------------RGSNSFSLYDTRS 171 (397)
Q Consensus 145 ----~--------------~~ig~v~Q~------------------~~l~-----------------~~~~~ltv~eni~ 171 (397)
+ ....|.|+. +... ......||.|++.
T Consensus 691 fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~ 770 (1809)
T PRK00635 691 FDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILE 770 (1809)
T ss_pred hHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHH
Confidence 0 011222332 0000 0112568888888
Q ss_pred cCCC-------ChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHc---CCCCeEeeccccccccchhhh
Q 015952 172 LSDD-------ASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIG---CEPSVIRKVNFVIFVVDGLAV 239 (397)
Q Consensus 172 ~~~~-------~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~---~~P~iLllDEP~~siLDEpT~ 239 (397)
++.. ...+..+++ ++++.+|+++ ....+.+|||||+||++|||||+ .+|+++ +|||||
T Consensus 771 mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LL--------ILDEPT- 840 (1809)
T PRK00635 771 MTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLY--------VLDEPT- 840 (1809)
T ss_pred cCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEE--------EEeCCC-
Confidence 7643 123445555 5789999965 36678899999999999999997 699999 555556
Q ss_pred hccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee------CCEEeeeCCcccccC
Q 015952 240 LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY------LGELLGIPPAKQIFD 309 (397)
Q Consensus 240 ~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~------~G~iv~~g~~~el~~ 309 (397)
++||..... ..++.+.++ .+.|.|||+|||+ +..++||++ ++|. +|+++..|+++++..
T Consensus 841 -sGLD~~~~~--~Ll~lL~~L-------~~~G~TVIiIsHdl~~i~~aDrV-i~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 841 -TGLHTHDIK--ALIYVLQSL-------THQGHTVVIIEHNMHVVKVADYV-LELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred -CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHHhCCEE-EEEccCCCCCCCEEEEeCCHHHHHh
Confidence 677744333 334444433 2469999999995 444899999 5695 799999999999875
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-26 Score=226.89 Aligned_cols=230 Identities=11% Similarity=0.114 Sum_probs=159.9
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHhcccccccc---C---CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEE
Q 015952 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRT---R---IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106 (397)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~v 106 (397)
|-.+..+.+-.+..++.+++++.++-..+....- . .-.-||++||.|.|...... +.-||++|++||++
T Consensus 278 pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~Fh-----vgPiNl~ikrGelv 352 (546)
T COG4615 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFH-----VGPINLTIKRGELV 352 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCcccce-----ecceeeEEecCcEE
Confidence 4455666666777788888888887543332111 1 12358999999999755433 77799999999999
Q ss_pred EEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 107 aLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
-|+|.||||||||++++.||++ |++|+|.+||+ |+-++-||-++.+|+ +.+ +...
T Consensus 353 FliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~-----~ll-----~~e~ 417 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFD-----QLL-----GPEG 417 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhH-----hhh-----CCcc
Confidence 9999999999999999999999 99999999998 233455666666654 111 1111
Q ss_pred hhhHHHHHHHHHHHCCCcc------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 177 SDNINMIKLWIMEGVRHGE------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~~------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
. ...+.++..|+++.+.+ ..-.+..||-|||+|+|+--||+-+-+|+++||= . + |.+
T Consensus 418 ~-as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW--------A--A------DQD 480 (546)
T COG4615 418 K-ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW--------A--A------DQD 480 (546)
T ss_pred C-CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh--------h--c------cCC
Confidence 1 11234445555555522 2223566799999999999999999999944444 3 1 223
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeC
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g 302 (397)
+.+++..-..+.- .-++.||||+.|||| .-...|||+ +.|.+|++++..
T Consensus 481 PaFRR~FY~~lLp--~LK~qGKTI~aIsHDd~YF~~ADrl-l~~~~G~~~e~t 530 (546)
T COG4615 481 PAFRREFYQVLLP--LLKEQGKTIFAISHDDHYFIHADRL-LEMRNGQLSELT 530 (546)
T ss_pred hHHHHHHHHHHhH--HHHHhCCeEEEEecCchhhhhHHHH-HHHhcCceeecc
Confidence 4444444333211 114689999999996 667889999 689999998853
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-26 Score=216.11 Aligned_cols=163 Identities=10% Similarity=0.096 Sum_probs=117.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECce-------------eCcEEEEecCCCCC------CCCC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-------------VGDGTYFLQEYTIP------RGSN 162 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~-------------~~~ig~v~Q~~~l~------~~~~ 162 (397)
..+++||||||||||||+++|++++. ++ .|++.+.|. ...++++||++... ...+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~ 99 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP 99 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence 45999999999999999999999998 65 356666553 23789999986321 1112
Q ss_pred CccHHHHHhcCCC------ChhhHHHHHHHHHHHCCCc--c-------------------cccCCCCCChHHHHHHHHHH
Q 015952 163 SFSLYDTRSLSDD------ASDNINMIKLWIMEGVRHG--E-------------------LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 163 ~ltv~eni~~~~~------~~~~~~~~~~~ll~~vgl~--~-------------------~~~~~~~lSGGqkQRvaIAr 215 (397)
.++|.+++..+.. ......+.+.++++.+++. . ...++.++|||||||++|||
T Consensus 100 ~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~ 179 (251)
T cd03273 100 EITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSL 179 (251)
T ss_pred eEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHH
Confidence 5788888766532 1223456788899999984 1 13568899999999999999
Q ss_pred HHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEE
Q 015952 216 KIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRAR 290 (397)
Q Consensus 216 AL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~ 290 (397)
||+ .+|+++ ++|||| ++||..... ...+.+.++ .+|.|||++||+ ++.+.||+++
T Consensus 180 al~~~~~~~~~il--------llDEPt--~~ld~~~~~--~~~~~l~~~--------~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 180 ILALLLFKPAPMY--------ILDEVD--AALDLSHTQ--NIGRMIKTH--------FKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred HHHHhhccCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH--------cCCCEEEEEECCHHHHHhCCEEE
Confidence 998 578999 555555 666643332 233333332 358899999994 8888899994
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-25 Score=213.83 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=106.4
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCC-----------CCCCCccc---
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN-----------DKFASERA--- 137 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~-----------~~~~p~~G--- 137 (397)
++++|. ++|++.. + +++++ |++++|+||||||||||+++|++++.. +...+.+|
T Consensus 4 i~~~nf-ksy~~~~-~-----~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~ 71 (243)
T cd03272 4 VIIQGF-KSYKDQT-V-----IEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV 71 (243)
T ss_pred EEEeCc-cCcccCc-c-----cccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC
Confidence 566666 5675322 3 66665 789999999999999999999855420 00113344
Q ss_pred -----EEEECce-------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHH--HHHHHHHHHCCC-
Q 015952 138 -----QVTYNSS-------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNIN--MIKLWIMEGVRH- 193 (397)
Q Consensus 138 -----~I~i~G~-------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~--~~~~~ll~~vgl- 193 (397)
+|.+++. ++.+|+++|++.++.. ..+..+...+... ...+.. ....++.+.+++
T Consensus 72 ~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~--~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~ 149 (243)
T cd03272 72 MSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK--NVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMK 149 (243)
T ss_pred ceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe--EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcc
Confidence 3333331 1235555555444321 1233322211100 000000 000111222233
Q ss_pred cccccCCCCCChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 194 GELVIRRSDSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 194 ~~~~~~~~~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
.....++..+|||||||++|||||+ .+|+++ ++|||| ++||+.... ...+.+.++ .
T Consensus 150 ~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~il--------llDEp~--~~ld~~~~~--~~~~~l~~~--------~ 209 (243)
T cd03272 150 QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY--------LFDEID--AALDAQYRT--AVANMIKEL--------S 209 (243)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhccCCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH--------h
Confidence 2234567889999999999999997 358999 555556 677754433 233333332 2
Q ss_pred CCceEEEEech-hHHccccEEEEEee
Q 015952 270 DDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 270 ~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
+++|+|++||+ ++.++||+++ +|.
T Consensus 210 ~~~~ii~~~h~~~~~~~~d~i~-~l~ 234 (243)
T cd03272 210 DGAQFITTTFRPELLEVADKFY-GVK 234 (243)
T ss_pred CCCEEEEEecCHHHHhhCCEEE-EEE
Confidence 37889999994 8889999995 454
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-25 Score=205.56 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=116.4
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEc-CCcEEEEECCCCCcHHHHHHHHHc-ccCCCCCCCcccEEEECce----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~-~Ge~vaLvGpnGsGKSTLl~~I~G-l~~~~~~~p~~G~I~i~G~---- 144 (397)
.|+++|+. +|... ++++|+.. +|++++|+||||||||||+++|++ |+. +..+....+..
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~~~~~~ 69 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQENLRSVF 69 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----CccccccchhHHHHh
Confidence 47889987 76422 23566544 589999999999999999999996 444 44444443211
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
...|+++||..... +++.... +. ..+...+.+ .+...++. ....++..+||||+||++|||||+
T Consensus 70 ~~~~~~~~v~~~f~~~~~~-----~~~~r~~--gl-~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 70 APGEDTAEVSFTFQLGGKK-----YRVERSR--GL-DYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred cCCCccEEEEEEEEECCeE-----EEEEEec--CC-CHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 35689999987432 2222221 11 112111111 23444442 335667889999999999999998
Q ss_pred C----------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 219 C----------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 219 ~----------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
. +|+++++||| | ++||+.... ...+.+.++ .++++|||+|||+ .+..+|
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp--------~--~~lD~~~~~--~~~~~l~~~-------~~~~~tii~itH~~~~~~~~~ 200 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEG--------F--GTLDPEALE--AVATALELI-------RTENRMVGVISHVEELKERIP 200 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCC--------c--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEECchHHHHhhC
Confidence 5 5789955555 5 666644333 223333332 2358899999994 788999
Q ss_pred cEEEEEeeCCE
Q 015952 287 DRARIRTYLGE 297 (397)
Q Consensus 287 DrI~v~l~~G~ 297 (397)
|++ +++++|.
T Consensus 201 ~~i-~~~~~~~ 210 (213)
T cd03279 201 QRL-EVIKTPG 210 (213)
T ss_pred cEE-EEEecCC
Confidence 999 4688875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=237.99 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=79.2
Q ss_pred HHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcC---CCCeEeeccccccccchhhhhccccccchhhhHHHHHHH
Q 015952 184 KLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGC---EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 258 (397)
Q Consensus 184 ~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~---~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~ 258 (397)
..++++.+||++ ......+|||||+||++||++|+. +|+++ +||||| ++||..... ...+.+.
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~ll--------ILDEPt--sgLD~~~~~--~L~~~L~ 875 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLY--------ILDEPT--TGLHFDDIK--KLLEVLQ 875 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHH
Confidence 456888999965 466778999999999999999997 59999 555556 777754333 3344444
Q ss_pred HhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccc
Q 015952 259 TTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQI 307 (397)
Q Consensus 259 ~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el 307 (397)
++ .++|.|||++||+ ...+.||++ +.| ++|+++..|+++++
T Consensus 876 ~l-------~~~G~TVIvi~H~~~~i~~aD~i-i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 876 RL-------VDQGNTVVVIEHNLDVIKTADYI-IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HH-------HhCCCEEEEEeCCHHHHHhCCEE-EEecCCccCCCCEEEEeCCHHHh
Confidence 33 2468999999995 455789999 579 79999999998765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-26 Score=202.81 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=153.9
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
-+++++||+.+-. |--+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.
T Consensus 2 ~l~qln~v~~~tR----------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~l~~~ 65 (248)
T COG4138 2 ILMQLNDVAESTR----------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQPLEAW 65 (248)
T ss_pred ceeeecccccccc----------ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcchhHH
Confidence 3678899886542 55689999999999999999999999999999988 58999999998
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
.++-+|+.|+..-+. .|.|+..+.+... .......+.++...+++++ +.+..++||||+-|||-+|-..+
T Consensus 66 ~~~eLArhRAYLsQqq~p~f---~mpV~~YL~L~qP-~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~L 141 (248)
T COG4138 66 SATELARHRAYLSQQQTPPF---AMPVWHYLTLHQP-DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 141 (248)
T ss_pred hHhHHHHHHHHHhhccCCcc---hhhhhhhhhhcCc-hHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEE
Confidence 255688888755443 5789999888654 3445556777888899954 56668899999999999997765
Q ss_pred C-----C--CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 219 C-----E--PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 219 ~-----~--P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
. | .++||+||| . +.||...+ ..++.+...+ ...|.+|||.+|| ...+.||++
T Consensus 142 Qv~Pd~NP~~~LLllDEP--------~--~~LDvAQ~---~aLdrll~~~------c~~G~~vims~HDLNhTLrhA~~~ 202 (248)
T COG4138 142 QITPDANPAGQLLLLDEP--------M--NSLDVAQQ---SALDRLLSAL------CQQGLAIVMSSHDLNHTLRHAHRA 202 (248)
T ss_pred EecCCCCccceeEEecCC--------C--cchhHHHH---HHHHHHHHHH------HhCCcEEEEeccchhhHHHHHHHH
Confidence 4 3 348855555 3 56663211 2233332221 2579999999996 899999999
Q ss_pred EEEeeCCEEeeeCCcccccCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~ 310 (397)
..++.|++...|..+|++..
T Consensus 203 -wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 203 -WLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred -HHHhcCeEEeecchhhhcCh
Confidence 56999999999999998754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=211.83 Aligned_cols=163 Identities=14% Similarity=0.143 Sum_probs=122.0
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 177 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~ 177 (397)
=+|..||+++++||||-||||++++|+|.++ |++|. ...-+++|-||--.-.. ..||.+.+.-.....
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~vSyKPQyI~~~~---~gtV~~~l~~~~~~~ 429 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLKVSYKPQYISPDY---DGTVEDLLRSAIRSA 429 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----CccceEeecceeecCCC---CCcHHHHHHHhhhhh
Confidence 3566788999999999999999999999999 99998 33557999999643222 469988775543321
Q ss_pred hhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 178 DNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 178 ~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
-.......++.+-++|+.. .+...+||||+.||||||-||.+++++. +||||+ +.||...+. ...+.
T Consensus 430 ~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY--------llDEPS--A~LDvEqR~--~vakv 497 (591)
T COG1245 430 FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY--------LLDEPS--AYLDVEQRI--IVAKV 497 (591)
T ss_pred cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE--------EecCch--hhccHHHHH--HHHHH
Confidence 1222345578888888654 5567889999999999999999999999 666666 778854433 33455
Q ss_pred HHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|++.. ...++|.++|.|| .+-.++||++
T Consensus 498 IRR~~------e~~~kta~vVdHDi~~~dyvsDr~i 527 (591)
T COG1245 498 IRRFI------ENNEKTALVVDHDIYMIDYVSDRLI 527 (591)
T ss_pred HHHHH------hhcCceEEEEecceehhhhhhceEE
Confidence 55443 2468899999998 6667889993
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=221.75 Aligned_cols=196 Identities=16% Similarity=0.142 Sum_probs=144.8
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
|.+.++||+|.|.++..+ +++++|-|..++.+++|||||||||||||++.|.+. |+.|.|.-.- -..++
T Consensus 388 pvi~~~nv~F~y~~~~~i-----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~-H~~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMI-----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHS-HNKLP 456 (614)
T ss_pred CeEEEeccccCCCCcchh-----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccc-cccch
Confidence 688899999999766545 999999999999999999999999999999999999 9999997543 22345
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-ccc-ccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
+.-|...-- ...+.+..+++.-... .....+.+..++.++|| +.. .....+||+|||.||++||.++..|.+|
T Consensus 457 ~y~Qh~~e~-ldl~~s~le~~~~~~~-~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL--- 531 (614)
T KOG0927|consen 457 RYNQHLAEQ-LDLDKSSLEFMMPKFP-DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL--- 531 (614)
T ss_pred hhhhhhHhh-cCcchhHHHHHHHhcc-ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE---
Confidence 444542110 0113566776643222 23445667789999999 444 4456778999999999999999999999
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeee
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~ 301 (397)
+||||| +.||.. .++.+.+.++ +-.-+||+|||| .+..+|++|. +..+|.+..+
T Consensus 532 -----lLDEPt--nhLDi~------tid~laeaiN------e~~Ggvv~vSHDfrlI~qVaeEi~-~c~~~~~~~~ 587 (614)
T KOG0927|consen 532 -----LLDEPT--NHLDIE------TIDALAEAIN------EFPGGVVLVSHDFRLISQVAEEIW-VCENGTVTKW 587 (614)
T ss_pred -----EecCCC--cCCCch------hHHHHHHHHh------ccCCceeeeechhhHHHHHHHHhH-hhccCceeec
Confidence 556666 666633 3455555541 223479999996 8899999995 5777766543
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-25 Score=207.28 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=118.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~ 150 (397)
-|+++|.. +|+ +..+ ++++++ ++++|+||||||||||+++|..++- .+.... ..+++++
T Consensus 5 ~l~l~nfk-~~~-~~~~-----l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G-----~~~~~~----~~~~i~~ 63 (212)
T cd03274 5 KLVLENFK-SYA-GEQV-----IGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG-----FRASKM----RQKKLSD 63 (212)
T ss_pred EEEEECcc-cCC-CCee-----eccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc-----cCHHHh----hhhhHHH
Confidence 36788885 785 3324 888887 7999999999999999999984433 111000 1246888
Q ss_pred EecCCCCCCCCCCccHHHHHhcCCCC------------hhhHHH--HHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 151 FLQEYTIPRGSNSFSLYDTRSLSDDA------------SDNINM--IKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 151 v~Q~~~l~~~~~~ltv~eni~~~~~~------------~~~~~~--~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++|+..+++ .+++.++..+.... .++... ...++++.+++. ....++..+|+|||||++|||
T Consensus 64 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~ 140 (212)
T cd03274 64 LIHNSAGHP---NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL 140 (212)
T ss_pred HhcCCCCCC---CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence 888876655 45666655443321 001000 124556677773 345567889999999999999
Q ss_pred HHcC----CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEE
Q 015952 216 KIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRAR 290 (397)
Q Consensus 216 AL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~ 290 (397)
|++. +|+++ ++|||| ++||+.... ...+.+.+ ..++.|+|++||+ ++.++|||+
T Consensus 141 al~~~~~~~p~il--------ilDEPt--~gLD~~~~~--~l~~~l~~--------~~~~~~~iivs~~~~~~~~~d~v- 199 (212)
T cd03274 141 VFALHHYKPTPLY--------VMDEID--AALDFRNVS--IVANYIKE--------RTKNAQFIVISLRNNMFELADRL- 199 (212)
T ss_pred HHHhcccCCCCEE--------EEcCCC--cCCCHHHHH--HHHHHHHH--------HcCCCEEEEEECcHHHHHhCCEE-
Confidence 9974 47999 555556 667654333 23333333 2356789999994 889999999
Q ss_pred EEeeC
Q 015952 291 IRTYL 295 (397)
Q Consensus 291 v~l~~ 295 (397)
++|..
T Consensus 200 ~~~~~ 204 (212)
T cd03274 200 VGIYK 204 (212)
T ss_pred EEEEe
Confidence 45653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=197.48 Aligned_cols=161 Identities=12% Similarity=0.205 Sum_probs=108.4
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHH----cccCCCCCCCcccEEEECc-------eeCcEEEEecCCCCCCC--CC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNS-------SVGDGTYFLQEYTIPRG--SN 162 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~----Gl~~~~~~~p~~G~I~i~G-------~~~~ig~v~Q~~~l~~~--~~ 162 (397)
.++++.+| +++|+||||||||||+++|. |... |++|.+..+. ....++++||++.-... .-
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEE
Confidence 34566777 99999999999999999995 8887 7777654221 14579999998731100 11
Q ss_pred CccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHH------HHHHHHHcCCCCeEeeccccccccch
Q 015952 163 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRM------RCKAHKIGCEPSVIRKVNFVIFVVDG 236 (397)
Q Consensus 163 ~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQR------vaIArAL~~~P~iLllDEP~~siLDE 236 (397)
.+++++|+.+.. .. .+.+.+ .+.+.++|+||+|| ++||||++.+|+++++|||
T Consensus 90 ~~~~~~~~~~~~--~~----~~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP------- 148 (204)
T cd03240 90 SLAILENVIFCH--QG----ESNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP------- 148 (204)
T ss_pred EhhHhhceeeec--hH----HHHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC-------
Confidence 358899987642 11 122232 45578999999996 7899999999999955555
Q ss_pred hhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee
Q 015952 237 LAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 237 pT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
+ +.||+.... ....+.+.++. .+.|.|||++||+ +....||+++ .|.
T Consensus 149 -~--~~LD~~~~~-~~l~~~l~~~~------~~~~~~iiiitH~~~~~~~~d~i~-~l~ 196 (204)
T cd03240 149 -T--TNLDEENIE-ESLAEIIEERK------SQKNFQLIVITHDEELVDAADHIY-RVE 196 (204)
T ss_pred -c--cccCHHHHH-HHHHHHHHHHH------hccCCEEEEEEecHHHHhhCCEEE-EEe
Confidence 4 666643211 02333343321 1237899999995 5567899995 454
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=207.50 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=147.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--C
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--G 146 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--~ 146 (397)
..++++++|++.-++++.+ . ++|+||+|++|+.+.|.||||||||+|+|.++||.+ ..+|.+..-... +
T Consensus 431 Dn~i~~e~v~l~tPt~g~~-l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~~ 501 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDL-L---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGPK 501 (659)
T ss_pred cceEEeeeeeecCCCCCce-e---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCCC
Confidence 3689999999998763322 2 788999999999999999999999999999999999 899999887664 7
Q ss_pred cEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcccc------------cCCCCCChHHHH
Q 015952 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGELV------------IRRSDSSSLRNR 209 (397)
Q Consensus 147 ~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~~~------------~~~~~lSGGqkQ 209 (397)
.+-|+||.|.... + |++|-+.++.. .+....+.+.+.|+.++|++.. +....||+||||
T Consensus 502 ~lfflPQrPYmt~---G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 502 DLFFLPQRPYMTL---G-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred ceEEecCCCCccc---c-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 7999999998765 2 99999999854 2222234566677777664432 223456999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccE
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDR 288 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDr 288 (397)
|+|+||-+.++|++- +|||-| |+++...+. ...+.. .+.|.|.|-|.|+ .+.++-|.
T Consensus 578 RLa~ARLfy~kPk~A--------iLDE~T--SAv~~dvE~--~~Yr~~----------r~~giT~iSVgHRkSL~kfHd~ 635 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFA--------ILDECT--SAVTEDVEG--ALYRKC----------REMGITFISVGHRKSLWKFHDY 635 (659)
T ss_pred HHHHHHHHhcCCceE--------Eeechh--hhccHHHHH--HHHHHH----------HHcCCeEEEeccHHHHHhhhhE
Confidence 999999999999999 666667 777744433 223333 2469999999996 88888888
Q ss_pred EEEEeeC
Q 015952 289 ARIRTYL 295 (397)
Q Consensus 289 I~v~l~~ 295 (397)
+ +.|+.
T Consensus 636 ~-L~~~g 641 (659)
T KOG0060|consen 636 V-LRMDG 641 (659)
T ss_pred E-EEecC
Confidence 8 56654
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-23 Score=195.86 Aligned_cols=189 Identities=14% Similarity=0.029 Sum_probs=113.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
-++++|. ++|.+ . .++++.++ +++|+||||||||||+.+|++++. +..|.+...+.
T Consensus 3 ~i~l~nf-~~~~~-~----------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~r~~~~~~~i~~ 64 (247)
T cd03275 3 RLELENF-KSYKG-R----------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-----EKSSHLRSKNLKDLIYR 64 (247)
T ss_pred EEEEECc-cccCC-C----------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-----CCcccccccchhhhccc
Confidence 3677776 66732 1 12333444 999999999999999999999998 76666654321
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHH-hcCCCChhhHHHHHHHHHHHCCCccc---------------c--
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGEL---------------V-- 197 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni-~~~~~~~~~~~~~~~~ll~~vgl~~~---------------~-- 197 (397)
...+..+|+...-.......++.+.. .+...........+.++++.+|+... .
T Consensus 65 ~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~ 144 (247)
T cd03275 65 ARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKN 144 (247)
T ss_pred CccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhcc
Confidence 12344445432110000011222211 11111111223345678888888311 1
Q ss_pred ------cCCCCCChHHHHHHHHHHHHcCC----CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc
Q 015952 198 ------IRRSDSSSLRNRMRCKAHKIGCE----PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS 267 (397)
Q Consensus 198 ------~~~~~lSGGqkQRvaIArAL~~~----P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~ 267 (397)
.++.++|+|||||++||||++.+ |+++ ++|||| ++||..... ...+.+.++
T Consensus 145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~l--------llDEPt--~~LD~~~~~--~l~~~i~~~------- 205 (247)
T cd03275 145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFF--------VLDEVD--AALDNTNVG--KVASYIREQ------- 205 (247)
T ss_pred CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEE--------EEeccc--ccCCHHHHH--HHHHHHHHh-------
Confidence 12377899999999999999865 8999 555555 677744332 233444332
Q ss_pred ccCCceEEEEech-hHHccccEEEEEeeCC
Q 015952 268 FRDDKPVVVVTHG-DLLSLTDRARIRTYLG 296 (397)
Q Consensus 268 ~~~g~TVIivTH~-~~~~~aDrI~v~l~~G 296 (397)
.++|.|||+|||+ .+..+|||++++.+++
T Consensus 206 ~~~g~~vi~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 206 AGPNFQFIVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred ccCCcEEEEEECCHHHHhhCCeEEEEEecC
Confidence 2358999999996 7778999996544444
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-23 Score=226.24 Aligned_cols=188 Identities=11% Similarity=0.130 Sum_probs=152.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------eCcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------VGDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~~~~~lt 165 (397)
|+|||=-++||..+||+|+|||||||||++|+|-.... ..+|+|.++|. ++.+|||-|+....+ .+|
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~---~~T 880 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKDQETFARVSGYVEQQDIHSP---ELT 880 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCchhhhccccceeecccccCc---ccc
Confidence 99999999999999999999999999999999976533 57899999998 467999999865444 689
Q ss_pred HHHHHhcCCC-------ChhhHHHHHHHHHHHCCCcccc-----cCCCCCChHHHHHHHHHHHHcCCC-CeEeecccccc
Q 015952 166 LYDTRSLSDD-------ASDNINMIKLWIMEGVRHGELV-----IRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIF 232 (397)
Q Consensus 166 v~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~~~-----~~~~~lSGGqkQRvaIArAL~~~P-~iLllDEP~~s 232 (397)
|+|.+.|+.. +.++..+.++++++.++|.+.. .....||..||+|+.||--|+.+| .||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il-------- 952 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL-------- 952 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE--------
Confidence 9999998753 3455668899999999995432 234568999999999999999999 788
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEee-CCEEeeeCCccc
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRTY-LGELLGIPPAKQ 306 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l~-~G~iv~~g~~~e 306 (397)
.||||| |+||..... ..++.++++ ...|+|||++=|. ++.+..||+. .|+ .|+.|..|+..+
T Consensus 953 FLDEPT--SGLDsqaA~--~i~~~lrkl-------a~tGqtIlCTIHQPS~~ife~FD~LL-LLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPT--SGLDSQAAA--IVMRFLRKL-------ADTGQTILCTIHQPSIDIFEAFDELL-LLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCC--CCccHHHHH--HHHHHHHHH-------HhcCCeEEEEecCCcHHHHHHHhHHH-HHhcCCeEEEecCccc
Confidence 666667 888866544 345555554 2589999999993 8889999994 575 689999888754
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-22 Score=201.28 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=133.3
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
.-+.+.|++++|. +..+ ++|+.|++.+|+.++|+|||||||||+|++|+|-.. |..=.+.+-
T Consensus 74 ~dvk~~sls~s~~-g~~l-----~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y------- 135 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-GVEL-----IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFY------- 135 (614)
T ss_pred ccceeeeeeeccC-Ccee-----eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchh-------
Confidence 3588999999996 3335 999999999999999999999999999999999988 644333221
Q ss_pred EEecCCCCCCCCCCccHHHHHh-cCCC----------------------------------ChhhHHHHHHHHHHHCCC-
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRS-LSDD----------------------------------ASDNINMIKLWIMEGVRH- 193 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~-~~~~----------------------------------~~~~~~~~~~~ll~~vgl- 193 (397)
.+.++. .++ ..++.+-+. .... ..+..+.++..+|..+|.
T Consensus 136 ~ls~e~-~ps---~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~ 211 (614)
T KOG0927|consen 136 LLSREI-EPS---EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFL 211 (614)
T ss_pred hhcccC-CCc---hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCC
Confidence 111211 111 111111111 1000 112223445566777766
Q ss_pred cc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 194 GE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 194 ~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
.+ ..++..++|||||.|+++||||..+|++| +||||| +.||. .....+.+.+ .+...
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LL--------LLDEPt--nhLDl------eA~~wLee~L------~k~d~ 269 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLL--------LLDEPT--NHLDL------EAIVWLEEYL------AKYDR 269 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHHHHHhcCCCEE--------EecCCc--cCCCH------HHHHHHHHHH------HhccC
Confidence 33 46678899999999999999999999999 666667 77773 3344555553 12233
Q ss_pred -eEEEEec--hhHHccccEEEEEeeCCE-EeeeCCccccc
Q 015952 273 -PVVVVTH--GDLLSLTDRARIRTYLGE-LLGIPPAKQIF 308 (397)
Q Consensus 273 -TVIivTH--~~~~~~aDrI~v~l~~G~-iv~~g~~~el~ 308 (397)
++|+++| |.+-..|..| +.|++++ +...|+-++..
T Consensus 270 ~~lVi~sh~QDfln~vCT~I-i~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 270 IILVIVSHSQDFLNGVCTNI-IHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred ceEEEEecchhhhhhHhhhh-heecccceeeecCCHHHHh
Confidence 8999999 6999999999 7899999 45556655543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=178.75 Aligned_cols=168 Identities=10% Similarity=0.045 Sum_probs=106.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccE----EEECce-eCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ----VTYNSS-VGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~----I~i~G~-~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
++++++++.+| +.+|+||||||||||+.+|.-.+.........|. +.-.|. ...|.+.||+..++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-------- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-------- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--------
Confidence 66688888888 8899999999999999999865441110001121 111121 346888888876543
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH----cCCCCeEeeccccccccchhhhhccc
Q 015952 168 DTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI----GCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 168 eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL----~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
| .........+.++++. -....+++.++|+|||||++||+|+ +.+|+++++||| | +++
T Consensus 83 -~-----~~~~~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP--------~--~gl 144 (198)
T cd03276 83 -N-----PLCVLSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF--------D--VFM 144 (198)
T ss_pred -C-----cCCHHHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCc--------c--ccc
Confidence 1 1111123456666666 2234567889999999999999999 689999955554 5 666
Q ss_pred cccchhhhHHHHHHHHhcCCCcccc-cCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSF-RDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~-~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
|..... ...+.+.+.. .. ..+.|||++||+ .+..+ |||. +|..+
T Consensus 145 D~~~~~--~~~~~l~~~~-----~~~~~~~~iii~th~~~~i~~~-d~v~-~~~~~ 191 (198)
T cd03276 145 DMVNRK--ISTDLLVKEA-----KKQPGRQFIFITPQDISGLASS-DDVK-VFRMK 191 (198)
T ss_pred CHHHHH--HHHHHHHHHH-----hcCCCcEEEEEECCcccccccc-ccee-EEEec
Confidence 644332 2344444431 11 134689999995 66665 9996 47754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=199.58 Aligned_cols=194 Identities=18% Similarity=0.128 Sum_probs=148.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.|.+++.+|+|.|+.+.+ +. +.+++++++--+.++++|+||+||||+++++.|-.. |.+|.+.+.+ +.+|
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~-r~ri 429 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHP-RLRI 429 (582)
T ss_pred CCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecc-ccee
Confidence 368999999999987762 22 889999999999999999999999999999999999 9999999887 5689
Q ss_pred EEEecCCCCCCCCCCccH--HHHHhcCCCChhhHHHHHHHHHHHCCC-cccccCC-CCCChHHHHHHHHHHHHcCCCCeE
Q 015952 149 TYFLQEYTIPRGSNSFSL--YDTRSLSDDASDNINMIKLWIMEGVRH-GELVIRR-SDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv--~eni~~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~-~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
+|.+|.+.-+. .+.+ .|.+.-.. ....++.+.+-+..+|+ +++..++ ..||||||-||++|.....+|-+|
T Consensus 430 ~~f~Qhhvd~l---~~~v~~vd~~~~~~--pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL 504 (582)
T KOG0062|consen 430 KYFAQHHVDFL---DKNVNAVDFMEKSF--PGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL 504 (582)
T ss_pred cchhHhhhhHH---HHHhHHHHHHHHhC--CCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE
Confidence 99999864321 1222 22222111 11134556678999999 6665444 668999999999999999999999
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEee
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~ 300 (397)
+||||| +.||.. .+..+.+.+ . .-+-.||+|||| ++...|+.++ +.++|++..
T Consensus 505 --------VLDEPT--NhLD~d------sl~AL~~Al----~--~F~GGVv~VSHd~~fi~~~c~E~W-vve~g~vt~ 559 (582)
T KOG0062|consen 505 --------VLDEPT--NHLDRD------SLGALAKAL----K--NFNGGVVLVSHDEEFISSLCKELW-VVEDGKVTP 559 (582)
T ss_pred --------EecCCC--ccccHH------HHHHHHHHH----H--hcCCcEEEEECcHHHHhhcCceeE-EEcCCcEEe
Confidence 888888 777732 334444433 1 123359999995 8999999995 599999876
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=169.78 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=138.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
...|+++++.|+|....++ +-|+|++++.|....+||.||||||||+|+++|=-- .-.|.|.++|..
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 4579999999999766666 899999999999999999999999999999999666 666999999972
Q ss_pred -------CcEEEEecCCC---CCCC----CCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHH
Q 015952 146 -------GDGTYFLQEYT---IPRG----SNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 -------~~ig~v~Q~~~---l~~~----~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQR 210 (397)
....|+--+-. .+.+ .-.+++.. +.|+.. ..- ++-+++.+.+.++ ..-+.+..|-|||+|
T Consensus 81 Dt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~g~dp---~Rre~LI~iLDId-l~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 81 DTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVGGDDP---ERREKLIDILDID-LRWRMHKVSDGQRRR 155 (291)
T ss_pred cccccccCceeEecccccccccccccccccccccHHH-HHhhccCCCh---hHhhhhhhheecc-ceEEEeeccccchhh
Confidence 22333322110 0000 01244443 333322 111 3344555655553 223456789999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDr 288 (397)
|.|++.|++.=++| +|||.|+ .||...+. ..++-+++. ...+|.|||..|| |-++..+.+
T Consensus 156 VQicMGLL~PfkVL--------LLDEVTV--DLDVlARa--dLLeFlkeE------ce~RgatIVYATHIFDGLe~Wpth 217 (291)
T KOG2355|consen 156 VQICMGLLKPFKVL--------LLDEVTV--DLDVLARA--DLLEFLKEE------CEQRGATIVYATHIFDGLETWPTH 217 (291)
T ss_pred hHHHHhcccceeEE--------EeeeeEe--ehHHHHHH--HHHHHHHHH------HhhcCcEEEEEeeeccchhhcchh
Confidence 99999999999999 7788884 44432222 122222221 1247999999999 888999999
Q ss_pred EEEEeeCCEEeeeCC
Q 015952 289 ARIRTYLGELLGIPP 303 (397)
Q Consensus 289 I~v~l~~G~iv~~g~ 303 (397)
+ +.|.+|+++..-+
T Consensus 218 l-~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 218 L-VYIKSGKLVDNLK 231 (291)
T ss_pred E-EEecCCeeeeccc
Confidence 9 5899999998443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-21 Score=194.35 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=127.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE--
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG-- 148 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i-- 148 (397)
-|.+.+.+..|+ ++.+ |++-++++..|..++|+|+||+|||||||+|+. |+|........+
T Consensus 80 Di~~~~fdLa~G-~k~L-----L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----------~~v~~f~veqE~~g 142 (582)
T KOG0062|consen 80 DIHIDNFDLAYG-GKIL-----LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----------GQVSGFHVEQEVRG 142 (582)
T ss_pred ceeeeeeeeeec-chhh-----hcCCceeeecccccceeCCCCCcHHHHHHHHHh-----------cCcCccCchhheec
Confidence 577889999997 4435 999999999999999999999999999999986 222222211110
Q ss_pred EEEe--cCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCC-cccccC-CCCCChHHHHHHHHHHHHcCCCC
Q 015952 149 TYFL--QEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRH-GELVIR-RSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 149 g~v~--Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl-~~~~~~-~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
-+++ |+ .+.. ...+.+.+.-... ..-...+...++|..+|. .++..+ ..++|||=|-|+++||||..+||
T Consensus 143 ~~t~~~~~-~l~~---D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pD 218 (582)
T KOG0062|consen 143 DDTEALQS-VLES---DTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPD 218 (582)
T ss_pred cchHHHhh-hhhc---cHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCC
Confidence 0111 11 1111 2233333322211 111223344458899999 444444 46789999999999999999999
Q ss_pred eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-
Q 015952 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL- 299 (397)
Q Consensus 223 iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv- 299 (397)
|| +||||| +.||. ..+..+.+.+ ...+.|+|+|+|| ++-..|..| |.+++-++-
T Consensus 219 lL--------LLDEPT--NhLDv------~av~WLe~yL------~t~~~T~liVSHDr~FLn~V~tdI-IH~~~~kL~~ 275 (582)
T KOG0062|consen 219 LL--------LLDEPT--NHLDV------VAVAWLENYL------QTWKITSLIVSHDRNFLNTVCTDI-IHLENLKLDY 275 (582)
T ss_pred EE--------eecCCc--ccchh------HHHHHHHHHH------hhCCceEEEEeccHHHHHHHHHHH-HHHhhhhhhh
Confidence 99 666667 67772 3344555543 2345899999995 888999999 677776653
Q ss_pred eeCCccccc
Q 015952 300 GIPPAKQIF 308 (397)
Q Consensus 300 ~~g~~~el~ 308 (397)
..|+-+++.
T Consensus 276 YkGN~~~Fv 284 (582)
T KOG0062|consen 276 YKGNYSQFV 284 (582)
T ss_pred hcCcHHHHH
Confidence 335555443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=188.85 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=129.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.|++-+.||+|.|++..+. +++++|-|.-...+|||||||.||||||+++.|-+. |+.|+..-+- +-+|
T Consensus 584 PPvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnh-rL~i 652 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNH-RLRI 652 (807)
T ss_pred CCeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccc-eeee
Confidence 4688899999999766655 899999999999999999999999999999999999 9999987654 5679
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCC-ccc-ccCCCCCChHHHHHHHHHHHHcCCCCeEe
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRH-GEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl-~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iLl 225 (397)
|++-|.++-.- .-.-|..|.+.-... +. +.+...|..+|| .+. .-+..+|||||+-||++|---+..|++|
T Consensus 653 G~FdQh~~E~L-~~Eetp~EyLqr~FNlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl- 726 (807)
T KOG0066|consen 653 GWFDQHANEAL-NGEETPVEYLQRKFNLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL- 726 (807)
T ss_pred echhhhhHHhh-ccccCHHHHHHHhcCCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE-
Confidence 99998864211 002355554432211 22 334567888998 443 3457789999999999999999999999
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
|||||| +.||.. .++.+.+.+ .+-.-.|||||||
T Consensus 727 -------ILDEPT--NNLDIE------SIDALaEAI------ney~GgVi~VsHD 760 (807)
T KOG0066|consen 727 -------ILDEPT--NNLDIE------SIDALAEAI------NEYNGGVIMVSHD 760 (807)
T ss_pred -------EecCCC--CCcchh------hHHHHHHHH------HhccCcEEEEecc
Confidence 777778 777733 334444443 1223469999996
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=186.74 Aligned_cols=278 Identities=17% Similarity=0.227 Sum_probs=177.4
Q ss_pred CCCcccccccCCCCccccCCCCCCCcCCCCCCcchhhhhHHHHHHHHHH-------------------------------
Q 015952 2 GGEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRR------------------------------- 50 (397)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 50 (397)
|||..--|.-|-=|.....-+--||||+.+|-+.-...+++.++++|.-
T Consensus 484 GGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~G 563 (935)
T COG0178 484 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHG 563 (935)
T ss_pred hhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCC
Confidence 6666666777777777777777899999999999888888888888753
Q ss_pred -----HHHHHHHhcccccccc-----------------CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEE
Q 015952 51 -----DAVFREVLQSYDQLRT-----------------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 51 -----~~~~~~~~~~~~~~~~-----------------~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....++++.+..+.. .....|++++.+. ++ |+|||.+|+-|.+++|
T Consensus 564 GeIv~~Gtp~~i~~~~~SlTG~YLsg~~~i~vP~~rr~~~~~~L~l~gA~~----nN-------Lkni~v~iPLg~~t~V 632 (935)
T COG0178 564 GEIVAEGTPEELLANPESLTGQYLSGKKTIEVPKKRRAPNGKWLELKGARR----NN-------LKNIDVEIPLGVFTCV 632 (935)
T ss_pred CEEEEccCHHHHHhCCcchhhHhhcCCcccCCcccccCCCCCeEEEecccc----cC-------cccceeecccccEEEE
Confidence 1224555554432111 0112466655431 22 9999999999999999
Q ss_pred ECCCCCcHHHHHH-----HHHcccCCCCCCCcc-----c------EEEECce----------------------------
Q 015952 109 IGPKGSGKSSLVN-----RISKVFENDKFASER-----A------QVTYNSS---------------------------- 144 (397)
Q Consensus 109 vGpnGsGKSTLl~-----~I~Gl~~~~~~~p~~-----G------~I~i~G~---------------------------- 144 (397)
.|-||||||||++ +++..+......|.. | -|.++-.
T Consensus 633 TGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~idkvI~IdQsPIGRTpRSNPATYtg~Fd~IR~lFA~tp 712 (935)
T COG0178 633 TGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTGVFDDIRELFAGTP 712 (935)
T ss_pred EecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhcCeEEEecCCCCCCCCCCCccchhcchHHHHHHHhcCh
Confidence 9999999999993 222222210000111 1 1112211
Q ss_pred ------------------------------eCcEEEEecCCC--------------C---CCC-----CCCccHHHHHhc
Q 015952 145 ------------------------------VGDGTYFLQEYT--------------I---PRG-----SNSFSLYDTRSL 172 (397)
Q Consensus 145 ------------------------------~~~ig~v~Q~~~--------------l---~~~-----~~~ltv~eni~~ 172 (397)
.-.+.|+|+-+. | +.. -..|||.|-..|
T Consensus 713 eAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~ykGK~IadVL~MTveEA~~F 792 (935)
T COG0178 713 EAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKGKNIADVLDMTVEEALEF 792 (935)
T ss_pred HHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEECCccHHHHHhccHHHHHHH
Confidence 001222222111 0 000 013455555554
Q ss_pred CCCChhhHHHHHHHHHHHCCCccc--ccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccccccchhhhhccccccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVIFVVDGLAVLKSMEGDS 247 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~--~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~siLDEpT~~s~LD~~~ 247 (397)
+... ..+ .+..+.|..|||++. -.....||||+.|||-+|.-|.... .+. +||||| .+|-..
T Consensus 793 F~~~-p~I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlY--------iLDEPT--TGLH~~- 859 (935)
T COG0178 793 FEAI-PKI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY--------ILDEPT--TGLHFD- 859 (935)
T ss_pred Hhcc-hHH-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEE--------EeCCCC--CCCCHH-
Confidence 4321 112 234467888999764 3456778999999999999999987 788 777778 455421
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
| ..+.++.+.++. ..|.|||+|.|+ ++.+.||.| +-| ..|+|++.|+|+++...+.
T Consensus 860 D-i~kLl~VL~rLv-------d~GnTViVIEHNLdVIk~AD~I-IDLGPeGG~~GG~iva~GTPeeva~~~~ 922 (935)
T COG0178 860 D-IKKLLEVLHRLV-------DKGNTVIVIEHNLDVIKTADWI-IDLGPEGGDGGGEIVASGTPEEVAKVKA 922 (935)
T ss_pred H-HHHHHHHHHHHH-------hCCCEEEEEecccceEeecCEE-EEcCCCCCCCCceEEEecCHHHHHhCcc
Confidence 1 234555555552 589999999998 999999999 654 4589999999999988653
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=180.94 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=129.7
Q ss_pred CceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCC---CCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHH
Q 015952 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN---DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 168 (397)
Q Consensus 92 ~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~---~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~e 168 (397)
+|+|+||+|++|++++|+|+|||||||++++|+|.... +.+.|++|.|.+--.. --+++|-+...-. ..-|+.|
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-~~a~iPge~Ep~f--~~~tile 474 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-VSALIPGEYEPEF--GEVTILE 474 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-hhhccCccccccc--CchhHHH
Confidence 39999999999999999999999999999999996542 2356999999874332 2234554432111 1346666
Q ss_pred HHhcCCCChhhHHHHHHHHHHHCCCccc---ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 169 TRSLSDDASDNINMIKLWIMEGVRHGEL---VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 169 ni~~~~~~~~~~~~~~~~ll~~vgl~~~---~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
.+.--. ..-..+.++|.+.|+.+. ..++.+||-|||.|..||++++..|.+++.||. .+.|||.|.
T Consensus 475 hl~s~t----GD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF-~AhLD~~TA------ 543 (593)
T COG2401 475 HLRSKT----GDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF-AAHLDELTA------ 543 (593)
T ss_pred HHhhcc----CchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh-hhhcCHHHH------
Confidence 653211 111245679999999443 556788999999999999999999999988888 778888873
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHcc-ccEEEEEeeCCEE
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSL-TDRARIRTYLGEL 298 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~-aDrI~v~l~~G~i 298 (397)
....+.+.++- .+-|.|++++|| +....+ -|++ +.+.-|+.
T Consensus 544 -----~rVArkisela------Re~giTlivvThrpEv~~AL~PD~l-i~vgYg~v 587 (593)
T COG2401 544 -----VRVARKISELA------REAGITLIVVTHRPEVGNALRPDTL-ILVGYGKV 587 (593)
T ss_pred -----HHHHHHHHHHH------HHhCCeEEEEecCHHHHhccCCcee-EEeecccc
Confidence 23445555542 346999999999 355555 5888 55665554
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=181.87 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=129.4
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
|.++||-.--+.+.-+ +..++|+|++|--+.|+||||||||+|+|+|+||.+ ...|...+ ..+.++-|+
T Consensus 482 I~lenIpvItP~~~vv-----v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~-P~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPAGDVL-----VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSI-PRPNNIFYI 550 (728)
T ss_pred eEEecCceeccCccee-----ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeec-CCCcceEec
Confidence 6788888777766533 788999999999999999999999999999999998 65555543 235679999
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCC-----hhhHHHHHHHHHHHCCCcccc----------cCCCCCChHHHHHHHHHHH
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDA-----SDNINMIKLWIMEGVRHGELV----------IRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~-----~~~~~~~~~~ll~~vgl~~~~----------~~~~~lSGGqkQRvaIArA 216 (397)
||.|..-. =|++|-+.++... +.-.++....+|..|+|++.. +...-||||+|||+++||-
T Consensus 551 PQRPYms~----gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 551 PQRPYMSG----GTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred cCCCccCc----CcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 99986543 3777777776541 111123345566666664432 2334569999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
+.++|+.- +|||-| ++.....+. .+-+.. +.-|.+.|-|||+ .+.++-...
T Consensus 627 ~yHrPkya--------lLDEcT--sAvsidvE~------~i~~~a------k~~gi~llsithrpslwk~h~~l 678 (728)
T KOG0064|consen 627 FYHRPKYA--------LLDECT--SAVSIDVEG------KIFQAA------KDAGISLLSITHRPSLWKYHTHL 678 (728)
T ss_pred HhcCcchh--------hhhhhh--cccccchHH------HHHHHH------HhcCceEEEeecCccHHHHHHHH
Confidence 99999999 777778 555533322 222221 2368999999996 666666655
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=196.49 Aligned_cols=272 Identities=15% Similarity=0.082 Sum_probs=168.3
Q ss_pred CCCcccccccCCCCccccCCCCCCCcCCCCCCcchhhhhHHHHHHHHHH------HHHHHHHhccccc---cccC-----
Q 015952 2 GGEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRR------DAVFREVLQSYDQ---LRTR----- 67 (397)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~----- 67 (397)
|||-.--|.-+-=|..+..-+-=||||+.+|-+.-...+++.+.+++.. ++.=.+++...+. +-+.
T Consensus 1390 GGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iidiGPgAG~~G 1469 (1809)
T PRK00635 1390 DGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIHLGPGSGPQG 1469 (1809)
T ss_pred chHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeCCCccCCC
Confidence 4554444444444555555555699999999999999988888888754 1111222222111 0000
Q ss_pred -----------------------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 68 -----------------------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 68 -----------------------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
..+.|++ +.+ ..+|+||+++|+-|.+++|.|.||||||||++-+.
T Consensus 1470 G~iv~~G~~~~l~~~~~~~~~~~~~~~l~l-~a~-----------~nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l 1537 (1809)
T PRK00635 1470 GYLLSTSALKQSQPDLHNTRSSEETPTLSV-SLS-----------IHTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGF 1537 (1809)
T ss_pred CEEEecCCHHHHhhhcccccccccCcEEEE-ecc-----------cccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHH
Confidence 0012333 211 12299999999999999999999999999998544
Q ss_pred ----------cccCCCCCCCcccEEEECce--------------------e-----------------------------
Q 015952 125 ----------KVFENDKFASERAQVTYNSS--------------------V----------------------------- 145 (397)
Q Consensus 125 ----------Gl~~~~~~~p~~G~I~i~G~--------------------~----------------------------- 145 (397)
|+. .-+--|.++-. |
T Consensus 1538 ~~~l~~~l~~g~~------~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lFA~~~~ak~rg~~~~~FSfN~~~GrC~ 1611 (1809)
T PRK00635 1538 YKQACALIEKGPS------VFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFYASLTQAKALNISASMFSTNTKQGQCS 1611 (1809)
T ss_pred HHHHHHHhccccc------ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHHhcCHHHHHcCCCcccccccCCCCCCC
Confidence 221 11122333322 0
Q ss_pred --C-------cEEEEecCCCC-----------------CCC-----CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc
Q 015952 146 --G-------DGTYFLQEYTI-----------------PRG-----SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 194 (397)
Q Consensus 146 --~-------~ig~v~Q~~~l-----------------~~~-----~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~ 194 (397)
+ .+.|.+.-+.. +.. -..|||.|-+.|... ...+ .+..+.|..+||+
T Consensus 1612 ~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ea~~~F~~-~~~i-~~~L~~L~~vGLg 1689 (1809)
T PRK00635 1612 DCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEEVAETFPF-LKKI-QKPLQALIDNGLG 1689 (1809)
T ss_pred CCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHHHHHHhhc-cHHH-HHHHHHHHHcCCC
Confidence 0 11122111000 000 013455555544422 1122 3345689999998
Q ss_pred cc--ccCCCCCChHHHHHHHHHHHHcCC---CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 195 EL--VIRRSDSSSLRNRMRCKAHKIGCE---PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 195 ~~--~~~~~~lSGGqkQRvaIArAL~~~---P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
++ ......|||||.||+-||..|..+ +.++ +||||| .+|++..- ...++.+.++ ..
T Consensus 1690 Yl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~ly--------ilDEPt--~GLh~~d~--~~Ll~~l~~L-------~~ 1750 (1809)
T PRK00635 1690 YLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLF--------LLDEIA--TSLDNQQK--SALLVQLRTL-------VS 1750 (1809)
T ss_pred eeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEE--------EEcCCC--CCCCHHHH--HHHHHHHHHH-------Hh
Confidence 75 455677899999999999999876 6788 777777 66763321 2344444444 25
Q ss_pred CCceEEEEech-hHHccccEEEEEee------CCEEeeeCCcccccCCCCC
Q 015952 270 DDKPVVVVTHG-DLLSLTDRARIRTY------LGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 270 ~g~TVIivTH~-~~~~~aDrI~v~l~------~G~iv~~g~~~el~~~~~~ 313 (397)
.|.|||+|.|+ ++.+.||.| |-|- .|+|++.|+|+++...+.+
T Consensus 1751 ~g~tvivieH~~~~i~~aD~i-idlgp~gG~~GG~iva~Gtp~~i~~~~~S 1800 (1809)
T PRK00635 1751 LGHSVIYIDHDPALLKQADYL-IEMGPGSGKTGGKILFSGPPKDISASKDS 1800 (1809)
T ss_pred cCCeEEEEeCCHHHHHhCCEE-EEcCCCcccCCCEEEEEeCHHHHhhCCCC
Confidence 79999999997 888889999 6653 4799999999999877654
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-19 Score=163.09 Aligned_cols=144 Identities=12% Similarity=0.071 Sum_probs=97.2
Q ss_pred ceeeeEEEcCCc-EEEEECCCCCcHHHHHHHHH--------cccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCC
Q 015952 93 MTLSDYDVPKTT-SLLLIGPKGSGKSSLVNRIS--------KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 163 (397)
Q Consensus 93 L~~isl~I~~Ge-~vaLvGpnGsGKSTLl~~I~--------Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ 163 (397)
+-++||++.+|+ +++|+||||||||||+|+|+ |++- |....+ .++|+.|.....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~v-----p~~~~~-------~~~~~~~~~~~l----- 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPI-----PAAEGS-------SLPVFENIFADI----- 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCc-----cccccc-------cCcCccEEEEec-----
Confidence 456999999995 89999999999999999998 5554 432111 233333321111
Q ss_pred ccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcc
Q 015952 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 164 ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
+. +........+|+||+|++.|++++ .+|+++++||| + ++
T Consensus 80 ----------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp--------~--~g 120 (200)
T cd03280 80 ----------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDEL--------G--SG 120 (200)
T ss_pred ----------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCC--------C--CC
Confidence 11 011233467799999999999885 89999955555 5 66
Q ss_pred ccccchhhhHHHH-HHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeC
Q 015952 243 MEGDSDVEKQYNQ-IVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 243 LD~~~~~~~~~~~-~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g 302 (397)
+|+.... .... .+.++ .+.|.|+|++||+ ++..+||++ +.|++|++..++
T Consensus 121 lD~~~~~--~i~~~~l~~l-------~~~~~~vi~~tH~~~l~~~~d~~-~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGA--ALAIAILEEL-------LERGALVIATTHYGELKAYAYKR-EGVENASMEFDP 172 (200)
T ss_pred CCHHHHH--HHHHHHHHHH-------HhcCCEEEEECCHHHHHHHHhcC-CCeEEEEEEEec
Confidence 7744332 1212 22222 2358899999995 778999999 569999998763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=160.88 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=94.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc----cEEEECce-eCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~----G~I~i~G~-~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
++++.+++.+| +.+|+||||||||||+.+|.-.+......-.. ....-.|. ...|-..++...- .-..
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~------~~~~ 86 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG------NIQV 86 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC------cccc
Confidence 55567777766 77999999999999999997766411000000 01111121 1223333332210 0011
Q ss_pred HHHhcCCCCh---hhHHHHHHHHHHHCCC--cccccCCCCCChHHHHHHHHHHHH----cCCCCeEeeccccccccchhh
Q 015952 168 DTRSLSDDAS---DNINMIKLWIMEGVRH--GELVIRRSDSSSLRNRMRCKAHKI----GCEPSVIRKVNFVIFVVDGLA 238 (397)
Q Consensus 168 eni~~~~~~~---~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGqkQRvaIArAL----~~~P~iLllDEP~~siLDEpT 238 (397)
+|+.+..... +-....-.+++..++- ......+.++|||||||+.+|++| +.+|+++++||| |
T Consensus 87 ~n~~~~~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP--------~ 158 (213)
T cd03277 87 DNLCQFLPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI--------N 158 (213)
T ss_pred CCceEEEchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc--------c
Confidence 1211111100 0000111123333332 223456789999999999877554 589999955555 5
Q ss_pred hhccccccchhhhHHHHHHHHhcCCCcccccCC-ceEEEEech--hHHcccc--EEEEEeeCCE
Q 015952 239 VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD-KPVVVVTHG--DLLSLTD--RARIRTYLGE 297 (397)
Q Consensus 239 ~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g-~TVIivTH~--~~~~~aD--rI~v~l~~G~ 297 (397)
++||+.... ...+.+.+.. .+.| .|+|++||+ ....+|| +| +++++|+
T Consensus 159 --~~LD~~~~~--~i~~~l~~~~------~~~g~~~viiith~~~~~~~~~~~~~v-~~l~~g~ 211 (213)
T cd03277 159 --QGMDPTNER--KVFDMLVETA------CKEGTSQYFLITPKLLPGLNYHEKMTV-LCVYNGP 211 (213)
T ss_pred --ccCCHHHHH--HHHHHHHHHh------hcCCCceEEEEchhhccCCcccCceEE-EEEecCc
Confidence 666644333 2344444331 1224 579999995 6677776 56 4578775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-18 Score=171.16 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=117.2
Q ss_pred eEEEEECCCceEeeccCceeeeE-EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE-----------Cc
Q 015952 76 NKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY-----------NS 143 (397)
Q Consensus 76 nvs~~Y~~~~~v~~~~~L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i-----------~G 143 (397)
++..+|+.+. ++--.| ..++|.+++|+||||-||||.+|+|+|-+. |.=|+..= .|
T Consensus 79 e~vHRYg~Ng-------FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~~~pp~wdeVi~~FrG 146 (591)
T COG1245 79 EVVHRYGVNG-------FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRYEDPPSWDEVIKRFRG 146 (591)
T ss_pred cceeeccCCc-------eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCCCCCCCHHHHHHHhhh
Confidence 5778997554 222334 357899999999999999999999999999 55443211 11
Q ss_pred e------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 144 S------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 144 ~------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
. ..++..-+|--.+.+....=+|.|-+.- ...+-..+++.++++|. -..+...+||||+.||
T Consensus 147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-----~de~g~~devve~l~L~nvl~r~v~~LSGGELQr 221 (591)
T COG1245 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK-----VDERGKFDEVVERLGLENVLDRDVSELSGGELQR 221 (591)
T ss_pred hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh-----hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHH
Confidence 0 0112222332211111011133333211 11112467889999994 4567789999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
+|||-|++++.++. ++|||| |-||...+ ....+.++++. +.+++||+|.|| .+--++|-
T Consensus 222 ~aIaa~l~rdADvY--------~FDEps--SyLDi~qR--l~~ar~Irel~-------~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 222 VAIAAALLRDADVY--------FFDEPS--SYLDIRQR--LNAARVIRELA-------EDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred HHHHHHHhccCCEE--------EEcCCc--ccccHHHH--HHHHHHHHHHh-------ccCCeEEEEechHHHHHHhhhe
Confidence 99999999999999 555556 77884332 35566676663 458999999998 44567788
Q ss_pred EEE
Q 015952 289 ARI 291 (397)
Q Consensus 289 I~v 291 (397)
|.|
T Consensus 283 vhI 285 (591)
T COG1245 283 VHI 285 (591)
T ss_pred eEE
Confidence 754
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=185.70 Aligned_cols=192 Identities=12% Similarity=0.117 Sum_probs=147.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------eCcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------VGDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~~~~~lt 165 (397)
|+|+|.-+++|+.+.++||.|||||||+++++|-..... -..|+|.+||. ++.++|..|+...++ .+|
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p---~lT 205 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFP---ELT 205 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccccccCceEEeccccccccc---eeE
Confidence 999999999999999999999999999999999877444 44679999997 467999999877666 799
Q ss_pred HHHHHhcCCC--------ChhhHHH----HHHHHHHHCCCccc------ccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 166 LYDTRSLSDD--------ASDNINM----IKLWIMEGVRHGEL------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 166 v~eni~~~~~--------~~~~~~~----~~~~ll~~vgl~~~------~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
|+|.+.|..+ ..-.+++ ..+.+++.+||.+- +.-....|||||+||++|-+++.+|+++.+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999998755 1111222 45688999999543 2223345999999999999999999999555
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec---hhHHccccEEEEEeeCCEEeeeCCc
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH---GDLLSLTDRARIRTYLGELLGIPPA 304 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH---~~~~~~aDrI~v~l~~G~iv~~g~~ 304 (397)
|+ | .+||..+.. +.++.++++- +..+.|+++.-| +++..+.|.| ++|.+|+++..|+.
T Consensus 286 e~--------t--~GLDSsTal--~iik~lr~~a------~~~~~t~~vsi~Q~s~~~~~lFD~v-~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 286 EI--------T--RGLDSSTAF--QIIKALRQLA------HITGATALVSILQPSPEIYDLFDDV-ILLSEGYQIYQGPR 346 (1391)
T ss_pred cc--------c--ccccHHHHH--HHHHHHHHHH------hhhcceEEEEeccCChHHHHhhhhe-eeeeccceEEeccH
Confidence 55 5 566644433 3333333321 235778888888 4999999999 56999999999998
Q ss_pred cccc
Q 015952 305 KQIF 308 (397)
Q Consensus 305 ~el~ 308 (397)
+++.
T Consensus 347 d~~~ 350 (1391)
T KOG0065|consen 347 DEVL 350 (1391)
T ss_pred HHHH
Confidence 8764
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-17 Score=148.04 Aligned_cols=72 Identities=7% Similarity=0.083 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 203 SSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 203 lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
+|+||+||++|||+++ .+|+++++||| + +++|..... ...+.+.++ .+.|.|+|++|
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp--------~--~~LD~~~~~--~i~~~L~~~-------~~~g~tiIiiS 155 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEI--------D--AALDPTNRR--RVSDMIKEM-------AKHTSQFIVIT 155 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECC--------C--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEE
Confidence 8999999999999996 69999955555 5 666644333 233444333 13478999999
Q ss_pred ch-hHHccccEEEEEee
Q 015952 279 HG-DLLSLTDRARIRTY 294 (397)
Q Consensus 279 H~-~~~~~aDrI~v~l~ 294 (397)
|+ .....|||++ .+.
T Consensus 156 H~~~~~~~adrvi-~i~ 171 (178)
T cd03239 156 LKKEMFENADKLI-GVL 171 (178)
T ss_pred CCHHHHhhCCeEE-EEE
Confidence 95 6667899995 454
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-17 Score=156.53 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=103.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE-EEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-YFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig-~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
.+|++++++++++++|.||||||||||+++|+= .. + -.++| |||.+.... .
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~~------------~---la~~g~~vpa~~~~~------~------ 71 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-IV------------L---MAQIGCFVPCDSADI------P------ 71 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-HH------------H---HHHhCCCcCcccEEE------e------
Confidence 899999999999999999999999999999872 21 0 11233 444432111 1
Q ss_pred cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCeEeeccccccccchh---hhhcccccc
Q 015952 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGL---AVLKSMEGD 246 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL--~~~P~iLllDEP~~siLDEp---T~~s~LD~~ 246 (397)
.+++++.++++.+. ....+|.|++|++.+|+++ +.+|+++ +|||| | +.+|..
T Consensus 72 -----------~~~~il~~~~l~d~--~~~~lS~~~~e~~~~a~il~~~~~~sLv--------LLDEp~~gT--~~lD~~ 128 (222)
T cd03285 72 -----------IVDCILARVGASDS--QLKGVSTFMAEMLETAAILKSATENSLI--------IIDELGRGT--STYDGF 128 (222)
T ss_pred -----------ccceeEeeeccccc--hhcCcChHHHHHHHHHHHHHhCCCCeEE--------EEecCcCCC--ChHHHH
Confidence 12234455566322 1456899999999999999 9999999 77777 5 566633
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEeeCCEEeeeCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
... ..+.+.+ . .+.|.++|++|| .++.++||++ ..+++|++...+.
T Consensus 129 ~~~-----~~il~~l----~-~~~~~~vlisTH~~el~~~~~~~-~~i~~g~~~~~~~ 175 (222)
T cd03285 129 GLA-----WAIAEYI----A-TQIKCFCLFATHFHELTALADEV-PNVKNLHVTALTD 175 (222)
T ss_pred HHH-----HHHHHHH----H-hcCCCeEEEEechHHHHHHhhcC-CCeEEEEEEEEEe
Confidence 221 1221221 1 135789999999 4889999999 4699999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-17 Score=146.98 Aligned_cols=136 Identities=17% Similarity=0.281 Sum_probs=87.2
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE-EecCCCCCCCCCCccHHHHHhcCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY-FLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~-v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
.++.+.++.++.|+|||||||||+++.+....- ..+|.+..... .+.|+ +++. ++.+
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~-----~~~~~~~~~~~-~~~g~~~~~~--------------~~~~-- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG-----GAQSATRRRSG-VKAGCIVAAV--------------SAEL-- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH-----hcchhhhccCc-ccCCCcceee--------------EEEE--
Confidence 344555667999999999999999999887776 55555543111 01111 1110 0000
Q ss_pred CChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcC----CCCeEeeccccccccchhhhhccccccchhh
Q 015952 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
.....++|+||+||+++|++|+. +|+++ ++|||+ +++|+....
T Consensus 72 ----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ll--------llDEp~--~gld~~~~~- 118 (162)
T cd03227 72 ----------------------IFTRLQLSGGEKELSALALILALASLKPRPLY--------ILDEID--RGLDPRDGQ- 118 (162)
T ss_pred ----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEE--------EEeCCC--CCCCHHHHH-
Confidence 00012389999999999999986 78999 455555 777754433
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeC
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYL 295 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~ 295 (397)
...+.+.+.. .++.++|++||+ +....+|++ +.|..
T Consensus 119 -~l~~~l~~~~-------~~~~~vii~TH~~~~~~~~d~~-~~l~~ 155 (162)
T cd03227 119 -ALAEAILEHL-------VKGAQVIVITHLPELAELADKL-IHIKK 155 (162)
T ss_pred -HHHHHHHHHH-------hcCCEEEEEcCCHHHHHhhhhE-EEEEE
Confidence 3344444432 237899999995 666789999 45653
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=152.85 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHcC----CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 203 SSSLRNRMRCKAHKIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
+||||+||+++|++++. +|+++ ++|||| ++||+.... ...+.+.+. ..+.|+|++|
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vl--------llDEp~--~~Ld~~~~~--~l~~~l~~~--------~~~~tii~is 230 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTL--------IFDEID--TGISGEVAQ--AVGKKLKEL--------SRSHQVLCIT 230 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH--------hCCCEEEEEe
Confidence 79999999999997654 99999 555555 666644332 233444332 3478999999
Q ss_pred ch-hHHccccEEEEEeeCCEE
Q 015952 279 HG-DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 279 H~-~~~~~aDrI~v~l~~G~i 298 (397)
|+ .+..+||+++ .+.+|..
T Consensus 231 H~~~~~~~~d~~~-~l~~~~~ 250 (276)
T cd03241 231 HLPQVAAMADNHF-LVEKEVE 250 (276)
T ss_pred chHHHHHhcCcEE-EEEEecC
Confidence 96 6778999995 5776543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-16 Score=145.17 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=84.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC-cccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p-~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
++|++|+. |++++|+||||||||||+|+|+|... . ..|. .+.. -.+++|...++. .+++.||+.
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~-~v~a----~~~~~q~~~l~~---~~~~~d~l~ 81 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGA-PVCA----SSFELPPVKIFT---SIRVSDDLR 81 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCC-EEec----CccCcccceEEE---eccchhccc
Confidence 77777765 79999999999999999999998763 1 1222 1111 246778655655 689999998
Q ss_pred cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhh
Q 015952 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~ 251 (397)
++.........++.++++.+++ .+|+++++||| + +++|+....
T Consensus 82 ~~~s~~~~e~~~~~~iL~~~~~-------------------------~~p~llllDEp--------~--~glD~~~~~-- 124 (199)
T cd03283 82 DGISYFYAELRRLKEIVEKAKK-------------------------GEPVLFLLDEI--------F--KGTNSRERQ-- 124 (199)
T ss_pred cccChHHHHHHHHHHHHHhccC-------------------------CCCeEEEEecc--------c--CCCCHHHHH--
Confidence 8764322222456777777762 79999955555 4 666644332
Q ss_pred HHHH-HHHHhcCCCcccccCCceEEEEech
Q 015952 252 QYNQ-IVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 252 ~~~~-~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.... .+.++ .+.|.|+|++||+
T Consensus 125 ~l~~~ll~~l-------~~~~~tiiivTH~ 147 (199)
T cd03283 125 AASAAVLKFL-------KNKNTIGIISTHD 147 (199)
T ss_pred HHHHHHHHHH-------HHCCCEEEEEcCc
Confidence 1112 23222 1358899999994
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-16 Score=147.57 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=91.9
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcc-cCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl-~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
.|+++.+|++++|+||||||||||+++|++. +. +..|.... .....+++..|.... +...++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-----~~~g~~~~-~~~~~i~~~dqi~~~------~~~~d~----- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-----AQIGCFVP-AESASIPLVDRIFTR------IGAEDS----- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-----HHcCCCcc-ccccccCCcCEEEEE------ecCccc-----
Confidence 5677778999999999999999999999943 32 33332211 112223332222111 111111
Q ss_pred CChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHH
Q 015952 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~ 254 (397)
.......+|.+++| +..+.+++.+|+++ ++|||+ +++|+.... ...
T Consensus 85 ---------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~ll--------llDEp~--~gld~~~~~--~l~ 130 (202)
T cd03243 85 ---------------------ISDGRSTFMAELLE-LKEILSLATPRSLV--------LIDELG--RGTSTAEGL--AIA 130 (202)
T ss_pred ---------------------ccCCceeHHHHHHH-HHHHHHhccCCeEE--------EEecCC--CCCCHHHHH--HHH
Confidence 11112334666665 66667888999999 555555 677754332 122
Q ss_pred HHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCccc
Q 015952 255 QIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQ 306 (397)
Q Consensus 255 ~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~e 306 (397)
..+.+.+ .+.+.++|++||+ ++...|+++ ..+.+|++...++..+
T Consensus 131 ~~ll~~l------~~~~~~vi~~tH~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHL------LEKGCRTLFATHFHELADLPEQV-PGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHH------HhcCCeEEEECChHHHHHHhhcC-CCeEEEEEEEEecCCe
Confidence 2222221 1358899999995 777889987 4688999988876533
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-15 Score=140.06 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=97.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
.++++|++++ ++++|+|||||||||++|+|+++.-. ...|. .+-.....++++.|- +. ++++.|++..
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~~g~-~vp~~~~~i~~~~~i---~~---~~~~~~~ls~ 88 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQIGS-FVPASKAEIGVVDRI---FT---RIGASDDLAG 88 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hccCC-eeccccceecceeeE---ec---cCCchhhhcc
Confidence 8899999887 89999999999999999999875430 12232 122234556666552 33 4677777655
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCeEeeccccccccchh---hhhccccccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGL---AVLKSMEGDS 247 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL--~~~P~iLllDEP~~siLDEp---T~~s~LD~~~ 247 (397)
+. |.=...++.+++++ +.+|+++ +|||| | +.+|..
T Consensus 89 g~-----------------------------s~f~~e~~~l~~~l~~~~~~~ll--------llDEp~~gt--~~lD~~- 128 (216)
T cd03284 89 GR-----------------------------STFMVEMVETANILNNATERSLV--------LLDEIGRGT--STYDGL- 128 (216)
T ss_pred Cc-----------------------------chHHHHHHHHHHHHHhCCCCeEE--------EEecCCCCC--ChHHHH-
Confidence 42 22222233344443 5799999 77777 5 555531
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
.....+.+.+ ....+.|+|++||+ ++.+++|++ ..+++|++...+..+++
T Consensus 129 ----~~~~~il~~l-----~~~~~~~vi~~TH~~~l~~l~~~~-~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 129 ----SIAWAIVEYL-----HEKIGAKTLFATHYHELTELEGKL-PRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ----HHHHHHHHHH-----HhccCCcEEEEeCcHHHHHHhhcC-CCeEEEEEEEEeeCCeE
Confidence 1112222221 11237899999995 888899988 46888998877666655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=139.17 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 56677888887 789999999999999999976654
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-15 Score=151.37 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=123.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~ 150 (397)
-|.++|.+.+-. |... +.+-||.|-.|..++||||||-||||||+.|+.--- ..|..=.|.+
T Consensus 264 DIKiEnF~ISA~-Gk~L-----FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral---aIPpnIDvLl--------- 325 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLL-----FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL---AIPPNIDVLL--------- 325 (807)
T ss_pred cceeeeeeeecc-ccee-----eeccceEEEecceecccCCCCCchHHHHHHHHhhhc---cCCCCCceEe---------
Confidence 478899888875 3334 788999999999999999999999999999975211 0133223333
Q ss_pred EecCCCCCCCCC----------------------------CccHHHHHhcCC---C--ChhhHHHHHHHHHHHCCC-ccc
Q 015952 151 FLQEYTIPRGSN----------------------------SFSLYDTRSLSD---D--ASDNINMIKLWIMEGVRH-GEL 196 (397)
Q Consensus 151 v~Q~~~l~~~~~----------------------------~ltv~eni~~~~---~--~~~~~~~~~~~ll~~vgl-~~~ 196 (397)
.-|+......+- ..|+.|.+.-.. + .....+.++.++|..+|. .++
T Consensus 326 CEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 326 CEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred eeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH
Confidence 333322211000 011111110000 0 011223456788999998 455
Q ss_pred ccCCCC-CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEE
Q 015952 197 VIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVV 275 (397)
Q Consensus 197 ~~~~~~-lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVI 275 (397)
..+|.+ .|||-|-||++||||..+|-+| .||||| +.||...- -.+.+.+ .--.+|.+
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLL--------MLDEPT--NHLDLNAV------IWLdNYL------QgWkKTLL 463 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLL--------MLDEPT--NHLDLNAV------IWLDNYL------QGWKKTLL 463 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceee--------eecCCc--ccccccee------eehhhHH------hhhhheeE
Confidence 666655 5999999999999999999999 777778 77774321 1222221 11357999
Q ss_pred EEech--hHHccccEEEEEeeCCEEeee
Q 015952 276 VVTHG--DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 276 ivTH~--~~~~~aDrI~v~l~~G~iv~~ 301 (397)
||+|| ++-..|..| |.+++-++...
T Consensus 464 IVSHDQgFLD~VCtdI-IHLD~qkLhyY 490 (807)
T KOG0066|consen 464 IVSHDQGFLDSVCTDI-IHLDNQKLHYY 490 (807)
T ss_pred EEecccchHHHHHHHH-hhhhhhhhhhh
Confidence 99995 899999999 68888776543
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=140.64 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=34.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.-++|+||||||||||+++|+|++. |++|+|.++|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~ 147 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGK 147 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCE
Confidence 5789999999999999999999999 99999999997
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-15 Score=138.19 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=83.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
.+|++|++++|++++|+|||||||||++++|+++.- - .++|+.. |.... .+++.|++..
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-----l-----------a~~G~~v--pa~~~---~l~~~d~I~~ 77 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-----M-----------AQIGCFV--PAEYA---TLPIFNRLLS 77 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-----H-----------HHcCCCc--chhhc---CccChhheeE
Confidence 899999999999999999999999999999998754 1 1222211 22222 3566666533
Q ss_pred CCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhh
Q 015952 173 SDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~ 251 (397)
.++.. ...+....+|+|++|+ ..+.+++.+|+++++ |||+ +++|+.....
T Consensus 78 -----------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvll--------DE~~--~gt~~~~~~~- 128 (204)
T cd03282 78 -----------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLI--------DELG--RGTSSADGFA- 128 (204)
T ss_pred -----------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEe--------cccc--CCCCHHHHHH-
Confidence 22331 1233355679999976 455668899999955 5554 6666433221
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
-....+..+ .+.|.++|++||+
T Consensus 129 l~~~il~~l-------~~~~~~~i~~TH~ 150 (204)
T cd03282 129 ISLAILECL-------IKKESTVFFATHF 150 (204)
T ss_pred HHHHHHHHH-------HhcCCEEEEECCh
Confidence 011222222 1358899999994
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-14 Score=159.42 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=82.9
Q ss_pred HHHHHHHHHHCCCccc--ccCCCCCChHHHHHHHHHHHHcCCC--CeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 181 NMIKLWIMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEP--SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~--~~~~~~lSGGqkQRvaIArAL~~~P--~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
..++. +++.+||++. .+...+|||||+|||+||+||+.+| +++ +||||| ++||+.... ...+.
T Consensus 467 ~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll--------ILDEPt--agLd~~~~~--~L~~~ 533 (943)
T PRK00349 467 RERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY--------VLDEPS--IGLHQRDND--RLIET 533 (943)
T ss_pred HHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE--------EecCCc--cCCCHHHHH--HHHHH
Confidence 34443 7888999654 6678899999999999999999997 899 566666 777754333 34445
Q ss_pred HHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCC
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDI 310 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~ 310 (397)
+.++ .+.|.|||+|||+ +....||+| ++| ++|+++..|+++++...
T Consensus 534 L~~L-------~~~G~TVIvVeH~~~~i~~aD~v-i~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 534 LKHL-------RDLGNTLIVVEHDEDTIRAADYI-VDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred HHHH-------HhCCCEEEEEeCCHHHHHhCCEE-EEeccccCCCCCEEeeccCHHHHhcC
Confidence 5443 2469999999995 444579999 579 99999999999888654
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-14 Score=142.81 Aligned_cols=168 Identities=12% Similarity=0.101 Sum_probs=114.5
Q ss_pred ceeeeEEEcCCc-----EEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEEECceeCcEEEEecCCCCCCCCCCccH
Q 015952 93 MTLSDYDVPKTT-----SLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 93 L~~isl~I~~Ge-----~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
+-+..|.|+.|+ ++..+|+||.|||||+++++|.++ |++| +|-. -.++|-+|...--+ .-||
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~----lnVSykpqkispK~---~~tv 419 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPV----LNVSYKPQKISPKR---EGTV 419 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccc----cceeccccccCccc---cchH
Confidence 677888988885 678999999999999999999999 7765 3322 24778888643222 2366
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 167 YDTRSLSDDASDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 167 ~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
+.-+.--.+..-...+++...++-+.+++. ......||||++||||+|.+|-..+++.+. |||. +.||.
T Consensus 420 R~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYli--------DEps--AylDS 489 (592)
T KOG0063|consen 420 RQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLI--------DEPS--AYLDS 489 (592)
T ss_pred HHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEe--------cCch--hhcCh
Confidence 554321111111112456666666666443 445778999999999999999999999955 5555 66775
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
..+. ..-+.+.+.+ ...++|-.+|.|| .+-.+|||++
T Consensus 490 eQRi--~AskvikRfi------lhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 490 EQRI--IASKVIKRFI------LHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred HHHH--HHHHHHHHHH------HhccchhhhhhhHHHHHHhhcceeE
Confidence 5443 3344555543 2457899999998 4446899994
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-14 Score=158.13 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHCCCccc--ccCCCCCChHHHHHHHHHHHHcCCC--CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcC
Q 015952 187 IMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEP--SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 262 (397)
Q Consensus 187 ll~~vgl~~~--~~~~~~lSGGqkQRvaIArAL~~~P--~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~ 262 (397)
.+..+||+++ .+.+.+|||||+|||+|||||+.+| +++ +||||| ++||+.... ...+.+.++
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll--------ILDEPt--agLD~~~~~--~L~~~L~~L-- 535 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY--------VLDEPS--IGLHQRDNE--RLINTLKRL-- 535 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE--------EEcCCc--cCCCHHHHH--HHHHHHHHH--
Confidence 4778888653 5678899999999999999999986 899 666666 777754433 344555443
Q ss_pred CCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCC
Q 015952 263 CPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDI 310 (397)
Q Consensus 263 ~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~ 310 (397)
.+.|.|||+|+|+ +....||+| ++| ++|+|+..|+++++...
T Consensus 536 -----~~~G~TVIvVeHd~~~i~~aD~v-i~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 536 -----RDLGNTVIVVEHDEETIRAADYV-IDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred -----HhCCCEEEEEECCHHHHhhCCEE-EEecccccCCCCEEeeccCHHHHhcC
Confidence 2469999999995 555699999 579 99999999999887644
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-12 Score=109.94 Aligned_cols=64 Identities=16% Similarity=-0.009 Sum_probs=54.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSN 162 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~ 162 (397)
|++++|++++|++++|+||||||||||++++. +|++.++|. .+.+++++|+ ++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~--- 68 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE--- 68 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---
Confidence 99999999999999999999999999999975 478999997 2346777777 443
Q ss_pred CccHHHHHhcC
Q 015952 163 SFSLYDTRSLS 173 (397)
Q Consensus 163 ~ltv~eni~~~ 173 (397)
-|++||+.++
T Consensus 69 -~ti~~Ni~~~ 78 (107)
T cd00820 69 -IRLRLNIFLI 78 (107)
T ss_pred -hhHHhhceee
Confidence 5999999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-13 Score=122.19 Aligned_cols=136 Identities=14% Similarity=0.106 Sum_probs=72.1
Q ss_pred EEEEECCCCCcHHHHHHHHH-cccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRIS-KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI 183 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~-Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~ 183 (397)
+++|.||||+||||++|.|+ ..+- +..|...... ...++++-+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-----a~~G~~v~a~-~~~~~~~d~------------------------------ 44 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-----AQIGSFVPAE-SAELPVFDR------------------------------ 44 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-----HHhCCCeeeh-heEecccce------------------------------
Confidence 36799999999999999998 4443 3333322111 111111111
Q ss_pred HHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcC
Q 015952 184 KLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFN 262 (397)
Q Consensus 184 ~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~ 262 (397)
++..++. +........+|+|++|...+++. +.+|+++|+||| + +++|+.... .....+.+.+
T Consensus 45 ---il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp--------~--~g~d~~~~~--~~~~~~l~~l- 107 (185)
T smart00534 45 ---IFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDEL--------G--RGTSTYDGV--AIAAAVLEYL- 107 (185)
T ss_pred ---EEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecC--------C--CCCCHHHHH--HHHHHHHHHH-
Confidence 1222222 11233355678888874444332 459999955555 4 666644222 1222222211
Q ss_pred CCcccccCCceEEEEech-hHHccccEEEEEeeCCEE
Q 015952 263 CPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 263 ~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~i 298 (397)
..+.+.++|++||+ ++.++||+- -.+.++++
T Consensus 108 ----~~~~~~~iii~TH~~~l~~~~~~~-~~v~~~~~ 139 (185)
T smart00534 108 ----LEKIGALTLFATHYHELTKLADEH-PGVRNLHM 139 (185)
T ss_pred ----HhcCCCeEEEEecHHHHHHHhhcC-ccceEEEE
Confidence 11247899999995 777778753 12344443
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.2e-12 Score=116.75 Aligned_cols=172 Identities=10% Similarity=0.130 Sum_probs=86.1
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-ccc--CCCCCC--CcccEEEECce-----eCcEEEEecCCCCCC--CC
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVF--ENDKFA--SERAQVTYNSS-----VGDGTYFLQEYTIPR--GS 161 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~--~~~~~~--p~~G~I~i~G~-----~~~ig~v~Q~~~l~~--~~ 161 (397)
+...+.+.+| +++|+|||||||||++.+|. .|- ....+. ..+.-|...+. ...|...+++..... ..
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567777654 99999999999999999993 332 110000 01111222011 123444444432110 00
Q ss_pred CCccHHHHHh------cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCeEeeccccc
Q 015952 162 NSFSLYDTRS------LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG----CEPSVIRKVNFVI 231 (397)
Q Consensus 162 ~~ltv~eni~------~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~----~~P~iLllDEP~~ 231 (397)
....+...+. +...........+...+..+.+. +..+|||||-+++||--|+ ..++++
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~-----~~~lSgGEk~~~~Lal~lA~~~~~~~p~~------- 162 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGIS-----PEFLSGGEKSLVALALLLALQRYKPSPFL------- 162 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTT-----TTGS-HHHHHHHHHHHHHHHHTCS--SEE-------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccc-------
Confidence 0011111000 10011111224445566666553 2288999999999997664 456677
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEE
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARI 291 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v 291 (397)
+|||+. ++||..... ...+.+.+. .++.-+|++||+ .....||+.+.
T Consensus 163 -ilDEvd--~~LD~~~~~--~l~~~l~~~--------~~~~Q~ii~Th~~~~~~~a~~~~~ 210 (220)
T PF02463_consen 163 -ILDEVD--AALDEQNRK--RLADLLKEL--------SKQSQFIITTHNPEMFEDADKLIG 210 (220)
T ss_dssp -EEESTT--TTS-HHHHH--HHHHHHHHH--------TTTSEEEEE-S-HHHHTT-SEEEE
T ss_pred -cccccc--ccccccccc--ccccccccc--------cccccccccccccccccccccccc
Confidence 555555 666644332 334444433 334669999995 88889998853
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=117.95 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=55.1
Q ss_pred CCChHH--------HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 202 DSSSLR--------NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 202 ~lSGGq--------kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
.+|||+ +||+++||++..+++|. +| +| ..+|...+.+.-..+.+ ...+.|
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt--------~l--~T--~~~d~~~~~~~~i~~~~----------~~~~~~ 186 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLT--------II--AT--ALVDTGSRMDDVIFEEF----------KGTGNM 186 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceE--------Ee--ee--heecCCCcccchHHHHH----------hcCCCc
Confidence 359999 99999999999999999 66 66 67775444421111222 125779
Q ss_pred EEEEech-hHHccccEEEEEeeCCEE
Q 015952 274 VVVVTHG-DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 274 VIivTH~-~~~~~aDrI~v~l~~G~i 298 (397)
.|++||+ ......|.|. +|+.|.+
T Consensus 187 ~ivls~~la~~~~~paI~-vl~s~sr 211 (249)
T cd01128 187 ELVLDRRLAERRIFPAID-ILKSGTR 211 (249)
T ss_pred EEEEchHHhhCCCCCeEE-EcCCCCc
Confidence 9999997 7788999994 6999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=114.13 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=77.0
Q ss_pred ceeeeEEEcCC--cEEEEECCCCCcHHHHHHHHHccc-CCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHH
Q 015952 93 MTLSDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVF-ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 169 (397)
Q Consensus 93 L~~isl~I~~G--e~vaLvGpnGsGKSTLl~~I~Gl~-~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~en 169 (397)
=+|+++ .++ .+++|+||||+|||||+|.|+... - +..|...... ...++|+.|.+.-... ..++.++
T Consensus 19 pnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-----a~~G~~v~a~-~~~~~~~d~i~~~l~~--~~si~~~ 88 (213)
T cd03281 19 PNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-----AHIGSFVPAD-SATIGLVDKIFTRMSS--RESVSSG 88 (213)
T ss_pred cceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-----HhCCCeeEcC-CcEEeeeeeeeeeeCC--ccChhhc
Confidence 344554 444 799999999999999999998421 2 3456555432 3457777776432210 1233222
Q ss_pred HhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchh
Q 015952 170 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (397)
Q Consensus 170 i~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~ 249 (397)
+. .=.-+.||+++|++++.+|+++++||| + +++|+....
T Consensus 89 ~S-------------------------------~f~~el~~l~~~l~~~~~~slvllDE~--------~--~gtd~~~~~ 127 (213)
T cd03281 89 QS-------------------------------AFMIDLYQVSKALRLATRRSLVLIDEF--------G--KGTDTEDGA 127 (213)
T ss_pred cc-------------------------------hHHHHHHHHHHHHHhCCCCcEEEeccc--------c--CCCCHHHHH
Confidence 10 012356899999999999999955555 4 677643222
Q ss_pred hhHHHHHHHHhcCCCcccc-cCCceEEEEech
Q 015952 250 EKQYNQIVATTFNCPYLSF-RDDKPVVVVTHG 280 (397)
Q Consensus 250 ~~~~~~~i~~l~~~~~~~~-~~g~TVIivTH~ 280 (397)
......+..+ ... ..+.++|++||+
T Consensus 128 -~~~~ail~~l-----~~~~~~~~~vli~TH~ 153 (213)
T cd03281 128 -GLLIATIEHL-----LKRGPECPRVIVSTHF 153 (213)
T ss_pred -HHHHHHHHHH-----HhcCCCCcEEEEEcCh
Confidence 1112233332 111 123589999994
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-12 Score=139.24 Aligned_cols=129 Identities=11% Similarity=0.111 Sum_probs=79.5
Q ss_pred eeEEEcCC-cEEEEECCCCCcHHHHHHHHHcc-cCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcC
Q 015952 96 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 173 (397)
Q Consensus 96 isl~I~~G-e~vaLvGpnGsGKSTLl~~I~Gl-~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~ 173 (397)
+|+++..+ ++++|+||||+|||||||+|+|. +. +..|. +||..... .+.+++.+...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-----aq~G~-----------~Vpa~~~~-----~~~~~d~i~~~ 372 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-----FQSGI-----------PIPANEHS-----EIPYFEEIFAD 372 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-----HHhCC-----------CccCCccc-----cccchhheeee
Confidence 68888877 89999999999999999999998 45 44441 33333211 01222222110
Q ss_pred CCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHH
Q 015952 174 DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 253 (397)
Q Consensus 174 ~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~ 253 (397)
.... + ........+|+||+|++.|++++ .+|+++|+||| + +++|+.... ..
T Consensus 373 i~~~----~------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~--------g--~GtD~~eg~--al 423 (771)
T TIGR01069 373 IGDE----Q------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDEL--------G--AGTDPDEGS--AL 423 (771)
T ss_pred cChH----h------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCC--------C--CCCCHHHHH--HH
Confidence 0000 0 01223566899999999999887 78999955555 4 666654433 11
Q ss_pred HHHHHHhcCCCcccccCCceEEEEech
Q 015952 254 NQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 254 ~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
...+.+.+ .+.|.++|++||+
T Consensus 424 a~aiLe~l------~~~g~~viitTH~ 444 (771)
T TIGR01069 424 AISILEYL------LKQNAQVLITTHY 444 (771)
T ss_pred HHHHHHHH------HhcCCEEEEECCh
Confidence 11222211 2368899999994
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-12 Score=113.16 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=92.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 184 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~ 184 (397)
.++|+|++|||||||++.|.+.+. + .| +.+ .||+.|+.........+.+.+ . ....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~-----~-~G-~~~------~g~~~~~~~~~~~~~~~~~~~---~--~~~~------ 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK-----E-EG-YKV------GGFYTEEVREGGKRIGFKIID---L--DTGE------ 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-----H-CC-CeE------EEEEcHHHHhcCCccceEEEE---c--CCCC------
Confidence 478999999999999999988776 4 34 222 456655422111001111110 0 0000
Q ss_pred HHHHHHCCC-c--ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhc
Q 015952 185 LWIMEGVRH-G--ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF 261 (397)
Q Consensus 185 ~~ll~~vgl-~--~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~ 261 (397)
...+...+. . ...++...+||+++-++.+++..+.+|+++++||| ..++.. ....++.+.+++
T Consensus 58 ~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~-----------~~~e~~---~~~~~~~l~~~~ 123 (174)
T PRK13695 58 EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEI-----------GKMELK---SPKFVKAVEEVL 123 (174)
T ss_pred eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECC-----------Ccchhh---hHHHHHHHHHHH
Confidence 011222222 1 11233456899999999999999999999966664 222211 123445555542
Q ss_pred CCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeee
Q 015952 262 NCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 262 ~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~ 301 (397)
+.++++|+++|+ .+..++|+| ..+.+|+|...
T Consensus 124 -------~~~~~~i~v~h~~~~~~~~~~i-~~~~~~~i~~~ 156 (174)
T PRK13695 124 -------DSEKPVIATLHRRSVHPFVQEI-KSRPGGRVYEL 156 (174)
T ss_pred -------hCCCeEEEEECchhhHHHHHHH-hccCCcEEEEE
Confidence 568899999995 777889999 57999999765
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=113.59 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++++++.+| +.+|+||||||||||+.+|..+..
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 67789999988 999999999999999999987654
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=117.90 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=44.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++ |.+.+|++++|+|+||+|||||+++|+|+.+ |+.|.|.+.|+
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Ge 194 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGE 194 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEec
Confidence 8999 9999999999999999999999999999999 99999998775
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=109.40 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=40.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc-ccCCCCCCCcccEEEEC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYN 142 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G-l~~~~~~~p~~G~I~i~ 142 (397)
.+|++|++.+|++++|+||||+||||++++|++ .+. +..|.....
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~a 66 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVPA 66 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEEc
Confidence 899999999999999999999999999999999 666 777876554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-10 Score=114.00 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=114.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
+.++-+.++..|..+- .+ ++++ |.+.+|+.++|+|+||+|||||+++|+|..+ ++.|.|.+.|++.
T Consensus 129 ~~~~r~~i~~~l~TGi--ra---ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGerg--- 194 (432)
T PRK06793 129 HAFEREEITDVFETGI--KS---IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGERG--- 194 (432)
T ss_pred CchheechhhccCCCC--EE---Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCCc---
Confidence 3567778888886554 33 7774 9999999999999999999999999999999 8888777665421
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc--ccccCCCCCChHHHHHHHHHHHHc-------CC
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG--ELVIRRSDSSSLRNRMRCKAHKIG-------CE 220 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~--~~~~~~~~lSGGqkQRvaIArAL~-------~~ 220 (397)
.++.+.+.. .+..-++. -......+.|.|+|+|++.+.+.+ .+
T Consensus 195 --------------~ev~e~~~~--------------~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 195 --------------REVKDFIRK--------------ELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred --------------ccHHHHHHH--------------HhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 245554321 12222231 123456778999999999998887 78
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEechhHHccccEEEEEeeCCEEee
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~~~~~aDrI~v~l~~G~iv~ 300 (397)
+-++ ++|++|. ..|+ .+++..++..+ ...|.+..+.|| ..++++|+. ..+.|.|..
T Consensus 247 ~VLl--------ilDslTr--~a~A--------~reisl~~~e~---p~~G~~~~~~s~--l~~L~ERag-~~~~GSiT~ 302 (432)
T PRK06793 247 NVLL--------MMDSVTR--FADA--------RRSVDIAVKEL---PIGGKTLLMESY--MKKLLERSG-KTQKGSITG 302 (432)
T ss_pred cEEE--------EecchHH--HHHH--------HHHHHHHhcCC---CCCCeeeeeecc--chhHHHHhc-cCCCcceEE
Confidence 8888 7777783 3332 23443332111 124788888787 456666774 467888776
Q ss_pred eCCc
Q 015952 301 IPPA 304 (397)
Q Consensus 301 ~g~~ 304 (397)
.++.
T Consensus 303 ~~tv 306 (432)
T PRK06793 303 IYTV 306 (432)
T ss_pred EEEE
Confidence 6544
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-11 Score=123.39 Aligned_cols=57 Identities=14% Similarity=0.291 Sum_probs=49.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEEECcee---------CcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV---------GDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~i~G~~---------~~ig~v~Q~~~ 156 (397)
|++|||+|++||+++|+|||||||||||+ +|+.. |++| +|.++|.. ...-+|||+++
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~fn 88 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSFSPNKNAMETLDEIFDGFN 88 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999 78888 8888 79999972 11128888865
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-10 Score=108.40 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 204 SSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 204 SGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.|-|++++.|||+++.+|+++++|||
T Consensus 154 ~~v~~~f~~ia~~l~~~p~~~~ldEp 179 (215)
T PTZ00132 154 YNFEKPFLWLARRLTNDPNLVFVGAP 179 (215)
T ss_pred CCHHHHHHHHHHHHhhcccceecCCc
Confidence 34499999999999999999988888
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-10 Score=111.64 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=86.3
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHH-HhcCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT-RSLSD 174 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~en-i~~~~ 174 (397)
+++.++.|+.++|+||+|||||||+++|+++++ +..|.+.+.... .+... + .| +.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ied~~----------El~~~--~----~~~~~l~~ 195 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIEDTR----------EIFLP--H----PNYVHLFY 195 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEcCcc----------ccCCC--C----CCEEEEEe
Confidence 456788999999999999999999999999999 887777664321 11100 0 00 00000
Q ss_pred CChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHH
Q 015952 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~ 254 (397)
.. . ... ++.....-+++.+|-.+|+++++||| .. .+ ..
T Consensus 196 ~~--------------------~--~~~-~~~~~~~~~l~~~Lr~~pd~ii~gE~--------r~--------~e---~~ 233 (308)
T TIGR02788 196 SK--------------------G--GQG-LAKVTPKDLLQSCLRMRPDRIILGEL--------RG--------DE---AF 233 (308)
T ss_pred cC--------------------C--CCC-cCccCHHHHHHHHhcCCCCeEEEecc--------CC--------HH---HH
Confidence 00 0 000 11111223567789999999955555 41 11 22
Q ss_pred HHHHHhcCCCcccccCCc-eEEEEec-hhHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 255 QIVATTFNCPYLSFRDDK-PVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 255 ~~i~~l~~~~~~~~~~g~-TVIivTH-~~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
+.+..+ ..|. +++.++| ..+....+|+ +.|..|++...|.+.+.+
T Consensus 234 ~~l~a~--------~~g~~~~i~T~Ha~~~~~~~~Rl-~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAV--------NTGHPGSITTLHAGSPEEAFEQL-ALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHH--------hcCCCeEEEEEeCCCHHHHHHHH-HHHhhccccccCCCHHHH
Confidence 223222 2444 5689999 4677779999 568888888877776554
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-10 Score=126.20 Aligned_cols=147 Identities=10% Similarity=0.041 Sum_probs=85.5
Q ss_pred eeEEEc-CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE-EEecCCCCCCCCCCccHHHHHhcC
Q 015952 96 SDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-YFLQEYTIPRGSNSFSLYDTRSLS 173 (397)
Q Consensus 96 isl~I~-~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig-~v~Q~~~l~~~~~~ltv~eni~~~ 173 (397)
.|+.+. .+.++.|.|||++||||+||.++...- -. ++| +||-...- .+.+++++..
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~----ma------------q~G~~vpa~~~~-----~i~~~~~i~~- 376 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL----MA------------KSGLPIPANEPS-----EIPVFKEIFA- 376 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH----HH------------HhCCCcccCCCc-----cccccceEEE-
Confidence 344444 457899999999999999999965421 01 122 44433110 1233443322
Q ss_pred CCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhH
Q 015952 174 DDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (397)
Q Consensus 174 ~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~ 252 (397)
.+|. .........+|+||+|++.|++++ .+|+++|+||| + +++|+.... .
T Consensus 377 ----------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~--------~--~GtDp~eg~--a 427 (782)
T PRK00409 377 ----------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDEL--------G--AGTDPDEGA--A 427 (782)
T ss_pred ----------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCC--------C--CCCCHHHHH--H
Confidence 1122 112344677899999999999999 89999955555 4 666654333 1
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeee
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGI 301 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~ 301 (397)
....+.+.+ .+.|.++|++||+ .+...+++. . +.++.+..+
T Consensus 428 la~aile~l------~~~~~~vIitTH~~el~~~~~~~~-~-v~~~~~~~d 470 (782)
T PRK00409 428 LAISILEYL------RKRGAKIIATTHYKELKALMYNRE-G-VENASVEFD 470 (782)
T ss_pred HHHHHHHHH------HHCCCEEEEECChHHHHHHHhcCC-C-eEEEEEEEe
Confidence 222222221 2358899999994 444445555 2 345555543
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-10 Score=116.34 Aligned_cols=160 Identities=18% Similarity=0.100 Sum_probs=97.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-eCcEEEE----ecCCCCCCCCCCccHHHHHhcCCC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-VGDGTYF----LQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-~~~ig~v----~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
.+|++.++||-||-||||-+++++|-++ |.-|...-.-. ..-++|. .|++.. --+.+|+.-...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il~~frgselq~yft------k~le~~lk~~~k 166 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEILTYFRGSELQNYFT------KILEDNLKAIIK 166 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHhhhhhhHHHhhhhh------hhccccccCcCC
Confidence 5799999999999999999999999999 65554321100 0011111 122110 011111111000
Q ss_pred -------------------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccc
Q 015952 176 -------------------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVD 235 (397)
Q Consensus 176 -------------------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLD 235 (397)
.....+....++.+.+.|+. ..+...++|||+.||.+||.+-+.+.++. ++|
T Consensus 167 pQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advy--------MFD 238 (592)
T KOG0063|consen 167 PQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVY--------MFD 238 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhccee--------Eec
Confidence 00111123445666666643 34557889999999999999999999999 455
Q ss_pred hhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 236 GLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 236 EpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
||. +.||..... .....|+.++ ..+.-||+|.|| .+-.++|-|.
T Consensus 239 EpS--sYLDVKQRL--kaA~~IRsl~-------~p~~YiIVVEHDLsVLDylSDFiC 284 (592)
T KOG0063|consen 239 EPS--SYLDVKQRL--KAAITIRSLI-------NPDRYIIVVEHDLSVLDYLSDFIC 284 (592)
T ss_pred CCc--ccchHHHhh--hHHHHHHHhh-------CCCCeEEEEEeechHHHhhhccee
Confidence 555 777744333 3445555553 456779999997 4445567663
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=115.61 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=82.7
Q ss_pred HHHHCCCccc--ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCC
Q 015952 187 IMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP 264 (397)
Q Consensus 187 ll~~vgl~~~--~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~ 264 (397)
.|-.|||+++ .+....||||+.||+.||.-+-..=-=+ +++||||+ -+|-+.-.+ +.+..+.++
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGV------lYVLDEPS--IGLHqrDn~--rLi~tL~~L---- 529 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV------LYVLDEPS--IGLHQRDNE--RLIETLKRL---- 529 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceee------EEEecCCc--cCCChhhHH--HHHHHHHHH----
Confidence 4667788765 5557789999999999999999884422 36899998 666633222 334444433
Q ss_pred cccccCCceEEEEech-hHHccccEEEEE------eeCCEEeeeCCcccccCCCCC
Q 015952 265 YLSFRDDKPVVVVTHG-DLLSLTDRARIR------TYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 265 ~~~~~~g~TVIivTH~-~~~~~aDrI~v~------l~~G~iv~~g~~~el~~~~~~ 313 (397)
+..|.|+|+|.|| ++.+.||+| |- .+.|+|++.|++++++..+++
T Consensus 530 ---RDlGNTviVVEHDedti~~AD~i-IDiGPgAG~~GGeIv~~Gtp~~i~~~~~S 581 (935)
T COG0178 530 ---RDLGNTVIVVEHDEDTIRAADHI-IDIGPGAGEHGGEIVAEGTPEELLANPES 581 (935)
T ss_pred ---HhcCCeEEEEecCHHHHhhcCEE-EeeCCCCCcCCCEEEEccCHHHHHhCCcc
Confidence 2469999999996 999999999 55 467899999999999988854
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=112.66 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=54.2
Q ss_pred CCCCCChHHHHHHHHHHHHc----------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc
Q 015952 199 RRSDSSSLRNRMRCKAHKIG----------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF 268 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~----------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~ 268 (397)
.+..+||||+||++||+||+ .+|+++ +|||||. ++||.... ..+.+.+ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~l--------ilDEp~~-~~ld~~~~------~~~~~~l----~~~ 525 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLL--------ILDEVFD-GALDAEGT------KALLSIL----DSL 525 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeE--------EEecccC-cccchhHH------HHHHHHH----HhC
Confidence 34678999999999999988 599999 5555542 45664332 2333332 112
Q ss_pred cCCceEEEEech-hHHccccEEEEEeeC-CEE
Q 015952 269 RDDKPVVVVTHG-DLLSLTDRARIRTYL-GEL 298 (397)
Q Consensus 269 ~~g~TVIivTH~-~~~~~aDrI~v~l~~-G~i 298 (397)
.|.|||+|||+ .....|||++ +|.+ |+.
T Consensus 526 -~~~~iiiish~~~~~~~~d~~~-~l~~~~~~ 555 (562)
T PHA02562 526 -KDTNVFVISHKDHDPQKFDRHL-KMEKVGRF 555 (562)
T ss_pred -CCCeEEEEECchhchhhhhcEE-EEEEECCe
Confidence 57899999995 6667899994 5764 543
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-09 Score=108.11 Aligned_cols=78 Identities=8% Similarity=0.044 Sum_probs=66.0
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
..+.++.+++++.|..+. .+ ++.++ .|.+|++++|+||||||||||+++|+++.+ |+.|.|.+.|+
T Consensus 136 ~p~~~~r~~v~~~l~TGi--~a---ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGergr 204 (450)
T PRK06002 136 APPAMTRARVETGLRTGV--RV---IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGERGR 204 (450)
T ss_pred CCCCeEeecceEEcCCCc--EE---eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecccCCc
Confidence 345789999999997554 34 77785 999999999999999999999999999999 99999988653
Q ss_pred --------------eCcEEEEecCCC
Q 015952 145 --------------VGDGTYFLQEYT 156 (397)
Q Consensus 145 --------------~~~ig~v~Q~~~ 156 (397)
++.|+|+||...
T Consensus 205 ev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 205 EVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred cHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 257899999754
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-09 Score=112.76 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHcCC----CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEE
Q 015952 202 DSSSLRNRMRCKAHKIGCE----PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 277 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~----P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIiv 277 (397)
.+||||+||++||++++.. |+++ ++|||+ +++|..... ...+.+.++ .++++||+|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~l--------ilDEp~--~gld~~~~~--~~~~~l~~l--------~~~~~vi~i 499 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTL--------IFDEVD--VGVSGETAQ--AIAKKLAQL--------SERHQVLCV 499 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH--------hcCCEEEEE
Confidence 3499999999999999986 5899 555555 666644332 233444333 347899999
Q ss_pred ech-hHHccccEEEEEeeCCE
Q 015952 278 THG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 278 TH~-~~~~~aDrI~v~l~~G~ 297 (397)
||+ .+..+||++ ++|++|.
T Consensus 500 TH~~~~~~~ad~~-~~l~k~~ 519 (563)
T TIGR00634 500 THLPQVAAHADAH-FKVEKEG 519 (563)
T ss_pred EChHHHHHhcCeE-EEEEEcc
Confidence 995 555789999 5688875
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=94.72 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=26.8
Q ss_pred EcCCcEEEEECCCCCcHHHH-HHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSL-VNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTL-l~~I~Gl~~ 128 (397)
+++|+++.|+|||||||||| ++.+.++.+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 68899999999999999999 699999876
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=96.52 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+|++|++++|++++|.||||+||||+++.+++..-
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~ 55 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVI 55 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHH
Confidence 889999999999999999999999999999988643
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-09 Score=108.61 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=51.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
+++.++.+++|.++++||||||||||++..|++.+. ...|.. +|+++.++. + ..+++|++.+
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~~-------kV~LI~~Dt--~----RigA~EQLr~ 307 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGAS-------KVALLTTDS--Y----RIGGHEQLRI 307 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCCC-------eEEEEeCCc--c----chhHHHHHHH
Confidence 666778888999999999999999999999999887 666642 578898885 3 2678888766
Q ss_pred C
Q 015952 173 S 173 (397)
Q Consensus 173 ~ 173 (397)
.
T Consensus 308 ~ 308 (484)
T PRK06995 308 Y 308 (484)
T ss_pred H
Confidence 3
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-08 Score=85.85 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=53.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 184 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~ 184 (397)
+++|.|||||||||+++.+++... +..|.| .|+..+.... ....+... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v---------~~~~~e~~~~------~~~~~~~~---------~~~ 51 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKV---------VYVDIEEEIE------ELTERLIG---------ESL 51 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEE---------EEEECCcchH------HHHHHHhh---------hhh
Confidence 378999999999999999999887 644444 3444432211 11111100 000
Q ss_pred HHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 185 LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 185 ~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
....+. ...........+..+.++++.+++...+|+++++||+
T Consensus 52 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~ 94 (165)
T cd01120 52 KGALDN--LIIVFATADDPAAARLLSKAERLRERGGDDLIILDEL 94 (165)
T ss_pred cccccc--EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcH
Confidence 000000 0111122233466677788999999999999955555
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=92.45 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=49.5
Q ss_pred cccCCCCCChHHHH------HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 196 LVIRRSDSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 196 ~~~~~~~lSGGqkQ------RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
....+..+|+|++| ....+.+...+|+++ ++|+|+ +.+|. +. ......+.+++.. + ++
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~l--------viD~~~--~~~~~--~~-~~~~~~i~~l~~~--l-~~ 128 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRV--------VIDSVS--GLLLM--EQ-STARLEIRRLLFA--L-KR 128 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEE--------EEeCcH--HHhhc--Ch-HHHHHHHHHHHHH--H-HH
Confidence 34557778999998 555555677899999 555555 33442 11 1112222222100 1 24
Q ss_pred CCceEEEEech--h---------HHccccEEEEEee
Q 015952 270 DDKPVVVVTHG--D---------LLSLTDRARIRTY 294 (397)
Q Consensus 270 ~g~TVIivTH~--~---------~~~~aDrI~v~l~ 294 (397)
.|.|+|+++|+ . +..+||.| +.|+
T Consensus 129 ~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~i-i~l~ 163 (187)
T cd01124 129 FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGV-IRLR 163 (187)
T ss_pred CCCEEEEEeccccCCCcccCcCceeEeeeEE-EEEE
Confidence 68999999993 2 67889999 5566
|
A related protein is found in archaea. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-08 Score=108.67 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHcC----CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 203 SSSLRNRMRCKAHKIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
+||||+||++||++++. +|+++++||| + +++|..... ...+.+.++ .++.+||+||
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEp--------d--~gld~~~~~--~v~~~l~~l--------~~~~qvi~iT 490 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEV--------D--VGISGPTAA--VVGKLLRQL--------GESTQVMCVT 490 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECC--------C--CCCCHHHHH--HHHHHHHHH--------hcCCEEEEEe
Confidence 49999999999999997 5899955555 4 555543222 233444332 3468999999
Q ss_pred ch-hHHccccEEEEEeeCCE
Q 015952 279 HG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 279 H~-~~~~~aDrI~v~l~~G~ 297 (397)
|+ .+..+||+.+ .+.++.
T Consensus 491 H~~~~~~~ad~~~-~v~k~~ 509 (553)
T PRK10869 491 HLPQVAGCGHQHF-FVSKET 509 (553)
T ss_pred cCHHHHHhCCEEE-EEeccc
Confidence 95 6678999994 577654
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-08 Score=92.67 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=53.5
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------eCcEEEEecCCCCCCCCCCccH
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------VGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
+-+.+.+++|+.++|+||||||||||+++|+|+++ |+.|.|.+.+. +..+++++|..... ....+++
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~-~~~~~~~ 89 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDTAELQLPHPNWVRLVTRPGNVE-GSGEVTM 89 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCccccCCCCCCEEEEEEecCCCC-CCCccCH
Confidence 34667789999999999999999999999999999 99999999875 23456666554321 0113455
Q ss_pred HHHHhc
Q 015952 167 YDTRSL 172 (397)
Q Consensus 167 ~eni~~ 172 (397)
.+.+..
T Consensus 90 ~~~l~~ 95 (186)
T cd01130 90 ADLLRS 95 (186)
T ss_pred HHHHHH
Confidence 555543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=90.56 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHHHHcCCC---CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEE
Q 015952 201 SDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 277 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIiv 277 (397)
..+|.|++|.+.++.+|...+ .+++ +|||. ..|.+.... ..++.+.+.. ..+.-||++
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~ill--------iDEpE--~~LHp~~q~--~l~~~l~~~~-------~~~~Qviit 295 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILL--------IDEPE--NHLHPSWQR--KLIELLKELS-------KKNIQVIIT 295 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEE--------EESSS--TTSSHHHHH--HHHHHHHHTG-------GGSSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEE--------ecCCc--CCCCHHHHH--HHHHHHHhhC-------ccCCEEEEe
Confidence 445999999999998888877 7894 45555 677754432 2333333221 146789999
Q ss_pred ech
Q 015952 278 THG 280 (397)
Q Consensus 278 TH~ 280 (397)
||.
T Consensus 296 THS 298 (303)
T PF13304_consen 296 THS 298 (303)
T ss_dssp ES-
T ss_pred Ccc
Confidence 995
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-08 Score=112.62 Aligned_cols=80 Identities=11% Similarity=-0.050 Sum_probs=58.1
Q ss_pred ccCCCCCChHHHHHHHHHHHHcC----------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcc
Q 015952 197 VIRRSDSSSLRNRMRCKAHKIGC----------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 266 (397)
Q Consensus 197 ~~~~~~lSGGqkQRvaIArAL~~----------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~ 266 (397)
...+..|||||++||+||+||+. +|++|++||| + ++||+.... .+++.+.++
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp--------~--~~LD~~~~~--~~~~~l~~l------ 1006 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEG--------F--GSLDEDSLD--RAIGILDAI------ 1006 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCC--------C--CCCCHHHHH--HHHHHHHHH------
Confidence 34567889999999999999986 7999955555 4 666644332 234444443
Q ss_pred cccCCceEEEEec--hhHHccccEEEEEeeCC
Q 015952 267 SFRDDKPVVVVTH--GDLLSLTDRARIRTYLG 296 (397)
Q Consensus 267 ~~~~g~TVIivTH--~~~~~~aDrI~v~l~~G 296 (397)
...|++|+|||| +....+||+|. +++.|
T Consensus 1007 -~~~g~~i~iisH~~~~~~~~~~~i~-v~~~~ 1036 (1042)
T TIGR00618 1007 -REGSKMIGIISHVPEFRERIPHRIL-VKKTN 1036 (1042)
T ss_pred -HhCCCEEEEEeCcHHHHHhhCCEEE-EEECC
Confidence 136899999999 38899999995 57643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-08 Score=107.64 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCCCCChHHHHHHHH------HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC-
Q 015952 199 RRSDSSSLRNRMRCK------AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD- 271 (397)
Q Consensus 199 ~~~~lSGGqkQRvaI------ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g- 271 (397)
.+..+||||+||++| ||+++.+|+++ +||||| ++||+.... ...+.+...+ ....+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~l--------ilDEpt--~~lD~~~~~--~l~~~l~~~~-----~~~~~~ 860 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLL--------IMDEPT--AFLDEDRRT--NLKDIIEYSL-----KDSSDI 860 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeE--------EEeCCC--CcCCHHHHH--HHHHHHHHHH-----HhcCCC
Confidence 467789999999975 59999999999 555556 666644322 2333333221 11123
Q ss_pred ceEEEEech-hHHccccEEEEEee
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
.|||+|||+ .....||+++ .+.
T Consensus 861 ~~ii~ish~~~~~~~~d~ii-~~~ 883 (895)
T PRK01156 861 PQVIMISHHRELLSVADVAY-EVK 883 (895)
T ss_pred CeEEEEECchHHHHhcCeEE-EEE
Confidence 489999995 6668999995 455
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-08 Score=109.54 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=52.7
Q ss_pred cCCCCCChHHHH------HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 198 IRRSDSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 198 ~~~~~lSGGqkQ------RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
..+..+||||+| |+|||++++.+|+++++||| | ++||+.... ...+.+..+ ...+
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp--------~--~~lD~~~~~--~l~~~l~~~-------~~~~ 844 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEP--------T--PFLDEERRR--KLVDIMERY-------LRKI 844 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCC--------C--cccCHHHHH--HHHHHHHHH-------HhcC
Confidence 345678999999 56666788999999955555 4 566643332 233333332 1346
Q ss_pred ceEEEEech-hHHccccEEEEEee
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
.+||+|||+ .+...||+++ +|.
T Consensus 845 ~~iiiith~~~~~~~~d~~~-~l~ 867 (880)
T PRK03918 845 PQVIIVSHDEELKDAADYVI-RVS 867 (880)
T ss_pred CEEEEEECCHHHHHhCCeEE-EEE
Confidence 799999995 7778999994 576
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.3e-08 Score=101.02 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=54.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------------------eCcEEEEec
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------------------VGDGTYFLQ 153 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------------------~~~ig~v~Q 153 (397)
++++ |+|.+|++++|+|+||||||||+++|+|+.. ++.+.+-..|. +..+++++|
T Consensus 146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 146 INGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 9999 9999999999999999999999999999998 76533322232 235788888
Q ss_pred CCCCCCCCCCccHHHHHh
Q 015952 154 EYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 154 ~~~l~~~~~~ltv~eni~ 171 (397)
+...+. .+++.++..
T Consensus 220 d~s~~~---rl~a~e~a~ 234 (434)
T PRK07196 220 DESPLM---RIKATELCH 234 (434)
T ss_pred CCChhh---hHHHHHHHH
Confidence 876655 467777653
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=87.94 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|+||+||||||+++.+.+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999888876
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=96.52 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccccccc---CCCCeEEEEeEEEEECCCceEeeccCce-----------eeeEEEcCCcEEEEECCCCC
Q 015952 49 RRDAVFREVLQSYDQLRT---RIGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKGS 114 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~---~~~~~lel~nvs~~Y~~~~~v~~~~~L~-----------~isl~I~~Ge~vaLvGpnGs 114 (397)
++.+|+.++++..+.... ....-++++||++.|++...+ |+ |+++.|.+|+.++|+||+||
T Consensus 105 ~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~-----Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~ 179 (415)
T TIGR00767 105 KEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLR-----LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKA 179 (415)
T ss_pred ccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccce-----eecCccccceeeeeeEEEeCCCCEEEEECCCCC
Confidence 347789999887665322 133468999999999765434 86 99999999999999999999
Q ss_pred cHHHHHHHHHcccC
Q 015952 115 GKSSLVNRISKVFE 128 (397)
Q Consensus 115 GKSTLl~~I~Gl~~ 128 (397)
|||||++.|+..+.
T Consensus 180 GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 180 GKTVLLQKIAQAIT 193 (415)
T ss_pred ChhHHHHHHHHhhc
Confidence 99999999999876
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.2e-07 Score=93.52 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=41.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++ |.+.+|+.++|+|+||||||||+++|+|+.. ++.|.+...|.
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~ 199 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGE 199 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEee
Confidence 8889 9999999999999999999999999999998 88877666554
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-07 Score=83.68 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=83.1
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHHHHH-cccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHH
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR 170 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni 170 (397)
|+.+ .=-+++|.++.|.|++|||||||...++ +... ..+ ++.|+..+... ..+.+++
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~---------~~~y~~~e~~~------~~~~~~~ 72 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK------QGK---------KVYVITTENTS------KSYLKQM 72 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh------CCC---------EEEEEEcCCCH------HHHHHHH
Confidence 4443 3368999999999999999999999874 3333 112 34444433211 1222222
Q ss_pred -hcCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcC--CCCeEeeccccccccchhhhhcccccc
Q 015952 171 -SLSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGC--EPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 171 -~~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~--~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
.++.... +...+ ..+.+ ..........|.++++.+..++.++. +|+++ ++|||| ..++..
T Consensus 73 ~~~g~~~~----~~~~~--g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~i--------viDs~t--~~~~~~ 136 (234)
T PRK06067 73 ESVKIDIS----DFFLW--GYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVI--------IIDSLT--IFATYA 136 (234)
T ss_pred HHCCCChh----HHHhC--CCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEE--------EEecHH--HHHhcC
Confidence 1211100 00000 00111 00011122347889999999999997 89999 556666 223322
Q ss_pred chh-hhHHHHHHHHhcCCCcccccCCceEEEEech--h-------HHccccEEEEEeeC
Q 015952 247 SDV-EKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--D-------LLSLTDRARIRTYL 295 (397)
Q Consensus 247 ~~~-~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~-------~~~~aDrI~v~l~~ 295 (397)
... ....+..+..+ .+.|.|+++++|. . +..++|-+ +.|+.
T Consensus 137 ~~~~~~~~l~~l~~l-------~~~g~tvllt~~~~~~~~~~~~~~~~l~Dgv-I~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNL-------VDLGKTILITLHPYAFSEELLSRIRSICDVY-LKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHH-------HhCCCEEEEEecCCcCCHHHHHHHHhheEEE-EEEEe
Confidence 221 11122222221 2468899999993 2 45666766 45653
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=110.01 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=49.4
Q ss_pred ccCCCCCChHHHH------HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC
Q 015952 197 VIRRSDSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD 270 (397)
Q Consensus 197 ~~~~~~lSGGqkQ------RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~ 270 (397)
...+..+||||+| |++||||++.+|++|+|||| | ++||..... .....+.++... .....
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEP--------t--~~lD~~~~~--~l~~~l~~~~~~--~~~~~ 1259 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEP--------T--TNLDRENIE--SLAHALVEIIKS--RSQQR 1259 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCC--------c--ccCCHHHHH--HHHHHHHHHHHh--hhhcc
Confidence 3345689999999 99999999999999955555 5 566644332 223334333200 00124
Q ss_pred CceEEEEech--hHHccc
Q 015952 271 DKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 271 g~TVIivTH~--~~~~~a 286 (397)
|.|||+|||+ ++..+|
T Consensus 1260 ~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1260 NFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred CCeEEEEecCHHHHHHHh
Confidence 8899999994 555554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-07 Score=87.84 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=57.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCC----CChhhH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD----DASDNI 180 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~----~~~~~~ 180 (397)
+++|+||||||||||+++|.+++. . |. +.++.++..... +...+...... ......
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~--~~---------~~v~~~D~~~~~----~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----N--PK---------VVIISQDSYYKD----LSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----C--CC---------eEEEEecccccc----cccccHHHhccCCCCCCCccc
Confidence 489999999999999999999874 1 22 334444422111 11111111100 011111
Q ss_pred HHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 181 NMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 181 ~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+...+.+..+..+ ....+..+.|.|++++..+ .+..|+++++|.|
T Consensus 61 ~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~ 107 (198)
T cd02023 61 FDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGI 107 (198)
T ss_pred HHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEech
Confidence 22334566666663 3344456778888876655 5778999955554
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-07 Score=89.61 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHH
Q 015952 103 TTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
|.+..|+||.|+|||||+-.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999998885
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=72.65 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc-cEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~-G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
++..+.|+||+||||||+++.|+..+. ... +-+.++.... ... ...+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~-----~~~~~~~~~~~~~~----------~~~-----~~~~~~---------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-----PPGGGVIYIDGEDI----------LEE-----VLDQLL---------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC-----CCCCCEEEECCEEc----------ccc-----CHHHHH----------
Confidence 367899999999999999999999887 433 3333333210 000 000000
Q ss_pred HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 181 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
...........++++..+..+++|-...|.++++||+
T Consensus 51 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 51 ------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred ------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 0001222445688889999999999988999966665
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-07 Score=105.44 Aligned_cols=74 Identities=7% Similarity=-0.076 Sum_probs=53.4
Q ss_pred cCCCCCChHHHHHHHHHHHHcC--------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 198 IRRSDSSSLRNRMRCKAHKIGC--------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~~--------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
..+..|||||+|+++||+||+. +|++|++||| + ++||+.... .+++.+..+ ..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp--------~--~~lD~~~~~--~~~~~l~~l-------~~ 1005 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEG--------F--GTLDSETLD--TALDALDAL-------NA 1005 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCC--------C--CcCCHHHHH--HHHHHHHHH-------HH
Confidence 5578899999999999999996 8999955555 4 666644333 233444333 24
Q ss_pred CCceEEEEech--hHHccccEEE
Q 015952 270 DDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 270 ~g~TVIivTH~--~~~~~aDrI~ 290 (397)
.|+||+||||. ...++..+|.
T Consensus 1006 ~g~~v~iisH~~~l~~~i~~qi~ 1028 (1047)
T PRK10246 1006 SGKTIGVISHVEAMKERIPVQIK 1028 (1047)
T ss_pred CCCEEEEEecHHHHHHhccceEE
Confidence 69999999993 6667777774
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-07 Score=106.51 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=51.1
Q ss_pred cCCCCCChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 198 IRRSDSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
.++..|||||+||++||++++ ..|+++++||| + ++||+.... .+...+..+ ..+.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~--------~--~~ld~~~~~--~~~~~~~~~--------~~~~~ 1144 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEV--------D--APLDDANVE--RFANLLKEF--------SKNTQ 1144 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCc--------c--ccccHHHHH--HHHHHHHHh--------ccCCE
Confidence 456788999999999999984 67799955555 4 666643322 233333332 23578
Q ss_pred EEEEech-hHHccccEEEE
Q 015952 274 VVVVTHG-DLLSLTDRARI 291 (397)
Q Consensus 274 VIivTH~-~~~~~aDrI~v 291 (397)
+|||||+ ....+||+++.
T Consensus 1145 ~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1145 FIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred EEEEEcChhHHHHhhhHee
Confidence 9999995 55678999953
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.5e-07 Score=84.74 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=26.2
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
|+.+ .=-+++|++++|.||+|||||||...++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 4443 3468999999999999999999988654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=95.59 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=26.4
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+||.+.....+.|+||+|||||||++.|+..+.
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~ 481 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFR 481 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 455444444799999999999999999988765
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-07 Score=94.86 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=66.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------------eCcEEEE-----
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------------VGDGTYF----- 151 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------------~~~ig~v----- 151 (397)
++++ |++.+|+.++|+|+||||||||+++|+|+.+. .+.|.|.+.|+ ..+.+++
T Consensus 155 ID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 155 IDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred Eecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 8887 99999999999999999999999999998850 34466766553 1235666
Q ss_pred ecCCCCC--CCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCC
Q 015952 152 LQEYTIP--RGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRH 193 (397)
Q Consensus 152 ~Q~~~l~--~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl 193 (397)
+|++..- ......++.|.+..... ...+...++.++++.+++
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 8887431 10123456665543222 123455677789999998
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=79.28 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=45.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
...|.|+-=.--+.+.+-. --|. +||||. ++|.+.-+ ...+.++.++ .+.|.-+||+||.
T Consensus 128 h~~SHGEsf~~i~~~rf~~-~GiY--------iLDEPE--a~LSp~RQ--lella~l~~l-------a~sGaQ~IiATHS 187 (233)
T COG3910 128 HHMSHGESFLAIFHNRFNG-QGIY--------ILDEPE--AALSPSRQ--LELLAILRDL-------ADSGAQIIIATHS 187 (233)
T ss_pred hhhccchHHHHHHHHHhcc-CceE--------EecCcc--ccCCHHHH--HHHHHHHHHH-------HhcCCeEEEEecC
Confidence 3349999776666666654 4577 555555 77775443 3455555554 3578889999996
Q ss_pred -hHHccc-cEEEEEeeCC
Q 015952 281 -DLLSLT-DRARIRTYLG 296 (397)
Q Consensus 281 -~~~~~a-DrI~v~l~~G 296 (397)
.+..+- -+| ..++.+
T Consensus 188 PiLlAiP~A~I-~~~~~~ 204 (233)
T COG3910 188 PILLAIPGAEI-YEISES 204 (233)
T ss_pred hhheeCCCcEE-EEEecC
Confidence 444433 344 345443
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-08 Score=106.68 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=33.2
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHHHH--HcccCCCCCCCcccEEEECc
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~~I--~Gl~~~~~~~p~~G~I~i~G 143 (397)
|+.+ .=-+++|.++.|.||+|||||||...+ .|+.+ ..+.-+++..
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~ 58 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTF 58 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEE
Confidence 5544 235899999999999999999999976 56655 3344455443
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-07 Score=84.51 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=30.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+|++++|+|+||||||||+++|+|++. + +.++|.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd 35 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGD 35 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCc
Confidence 599999999999999999999999998 6 466664
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.6e-07 Score=92.22 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=50.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc---cEEEECce--------------eCcEEEEecCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSS--------------VGDGTYFLQEY 155 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~---G~I~i~G~--------------~~~ig~v~Q~~ 155 (397)
++++ +++.+|++++|+|+||||||||+++|+++.. ++. |.|..+|. ..++++|+...
T Consensus 142 id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 142 IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 9999 9999999999999999999999999999988 665 88877776 14677887665
Q ss_pred CC
Q 015952 156 TI 157 (397)
Q Consensus 156 ~l 157 (397)
+-
T Consensus 216 d~ 217 (428)
T PRK08149 216 DF 217 (428)
T ss_pred CC
Confidence 43
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.3e-07 Score=92.47 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=55.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+.++.++++..|..+- .+ ++++ |++.+|+.++|+|+||+|||||+++|+|+.. ++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi--~a---ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGI--RA---IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCc--ee---eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECC
Confidence 4577888888886554 33 8999 9999999999999999999999999999999 99888877776
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-07 Score=91.88 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=53.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------eCcEEEEecCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------VGDGTYFLQEYTIPR 159 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~ 159 (397)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++. ...+++++|...++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSKGRHTTTHRELHPLPSGGLLID 253 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCCCcchhhhccEEEecCCCeecC
Confidence 555666788999999999999999999999999999 99999999764 356888998876664
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-06 Score=100.66 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=51.4
Q ss_pred CCCCCChHHHHHHHHHHHHcC----CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 199 RRSDSSSLRNRMRCKAHKIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
++..||||||++++||++|+. .|++++| |||+ ++||+.... .+.+.+.++ ..+.++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~l--------DE~~--~~ld~~~~~--~~~~~l~~~--------~~~~~~ 1130 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAF--------DEVD--MFLDGVNVE--RVAKLIREK--------AGEAQF 1130 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEe--------cccc--cccCHHHHH--HHHHHHHHh--------cCCCeE
Confidence 355789999999999999984 6799955 5545 666644333 233344332 345679
Q ss_pred EEEech-hHHccccEEEE
Q 015952 275 VVVTHG-DLLSLTDRARI 291 (397)
Q Consensus 275 IivTH~-~~~~~aDrI~v 291 (397)
|+|||+ .+..+||+++.
T Consensus 1131 i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1131 IVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred EEEECcHHHHHhcceeEe
Confidence 999995 77789999953
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-07 Score=85.44 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999987
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.5e-07 Score=81.93 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=24.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|++++|+||||||||||+++|+++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999887
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=86.54 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=46.8
Q ss_pred EEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 77 KILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 77 vs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++..|..+- .+ ++++ +.+.+|++++|+|+||||||||+++|+|+.. |+.|.+..-|.
T Consensus 49 ~~~~l~tGi--~a---iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGe 105 (326)
T cd01136 49 IDEVLPTGV--RA---IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGE 105 (326)
T ss_pred ceeEcCCCc--EE---Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEec
Confidence 334554443 33 8889 9999999999999999999999999999999 88877766554
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-06 Score=96.29 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=36.7
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
++++.+++++++|+|++|+|||||++.+.+-+.. ..+|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeec
Confidence 5778889999999999999999999999655441 5688888865
|
syringae 6; Provisional |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=9e-07 Score=67.24 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.1
Q ss_pred ceeeeEEEcC-CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~-Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++-++++.+ |.++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4446677775 57999999999999999999987776
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-06 Score=87.38 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=50.1
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.++-+.++..|..+- .+ ++.+ |.+.+|++++|+|+||+|||||+++|+++.. |+.+.+...|.
T Consensus 111 ~~~R~~~~~~~~tGi--~~---id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGe 173 (411)
T TIGR03496 111 PLKRAPIDEPLDVGV--RA---INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGE 173 (411)
T ss_pred HHhccCcceEeeeeE--Ee---ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEec
Confidence 445556667775443 33 8888 9999999999999999999999999999999 87766655554
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.1e-06 Score=83.59 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++..+.|.||+||||||+++.+.+.+.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4678999999999999999999998665
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=89.65 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=48.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc---cEEEECce-------------eCcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSS-------------VGDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~---G~I~i~G~-------------~~~ig~v~Q~~~ 156 (397)
++.+ |++.+|++++|+|+||||||||+++|+|+.+ |+. |.|-++|. ....++|+|++.
T Consensus 166 ID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 166 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4444 9999999999999999999999999999998 774 88888886 245778888754
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=88.08 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=43.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++ |.+.+|+.++|+|+||||||||+++|+|... |+.|.+...|.
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~ 181 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGE 181 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEcc
Confidence 8999 9999999999999999999999999999999 99999887655
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-06 Score=94.97 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=76.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
=+|++|+ +.+.++.|.|||++||||+||.++-..- -..- ..|||-+.. .+.+.|.+
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i----lAq~-----------G~~VPa~~a------~i~~~d~I-- 653 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL----LAQI-----------GSFVPAESA------RIGIVDRI-- 653 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH----HHhc-----------CCceeccce------EecccCee--
Confidence 5677787 6778999999999999999999864321 0000 123332211 11222221
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcC--CCCeEeeccccccccchh---hhhccccccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC--EPSVIRKVNFVIFVVDGL---AVLKSMEGDS 247 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~--~P~iLllDEP~~siLDEp---T~~s~LD~~~ 247 (397)
+.++|-. ..-...+|-=+.....++++|-. ++.++ ++||| | +.+| ..
T Consensus 654 ---------------~triga~--d~i~~g~STF~~E~~~~~~il~~at~~sLv--------llDE~GrGT--s~~d-g~ 705 (854)
T PRK05399 654 ---------------FTRIGAS--DDLASGRSTFMVEMTETANILNNATERSLV--------LLDEIGRGT--STYD-GL 705 (854)
T ss_pred ---------------eeccCcc--cccccCcccHHHHHHHHHHHHHhCCCCcEE--------EEecCCCCC--Ccch-hH
Confidence 1122321 11133456666677777777655 89999 77777 5 5555 11
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccE
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDR 288 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDr 288 (397)
.....+.+.+ ....+.++|++|| .++..++++
T Consensus 706 ----aia~aile~l-----~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 706 ----SIAWAVAEYL-----HDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred ----HHHHHHHHHH-----HhcCCceEEEEechHHHHHHhhh
Confidence 1222222221 1123678999999 477677765
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-06 Score=94.95 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCCCChHHHH------HHHHHHHHcCC-----C-CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc
Q 015952 200 RSDSSSLRNR------MRCKAHKIGCE-----P-SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS 267 (397)
Q Consensus 200 ~~~lSGGqkQ------RvaIArAL~~~-----P-~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~ 267 (397)
+..||||||| |+|+|++++.+ | +++ ++|||| +++|+.... .+...+..+
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~--------ilDEp~--~~lD~~~~~--~~~~~l~~~------- 839 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPL--------ILDEPT--VFLDSGHVS--QLVDLVESM------- 839 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCce--------EecCCc--ccCCHHHHH--HHHHHHHHH-------
Confidence 5678999999 99999999864 2 568 555556 667644332 233333332
Q ss_pred ccCC-ceEEEEech-hHHccccEEEEEeeC
Q 015952 268 FRDD-KPVVVVTHG-DLLSLTDRARIRTYL 295 (397)
Q Consensus 268 ~~~g-~TVIivTH~-~~~~~aDrI~v~l~~ 295 (397)
...| .+||+|||+ .....||+++ .+..
T Consensus 840 ~~~~~~qviiish~~~~~~~ad~~~-~~~~ 868 (880)
T PRK02224 840 RRLGVEQIVVVSHDDELVGAADDLV-RVEK 868 (880)
T ss_pred HhcCCCeEEEEECChHHHHhcCeeE-Eeec
Confidence 1234 479999995 5557899994 5653
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-06 Score=75.06 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|++++|+||||||||||++.|++++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999876
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-06 Score=88.20 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=43.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++ +.+.+|++++|+|+||+|||||+++|+|+.. ++.|.|.+.|+
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGe 199 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGE 199 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEcc
Confidence 8889 9999999999999999999999999999999 88898888776
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=80.96 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=31.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
.+..+++|.||||||||||+++|+++++ +.+|.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~~ 65 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELPA 65 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCce
Confidence 3457999999999999999999999999 8888843
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-06 Score=84.94 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=35.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++|++++++|||||||||++..|++.+. +..++|.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEec
Confidence 5789999999999999999999999999 88888987653
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-06 Score=89.70 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=53.0
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+.|+++.|+.. .+ ++++++.+..|+.++|+||||||||||+++|.|+++ |.+|++.+.+.
T Consensus 187 ~~d~~~v~Gq~-~~-----~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~ 246 (506)
T PRK09862 187 QHDLSDVIGQE-QG-----KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESA 246 (506)
T ss_pred ccCeEEEECcH-HH-----HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecc
Confidence 45888888532 23 788999999999999999999999999999999999 99999998875
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-06 Score=78.93 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.6e-06 Score=86.71 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=49.6
Q ss_pred EEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee
Q 015952 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (397)
Q Consensus 73 el~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~ 145 (397)
+-+.++.-+..+- .+ ++ .+|++.+|+.++|+|+||+|||||+++|+++.+ |+.|.|.+.|.+
T Consensus 116 ~R~~i~~~l~tGi--~a---iD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer 177 (418)
T TIGR03498 116 SRARVGEPLDTGV--RV---ID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGER 177 (418)
T ss_pred hccCcccccCCcc--EE---Ee-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeee
Confidence 3344455554343 22 65 699999999999999999999999999999999 999988887763
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.7e-06 Score=85.78 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=43.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++ +.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ge 173 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGE 173 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEcc
Confidence 8889 9999999999999999999999999999999 88888877775
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.5e-06 Score=95.51 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=49.0
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHH----HcccCCCCCCCc-ccEEEECce-
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI----SKVFENDKFASE-RAQVTYNSS- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I----~Gl~~~~~~~p~-~G~I~i~G~- 144 (397)
-|.++|+ .+|+++.. . -.-|+|. +| +++|+|||||||||++.+| .|..+ |. +|.+++.+.
T Consensus 5 kl~i~g~-rSf~~~~~--~---~~~I~F~--~~-~~~I~G~NGaGKTTil~ai~~al~G~~~-----~~~~g~~~i~~~~ 70 (1311)
T TIGR00606 5 KMSILGV-RSFGIEDK--D---KQIIDFF--SP-LTILVGPNGAGKTTIIECLKYICTGDFP-----PGTKGNTFVHDPK 70 (1311)
T ss_pred eeeeece-ecCCCccc--c---ceeeecc--cc-eEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCceEecCCC
Confidence 3678887 68853110 0 1114553 44 9999999999999999999 59988 75 788887653
Q ss_pred -------eCcEEEEecCC
Q 015952 145 -------VGDGTYFLQEY 155 (397)
Q Consensus 145 -------~~~ig~v~Q~~ 155 (397)
...|.++|++.
T Consensus 71 ~~~~~~~~a~V~l~F~~~ 88 (1311)
T TIGR00606 71 VAQETDVRAQIRLQFRDV 88 (1311)
T ss_pred cCccHhhhheeEEEEEcC
Confidence 24567777653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.1e-06 Score=86.13 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=40.2
Q ss_pred ceeeeEEE---cCCcE-----EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I---~~Ge~-----vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++++.+ ++|+. ++|+|+||||||||++.|.+++.+.. ...|.|.++|.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdf 139 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDF 139 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCc
Confidence 78888887 66776 99999999999999999999998211 13577777775
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.1e-06 Score=81.80 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i 141 (397)
.++||.||||||||||+++|.+++..- |++|.|.+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~---~~~g~V~v 97 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW---PEHRKVEL 97 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc---CCCCceEE
Confidence 489999999999999999999998621 45677655
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-06 Score=84.86 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=42.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~ 145 (397)
++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|.+
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGer 194 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGER 194 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCcc
Confidence 8889 9999999999999999999999999999888 788888877763
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=78.57 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=44.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Cce---------e-CcEEEEecCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSS---------V-GDGTYFLQEYTI 157 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~---------~-~~ig~v~Q~~~l 157 (397)
++.+...+. +++++++|+||+|||||+|.|.|... +..|+|.. .|. . ...|++.+.|.+
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~-----~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLD-----LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGF 223 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhh-----ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCC
Confidence 444445555 58999999999999999999999999 88998876 232 1 125677777765
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=83.03 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=41.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++.+ +.+.+|+.++|+|+||+|||||+++|+|..+ ++.|.+..-|.
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGe 193 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGE 193 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCC
Confidence 6666 9999999999999999999999999999998 88888876665
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=97.91 E-value=9e-06 Score=86.45 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=45.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---CcEEEEecCCCCCCCCCCccHHHHH
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---GDGTYFLQEYTIPRGSNSFSLYDTR 170 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---~~ig~v~Q~~~l~~~~~~ltv~eni 170 (397)
-+++|.||||||||||++.|++++ |..|.|.+||.. ..+++.||++..+. ..++.+++
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL------p~vgvIsmDdy~~~~~~i~~nfD~P~a~D---~d~L~enL 126 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM------PSIAVISMDNYNDSSRIIDGNFDDPRLTD---YDTLLDNI 126 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC------CCcEEEEEcceecchhhhCccCCChhhcc---hhHHHHHH
Confidence 599999999999999999999986 467999999873 24567778776654 34666665
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=74.68 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=93.6
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHH-cccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~ 176 (397)
+-|++| ++.|+|.+=-||||||++|. |.|. +. |-.|+=++= -++.... ....|-... .
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYn-Hi--pGDGRE~VV----------T~~~avk----irAEDGR~V---~ 298 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYN-HI--PGDGREFVV----------TDPDAVK----IRAEDGRSV---E 298 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccC-CC--CCCCceEEE----------ECCCceE----EEecCCceE---e
Confidence 678999 99999999999999999995 6665 33 655554431 1111000 001110000 1
Q ss_pred hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch--------
Q 015952 177 SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-------- 248 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~-------- 248 (397)
.-++..++..+....... .-.-.+-||-.-|=..|..||=...++| ++||-| ++-.....
T Consensus 299 ~vDISpFI~~LP~g~dT~--~FsT~~ASGSTSqAAnI~EAlE~Ga~~L--------LiDEDt--sATNfmiRD~rMq~Lv 366 (448)
T PF09818_consen 299 GVDISPFINNLPGGKDTT--CFSTENASGSTSQAANIMEALEAGARLL--------LIDEDT--SATNFMIRDERMQALV 366 (448)
T ss_pred CccchHHHhhCCCCCCCC--cccccCCCchHHHHHHHHHHHHcCCCEE--------EEcCcc--cchheeehhHHHHHhh
Confidence 112223333332211111 1112233999999999999999999999 666666 44432221
Q ss_pred ----h-hhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEeeCCE
Q 015952 249 ----V-EKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLGE 297 (397)
Q Consensus 249 ----~-~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~~G~ 297 (397)
+ .+-+.+.++++. .+.|.+.|+|+= .+....||+| ++|++=+
T Consensus 367 ~k~kEPITPfidrvr~l~------~~~GvStIlV~Ggsgdy~~vAD~V-i~Md~Y~ 415 (448)
T PF09818_consen 367 SKEKEPITPFIDRVRSLY------EKLGVSTILVVGGSGDYFDVADRV-IMMDEYR 415 (448)
T ss_pred ccCCCCcchHHHHHHHHH------HHcCceEEEEeccchhhHhhCCEE-EEecCcc
Confidence 1 112344444442 346888888877 4888999999 6788744
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=1e-05 Score=73.14 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++++++.+| +++|+||||+||||++.+|.-++.
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 67788888887 999999999999999999987665
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1e-05 Score=74.87 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECce
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS 144 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~ 144 (397)
++|.+++|+|+||||||||.+.|.+.+. +. .|.+.++|.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d 61 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGD 61 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCE
Confidence 6789999999999999999999999776 43 467888875
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=92.55 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=41.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+.+..|+|.+| +++|+|+|||||||+|++|++++. |+.|.+.+++.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~ 63 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNT 63 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCc
Confidence 56678888876 999999999999999999999999 88898888854
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-05 Score=82.82 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=33.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++ |.+.+|+.++|+|+||+|||||+++|+|+..
T Consensus 159 ID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 159 INGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 8889 9999999999999999999999999999887
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 1e-12
Identities = 67/440 (15%), Positives = 142/440 (32%), Gaps = 89/440 (20%)
Query: 3 GEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYD 62
E+ +F EE++ F + + + ++QR R ++ + Q +
Sbjct: 75 QEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDN-QVFA 127
Query: 63 QL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121
+ +R+ + +L P + + G+ GSGK+ +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNV-LIDGV------------------LGSGKTWVAL 168
Query: 122 RISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS-DDASDN 179
V + K + ++ + + E + D S D S N
Sbjct: 169 ---DVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 180 INMIKLWIMEGVRHGELVIRRSDSSSL------RNRMRCKAHKIGCEPSVIRKVNFVIFV 233
I + I +R L+ + + L +N A + C+ + + V
Sbjct: 223 IKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 234 VDGLAVLK-SMEGDSDV--EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL------S 284
+ S++ S + ++ +C D P V+T S
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAES 336
Query: 285 LTDR-ARIRTY-------LGELLG-----IPPA--KQIFD----IPESSD-PENELIIV- 323
+ D A + L ++ + PA +++FD P S+ P L ++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 324 -DMLRYCLEHADRNLSCKSCA--RNKGFRVSVMAFLNLLLVLGIAIIAFKMQH---LNAH 377
D+++ + L S + K +S+ ++ L L + + H ++ +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDHY 453
Query: 378 CIPKSNSNVDWRAIRHLWLD 397
IPK D + +LD
Sbjct: 454 NIPK---TFDSDDLIPPYLD 470
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-06
Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 128/374 (34%)
Query: 38 RDSWDSLVDQRRRDAVFREVLQSYD-QLR----TRIGSLTDAKNKILSYTPGAWIENVGG 92
+ ++ + +++ + TR +TD + + T + +
Sbjct: 251 LNVQNA------------KAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMT 297
Query: 93 MT-------LSDY------DVP---KTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFAS 134
+T L Y D+P TT+ + + K DK +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 135 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS---DNIN-----MIKLW 186
SS+ N + R + D S + + + +W
Sbjct: 358 -----IIESSL----------------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 187 ----------IMEGVRHGELVIRRSDSS-----SLRNRMRCKAHKIGCEPSVIRKVNFVI 231
++ + LV ++ S S+ ++ K E ++ R +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRSI---- 449
Query: 232 FVVDGLAVLKSMEGDS---DVEKQY--NQIV-----------ATTFNCPYLSF------- 268
VD + K+ + D QY + I T F +L F
Sbjct: 450 --VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 269 RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRY 328
R D + L +L ++ Y I D +DP+ E ++ +L +
Sbjct: 508 RHDSTAWNASGSILNTLQQ---LKFYK---------PYICD----NDPKYERLVNAILDF 551
Query: 329 CLEHADRNLSCKSC 342
+ + + K
Sbjct: 552 LPKIEENLICSKYT 565
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 106 LLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 163
+L++G G GKSS VN I +V F SE + + R +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-------------VMVSRSRAGFT 88
Query: 164 FSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSL 206
++ DT L + N +N+IK ++++ L + R D+ +
Sbjct: 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.98 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.89 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.89 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.86 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.85 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.84 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.83 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.8 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.76 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.75 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.73 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.73 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.73 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.72 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.72 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.71 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.71 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.7 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.69 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.68 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.66 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.65 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.64 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.64 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.64 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.63 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.62 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.61 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.6 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.59 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.59 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.58 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.55 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.54 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.52 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.52 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.49 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.48 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.48 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.47 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.46 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.45 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.45 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.44 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.44 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.43 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.43 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.42 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.41 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.36 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.34 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.34 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.32 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.29 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.29 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.28 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.22 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.22 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.18 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.11 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.1 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.1 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.1 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.09 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.07 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.07 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.03 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.02 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.02 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.01 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.0 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.99 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.96 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.94 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.93 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.92 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.85 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.81 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.79 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.75 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.74 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.74 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.71 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.7 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.68 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.64 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.49 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.48 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.47 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.47 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.46 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.42 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.41 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.39 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.37 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.36 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.27 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.2 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.15 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.14 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.09 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.08 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.07 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.05 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.0 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.99 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.97 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.96 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.93 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.92 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.92 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.87 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.87 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.85 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.84 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.84 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.84 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.84 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.83 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.81 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.81 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.8 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.74 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.73 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.72 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.69 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.63 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.58 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.56 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.54 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.54 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.53 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.51 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.5 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.5 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.49 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.47 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.47 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.47 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.44 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.44 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.43 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.41 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.34 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.33 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.3 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.25 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.22 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.19 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.18 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.18 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.13 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.13 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.11 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.03 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.02 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.01 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.99 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.98 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.97 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.94 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.92 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.9 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.89 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.87 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.85 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.82 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.82 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.81 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.79 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.76 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.73 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.71 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.68 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.67 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.66 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.65 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.64 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.64 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.63 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.62 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.6 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.58 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.58 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.55 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.53 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.52 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.52 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.5 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.49 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.48 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.48 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.47 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.45 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.45 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.45 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.44 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.44 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.43 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.43 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.43 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.43 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.42 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.42 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.42 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.39 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.38 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.37 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.36 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.35 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.35 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.34 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.33 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.33 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.32 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.31 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.31 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.3 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.3 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.28 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.26 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.26 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.25 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.25 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.24 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.24 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.24 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.23 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.2 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.2 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.19 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.19 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.18 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.17 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.17 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.16 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.16 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.16 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.16 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.16 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.14 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.14 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.13 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.13 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.11 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.1 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.1 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.1 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.1 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.09 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.09 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.09 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.08 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.06 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.05 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.04 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.04 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.04 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.04 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.03 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.02 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.02 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.02 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.02 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.01 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.01 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.01 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.01 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.99 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.99 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.99 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.98 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.96 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.96 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.95 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.93 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.93 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.91 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.91 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.89 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.89 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.88 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.87 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.86 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.86 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.85 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.85 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.83 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.83 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.83 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.83 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.81 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.79 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.77 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.77 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.76 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.75 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.73 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.72 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.72 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.72 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.71 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.7 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.7 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.67 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.67 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.67 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.66 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.66 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.66 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.65 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.65 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.63 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.61 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.6 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.6 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.6 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.58 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.58 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.57 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.55 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.55 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.53 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.53 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.53 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.52 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.52 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.51 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.48 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.47 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.45 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.45 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.44 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.44 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.44 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.41 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.4 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.38 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.37 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.35 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.35 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.34 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.33 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.32 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.3 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.29 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.27 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.25 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.23 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.23 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.22 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.21 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.21 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.19 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.18 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.17 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.17 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.15 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.14 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.14 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.1 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.1 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.09 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.09 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.07 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.06 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.06 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.97 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.94 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.93 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.92 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.88 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.82 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.68 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.64 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.6 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.6 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.54 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.53 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.51 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.46 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.38 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.33 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.31 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.32 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.21 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.2 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.18 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.17 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.16 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.09 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.04 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.01 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.99 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.97 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.95 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.95 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.93 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.89 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.89 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.85 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.79 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.78 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 93.66 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.65 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 93.65 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.64 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.61 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.51 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.5 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 93.49 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 93.48 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 93.44 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.41 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.33 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.31 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.28 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-51 Score=407.33 Aligned_cols=216 Identities=16% Similarity=0.214 Sum_probs=180.3
Q ss_pred CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 68 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
.++||+++||+|+|+.+. .+.+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 457999999999996432 1233 999999999999999999999999999999999999 99999999997
Q ss_pred -----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 145 -----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 -----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
+++||||||++++++ .+||+||+.++.. ...+.++++.++++.+||. ...++|.+||||||
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~---~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqk 169 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLS---SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCT---TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHH
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 257999999999887 6899999998643 4556677899999999994 45778999999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|||+|||+ .+.++|
T Consensus 170 QRVaIArAL~~~P~lL--------LlDEPT--s~LD~~~~~--~i~~lL~~l~------~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 170 QRVAIARALASNPKVL--------LCDQAT--SALDPATTR--SILELLKDIN------RRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHTTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEE--------EEECCC--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEecCHHHHHHhC
Confidence 9999999999999999 555556 777755443 3444444431 2459999999995 788999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
||| ++|++|++++.|++++++..|.+
T Consensus 232 Drv-~vl~~G~iv~~g~~~ev~~~p~~ 257 (366)
T 3tui_C 232 DCV-AVISNGELIEQDTVSEVFSHPKT 257 (366)
T ss_dssp SEE-EEEETTEEEECCBHHHHHSSCCS
T ss_pred CEE-EEEECCEEEEEcCHHHHHhCCCc
Confidence 999 56999999999999999988764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=405.89 Aligned_cols=210 Identities=14% Similarity=0.188 Sum_probs=178.9
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+|+++||+|+|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 4 ~l~i~~ls~~y~-~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPV-----LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSKN 72 (359)
T ss_dssp CEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESSS
T ss_pred EEEEEeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECcccc
Confidence 799999999995 3334 999999999999999999999999999999999999 99999999996
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
++.||||||++.+++ ++||+||+.|+.. ...+.++++.++++.++|. ...++|.+|||||||||+|
T Consensus 73 ~~~~~~~r~ig~vfQ~~~l~p---~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 73 TNLPVRERRLGYLVQEGVLFP---HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CBCCGGGSCCEEECTTCCCCT---TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred cccchhhCCEEEEeCCCcCCC---CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 257999999999987 7999999999865 3456677899999999994 4577899999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|+|+|||| ++..+|||| +
T Consensus 150 ArAL~~~P~lL--------LLDEPt--s~LD~~~r~--~l~~~l~~~~------~~~g~tvi~vTHd~~ea~~~aDri-~ 210 (359)
T 3fvq_A 150 ARALAPDPELI--------LLDEPF--SALDEQLRR--QIREDMIAAL------RANGKSAVFVSHDREEALQYADRI-A 210 (359)
T ss_dssp HHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHTTCEEEEECCCHHHHHHHCSEE-E
T ss_pred HHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHHCCEE-E
Confidence 99999999999 555555 777765544 2333343331 2469999999995 889999999 5
Q ss_pred EeeCCEEeeeCCcccccCCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|++|++++.|++++++..|..
T Consensus 211 vl~~G~i~~~g~~~el~~~p~~ 232 (359)
T 3fvq_A 211 VMKQGRILQTASPHELYRQPAD 232 (359)
T ss_dssp EEETTEEEEEECHHHHHHSCSC
T ss_pred EEECCEEEEEeCHHHHHhCccc
Confidence 6999999999999999988753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-51 Score=408.93 Aligned_cols=212 Identities=16% Similarity=0.214 Sum_probs=180.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~l~~~~l~~~yg-~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 1 MASVQLQNVTKAWG-EVVV-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND 69 (381)
T ss_dssp -CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred CCEEEEEeEEEEEC-CEEE-----EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC
Confidence 45799999999995 3334 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++. ...++|.+|||||||||+|||
T Consensus 70 ~~~~~r~ig~VfQ~~~l~p---~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 70 TPPAERGVGMVFQSYALYP---HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp CCGGGSCEEEECTTCCCCT---TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CCHHHCCEEEEecCCcCCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHH
Confidence 367999999999987 7999999999754 4556678899999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 147 AL~~~P~lL--------LLDEPt--s~LD~~~~~--~l~~~l~~l~------~~~g~tii~vTHd~~ea~~~aDri-~vl 207 (381)
T 3rlf_A 147 TLVAEPSVF--------LLDEPL--SNLDAALRV--QMRIEISRLH------KRLGRTMIYVTHDQVEAMTLADKI-VVL 207 (381)
T ss_dssp HHHHCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHHCCEEEEECSCHHHHHHHCSEE-EEE
T ss_pred HHHcCCCEE--------EEECCC--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEECCHHHHHHhCCEE-EEE
Confidence 999999999 555555 777755444 3445554431 2359999999995 889999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++++.|++++++..|.+
T Consensus 208 ~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 208 DAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp ETTEEEEEECHHHHHHCCSB
T ss_pred ECCEEEEEeCHHHHHhCCcc
Confidence 99999999999999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-49 Score=372.82 Aligned_cols=208 Identities=18% Similarity=0.223 Sum_probs=167.6
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
||+++||+|+|+.+. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999996432 1123 999999999999999999999999999999999999 999999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCcc-c-ccCCCCCChH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGE-L-VIRRSDSSSL 206 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~-~-~~~~~~lSGG 206 (397)
+.||||||++.+++ .+||+||+.++.. ...+..+++.++++.+++.+ . .+++.+||||
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIP---LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGG 149 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCT---TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHH
T ss_pred CHHHHHHHhhccEEEEecCCccCC---CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHH
Confidence 25999999998877 6899999987521 34455677889999999954 3 6778999999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSL 285 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~ 285 (397)
|||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||+ .+..+
T Consensus 150 q~QRv~iAral~~~p~ll--------llDEPt--s~LD~~~~~--~i~~~l~~l~------~~~g~tvi~vtHd~~~~~~ 211 (235)
T 3tif_A 150 QQQRVAIARALANNPPII--------LADQPT--WALDSKTGE--KIMQLLKKLN------EEDGKTVVVVTHDINVARF 211 (235)
T ss_dssp HHHHHHHHHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHHCCEEEEECSCHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEcCCHHHHHh
Confidence 999999999999999999 555556 777755443 3444444431 2348999999996 56789
Q ss_pred ccEEEEEeeCCEEeeeCCccccc
Q 015952 286 TDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
|||| ++|++|++++.++++++.
T Consensus 212 ~d~i-~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 212 GERI-IYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp SSEE-EEEETTEEEEEEECC---
T ss_pred CCEE-EEEECCEEEEEcChhhhc
Confidence 9999 579999999998887653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=395.81 Aligned_cols=211 Identities=13% Similarity=0.194 Sum_probs=176.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 69 (359)
T 2yyz_A 1 MPSIRVVNLKKYFG-KVKA-----VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND 69 (359)
T ss_dssp -CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEEEEEEEEC-CEEE-----EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC
Confidence 34799999999995 3334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+++||||||++.+++ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 70 IPPKYREVGMVFQNYALYP---HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp SCGGGTTEEEECSSCCCCT---TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 357999999999887 7999999999764 1233456788999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++||| |||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 147 AL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~~~~~adri-~vl 207 (359)
T 2yyz_A 147 ALVKQPKVLLF--------DEPL--SNLDANLRM--IMRAEIKHLQ------QELGITSVYVTHDQAEAMTMASRI-AVF 207 (359)
T ss_dssp HHTTCCSEEEE--------ESTT--TTSCHHHHH--HHHHHHHHHH------HHHCCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred HHHcCCCEEEE--------ECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEcCCHHHHHHhCCEE-EEE
Confidence 99999999955 5555 777755544 3444444431 2348999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~ 312 (397)
++|++++.|++++++..|.
T Consensus 208 ~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 208 NQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp ETTEEEEEECHHHHHHSCS
T ss_pred ECCEEEEeCCHHHHHhCcc
Confidence 9999999999999998775
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=395.41 Aligned_cols=211 Identities=15% Similarity=0.213 Sum_probs=178.0
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 m~~l~~~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 69 (362)
T 2it1_A 1 MVEIKLENIVKKFGN-FTA-----LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE 69 (362)
T ss_dssp CCCEEEEEEEEESSS-SEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEEeEEEEECC-EEE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 347999999999953 335 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 70 LPPKDRNVGLVFQNWALYP---HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp SCGGGTTEEEECTTCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred CCHhHCcEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHH
Confidence 357999999999887 7999999998743 3445567889999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 147 AL~~~P~lL--------LLDEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adri-~vl 207 (362)
T 2it1_A 147 ALVKEPEVL--------LLDEPL--SNLDALLRL--EVRAELKRLQ------KELGITTVYVTHDQAEALAMADRI-AVI 207 (362)
T ss_dssp HHTTCCSEE--------EEESGG--GGSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred HHHcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEECCCHHHHHHhCCEE-EEE
Confidence 999999999 555555 777765544 3444444431 2348999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~ 312 (397)
++|++++.|++++++..|.
T Consensus 208 ~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 208 REGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp ETTEEEEEECHHHHHHSCS
T ss_pred ECCEEEEEcCHHHHHhCcc
Confidence 9999999999999998775
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-49 Score=381.44 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=172.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+|+|+++..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 6 ~~l~i~~ls~~y~~~~~~-----L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHA-----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEEEECTTSCEE-----EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCCS
T ss_pred cEEEEEEEEEEECCCCeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCcc
Confidence 489999999999654434 999999999999999999999999999999999999 999999999972
Q ss_pred --------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHH
Q 015952 146 --------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 --------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQR 210 (397)
+.||||||++. ++ .+||+||+.++.. ..++.++++.++++.+++.+ ..+++.+||||||||
T Consensus 76 ~~~~~~~~~~ig~v~Q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR 151 (275)
T 3gfo_A 76 RKGIMKLRESIGIVFQDPDNQLF----SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR 151 (275)
T ss_dssp HHHHHHHHHSEEEECSSGGGTCC----SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred cccHHHHhCcEEEEEcCcccccc----cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 36999999973 33 4799999988643 34556778899999999954 567789999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
|+|||||+.+|++| +||||| ++||+.... ...+.+.++ ..++|+|||+|||+ .+..+|||
T Consensus 152 v~iAraL~~~P~lL--------lLDEPt--s~LD~~~~~--~i~~~l~~l------~~~~g~tvi~vtHdl~~~~~~~dr 213 (275)
T 3gfo_A 152 VAIAGVLVMEPKVL--------ILDEPT--AGLDPMGVS--EIMKLLVEM------QKELGITIIIATHDIDIVPLYCDN 213 (275)
T ss_dssp HHHHHHHTTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHH------HHHHCCEEEEEESCCSSGGGGCSE
T ss_pred HHHHHHHHcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHH------HhhCCCEEEEEecCHHHHHHhCCE
Confidence 99999999999999 555556 777755443 334444443 11248999999995 78899999
Q ss_pred EEEEeeCCEEeeeCCcccccCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~ 310 (397)
| ++|++|++++.|++++++..
T Consensus 214 v-~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 214 V-FVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp E-EEEETTEEEEEECHHHHTHH
T ss_pred E-EEEECCEEEEECCHHHHhcC
Confidence 9 57999999999999998754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=395.33 Aligned_cols=211 Identities=17% Similarity=0.234 Sum_probs=173.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 9 M~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFG-NFTA-----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEEC-CEEE-----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 55799999999995 3334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+++||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 78 ~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 78 LPPKDRNISMVFQSYAVWP---HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp SCGGGGTEEEEEC---------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 257999999999887 7999999999864 3345567889999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++||| |||| ++||+.... ..++.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 155 AL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adri-~vl 215 (372)
T 1v43_A 155 AIVVEPDVLLM--------DEPL--SNLDAKLRV--AMRAEIKKLQ------QKLKVTTIYVTHDQVEAMTMGDRI-AVM 215 (372)
T ss_dssp HHTTCCSEEEE--------ESTT--TTSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred HHhcCCCEEEE--------cCCC--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 99999999955 5555 777755544 3444444431 2348999999995 888999999 569
Q ss_pred eCCEEeeeCCcccccCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~ 312 (397)
++|++++.|++++++..|.
T Consensus 216 ~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 216 NRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp ETTEEEEEECHHHHHHCCS
T ss_pred ECCEEEEeCCHHHHHhCcc
Confidence 9999999999999998775
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=391.25 Aligned_cols=211 Identities=13% Similarity=0.194 Sum_probs=178.4
Q ss_pred CCeEEEEeEEEEECCCce--EeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 69 GSLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~--v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
|.+|+++||+|+|++ .. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~l~i~~l~~~y~~-~~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 69 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKK-GKVVA-----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLV 69 (353)
T ss_dssp CCCEEEEEEEEEEGG-GTEEE-----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEE
T ss_pred CcEEEEEeEEEEECC-Eeeee-----EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEEC
Confidence 357999999999953 33 4 999999999999999999999999999999999999 99999999995
Q ss_pred -----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHH
Q 015952 145 -----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRN 208 (397)
Q Consensus 145 -----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqk 208 (397)
+++||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++.+ ..+++.+||||||
T Consensus 70 ~~~~~~~~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~ 146 (353)
T 1oxx_K 70 ASNGKLIVPPEDRKIGMVFQTWALYP---NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ 146 (353)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCT---TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred cccccccCChhhCCEEEEeCCCccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 246999999999887 7999999999754 23455678899999999954 5777899999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|
T Consensus 147 QRvalAraL~~~P~lL--------LLDEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 147 QRVALARALVKDPSLL--------LLDEPF--SNLDARMRD--SARALVKEVQ------SRLGVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp HHHHHHHHHTTCCSEE--------EEESTT--TTSCGGGHH--HHHHHHHHHH------HHHCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 555555 778866655 3444554431 2348999999995 888999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
||| ++|++|++++.|++++++..|.
T Consensus 209 dri-~vl~~G~i~~~g~~~~l~~~p~ 233 (353)
T 1oxx_K 209 DRV-GVLVKGKLVQVGKPEDLYDNPV 233 (353)
T ss_dssp SEE-EEEETTEEEEEECHHHHHHSCS
T ss_pred CEE-EEEECCEEEEEcCHHHHHhCcc
Confidence 999 5699999999999999998775
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=392.40 Aligned_cols=211 Identities=16% Similarity=0.190 Sum_probs=177.9
Q ss_pred CCeEEEEeEEEEE-CCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y-~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.++|+++||+|+| ++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 12 ~~~l~~~~l~~~y~g~-~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG-ARS-----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVT 80 (355)
T ss_dssp CEEEEEEEEEECCTTS-TTC-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT
T ss_pred CceEEEEEEEEEEcCC-CEE-----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECC
Confidence 4689999999999 53 334 999999999999999999999999999999999999 99999999997
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
++.||||||++.+++ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+|||||||||+||
T Consensus 81 ~~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 81 DLPPQKRNVGLVFQNYALFQ---HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp TCCGGGSSEEEECGGGCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cCChhhCcEEEEecCcccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 357999999999887 7999999998743 3445567889999999995 45778999999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++||| |||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++
T Consensus 158 rAL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adri-~v 218 (355)
T 1z47_A 158 RALAPRPQVLLF--------DEPF--AAIDTQIRR--ELRTFVRQVH------DEMGVTSVFVTHDQEEALEVADRV-LV 218 (355)
T ss_dssp HHHTTCCSEEEE--------ESTT--CCSSHHHHH--HHHHHHHHHH------HHHTCEEEEECSCHHHHHHHCSEE-EE
T ss_pred HHHHcCCCEEEE--------eCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEECCCHHHHHHhCCEE-EE
Confidence 999999999955 5555 777755444 3444444431 2348999999995 888999999 56
Q ss_pred eeCCEEeeeCCcccccCCCC
Q 015952 293 TYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~~ 312 (397)
|++|++++.|++++++..|.
T Consensus 219 l~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 219 LHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp EETTEEEEEECHHHHHHSCS
T ss_pred EECCEEEEEcCHHHHHhCcc
Confidence 99999999999999998775
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=392.77 Aligned_cols=210 Identities=16% Similarity=0.204 Sum_probs=176.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
.+|+++||+|+|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 2 ~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 2 AGVRLVDVWKVFG-EVTA-----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEEEET-TEEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEG
T ss_pred CEEEEEeEEEEEC-CEEE-----EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccc
Confidence 4799999999995 3334 999999999999999999999999999999999999 999999999952
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
++||||||++.+++ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+||||||||
T Consensus 71 ~~~~~~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 71 EKGIFVPPKDRDIAMVFQSYALYP---HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GGTEECCGGGSSEEEECSCCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHH
T ss_pred cccccCCHhHCCEEEEeCCCccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHH
Confidence 46999999999887 7999999998743 3445567889999999994 4577889999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
|+|||||+.+|++||| |||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||
T Consensus 148 valArAL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 148 VALGRAIVRKPQVFLM--------DEPL--SNLDAKLRV--RMRAELKKLQ------RQLGVTTIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp HHHHHHHHTCCSEEEE--------ECTT--TTSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHhcCCCEEEE--------CCCC--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEECCCHHHHHHhCCE
Confidence 9999999999999955 5555 777755544 3444444431 2348999999995 88899999
Q ss_pred EEEEeeCCEEeeeCCcccccCCCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
| ++|++|++++.|++++++..|.
T Consensus 210 i-~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 210 I-AVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp E-EEEETTEEEEEECHHHHHHSCS
T ss_pred E-EEEeCCEEEEeCCHHHHHhCcc
Confidence 9 5699999999999999998775
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=388.10 Aligned_cols=208 Identities=12% Similarity=0.180 Sum_probs=174.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
||+++||+|+|++ . + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 1 ml~~~~l~~~y~~-~-~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~ 68 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLS 68 (348)
T ss_dssp CEEEEEEEEECSS-C-E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSC
T ss_pred CEEEEEEEEEECC-E-E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCCCc
Confidence 5899999999953 3 5 999999999999999999999999999999999999 999999999972
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
++||||||++.+++ ++||+||+.|+... .... +++.++++.+++. ...+++.+|||||||||+|||||+.
T Consensus 69 ~~~r~ig~v~Q~~~l~~---~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 69 PEKHDIAFVYQNYSLFP---HMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp HHHHTCEEECTTCCCCT---TSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred hhhCcEEEEecCcccCC---CCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 47999999999887 79999999987531 1111 6788999999994 4577899999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+|++|||||| | ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++|++|+
T Consensus 145 ~P~lLLLDEP--------~--s~LD~~~~~--~l~~~l~~l~------~~~g~tii~vTHd~~~~~~~adri-~vl~~G~ 205 (348)
T 3d31_A 145 NPKILLLDEP--------L--SALDPRTQE--NAREMLSVLH------KKNKLTVLHITHDQTEARIMADRI-AVVMDGK 205 (348)
T ss_dssp CCSEEEEESS--------S--TTSCHHHHH--HHHHHHHHHH------HHTTCEEEEEESCHHHHHHHCSEE-EEESSSC
T ss_pred CCCEEEEECc--------c--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCE
Confidence 9999955555 5 777755444 3444444431 2358999999995 788999999 5699999
Q ss_pred EeeeCCcccccCCCCC
Q 015952 298 LLGIPPAKQIFDIPES 313 (397)
Q Consensus 298 iv~~g~~~el~~~~~~ 313 (397)
+++.|++++++..|..
T Consensus 206 i~~~g~~~~~~~~p~~ 221 (348)
T 3d31_A 206 LIQVGKPEEIFEKPVE 221 (348)
T ss_dssp EEEEECHHHHHSSCCT
T ss_pred EEEECCHHHHHhCccc
Confidence 9999999999988764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-48 Score=372.12 Aligned_cols=208 Identities=12% Similarity=0.104 Sum_probs=172.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++|+++||+++|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 9 ~~~l~~~~l~~~~~-~~~v-----L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQAL-----INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEET-TEEE-----EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeC-CeeE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 46899999999996 3335 999999999999999999999999999999999999 999999999972
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+.+||+||++.++. .+||+||+.++.. .....++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAr 154 (266)
T 4g1u_C 78 WQPKALARTRAVMRQYSELAF---PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLAR 154 (266)
T ss_dssp SCHHHHHHHEEEECSCCCCCS---CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHH
T ss_pred CCHHHHhheEEEEecCCccCC---CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 45999999988765 6899999998754 3344567788999999994 456678899999999999999
Q ss_pred HHcC------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 216 KIGC------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 216 AL~~------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+. +|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||| ++..+||
T Consensus 155 aL~~~~~~~~~p~lL--------llDEPt--s~LD~~~~~--~i~~~l~~l~------~~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 155 VLAQLWQPQPTPRWL--------FLDEPT--SALDLYHQQ--HTLRLLRQLT------RQEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp HHHHTCCSSCCCEEE--------EECCCC--SSCCHHHHH--HHHHHHHHHH------HHSSEEEEEECSCHHHHHHHCS
T ss_pred HHhcccccCCCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHHH------HcCCCEEEEEEcCHHHHHHhCC
Confidence 9999 99999 555555 677755443 3444444431 2356899999995 7888999
Q ss_pred EEEEEeeCCEEeeeCCcccccC
Q 015952 288 RARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~ 309 (397)
|| ++|++|++++.|++++++.
T Consensus 217 ~v-~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 217 RI-MLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp EE-EEEETTEEEEEECHHHHCC
T ss_pred EE-EEEECCEEEEEcCHHHHhC
Confidence 99 5799999999999998864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-48 Score=370.16 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=173.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+++|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 5 ~~l~i~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEV-----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 4799999999995 3334 999999999999999999999999999999999999 999999999952
Q ss_pred -------------------CcEEEEecCCCCCCCCCCccHHHHHhcCC---C--ChhhHHHHHHHHHHHCCCcc--cccC
Q 015952 146 -------------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD---D--ASDNINMIKLWIMEGVRHGE--LVIR 199 (397)
Q Consensus 146 -------------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~---~--~~~~~~~~~~~ll~~vgl~~--~~~~ 199 (397)
+.+|||||++.+++ .+||+||+.++. . ...+.++++.++++.+++.+ ..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 150 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS---HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY 150 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCC---CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC
Confidence 24999999988876 689999998842 1 23445567889999999954 5778
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||
T Consensus 151 ~~~LSgGq~qRv~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~~~~~l~~l-------~~~g~tvi~vtH 211 (262)
T 1b0u_A 151 PVHLSGGQQQRVSIARALAMEPDVL--------LFDEPT--SALDPELVG--EVLRIMQQL-------AEEGKTMVVVTH 211 (262)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHH-------HHTTCCEEEECS
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeC
Confidence 8999999999999999999999999 555556 777755443 344444443 134899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+ .+..+|||| ++|++|++++.|++++++..+.
T Consensus 212 d~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~~~~~ 245 (262)
T 1b0u_A 212 EMGFARHVSSHV-IFLHQGKIEEEGDPEQVFGNPQ 245 (262)
T ss_dssp CHHHHHHHCSEE-EEEETTEEEEEECHHHHHHSCC
T ss_pred CHHHHHHhCCEE-EEEECCEEEEeCCHHHHHhCcc
Confidence 5 778899999 5799999999999999886654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=369.00 Aligned_cols=209 Identities=14% Similarity=0.222 Sum_probs=173.1
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+++|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 23 ~~l~i~~l~~~y~-~~~v-----L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~~ 91 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEV-----LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLKAK 91 (263)
T ss_dssp CSEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESSST
T ss_pred heEEEEeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECCCc
Confidence 4799999999995 3335 999999999999999999999999999999999999 999999999963
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCC---C--ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD---D--ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~---~--~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+.||||||++.+++ .+||+||+.++. . ...+.++++.++++.+++. ...+++.+|||||||||
T Consensus 92 ~~~~~~~~~~i~~v~Q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 168 (263)
T 2olj_A 92 DTNLNKVREEVGMVFQRFNLFP---HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV 168 (263)
T ss_dssp TCCHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred cccHHHHhCcEEEEeCCCcCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH
Confidence 35999999988876 689999998842 1 2334456788999999994 45677889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ .+.++|||+
T Consensus 169 ~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~~~~~l~~l-------~~~g~tvi~vtHd~~~~~~~~d~v 229 (263)
T 2olj_A 169 AIARALAMEPKIM--------LFDEPT--SALDPEMVG--EVLSVMKQL-------ANEGMTMVVVTHEMGFAREVGDRV 229 (263)
T ss_dssp HHHHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCHHHHHHHCSEE
T ss_pred HHHHHHHCCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEcCCHHHHHHhCCEE
Confidence 9999999999999 555556 777755443 344444443 1348999999995 778899999
Q ss_pred EEEeeCCEEeeeCCcccccCCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|++++.|++++++..+.
T Consensus 230 -~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
T 2olj_A 230 -LFMDGGYIIEEGKPEDLFDRPQ 251 (263)
T ss_dssp -EEEETTEEEEEECHHHHHHSCC
T ss_pred -EEEECCEEEEECCHHHHHhCcc
Confidence 5799999999999999886653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-48 Score=364.54 Aligned_cols=207 Identities=13% Similarity=0.203 Sum_probs=170.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 4 ~~~l~~~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-IHA-----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECC-eeE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 358999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCC-C-cccccCCCCCChHHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVR-H-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vg-l-~~~~~~~~~lSGGqkQRva 212 (397)
+.+||+||++.+++ .+||+||+.++.. ...+..+.+.++++.++ + ....+++.+|||||||||+
T Consensus 73 ~~~~~~~~~~i~~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~ 149 (240)
T 1ji0_A 73 KPAHVINRMGIALVPEGRRIFP---ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCT---TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH
T ss_pred CCHHHHHhCCEEEEecCCccCC---CCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHH
Confidence 34999999998876 6899999998642 23345567788999995 8 4456778999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++|||+
T Consensus 150 lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~~-------~~~g~tvi~vtHd~~~~~~~~d~v- 209 (240)
T 1ji0_A 150 IGRALMSRPKLL--------MMDEPS--LGLAPILVS--EVFEVIQKI-------NQEGTTILLVEQNALGALKVAHYG- 209 (240)
T ss_dssp HHHHHTTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHH-------HHTTCCEEEEESCHHHHHHHCSEE-
T ss_pred HHHHHHcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCHHHHHHhCCEE-
Confidence 999999999999 555555 777754443 334444433 1368999999995 788999999
Q ss_pred EEeeCCEEeeeCCcccccC
Q 015952 291 IRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|+++..|++++++.
T Consensus 210 ~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 210 YVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEETTEEEEEEEHHHHHT
T ss_pred EEEECCEEEEEcCHHHHhc
Confidence 5799999999999888764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=360.68 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=164.7
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~y~~-~~~-----l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRG-YEI-----LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECC-Eee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 47999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
+.+||+||++.+++ .+||+||+.++.. ...+.++++.++++.+++. ...+++.+||||||||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 148 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIP---ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQR 148 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHH
T ss_pred CHHHHHHHHhCcEEEEecCcccCC---CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 35999999998876 6899999988532 2234456788999999994 4567788999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
|+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ ....+|||+
T Consensus 149 v~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~~~~~l~~l-------~~~g~tvi~vtHd~~~~~~~d~v 209 (224)
T 2pcj_A 149 VAIARALANEPILL--------FADEPT--GNLDSANTK--RVMDIFLKI-------NEGGTSIVMVTHERELAELTHRT 209 (224)
T ss_dssp HHHHHHTTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCHHHHTTSSEE
T ss_pred HHHHHHHHcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEcCCHHHHHhCCEE
Confidence 99999999999999 555556 777755443 334444433 1348999999996 334899999
Q ss_pred EEEeeCCEEeeeCC
Q 015952 290 RIRTYLGELLGIPP 303 (397)
Q Consensus 290 ~v~l~~G~iv~~g~ 303 (397)
++|++|++++.|+
T Consensus 210 -~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 210 -LEMKDGKVVGEIT 222 (224)
T ss_dssp -EEEETTEEEEEEE
T ss_pred -EEEECCEEEEEee
Confidence 5799999998875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=369.48 Aligned_cols=204 Identities=14% Similarity=0.168 Sum_probs=168.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++|+++||+++|++ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 5 ~~~l~i~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGE-FKA-----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETT-EEE-----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECC-Eee-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 458999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC-----------------hhhHHHHHHHHHHHCCCc-ccccC
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-----------------SDNINMIKLWIMEGVRHG-ELVIR 199 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-----------------~~~~~~~~~~ll~~vgl~-~~~~~ 199 (397)
+.+|||||++.+++ .+||.||+.++... ..+.++++.++++.+++. ...++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 150 (257)
T 1g6h_A 74 KEPAELYHYGIVRTFQTPQPLK---EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150 (257)
T ss_dssp CCHHHHHHHTEEECCCCCGGGG---GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred CCHHHHHhCCEEEEccCCccCC---CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC
Confidence 35999999998775 68999999886321 123456788999999994 45677
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tvi~vtH 211 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMI--------VMDEPI--AGVAPGLAH--DIFNHVLEL-------KAKGITFLIIEH 211 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECS
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEec
Confidence 8899999999999999999999999 555556 777755443 334444433 135899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCccc
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQ 306 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~e 306 (397)
+ ++..+|||+ ++|++|++++.|++++
T Consensus 212 d~~~~~~~~d~v-~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 212 RLDIVLNYIDHL-YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCSTTGGGCSEE-EEEETTEEEEEEESHH
T ss_pred CHHHHHHhCCEE-EEEECCEEEEEeCHHH
Confidence 5 788999999 5699999999998877
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=366.11 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=171.4
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
.|++|+++||+++|+ +..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 12 ~~~~l~i~~l~~~y~-~~~v-----l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIG-KKEI-----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEEC-CEEE-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 578999999999995 3334 999999999999999999999999999999999999 999999999973
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
+.|||+||++.+++ .+||+||+.++.. ...+.++++.++++.+++.+ ..+++.+|||||||||+|
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYR---NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCT---TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCC---CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence 46999999998876 6899999987532 23334567888999999954 567788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+|||+ +
T Consensus 158 AraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tiiivtHd~~~~~~~~d~v-~ 217 (256)
T 1vpl_A 158 ARALMVNPRLA--------ILDEPT--SGLDVLNAR--EVRKILKQA-------SQEGLTILVSSHNMLEVEFLCDRI-A 217 (256)
T ss_dssp HHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEEECCHHHHTTTCSEE-E
T ss_pred HHHHHcCCCEE--------EEeCCc--cccCHHHHH--HHHHHHHHH-------HhCCCEEEEEcCCHHHHHHHCCEE-E
Confidence 99999999999 555556 777755443 334444433 1358999999995 778899999 5
Q ss_pred EeeCCEEeeeCCcccccC
Q 015952 292 RTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~ 309 (397)
+|++|+++..|++++++.
T Consensus 218 ~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 218 LIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEETTEEEEEEEHHHHHH
T ss_pred EEECCEEEEecCHHHHHH
Confidence 799999999999988864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=376.31 Aligned_cols=233 Identities=13% Similarity=0.125 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCC
Q 015952 41 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (397)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpn 112 (397)
+..++....+.+|+.++++.+++.... ....|+++||+|+|+++..+ |+||||+|++||++||+|||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSS
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCC
Confidence 334444555677888887765543211 13469999999999655545 99999999999999999999
Q ss_pred CCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHH
Q 015952 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM 182 (397)
Q Consensus 113 GsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~ 182 (397)
|||||||+|+|+|+++ |++|+|.++|. ++.||||||++.+|. .||+||+.++..... .+
T Consensus 90 GsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~----~Tv~eNi~~~~~~~~--~~ 158 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN----DTIADNIRYGRVTAG--ND 158 (306)
T ss_dssp CHHHHHHHHHHTTSSC-----CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS----EEHHHHHHTTSTTCC--HH
T ss_pred CchHHHHHHHHHcCCC-----CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc----ccHHHHHHhhcccCC--HH
Confidence 9999999999999999 99999999997 357999999999885 699999999864211 12
Q ss_pred HHHHHHHHCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 183 IKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 183 ~~~~ll~~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
.+.++++.+++. ....++.+|||||||||+|||||+.+|+|| +||||| ++||+....
T Consensus 159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL--------lLDEPt--s~LD~~~~~- 227 (306)
T 3nh6_A 159 EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII--------LLDEAT--SALDTSNER- 227 (306)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE--------EEECCS--SCCCHHHHH-
T ss_pred HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE--------EEECCc--ccCCHHHHH-
Confidence 233444444442 123456789999999999999999999999 555556 777765444
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
...+.+.++ ..++|+|+|||+ .....|||| ++|++|+|++.|++++++..
T Consensus 228 -~i~~~l~~l--------~~~~Tvi~itH~l~~~~~aD~i-~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 228 -AIQASLAKV--------CANRTTIVVAHRLSTVVNADQI-LVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp -HHHHHHHHH--------HTTSEEEEECCSHHHHHTCSEE-EEEETTEEEEEECHHHHHHH
T ss_pred -HHHHHHHHH--------cCCCEEEEEEcChHHHHcCCEE-EEEECCEEEEECCHHHHHhc
Confidence 334444433 357899999996 444559999 57999999999999998754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=359.86 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=170.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++|+ . + |+|+||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~~~~l~~~y~--~-~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 66 (240)
T 2onk_A 1 MFLKVRAEKRLG--N-F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITPLP 66 (240)
T ss_dssp CCEEEEEEEEET--T-E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSC
T ss_pred CEEEEEEEEEeC--C-E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCc
Confidence 589999999994 3 4 9999999999 9999999999999999999999999 999999999962
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.+||+||++.+++ .+||+||+.++... ....++++.++++.+++.+ ..+++.+|||||||||+|||||+.
T Consensus 67 ~~~~~i~~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 67 PERRGIGFVPQDYALFP---HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp TTTSCCBCCCSSCCCCT---TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhCcEEEEcCCCccCC---CCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 46999999998876 68999999987542 1223567889999999944 567788999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++|+
T Consensus 144 ~p~ll--------lLDEPt--s~LD~~~~~--~~~~~l~~l~------~~~g~tvi~vtHd~~~~~~~~d~i-~~l~~G~ 204 (240)
T 2onk_A 144 QPRLL--------LLDEPL--SAVDLKTKG--VLMEELRFVQ------REFDVPILHVTHDLIEAAMLADEV-AVMLNGR 204 (240)
T ss_dssp CCSSB--------EEESTT--SSCCHHHHH--HHHHHHHHHH------HHHTCCEEEEESCHHHHHHHCSEE-EEEETTE
T ss_pred CCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCE
Confidence 99999 555556 777755443 3344444331 1248999999995 788999999 5799999
Q ss_pred EeeeCCcccccCCC
Q 015952 298 LLGIPPAKQIFDIP 311 (397)
Q Consensus 298 iv~~g~~~el~~~~ 311 (397)
+++.|++++++..+
T Consensus 205 i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 205 IVEKGKLKELFSAK 218 (240)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEECCHHHHHhCc
Confidence 99999999988765
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=352.58 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEC-CCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~-~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
-++++||+|+|+ ++..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 7 ~~~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVI-----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSCEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 489999999993 23435 999999999999999999999999999999999999 999999999972
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHH
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLR 207 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGq 207 (397)
+.||||||++.++. .||+||+.++.... ..+.+.++++.+++.+. ..++.+|||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~----~tv~enl~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 77 DPNWLRRQVGVVLQDNVLLN----RSIIDNISLANPGM--SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp CHHHHHHHEEEECSSCCCTT----SBHHHHHTTTCTTC--CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred CHHHHHhcEEEEeCCCcccc----ccHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 46999999998875 59999999874311 12345567777777332 23357899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||+|||+ .....|
T Consensus 151 ~qRv~iAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~~--------~~g~tviivtH~~~~~~~~ 210 (247)
T 2ff7_A 151 RQRIAIARALVNNPKIL--------IFDEAT--SALDYESEH--VIMRNMHKI--------CKGRTVIIIAHRLSTVKNA 210 (247)
T ss_dssp HHHHHHHHHHTTCCSEE--------EECCCC--SCCCHHHHH--HHHHHHHHH--------HTTSEEEEECSSGGGGTTS
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------cCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999 555555 677754443 233444332 358999999996 444569
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
||+ ++|++|++++.|++++++..|
T Consensus 211 d~v-~~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 211 DRI-IVMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp SEE-EEEETTEEEEEECHHHHHTST
T ss_pred CEE-EEEECCEEEEECCHHHHHhCC
Confidence 999 579999999999999998765
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=357.62 Aligned_cols=209 Identities=16% Similarity=0.126 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEC-CC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYT-PG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~-~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
||+++||+++|+ ++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA-----LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERK 71 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEC
T ss_pred EEEEEEEEEEecCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEEC
Confidence 689999999996 22 334 999999999999999999999999999999999999 999999999963
Q ss_pred ------CcEEEEecCC-CCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCc--cc-ccCCCCCChHHHHHHH
Q 015952 146 ------GDGTYFLQEY-TIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHG--EL-VIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 ------~~ig~v~Q~~-~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~--~~-~~~~~~lSGGqkQRva 212 (397)
+.+|||||++ ..+. .+||+||+.++.. ...+.++++.++++.+++. +. .+++.+|||||||||+
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 72 KGYEIRRNIGIAFQYPEDQFF---AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA 148 (266)
T ss_dssp CHHHHGGGEEEECSSGGGGCC---CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHH
T ss_pred chHHhhhhEEEEeccchhhcC---CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHH
Confidence 4699999996 3333 4899999998643 2223356788899999997 64 5668899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ .+..+|||+
T Consensus 149 lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tii~vtHd~~~~~~~~d~v- 208 (266)
T 2yz2_A 149 IASVIVHEPDIL--------ILDEPL--VGLDREGKT--DLLRIVEKW-------KTLGKTVILISHDIETVINHVDRV- 208 (266)
T ss_dssp HHHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCCTTTGGGCSEE-
T ss_pred HHHHHHcCCCEE--------EEcCcc--ccCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEE-
Confidence 999999999999 555556 777754443 334444433 1348999999995 777899999
Q ss_pred EEeeCCEEeeeCCcccccCCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|+++..|++++++..+.
T Consensus 209 ~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 209 VVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp EEEETTEEEEEEEHHHHHHHSC
T ss_pred EEEECCEEEEeCCHHHHhcCcc
Confidence 5799999999999988876543
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=350.48 Aligned_cols=203 Identities=13% Similarity=0.202 Sum_probs=165.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~ 150 (397)
+|+++||+++|+.+..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ ++.+||
T Consensus 4 ~l~i~~l~~~y~~~~~v-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~---~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFL-----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEV---YQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEE-----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEE---CSCEEE
T ss_pred eEEEeeEEEEeCCCCeE-----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE---eccEEE
Confidence 79999999999623435 999999999999999999999999999999999999 99999994 467999
Q ss_pred EecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC
Q 015952 151 FLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEP 221 (397)
Q Consensus 151 v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P 221 (397)
+||++.++. .+||.||+.++.. ......+++.++++.+++.+ ..+++.+|||||||||+|||||+.+|
T Consensus 71 v~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 71 VPQFFSSPF---AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp ECSCCCCSS---CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred EcCCCccCC---CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999998875 6899999998642 12334567889999999954 56678899999999999999999999
Q ss_pred CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe
Q 015952 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 222 ~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv 299 (397)
++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ .+.++|||+ ++|++|+ +
T Consensus 148 ~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l~------~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~-~ 207 (253)
T 2nq2_C 148 KLI--------LLDEPT--SALDLANQD--IVLSLLIDLA------QSQNMTVVFTTHQPNQVVAIANKT-LLLNKQN-F 207 (253)
T ss_dssp SEE--------EESSSS--TTSCHHHHH--HHHHHHHHHH------HTSCCEEEEEESCHHHHHHHCSEE-EEEETTE-E
T ss_pred CEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHHhCCEE-EEEeCCe-E
Confidence 999 555555 677754443 3344444331 1238999999995 777899999 5799999 9
Q ss_pred eeCCcccccC
Q 015952 300 GIPPAKQIFD 309 (397)
Q Consensus 300 ~~g~~~el~~ 309 (397)
+.|++++++.
T Consensus 208 ~~g~~~~~~~ 217 (253)
T 2nq2_C 208 KFGETRNILT 217 (253)
T ss_dssp EEEEHHHHCC
T ss_pred ecCCHHHHhC
Confidence 9999888753
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=354.86 Aligned_cols=209 Identities=12% Similarity=0.169 Sum_probs=164.3
Q ss_pred CCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
..+|+++||+++|+++ ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i 83 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV-----LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPL 83 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred CceEEEEEEEEEeCCCCCcee-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEc
Confidence 3579999999999641 334 999999999999999999999999999999999999 999999999972
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--h-hhHH-----HHHHHHHHHC--CCc-ccccCCCCCCh
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--S-DNIN-----MIKLWIMEGV--RHG-ELVIRRSDSSS 205 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~-~~~~-----~~~~~ll~~v--gl~-~~~~~~~~lSG 205 (397)
+.||||||++.++. .||.||+.++... . .... ..+.++++.+ ++. ...+++.+|||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 159 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG----RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG 159 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS----SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred ccCCHHHHhccEEEEecCCcccc----ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence 46999999998875 5999999987541 1 1111 2235667777 563 34567889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ ..+.|+|||+|||+ ....
T Consensus 160 Gq~QRv~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~~------~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLL--------ILDNAT--SALDAGNQL--RVQRLLYES------PEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHC------TTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH------HhhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999 555556 777754433 334444332 12358999999996 4445
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
.|||| ++|++|++++.|++++++..
T Consensus 222 ~~d~v-~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 222 RAHHI-LFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TCSEE-EEEETTEEEEEECHHHHHHH
T ss_pred hCCEE-EEEECCEEEEECCHHHHHhC
Confidence 69999 57999999999999888654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=359.07 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=168.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.++|+++||+++|++ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 19 ~~~l~~~~l~~~y~~-~~v-----L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG-KTI-----LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGK 87 (279)
T ss_dssp CEEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC-
T ss_pred CceEEEEeEEEEECC-EEE-----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 457999999999953 334 999999999999999999999999999999999999 99999999995
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLR 207 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGq 207 (397)
++.|||+||++.++. ...+||+||+.++.. ...+..+++.++++.+++.+ ..+++.+|||||
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 88 VGYSAETVRQHIGFVSHSLLEKF-QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp --CCHHHHHTTEEEECHHHHTTS-CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred ccCCHHHHcCcEEEEEcCccccc-CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 246999999975422 014699999988642 12334567889999999944 567788999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE--EEEech--hHH
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV--VVVTHG--DLL 283 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV--IivTH~--~~~ 283 (397)
||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|| |+|||+ ++.
T Consensus 167 kqRv~lAraL~~~p~lL--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tv~~iivtHd~~~~~ 227 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVL--------ILDEPA--AGLDFIARE--SLLSILDSL-------SDSYPTLAMIYVTHFIEEIT 227 (279)
T ss_dssp HHHHHHHHHHHTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHHCTTCEEEEEESCGGGCC
T ss_pred HHHHHHHHHHhCCCCEE--------EEeCCc--cccCHHHHH--HHHHHHHHH-------HHCCCEEEEEEEecCHHHHH
Confidence 99999999999999999 555556 777755443 334444433 1248999 999995 777
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
++|||| ++|++|++++.|++++++.
T Consensus 228 ~~~d~v-~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 228 ANFSKI-LLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp TTCCEE-EEEETTEEEEEEEHHHHCS
T ss_pred HhCCEE-EEEECCEEEEECCHHHHhc
Confidence 899999 5799999999999888763
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=350.25 Aligned_cols=203 Identities=16% Similarity=0.090 Sum_probs=159.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~- 145 (397)
|+|++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|..
T Consensus 1 M~~l~~~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 1 MSQLEIRDLWASIDG-ETI-----LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENI 69 (250)
T ss_dssp -CEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEC
T ss_pred CceEEEEeEEEEECC-EEE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEEC
Confidence 347999999999953 334 9999999999999999999999999999999999 78 999999999972
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCC-cc-cccCCCC-CCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRH-GE-LVIRRSD-SSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl-~~-~~~~~~~-lSG 205 (397)
..++|+||++.+++ .+|+.||+.++.. ...+..+++.++++.+++ .+ ..+++.+ |||
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 146 (250)
T 2d2e_A 70 LELSPDERARKGLFLAFQYPVEVP---GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSG 146 (250)
T ss_dssp TTSCHHHHHHTTBCCCCCCCC-CC---SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC---
T ss_pred CCCCHHHHHhCcEEEeccCCcccc---CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 24899999998876 6899999987531 112335677889999999 44 4566788 999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ .+.
T Consensus 147 GqkQrv~iAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 147 GEKKRNEILQLLVLEPTYA--------VLDETD--SGLDIDALK--VVARGVNAM-------RGPNFGALVITHYQRILN 207 (250)
T ss_dssp -HHHHHHHHHHHHHCCSEE--------EEECGG--GTTCHHHHH--HHHHHHHHH-------CSTTCEEEEECSSSGGGG
T ss_pred HHHHHHHHHHHHHcCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEecCHHHHH
Confidence 9999999999999999999 556666 777755443 344444443 2368999999995 666
Q ss_pred cc-ccEEEEEeeCCEEeeeCCcc
Q 015952 284 SL-TDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 284 ~~-aDrI~v~l~~G~iv~~g~~~ 305 (397)
.+ |||+ ++|++|++++.|+++
T Consensus 208 ~~~~d~v-~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 208 YIQPDKV-HVMMDGRVVATGGPE 229 (250)
T ss_dssp TSCCSEE-EEEETTEEEEEESHH
T ss_pred HhcCCEE-EEEECCEEEEEeCHH
Confidence 77 5999 579999999988875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=349.40 Aligned_cols=203 Identities=12% Similarity=0.207 Sum_probs=162.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
|++++||+++|+++..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 1 ml~~~~l~~~y~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS 70 (243)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEEeCCCCce-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCC
Confidence 58999999999423334 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc-c-----------cCCCCCChHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-V-----------IRRSDSSSLRN 208 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~-----------~~~~~lSGGqk 208 (397)
++.+||+||++.++. .||.||+.++..... ..+.+.++++.+++.+. . .++.+||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 71 LENWRSQIGFVSQDSAIMA----GTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CSCCTTTCCEECCSSCCCC----EEHHHHTTSCTTSCS-CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHHHHhhEEEEcCCCcccc----ccHHHHHhhhccCCC-CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 246999999998875 599999998732111 12346678888887432 2 23568999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||++||+ .....||
T Consensus 146 qrv~lAral~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~~--------~~~~tvi~vtH~~~~~~~~d 205 (243)
T 1mv5_A 146 QRLAIARAFLRNPKIL--------MLDEAT--ASLDSESES--MVQKALDSL--------MKGRTTLVIAHRLSTIVDAD 205 (243)
T ss_dssp HHHHHHHHHHHCCSEE--------EEECCS--CSSCSSSCC--HHHHHHHHH--------HTTSEEEEECCSHHHHHHCS
T ss_pred HHHHHHHHHhcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCChHHHHhCC
Confidence 9999999999999999 555556 788876665 344555443 258999999996 4445699
Q ss_pred EEEEEeeCCEEeeeCCcccccC
Q 015952 288 RARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~ 309 (397)
|+ ++|++|++++.|++++++.
T Consensus 206 ~v-~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 206 KI-YFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EE-EEEETTEECCCSCHHHHHH
T ss_pred EE-EEEECCEEEEeCCHHHHHh
Confidence 99 5799999999999887764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=369.00 Aligned_cols=206 Identities=12% Similarity=0.140 Sum_probs=169.2
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
...|+++||+|+|+.+ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAI-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWD 85 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTT
T ss_pred CCeEEEEEEEEEecCCCeEE-----eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECC
Confidence 4579999999999533 323 999999999999999999999999999999999975 6899999997
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCC-----------CCh
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSD-----------SSS 205 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~-----------lSG 205 (397)
++.||||||++.+|+ +||+||+.+.... .++++.++++.+++. ...++|.+ |||
T Consensus 86 ~~~~~~~rr~ig~v~Q~~~lf~----~tv~enl~~~~~~---~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 86 SITLEQWRKAFGVIPQKVFIFS----GTFRKNLDPNAAH---SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSH 158 (390)
T ss_dssp SSCHHHHHHTEEEESCCCCCCS----EEHHHHHCTTCCS---CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCH
T ss_pred cCChHHHhCCEEEEcCCcccCc----cCHHHHhhhcccc---CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCH
Confidence 267999999999885 7999999854321 234577899999994 45666777 999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||||+|||||+.+|++| +||||| ++||+.+.. ...+.+.+ ...++|+|+|||+ ++..
T Consensus 159 GqrQRvalARAL~~~P~lL--------LLDEPt--s~LD~~~~~--~l~~~l~~--------~~~~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 159 GHKQLMCLARSVLSKAKIL--------LLDEPS--AHLDPVTYQ--IIRRTLKQ--------AFADCTVILCEARIEAML 218 (390)
T ss_dssp HHHHHHHHHHHHHTTCCEE--------EEESHH--HHSCHHHHH--HHHHHHHT--------TTTTSCEEEECSSSGGGT
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHH--------HhCCCEEEEEEcCHHHHH
Confidence 9999999999999999999 666666 888865443 23333322 2358999999996 7777
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.|||| ++|++|+|++.|++++++..|.+
T Consensus 219 ~aDri-~vl~~G~i~~~g~~~el~~~p~~ 246 (390)
T 3gd7_A 219 ECDQF-LVIEENKVRQYDSILELYHYPAD 246 (390)
T ss_dssp TCSEE-EEEETTEEEEESSHHHHHHCCSB
T ss_pred hCCEE-EEEECCEEEEECCHHHHHhCCCc
Confidence 89999 56999999999999999988763
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=348.71 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=162.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~- 145 (397)
+++|+++||+++|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|..
T Consensus 18 ~~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~i 86 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAI-----LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDL 86 (267)
T ss_dssp --CEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEG
T ss_pred CceEEEEeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEEC
Confidence 46899999999995 3334 9999999999999999999999999999999999 57 899999999972
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----------ChhhHHHHHHHHHHHCCCc-cc-ccCCC-
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----------ASDNINMIKLWIMEGVRHG-EL-VIRRS- 201 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----------~~~~~~~~~~~ll~~vgl~-~~-~~~~~- 201 (397)
..+||+||++.+++ .+|+.+|+.+... ...+..+++.++++.+++. .. .+++.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 163 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIP---GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 163 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCT---TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred CcCCHHHHhhCCEEEEccCccccc---cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 24999999998876 6899999875321 1223356788999999994 43 45565
Q ss_pred CCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-
Q 015952 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG- 280 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~- 280 (397)
+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lL--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tviivtHd~ 224 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELC--------ILDESD--SGLDIDALK--VVADGVNSL-------RDGKRSFIIVTHYQ 224 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHTT-------CCSSCEEEEECSSG
T ss_pred CCCHHHHHHHHHHHHHHhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeeCH
Confidence 59999999999999999999999 555556 777754433 233333322 2358999999995
Q ss_pred -hHHcc-ccEEEEEeeCCEEeeeCCccccc
Q 015952 281 -DLLSL-TDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 281 -~~~~~-aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
.+..+ |||+ ++|++|++++.|+++++.
T Consensus 225 ~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 225 RILDYIKPDYV-HVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp GGGGTSCCSEE-EEEETTEEEEEECTTHHH
T ss_pred HHHHhhcCCEE-EEEECCEEEEEcCHHHHh
Confidence 56665 9999 579999999999887653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=378.93 Aligned_cols=240 Identities=11% Similarity=0.159 Sum_probs=188.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....+..++....+.+|+.++++.+++.+.. ...+++++||+|+|+++ .++ |+|+||+|++||+++|
T Consensus 300 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~i~l~i~~G~~~~i 374 (582)
T 3b5x_A 300 ALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA-----LSHVSFSIPQGKTVAL 374 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEECCCCEEEE
Confidence 34456667777888899999999876543211 13479999999999643 334 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++....
T Consensus 375 vG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~tv~eni~~~~~~~- 444 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN----DTIANNIAYAAEGE- 444 (582)
T ss_pred ECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc----ccHHHHHhccCCCC-
Confidence 99999999999999999999 99999999996 357999999999886 59999999975211
Q ss_pred hHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
..++.+.++++.+++.+. ..++.+||||||||++|||||+++|++| +||||| ++||+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~il--------llDEpt--s~LD~~ 514 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL--------ILDEAT--SALDTE 514 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEE--------EEECcc--ccCCHH
Confidence 123456677777777322 2235789999999999999999999999 666666 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
... ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..+
T Consensus 515 ~~~--~i~~~l~~~--------~~~~tvi~itH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 515 SER--AIQAALDEL--------QKNKTVLVIAHRLSTIEQADEI-LVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHhCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 544 233444332 348999999996 555689999 579999999999999987653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=339.48 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=156.0
Q ss_pred CCeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCc
Q 015952 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ 147 (397)
|.+++++||+++|+. +..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .
T Consensus 1 M~~l~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g---~ 67 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPPT-----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKG---S 67 (237)
T ss_dssp -CCEEEEEEEEESCTTSCCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECS---C
T ss_pred CCeEEEEEEEEEeCCCCCce-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECC---E
Confidence 347999999999963 2334 999999999999999999999999999999999999 9999999999 5
Q ss_pred EEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHH---HHHHCCC-c-----ccccCCCCCChHHHHHHHHHHHHc
Q 015952 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLW---IMEGVRH-G-----ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 148 ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~---ll~~vgl-~-----~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+||+||++.++ .+||.||+.++.....+..+.+.+ +++.+++ . ...+++.+|||||||||+|||||+
T Consensus 68 i~~v~Q~~~~~----~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 68 VAYVPQQAWIQ----NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp EEEECSSCCCC----SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCC----CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999998765 489999999875422221112211 2223332 1 134568899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCE
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~ 297 (397)
.+|++| +||||| ++||+... +.+.+.+... ....+|+|||+|||+ .....|||+ ++|++|+
T Consensus 144 ~~p~ll--------lLDEPt--s~LD~~~~------~~i~~~l~~~-~~~~~~~tviivtH~~~~~~~~d~v-~~l~~G~ 205 (237)
T 2cbz_A 144 SNADIY--------LFDDPL--SAVDAHVG------KHIFENVIGP-KGMLKNKTRILVTHSMSYLPQVDVI-IVMSGGK 205 (237)
T ss_dssp HCCSEE--------EEESTT--TTSCHHHH------HHHHHHTTST-TSTTTTSEEEEECSCSTTGGGSSEE-EEEETTE
T ss_pred cCCCEE--------EEeCcc--cccCHHHH------HHHHHHHHHH-HhhcCCCEEEEEecChHHHHhCCEE-EEEeCCE
Confidence 999999 555556 77775433 3333333100 011358999999996 444679999 5799999
Q ss_pred EeeeCCcccccCC
Q 015952 298 LLGIPPAKQIFDI 310 (397)
Q Consensus 298 iv~~g~~~el~~~ 310 (397)
+++.|++++++..
T Consensus 206 i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 206 ISEMGSYQELLAR 218 (237)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEeCCHHHHhhc
Confidence 9999999887643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=345.85 Aligned_cols=199 Identities=15% Similarity=0.176 Sum_probs=164.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++ .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|..
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~~ 67 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAWS 67 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGSC
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcCC
Confidence 7999999976 24 999999999999999999999999999999999999 99 999999972
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.+||+||++.++. .+||+||+.++...... ++++.++++.+++.+ ..+++.+|||||||||+|||||+.
T Consensus 68 ~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 68 ATKLALHRAYLSQQQTPPF---ATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp HHHHHHHEEEECSCCCCCT---TCBHHHHHHTTCSSTTC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhceEEEECCCCccCC---CCcHHHHHHHhhccCCc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 46999999998776 68999999987432112 567888999999954 567788999999999999999999
Q ss_pred CCC-------eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 220 EPS-------VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 220 ~P~-------iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
+|+ +| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+|||+
T Consensus 144 ~p~~~~~~~~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tviivtHd~~~~~~~~d~v- 203 (249)
T 2qi9_C 144 ITPQANPAGQLL--------LLDEPM--NSLDVAQQS--ALDKILSAL-------SQQGLAIVMSSHDLNHTLRHAHRA- 203 (249)
T ss_dssp HCTTTCTTCCEE--------EESSTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCHHHHHHHCSEE-
T ss_pred CCCcCCCCCeEE--------EEECCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-
Confidence 999 99 555556 777755443 334444333 1358999999995 677999999
Q ss_pred EEeeCCEEeeeCCcccccC
Q 015952 291 IRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|++++.|++++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp EEEETTEEEEEEEHHHHSC
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 5799999999999888763
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=344.76 Aligned_cols=202 Identities=12% Similarity=0.186 Sum_probs=160.1
Q ss_pred CeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 70 SLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.+|+++||+++|++. ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT-----LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVN 84 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGG
T ss_pred CeEEEEEEEEEeCCCCcCce-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhh
Confidence 579999999999643 224 999999999999999999999999999999999998 8 899999996
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCCh
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSS 205 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSG 205 (397)
++.|||+||++.++. .||+||+.++..... .+.+.++++.+++.+. ..++.+|||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~----~tv~enl~~~~~~~~--~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSg 158 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN----ETIKYNILYGKLDAT--DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS----EEHHHHHHTTCTTCC--HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCH
T ss_pred hcCHHHHhccEEEEcCCCcccc----cCHHHHHhccCCCCC--HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCH
Confidence 256999999998875 699999998643211 2345567777776221 245678999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||+|||+ ....
T Consensus 159 GqkqRv~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~l--------~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIV--------IFDEAT--SSLDSKTEY--LFQKAVEDL--------RKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEE--------EEECCC--CTTCHHHHH--HHHHHHHHH--------TTTSEEEEECSSGGGST
T ss_pred HHHHHHHHHHHHHcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEcCCHHHHH
Confidence 9999999999999999999 555555 777754433 334444333 347999999996 4445
Q ss_pred cccEEEEEeeCCEEeeeCCcccccC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.|||+ ++|++|++++.|++++++.
T Consensus 219 ~~d~i-~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 219 SAESI-ILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp TCSEE-EEEETTEEEEEECHHHHHH
T ss_pred hCCEE-EEEECCEEEEECCHHHHHh
Confidence 69999 5799999999999988864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=335.62 Aligned_cols=201 Identities=12% Similarity=0.088 Sum_probs=155.2
Q ss_pred CeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 70 ~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.+|+++||+++|+. +..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g---~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG---RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCS-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECS---CE
T ss_pred ceEEEEEEEEEeCCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECC---EE
Confidence 47999999999963 2334 999999999999999999999999999999999999 9999999998 59
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArA 216 (397)
||+||++.+++ .||+||+.++..... ....++++.+++.+ ...++.+|||||||||+||||
T Consensus 72 ~~v~q~~~~~~----~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAra 144 (229)
T 2pze_A 72 SFCSQFSWIMP----GTIKENIIFGVSYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 144 (229)
T ss_dssp EEECSSCCCCS----BCHHHHHHTTSCCCH---HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHH
T ss_pred EEEecCCcccC----CCHHHHhhccCCcCh---HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 99999998875 499999998753211 11223444444421 122357899999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeC
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYL 295 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~ 295 (397)
|+.+|++| +||||| ++||+... +.+.+.+. ....+|+|||++||+ .....|||+ ++|++
T Consensus 145 l~~~p~ll--------lLDEPt--s~LD~~~~------~~i~~~l~---~~~~~~~tvi~vtH~~~~~~~~d~v-~~l~~ 204 (229)
T 2pze_A 145 VYKDADLY--------LLDSPF--GYLDVLTE------KEIFESCV---CKLMANKTRILVTSKMEHLKKADKI-LILHE 204 (229)
T ss_dssp HHSCCSEE--------EEESTT--TTSCHHHH------HHHHHHCC---CCCTTTSEEEEECCCHHHHHHCSEE-EEEET
T ss_pred HhcCCCEE--------EEECcc--cCCCHHHH------HHHHHHHH---HHhhCCCEEEEEcCChHHHHhCCEE-EEEEC
Confidence 99999999 555555 67774433 34444321 112358999999996 334569999 57999
Q ss_pred CEEeeeCCcccccCC
Q 015952 296 GELLGIPPAKQIFDI 310 (397)
Q Consensus 296 G~iv~~g~~~el~~~ 310 (397)
|++++.|++++++..
T Consensus 205 G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 205 GSSYFYGTFSELQNL 219 (229)
T ss_dssp TEEEEEECHHHHHTC
T ss_pred CEEEEECCHHHHHhc
Confidence 999999999888754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=377.61 Aligned_cols=240 Identities=12% Similarity=0.166 Sum_probs=187.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~ 105 (397)
......+..+++...+.+|+.++++.+++.... ....++++||+|+|+++. ++ |+|+||+|++||+
T Consensus 295 ~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~i~~G~~ 369 (578)
T 4a82_A 295 RRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI-----LKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCS-----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcc-----eeeeEEEECCCCE
Confidence 344556777788888999999999876653321 123599999999996432 34 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
++|+||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++..
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~----~tv~eni~~~~~ 440 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS----DTVKENILLGRP 440 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS----SBHHHHHGGGCS
T ss_pred EEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc----ccHHHHHhcCCC
Confidence 99999999999999999999999 99999999997 347999999999886 599999999764
Q ss_pred ChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 176 ASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
... .+.+.++++.+++.+ ...++.+||||||||++|||||+++|++| +||||| ++|
T Consensus 441 ~~~--~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~il--------llDEpt--s~L 508 (578)
T 4a82_A 441 TAT--DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL--------ILDEAT--SAL 508 (578)
T ss_dssp SCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE--------EEESTT--TTC
T ss_pred CCC--HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEE--------EEECcc--ccC
Confidence 221 123445555555521 12345689999999999999999999999 666666 788
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+.++. ...+.+.++ .+++|+|+|||+ ...+.|||| ++|++|++++.|++++++..+
T Consensus 509 D~~~~~--~i~~~l~~~--------~~~~t~i~itH~l~~~~~~d~i-~~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 509 DLESES--IIQEALDVL--------SKDRTTLIVAHRLSTITHADKI-VVIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp CHHHHH--HHHHHHHHH--------TTTSEEEEECSSGGGTTTCSEE-EEEETTEEEEEECHHHHHHTT
T ss_pred CHHHHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 865443 233333332 457899999996 555679999 579999999999999988653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=377.76 Aligned_cols=238 Identities=9% Similarity=0.107 Sum_probs=186.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
....+..++....+.+|+.++++.+++.+.. ...+++++||+|+|+++ .++ |+|+||+|++||+++|+
T Consensus 301 l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~~G~~~~iv 375 (582)
T 3b60_A 301 LTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIPAGKTVALV 375 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEcCCCEEEEE
Confidence 3445666777778899999999876543211 13479999999999643 334 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhh
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN 179 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~ 179 (397)
||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++.... .
T Consensus 376 G~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~tv~eni~~~~~~~-~ 445 (582)
T 3b60_A 376 GRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN----DTVANNIAYARTEE-Y 445 (582)
T ss_dssp ECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS----SBHHHHHHTTTTSC-C
T ss_pred CCCCCCHHHHHHHHhhccC-----CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC----CCHHHHHhccCCCC-C
Confidence 9999999999999999999 99999999997 247999999999886 59999999975211 1
Q ss_pred HHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccc
Q 015952 180 INMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~ 247 (397)
.++.+.++++.+++.+. ..++.+||||||||++|||||+++|++| +||||| ++||+..
T Consensus 446 ~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~il--------llDEpt--s~LD~~~ 515 (582)
T 3b60_A 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPIL--------ILDEAT--SALDTES 515 (582)
T ss_dssp CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEE--------EEETTT--SSCCHHH
T ss_pred CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE--------EEECcc--ccCCHHH
Confidence 13446667777777321 2345789999999999999999999999 666666 7777655
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+. ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 516 ~~--~i~~~l~~~--------~~~~tvi~itH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 516 ER--AIQAALDEL--------QKNRTSLVIAHRLSTIEQADEI-VVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HH--HHHHHHHHH--------HTTSEEEEECSCGGGTTTCSEE-EEEETTEEEEEECHHHHHHH
T ss_pred HH--HHHHHHHHH--------hCCCEEEEEeccHHHHHhCCEE-EEEECCEEEEecCHHHHHHc
Confidence 44 234444333 348999999996 555689999 57999999999999998754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=375.96 Aligned_cols=236 Identities=14% Similarity=0.170 Sum_probs=183.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
...+..+++.+.+.+|+.++++.+++.... ....++++||+|+|+++ .++ |+|+||+|++||+++|
T Consensus 300 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~i~~Ge~~~i 374 (587)
T 3qf4_A 300 GNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-----LSGVNFSVKPGSLVAV 374 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcc-----eeceEEEEcCCCEEEE
Confidence 345566777888899999999876543221 12369999999999643 334 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. +++||||||++.+++ .|++||+.++.....
T Consensus 375 vG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~----~tv~eni~~~~~~~~ 445 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLID-----PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS----GTIKENLKWGREDAT 445 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS----EEHHHHHTTTCSSCC
T ss_pred ECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcC----ccHHHHHhccCCCCC
Confidence 99999999999999999999 99999999997 357999999999886 599999998764211
Q ss_pred hHHHHHHHHHHHCC-----------Cc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVR-----------HG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vg-----------l~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
. +.+.++++..+ ++ ....++.+||||||||++|||||+++|++| +||||| ++||+.
T Consensus 446 ~--~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il--------llDEpt--s~LD~~ 513 (587)
T 3qf4_A 446 D--DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL--------ILDDCT--SSVDPI 513 (587)
T ss_dssp H--HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE--------EEESCC--TTSCHH
T ss_pred H--HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE--------EEECCc--ccCCHH
Confidence 1 12222333333 31 234567899999999999999999999999 555556 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++. ...+.+.++ .+|+|+|+|||+ .....|||| ++|++|++++.|++++++..
T Consensus 514 ~~~--~i~~~l~~~--------~~~~tvi~itH~l~~~~~~d~i-~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 514 TEK--RILDGLKRY--------TKGCTTFIITQKIPTALLADKI-LVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHH--HHHHHHHHH--------STTCEEEEEESCHHHHTTSSEE-EEEETTEEEEEECHHHHHHH
T ss_pred HHH--HHHHHHHHh--------CCCCEEEEEecChHHHHhCCEE-EEEECCEEEEECCHHHHHhC
Confidence 544 333444332 468999999996 556789999 57999999999999998754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=379.50 Aligned_cols=238 Identities=12% Similarity=0.192 Sum_probs=185.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....+..++....+.+|+.++++.+++.... ....++++||+|+|+++.++ |+|+||+|++||+++|
T Consensus 312 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~isl~i~~G~~~~i 386 (598)
T 3qf4_B 312 ELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPV-----LKDITFHIKPGQKVAL 386 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSCS-----CCSEEEECCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceEEEEcCCCEEEE
Confidence 34456667777888999999999876654321 12359999999999654434 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++.....
T Consensus 387 vG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~----~tv~eni~~~~~~~~ 457 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS----TTVKENLKYGNPGAT 457 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS----SBHHHHHHSSSTTCC
T ss_pred ECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc----ccHHHHHhcCCCCCC
Confidence 99999999999999999999 99999999997 357999999999886 599999999754111
Q ss_pred hHHHHHHHHHHHCCCccc-c-----------cCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHGEL-V-----------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~~-~-----------~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
++.+.++++.+++.+. . .++.+||||||||++|||||+++|++| +||||| ++||+.
T Consensus 458 --~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il--------llDEpt--s~LD~~ 525 (598)
T 3qf4_B 458 --DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL--------ILDEAT--SNVDTK 525 (598)
T ss_dssp --TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE--------EECCCC--TTCCHH
T ss_pred --HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEECCc--cCCCHH
Confidence 1223445555555221 2 223689999999999999999999999 555556 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++. ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 526 ~~~--~i~~~l~~~--------~~~~t~i~itH~l~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 526 TEK--SIQAAMWKL--------MEGKTSIIIAHRLNTIKNADLI-IVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHH--HHHHHHHHH--------HTTSEEEEESCCTTHHHHCSEE-EEECSSSEEECSCHHHHHHT
T ss_pred HHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhC
Confidence 544 233444332 358999999996 445669999 57999999999999999865
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=335.91 Aligned_cols=193 Identities=17% Similarity=0.245 Sum_probs=157.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+|+++||+++|++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 75 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK 75 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhhh
Confidence 468999999999964 46 999999999999999999999999999999999999 999999999974
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC--C-hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--A-SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~-~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
+.+||+||++.++. .+||+||+.++.. . ..+ ++++.++++.+++....+++.+||||||||++|||||+.+
T Consensus 76 ~~~~i~~v~q~~~~~~---~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPR---KISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGGEEEECSSCCCCT---TSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred hcCcEEEEeCCCcCCC---CCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC
Confidence 57999999998876 6899999987532 1 122 5678889999999433666889999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~i 298 (397)
|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+|||+ + +..|+|
T Consensus 152 p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~~-------~~~g~tiiivtHd~~~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 152 AEIY--------VLDDPV--VAIDEDSKH--KVLKSILEI-------LKEKGIVIISSREELSYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp CSEE--------EEESTT--TTSCTTTHH--HHHHHHHHH-------HHHHSEEEEEESSCCTTSSEEEEG-G-GGBC--
T ss_pred CCEE--------EEECCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-E-EeCCcc
Confidence 9999 555556 788866554 344444443 1348899999995 888999999 5 777766
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=401.38 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=196.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcE
Q 015952 34 DEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~ 105 (397)
......++..++....+.+|+.++++.+++.+.. ...-|+++||+|+|+.+....+ |+|+||+|++||.
T Consensus 1031 l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~ 1107 (1321)
T 4f4c_A 1031 LGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQT 1107 (1321)
T ss_dssp TTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCE
Confidence 3445566777888888999999999887664331 1236999999999964321122 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
+|||||||||||||+++|.|+++ |++|+|.+||. |++|+||||+|.+|. -|++||+.++..
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~----gTIreNI~~gld 1178 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD----CSIAENIIYGLD 1178 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS----EEHHHHHSSSSC
T ss_pred EEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC----ccHHHHHhccCC
Confidence 99999999999999999999999 99999999998 578999999999997 699999999865
Q ss_pred ChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 176 ASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
+.+...+.+.++++..++.+. ..+...||||||||+||||||+++|+|| +||||| |+|
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~IL--------iLDEaT--SaL 1248 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SAL 1248 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE--------EEESCC--CST
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE--------EEeCcc--ccC
Confidence 333334456667777766321 2345678999999999999999999999 777777 888
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|..++. .+.+.+ ....+|+|+|+|||+ .....|||| ++|++|+|++.|+|++++..+
T Consensus 1249 D~~tE~------~Iq~~l----~~~~~~~TvI~IAHRLsTi~~aD~I-~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1249 DTESEK------VVQEAL----DRAREGRTCIVIAHRLNTVMNADCI-AVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp TSHHHH------HHHHHH----TTTSSSSEEEEECSSSSTTTTCSEE-EEESSSSEEEEECHHHHHHCC
T ss_pred CHHHHH------HHHHHH----HHHcCCCEEEEeccCHHHHHhCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 877665 222222 222479999999997 778889999 579999999999999999764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=335.20 Aligned_cols=199 Identities=15% Similarity=0.214 Sum_probs=160.3
Q ss_pred eEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
|++++|++++|+++ ..+ |+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|..
T Consensus 1 ml~~~~l~~~y~~~~~~~~i-----l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS-----LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVR 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE-----EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGG
T ss_pred CEEEEEEEEEeCCCCcccee-----EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECc
Confidence 58999999999531 334 999999999 9999999999999999999999987 478999999963
Q ss_pred -----CcEE-EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-cc-ccCCCCCChHHHHHHHHHHHH
Q 015952 146 -----GDGT-YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-EL-VIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 146 -----~~ig-~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~-~~~~~~lSGGqkQRvaIArAL 217 (397)
+++| |+||++.+ . +|+.||+.++........+++.++++.+++. +. .+++.+|||||||||+|||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l-~----~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI-G----VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp GCSCCTTEEECCGGGSCT-T----SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred chHHhhheEEEeCCCCcc-C----CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 4799 99999877 4 7999999875321122245678899999996 54 567889999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc-EEEEEee
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD-RARIRTY 294 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD-rI~v~l~ 294 (397)
+.+|++| +||||| ++||+.... ...+.+.++ .+ |||++||+ .+.++|| |+ ++|+
T Consensus 144 ~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~L~~~--------~~--tviivtHd~~~~~~~~d~~i-~~l~ 200 (263)
T 2pjz_A 144 ASQPEIV--------GLDEPF--ENVDAARRH--VISRYIKEY--------GK--EGILVTHELDMLNLYKEYKA-YFLV 200 (263)
T ss_dssp HTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHS--------CS--EEEEEESCGGGGGGCTTSEE-EEEE
T ss_pred HhCCCEE--------EEECCc--cccCHHHHH--HHHHHHHHh--------cC--cEEEEEcCHHHHHHhcCceE-EEEE
Confidence 9999999 555556 777754433 233333322 22 99999995 6788999 99 5799
Q ss_pred CCEEeeeCCcccccC
Q 015952 295 LGELLGIPPAKQIFD 309 (397)
Q Consensus 295 ~G~iv~~g~~~el~~ 309 (397)
+|++++.|++++++.
T Consensus 201 ~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 201 GNRLQGPISVSELLE 215 (263)
T ss_dssp TTEEEEEEEHHHHHT
T ss_pred CCEEEEecCHHHHHh
Confidence 999999999988874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=386.93 Aligned_cols=238 Identities=13% Similarity=0.180 Sum_probs=190.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~ 105 (397)
....+..++.++.+.+|+.++++.+++.+.. ...-|+++||+|+|++. .++ |+|+||+|++|++
T Consensus 372 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v-----L~~isl~i~~G~~ 446 (1321)
T 4f4c_A 372 AGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI-----LRGMNLRVNAGQT 446 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS-----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce-----eeceEEeecCCcE
Confidence 3445667778888999999999987654331 12359999999999643 234 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
+|||||||||||||+++|.|+++ |++|+|.+||. +++||||+|+|.+|+ -|++||+.++..
T Consensus 447 vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~----~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN----CTIEENISLGKE 517 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS----EEHHHHHHTTCT
T ss_pred EEEEecCCCcHHHHHHHhccccc-----cccCcccCCCccchhccHHHHhhcccccCCcceeeC----CchhHHHhhhcc
Confidence 99999999999999999999999 99999999997 457999999999996 699999999865
Q ss_pred ChhhHHHHHHHHHHHCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 176 ASDNINMIKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
... ++.+.++++..+++ ....+...||||||||+|||||++++|+|| +||||| |+|
T Consensus 518 ~~~--~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Il--------iLDE~t--SaL 585 (1321)
T 4f4c_A 518 GIT--REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SAL 585 (1321)
T ss_dssp TCC--HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEE--------EEESTT--TTS
T ss_pred cch--HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEE--------EEeccc--ccC
Confidence 211 22344444444431 123457789999999999999999999999 667777 899
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+.++. ...+.+.++ .+|+|+|+|||+ ...+.||+| ++|++|+|++.|+++|++...
T Consensus 586 D~~te~--~i~~~l~~~--------~~~~T~iiiaHrls~i~~aD~I-ivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 586 DAESEG--IVQQALDKA--------AKGRTTIIIAHRLSTIRNADLI-ISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp CTTTHH--HHHHHHHHH--------HTTSEEEEECSCTTTTTTCSEE-EEEETTEEEEEECHHHHHTTT
T ss_pred CHHHHH--HHHHHHHHH--------hCCCEEEEEcccHHHHHhCCEE-EEeeCCeeeccCCHHHHHHhh
Confidence 987644 233444333 368999999997 788999999 579999999999999998653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=328.55 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=140.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++||++.| ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| ++
T Consensus 38 ~~~l~~~~l~~~~---~~v-----l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g---~i 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG---RI 101 (290)
T ss_dssp ------------C---CCS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCS---CE
T ss_pred CceEEEEEEEEcC---ceE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC---EE
Confidence 3579999999864 224 999999999999999999999999999999999999 9999999998 59
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-c-----------ccCCCCCChHHHHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-L-----------VIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~-----------~~~~~~lSGGqkQRvaIArA 216 (397)
||+||++.+++ .||+||+. +..... ....++++.+++.+ . ..++.+|||||||||+||||
T Consensus 102 ~~v~Q~~~l~~----~tv~enl~-~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAra 173 (290)
T 2bbs_A 102 SFCSQNSWIMP----GTIKENII-GVSYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp EEECSSCCCCS----SBHHHHHH-TTCCCH---HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred EEEeCCCccCc----ccHHHHhh-Ccccch---HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHH
Confidence 99999998875 49999998 532111 12233445555521 1 12347899999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeC
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYL 295 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~ 295 (397)
|+.+|++| +||||| ++||+... +.+.+.+. ....+|+|||++||+ .....|||+ ++|++
T Consensus 174 L~~~p~ll--------lLDEPt--s~LD~~~~------~~i~~~ll---~~~~~~~tviivtHd~~~~~~~d~i-~~l~~ 233 (290)
T 2bbs_A 174 VYKDADLY--------LLDSPF--GYLDVLTE------KEIFESCV---CKLMANKTRILVTSKMEHLKKADKI-LILHE 233 (290)
T ss_dssp HHSCCSEE--------EEESTT--TTCCHHHH------HHHHHHCC---CCCTTTSEEEEECCCHHHHHHSSEE-EEEET
T ss_pred HHCCCCEE--------EEECCc--ccCCHHHH------HHHHHHHH---HHhhCCCEEEEEecCHHHHHcCCEE-EEEEC
Confidence 99999999 555555 77774433 34444321 112358999999996 334569999 57999
Q ss_pred CEEeeeCCcccccC
Q 015952 296 GELLGIPPAKQIFD 309 (397)
Q Consensus 296 G~iv~~g~~~el~~ 309 (397)
|+++..|++++++.
T Consensus 234 G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 234 GSSYFYGTFSELQN 247 (290)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CeEEEeCCHHHHhh
Confidence 99999999988753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=349.88 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=160.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++|+++.|+ ... |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+ ...+
T Consensus 285 ~~~l~~~~l~~~~~--~~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~---~~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG--SFR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEW---DLTV 349 (538)
T ss_dssp CEEEEECCEEEEET--TEE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCC---CCCE
T ss_pred CeEEEEeeEEEEEC--CEE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEE---CceE
Confidence 35799999999995 223 889999999999999999999999999999999999 99999987 3579
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
||+||++..+. .+||.+++...........+.+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 350 ~~v~Q~~~~~~---~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lL--- 423 (538)
T 1yqt_A 350 AYKPQYIKADY---EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIY--- 423 (538)
T ss_dssp EEECSSCCCCC---SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEE---
T ss_pred EEEecCCcCCC---CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE---
Confidence 99999987644 68998887643111111134677889999994 446678899999999999999999999999
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCC
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPP 303 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~ 303 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++ |+++..|+
T Consensus 424 -----lLDEPt--~~LD~~~~~--~i~~~l~~l~------~~~g~tvi~vsHd~~~~~~~~drv-~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 424 -----LLDEPS--AYLDVEQRL--AVSRAIRHLM------EKNEKTALVVEHDVLMIDYVSDRL-MVFEGEPGKYGRALP 487 (538)
T ss_dssp -----EEECTT--TTCCHHHHH--HHHHHHHHHH------HHHTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECC
T ss_pred -----EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcceEeecCC
Confidence 666666 777755443 3334443331 1358999999995 888999999 56886 78888899
Q ss_pred ccccc
Q 015952 304 AKQIF 308 (397)
Q Consensus 304 ~~el~ 308 (397)
+++++
T Consensus 488 ~~~~~ 492 (538)
T 1yqt_A 488 PMGMR 492 (538)
T ss_dssp CEEHH
T ss_pred HHHHH
Confidence 98775
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=352.13 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=161.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
.+++++|++++|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+ ...+|
T Consensus 356 ~~l~~~~l~~~~~~--~~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~---~~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS--FK-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEW---DLTVA 420 (607)
T ss_dssp EEEEECCEEEECSS--CE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCC---CCCEE
T ss_pred eEEEEeceEEEecc--eE-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEE---eeEEE
Confidence 47999999999953 23 889999999999999999999999999999999999 99999987 35799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
|+||++..+. .+||.+++...........+++.++++.+++.+ ..+++.+|||||||||+|||||+.+|++|
T Consensus 421 ~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL---- 493 (607)
T 3bk7_A 421 YKPQYIKAEY---EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY---- 493 (607)
T ss_dssp EECSSCCCCC---SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE----
T ss_pred EEecCccCCC---CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE----
Confidence 9999987654 689999886531111112356778999999944 46678899999999999999999999999
Q ss_pred ccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCCc
Q 015952 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPPA 304 (397)
Q Consensus 229 P~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~~ 304 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||+ ++|++ |+++..|++
T Consensus 494 ----lLDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tvi~vsHd~~~~~~~adrv-~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 494 ----LLDEPS--AYLDVEQRL--AVSRAIRHLM------EKNEKTALVVEHDVLMIDYVSDRL-IVFEGEPGRHGRALPP 558 (607)
T ss_dssp ----EEECTT--TTCCHHHHH--HHHHHHHHHH------HHTTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred ----EEeCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEcCCcceEEecCCH
Confidence 556666 777755443 3344444331 2368999999995 888899999 56885 888888998
Q ss_pred ccccC
Q 015952 305 KQIFD 309 (397)
Q Consensus 305 ~el~~ 309 (397)
++++.
T Consensus 559 ~~~~~ 563 (607)
T 3bk7_A 559 MGMRE 563 (607)
T ss_dssp EEHHH
T ss_pred HHHHh
Confidence 87753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=373.91 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=181.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEE
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
...+..++..+.+..|+.++++.+++.+.. ....|+++||+|+|+++....+ |+|+||+|++||++||
T Consensus 345 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~i 421 (1284)
T 3g5u_A 345 SPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVAL 421 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEE
Confidence 345566777788899999999876653220 1235999999999964321122 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--C
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--A 176 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~ 176 (397)
|||||||||||+++|+|+++ |++|+|.++|. ++.||||+|++.++. .||+||+.++.. .
T Consensus 422 vG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~----~ti~eNi~~g~~~~~ 492 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA----TTIAENIRYGREDVT 492 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS----SCHHHHHHHHCSSCC
T ss_pred ECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC----ccHHHHHhcCCCCCC
Confidence 99999999999999999999 99999999997 357999999999986 599999999864 2
Q ss_pred hhhHHHHH-----HHHHHHCCCc---ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 177 SDNINMIK-----LWIMEGVRHG---ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 177 ~~~~~~~~-----~~ll~~vgl~---~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
.++..+.+ .+.++.+..+ ....++.+||||||||++|||||+.+|+|| +||||| ++||+.++
T Consensus 493 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~il--------iLDEpt--s~LD~~~~ 562 (1284)
T 3g5u_A 493 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SALDTESE 562 (1284)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEE--------EEESTT--CSSCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEE--------EEECCC--CCCCHHHH
Confidence 22222211 1223333221 123457789999999999999999999999 666666 78886544
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
. ...+.+.+ ..+|+|+|+|||+ .....|||| ++|++|++++.|++++++..
T Consensus 563 ~--~i~~~l~~--------~~~~~t~i~itH~l~~i~~~d~i-~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 563 A--VVQAALDK--------AREGRTTIVIAHRLSTVRNADVI-AGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp H--HHHHHHHH--------HHTTSEEEEECSCHHHHTTCSEE-EECSSSCCCCEECHHHHHHT
T ss_pred H--HHHHHHHH--------HcCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhC
Confidence 3 22233322 2468999999996 555669999 57999999999999998754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=373.14 Aligned_cols=234 Identities=12% Similarity=0.175 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCc
Q 015952 45 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsG 115 (397)
+....+..|+.++++.+++.... ....++++||+|+|+++....+ |+|+||+|++||++||+||||||
T Consensus 995 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsG 1071 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTT
T ss_pred HHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCC
Confidence 45566788889988876653221 1235999999999964321112 99999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHH
Q 015952 116 KSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL 185 (397)
Q Consensus 116 KSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~ 185 (397)
||||+++|+|+++ |++|+|.++|. ++++|||||++.++. .|++||+.++........+.+.
T Consensus 1072 KSTl~~~l~g~~~-----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~----~ti~eNi~~~~~~~~~~~~~i~ 1142 (1284)
T 3g5u_A 1072 KSTVVQLLERFYD-----PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD----CSIAENIAYGDNSRVVSYEEIV 1142 (1284)
T ss_dssp HHHHHHHHTTSSC-----CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS----SBHHHHHTCCCSSCCCCHHHHH
T ss_pred HHHHHHHHhcCcC-----CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc----ccHHHHHhccCCCCCCCHHHHH
Confidence 9999999999999 99999999997 467999999998875 6999999987542111112233
Q ss_pred HHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHH
Q 015952 186 WIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 253 (397)
Q Consensus 186 ~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~ 253 (397)
+.++..++.+ ...++.+|||||||||+|||||+.+|++| +||||| ++||..++. ..
T Consensus 1143 ~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iL--------iLDEpT--s~lD~~~~~--~i 1210 (1284)
T 3g5u_A 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL--------LLDEAT--SALDTESEK--VV 1210 (1284)
T ss_dssp HHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSE--------EEESCS--SSCCHHHHH--HH
T ss_pred HHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HH
Confidence 3444444311 12345689999999999999999999999 666667 788865544 23
Q ss_pred HHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 254 NQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 254 ~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
.+.+.+. .+|+|||+|||| .....|||| ++|++|++++.|++++++...
T Consensus 1211 ~~~l~~~--------~~~~tvi~isH~l~~i~~~dri-~vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1211 QEALDKA--------REGRTCIVIAHRLSTIQNADLI-VVIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp HHHHHHH--------SSSSCEEEECSCTTGGGSCSEE-EEEETBEEEEEECHHHHHHSC
T ss_pred HHHHHHh--------CCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 3333322 468999999996 445679999 579999999999999998654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=342.98 Aligned_cols=200 Identities=11% Similarity=0.029 Sum_probs=156.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
++++++|+++.|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++. .++
T Consensus 268 ~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQ--ILS 333 (538)
T ss_dssp EEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCC--CEE
T ss_pred ceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCe--eeE
Confidence 47899999999953 23 888899999999999999999999999999999999 99999998864 799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCCh-hhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDAS-DNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~-~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
|++|+..... ..||.+|+.+..... ......+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 334 ~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL--- 407 (538)
T 3ozx_A 334 YKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY--- 407 (538)
T ss_dssp EECSSCCCCC---SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE---
T ss_pred eechhccccc---CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE---
Confidence 9999876543 579999987643211 12234567889999994 456778999999999999999999999999
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCC
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPP 303 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~ 303 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++ |.....++
T Consensus 408 -----lLDEPT--~gLD~~~~~--~i~~~l~~l~------~~~g~tvi~vsHdl~~~~~~aDri-~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 408 -----VLDQPS--SYLDVEERY--IVAKAIKRVT------RERKAVTFIIDHDLSIHDYIADRI-IVFKGEPEKAGLATS 471 (538)
T ss_dssp -----EEESTT--TTCCHHHHH--HHHHHHHHHH------HHTTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECC
T ss_pred -----EEeCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcceeccCCC
Confidence 666666 777755443 3444444431 2468999999995 888999999 56875 44444455
Q ss_pred cc
Q 015952 304 AK 305 (397)
Q Consensus 304 ~~ 305 (397)
+.
T Consensus 472 ~~ 473 (538)
T 3ozx_A 472 PV 473 (538)
T ss_dssp CE
T ss_pred hH
Confidence 43
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=341.95 Aligned_cols=200 Identities=11% Similarity=0.084 Sum_probs=155.5
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCC-----cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~G-----e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
++++++|+....+ ++++||++.+| |+++|+||||||||||+|+|+|+++ |++|+.. ....++
T Consensus 350 ~~~~~~y~~~~~~-----l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~~---~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKT-----QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDI---PKLNVS 416 (608)
T ss_dssp SSSCCEECCEEEE-----CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCCC---CSCCEE
T ss_pred cceeEEecCcccc-----cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcCc---cCCcEE
Confidence 6678889643323 89999999999 7899999999999999999999999 9999842 245799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
|++|+..... ..|+.+++.............+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 417 ~~~q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lL---- 489 (608)
T 3j16_B 417 MKPQKIAPKF---PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIY---- 489 (608)
T ss_dssp EECSSCCCCC---CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEE----
T ss_pred EecccccccC---CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE----
Confidence 9999976543 46999987653321111234567889999994 456778999999999999999999999999
Q ss_pred ccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCCc
Q 015952 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPPA 304 (397)
Q Consensus 229 P~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~~ 304 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++ |+++..|+|
T Consensus 490 ----lLDEPT--~gLD~~~~~--~i~~ll~~l~------~~~g~tviivtHdl~~~~~~aDrv-ivl~~~~g~~~~~g~p 554 (608)
T 3j16_B 490 ----LIDEPS--AYLDSEQRI--ICSKVIRRFI------LHNKKTAFIVEHDFIMATYLADKV-IVFEGIPSKNAHARAP 554 (608)
T ss_dssp ----EECCTT--TTCCHHHHH--HHHHHHHHHH------HHHTCEEEEECSCHHHHHHHCSEE-EECEEETTTEEECCCC
T ss_pred ----EEECCC--CCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCCCeEEecCCh
Confidence 556666 777755443 3344444431 2358999999995 888999999 56886 899999999
Q ss_pred ccccC
Q 015952 305 KQIFD 309 (397)
Q Consensus 305 ~el~~ 309 (397)
++++.
T Consensus 555 ~~~~~ 559 (608)
T 3j16_B 555 ESLLT 559 (608)
T ss_dssp EEHHH
T ss_pred HHHhh
Confidence 88864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=340.01 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=147.7
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCc
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ 147 (397)
.++|+++|++|+|+++ .++ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~i-----L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQ-----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCS-----EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CC
T ss_pred CceEEEEeeEEEeCCCCcee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cc
Confidence 3589999999999642 334 999999999999999999999999999999999999 99999999874 36
Q ss_pred EEEEecCCCC-----CCC--------------------------C-----------------------------------
Q 015952 148 GTYFLQEYTI-----PRG--------------------------S----------------------------------- 161 (397)
Q Consensus 148 ig~v~Q~~~l-----~~~--------------------------~----------------------------------- 161 (397)
+||++|++.. ... .
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 9999997410 000 0
Q ss_pred -CCccHHHHHhcCCC-------------C--------------------------hhhHHHHHHHHHHHCCCcc---ccc
Q 015952 162 -NSFSLYDTRSLSDD-------------A--------------------------SDNINMIKLWIMEGVRHGE---LVI 198 (397)
Q Consensus 162 -~~ltv~eni~~~~~-------------~--------------------------~~~~~~~~~~ll~~vgl~~---~~~ 198 (397)
..+++.||+.++.. . .....+.+.++++.+|+.. ...
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 01123333332210 0 0011345778999999953 356
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
++.+|||||||||+|||||+.+|++| +||||| ++||... ...+.+.+ .+.+.|||+||
T Consensus 898 ~~~~LSGGQkQRVaLArAL~~~P~LL--------LLDEPT--~gLD~~s------~~~L~~~L------~~~g~tVIiIS 955 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTWQRPHLI--------VLDEPT--NYLDRDS------LGALSKAL------KEFEGGVIIIT 955 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCCSEE--------EEECGG--GTCCHHH------HHHHHHHH------HSCSSEEEEEC
T ss_pred CccccCHHHHHHHHHHHHHHhCCCEE--------EEECCc--cCCCHHH------HHHHHHHH------HHhCCEEEEEE
Confidence 78899999999999999999999999 666667 7888433 23333332 12357999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCC
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
|| ++..+|||+ ++|++|+++..|+
T Consensus 956 HD~e~v~~l~DrV-ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 956 HSAEFTKNLTEEV-WAVKDGRMTPSGH 981 (986)
T ss_dssp SCHHHHTTTCCEE-ECCBTTBCCC---
T ss_pred CCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 95 778999999 5699999988775
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=310.75 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=134.1
Q ss_pred CceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH----------------------cccCCCCCCCcccEEEECceeC---
Q 015952 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS----------------------KVFENDKFASERAQVTYNSSVG--- 146 (397)
Q Consensus 92 ~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~----------------------Gl~~~~~~~p~~G~I~i~G~~~--- 146 (397)
+|+||||+|++||+++|+||||||||||+|+|. |+.. ..|.|.+++...
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~------~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH------LDKVIDIDQSPIGRT 410 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG------CSEEEECCSSCSCSS
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc------cCceeEeccccCCCC
Confidence 399999999999999999999999999998754 3333 235666665410
Q ss_pred ------------------------------------------------cEEEEecCCCCCCC------------------
Q 015952 147 ------------------------------------------------DGTYFLQEYTIPRG------------------ 160 (397)
Q Consensus 147 ------------------------------------------------~ig~v~Q~~~l~~~------------------ 160 (397)
..|+++|+..+++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 12444444332210
Q ss_pred -----------CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeE
Q 015952 161 -----------SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVI 224 (397)
Q Consensus 161 -----------~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iL 224 (397)
...+|+.||+.+...... ..++.+.+..+++.. ..+++.+|||||||||+|||||+.+| ++|
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~ll 568 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASIPK--IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 568 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTCHH--HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEE
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHhhh--HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEE
Confidence 013688999887654222 234567888899943 35678899999999999999999887 599
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCE
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGE 297 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~ 297 (397)
+||||| ++||+.... ...+.+.++ .++|+|||+|||| .+...|||| ++| ++|+
T Consensus 569 --------llDEPt--~~LD~~~~~--~i~~~l~~l-------~~~g~tvi~vtHd~~~~~~~d~i-~~l~~~~g~~~G~ 628 (670)
T 3ux8_A 569 --------ILDEPT--TGLHVDDIA--RLLDVLHRL-------VDNGDTVLVIEHNLDVIKTADYI-IDLGPEGGDRGGQ 628 (670)
T ss_dssp --------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECCCHHHHTTCSEE-EEEESSSGGGCCE
T ss_pred --------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHhCCEE-EEecCCcCCCCCE
Confidence 556666 777755443 344444443 2459999999996 556789999 569 8999
Q ss_pred EeeeCCcccccCCC
Q 015952 298 LLGIPPAKQIFDIP 311 (397)
Q Consensus 298 iv~~g~~~el~~~~ 311 (397)
|++.|+++++...+
T Consensus 629 i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 629 IVAVGTPEEVAEVK 642 (670)
T ss_dssp EEEEECHHHHHTCT
T ss_pred EEEecCHHHHHhCC
Confidence 99999999997554
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=312.34 Aligned_cols=195 Identities=17% Similarity=0.209 Sum_probs=129.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHH---------------------HHHHcccCCCCCCCc-------ccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASE-------RAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl---------------------~~I~Gl~~~~~~~p~-------~G~I~i~G~ 144 (397)
|+||||+|++||+++|+||||||||||+ ++++|+.. |+ .|.|.++|.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 9999999999999999999999999998 89999998 87 556666665
Q ss_pred ------eCcEEEEecCCCCCCC----------------CCCccHHHHHhcCCC---Ch---hhHH------HHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRG----------------SNSFSLYDTRSLSDD---AS---DNIN------MIKLWIMEG 190 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~----------------~~~ltv~eni~~~~~---~~---~~~~------~~~~~ll~~ 190 (397)
+..+|+++|.+.++.. ...+||.||+.+... .. .... .....+++.
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3457777776554210 125689999887422 00 0000 011235889
Q ss_pred CCCcc--cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcc
Q 015952 191 VRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 266 (397)
Q Consensus 191 vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~ 266 (397)
+|+.+ ..+++.+|||||||||+|||||+.+|+ +| +||||| ++||+.... ...+.+.++
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lL--------lLDEPt--sgLD~~~~~--~l~~~l~~l------ 250 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY--------VLDEPS--IGLHQRDND--RLIATLKSM------ 250 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEE--------EEECTT--TTCCGGGHH--HHHHHHHHH------
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH------
Confidence 99954 367789999999999999999999998 99 666666 788866544 344555443
Q ss_pred cccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 267 SFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 267 ~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.++|+|||+|||| .....|||| ++| ++|++++.|++++++..+.
T Consensus 251 -~~~g~tvi~vtHd~~~~~~~d~i-i~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 251 -RDLGNTLIVVEHDEDTMLAADYL-IDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp -HHTTCEEEEECCCHHHHHHCSEE-EEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred -HHcCCEEEEEeCCHHHHhhCCEE-EEecccccccCCEEEEecCHHHHhcCch
Confidence 2468999999996 455679999 568 8999999999999887653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=308.63 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=145.2
Q ss_pred CeEEE--------EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE--
Q 015952 70 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 139 (397)
Q Consensus 70 ~~lel--------~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I-- 139 (397)
.+|++ +||+++|+....+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFV-----LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCCee-----eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35888 8999999643224 99999 999999999999999999999999999999 999996
Q ss_pred -------EECce------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccC
Q 015952 140 -------TYNSS------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIR 199 (397)
Q Consensus 140 -------~i~G~------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~ 199 (397)
.++|. +..+++++|...........|+.||+..... .+++.++++.+|+.+ ..++
T Consensus 151 ~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~-----~~~~~~~L~~lgL~~~~~~~ 225 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE-----VGKFEEVVKELELENVLDRE 225 (607)
T ss_dssp CHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC-----SSCHHHHHHHTTCTTGGGSB
T ss_pred ccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH-----HHHHHHHHHHcCCCchhCCC
Confidence 34553 1357899987543221112389998864211 234678999999944 5677
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. ++|+|||+|||
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lL--------lLDEPT--s~LD~~~~~--~l~~~L~~l~-------~~g~tvIivsH 286 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFY--------FFDEPS--SYLDIRQRL--KVARVIRRLA-------NEGKAVLVVEH 286 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHHH-------HTTCEEEEECS
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH-------hcCCEEEEEec
Confidence 8899999999999999999999999 555556 777754433 3445554441 35899999999
Q ss_pred h--hHHccccEEEEEeeCC
Q 015952 280 G--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G 296 (397)
| .+..+|||| ++|+++
T Consensus 287 dl~~~~~~adri-~vl~~~ 304 (607)
T 3bk7_A 287 DLAVLDYLSDVI-HVVYGE 304 (607)
T ss_dssp CHHHHHHHCSEE-EEEESC
T ss_pred ChHHHHhhCCEE-EEECCC
Confidence 5 778899999 568754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=304.67 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=141.1
Q ss_pred EEE-EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE---------EE
Q 015952 72 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 141 (397)
Q Consensus 72 lel-~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I---------~i 141 (397)
.++ +||+|+|++...+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFV-----LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcccc-----ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 456 6999999643224 99999 999999999999999999999999999999 999995 34
Q ss_pred Cce------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHH
Q 015952 142 NSS------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRN 208 (397)
Q Consensus 142 ~G~------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqk 208 (397)
+|. +..+++++|.....+.....++.+++.... ..+++.++++.+|+.. ..+++.+||||||
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 553 135789999754432111137888875321 1235678999999944 5667889999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++. +.|+|||+|||| ++..+|
T Consensus 165 QRv~iAraL~~~P~lL--------lLDEPT--s~LD~~~~~--~l~~~L~~l~-------~~g~tvi~vsHd~~~~~~~~ 225 (538)
T 1yqt_A 165 QRVAIAAALLRNATFY--------FFDEPS--SYLDIRQRL--NAARAIRRLS-------EEGKSVLVVEHDLAVLDYLS 225 (538)
T ss_dssp HHHHHHHHHHSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHHH-------HTTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH-------hcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 556666 777754433 3445554441 358999999995 888999
Q ss_pred cEEEEEeeCC
Q 015952 287 DRARIRTYLG 296 (397)
Q Consensus 287 DrI~v~l~~G 296 (397)
||| ++|++|
T Consensus 226 dri-~vl~~~ 234 (538)
T 1yqt_A 226 DII-HVVYGE 234 (538)
T ss_dssp SEE-EEEEEE
T ss_pred CEE-EEEcCc
Confidence 999 568754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-32 Score=297.60 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=146.8
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc-ccCCCCCCCcccEEEECceeCcE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G-l~~~~~~~p~~G~I~i~G~~~~i 148 (397)
..+...|++++|+ +..+ |+|+||+|++|++++|+||||||||||+|+|+| ... +. +.. + ..++
T Consensus 434 ~~L~~~~ls~~yg-~~~i-----L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~--~~~------~-~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKIL-----LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-GF--PTQ------E-ECRT 497 (986)
T ss_dssp CEEEEEEEEEEET-TEEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST-TC--CCT------T-TSCE
T ss_pred ceeEEeeEEEEEC-CEEe-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CC--ccc------c-ceeE
Confidence 3567779999995 3334 999999999999999999999999999999985 221 00 111 1 1247
Q ss_pred EEEecCC-CCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEe
Q 015952 149 TYFLQEY-TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (397)
Q Consensus 149 g~v~Q~~-~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLl 225 (397)
+|++|++ .++. .+|+.+|+.+.... . ++++.++++.+|+. . ..+++.+||||||||++|||||+.+|++|
T Consensus 498 ~~v~q~~~~~~~---~ltv~e~l~~~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lL- 570 (986)
T 2iw3_A 498 VYVEHDIDGTHS---DTSVLDFVFESGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADIL- 570 (986)
T ss_dssp EETTCCCCCCCT---TSBHHHHHHTTCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEE-
T ss_pred EEEccccccccc---CCcHHHHHHHhhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE-
Confidence 8899875 4444 68999999762111 1 56788899999993 3 46678899999999999999999999999
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-eeC
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GIP 302 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g 302 (397)
+||||| ++||.... +.+.+++ .. .|+|||+|||+ ++..+|||| ++|++|+++ ..|
T Consensus 571 -------LLDEPT--s~LD~~~~------~~l~~~L----~~--~g~tvIivSHdl~~l~~~adri-i~L~~G~iv~~~G 628 (986)
T 2iw3_A 571 -------LLDEPT--NHLDTVNV------AWLVNYL----NT--CGITSITISHDSVFLDNVCEYI-INYEGLKLRKYKG 628 (986)
T ss_dssp -------EEESTT--TTCCHHHH------HHHHHHH----HH--SCSEEEEECSCHHHHHHHCSEE-EEEETTEEEEEES
T ss_pred -------EEECCc--cCCCHHHH------HHHHHHH----Hh--CCCEEEEEECCHHHHHHhCCEE-EEEECCeeecCCC
Confidence 556666 77774433 3444443 22 58999999995 888999999 579999997 578
Q ss_pred Cccccc
Q 015952 303 PAKQIF 308 (397)
Q Consensus 303 ~~~el~ 308 (397)
++++++
T Consensus 629 ~~~e~~ 634 (986)
T 2iw3_A 629 NFTEFV 634 (986)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 877654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=295.53 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=137.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHH---------HHHHcccCCC-CCCCcccE------EEECce------------
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------NRISKVFEND-KFASERAQ------VTYNSS------------ 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl---------~~I~Gl~~~~-~~~p~~G~------I~i~G~------------ 144 (397)
|+||||+|++|++++|+||||||||||+ +++.+..... .+.+.+|. +.++..
T Consensus 600 Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at 679 (916)
T 3pih_A 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPAT 679 (916)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHH
T ss_pred ccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccc
Confidence 9999999999999999999999999997 4444433200 00122332 222221
Q ss_pred ---------------------------------------eCcEEEEecCCCCCCC-------------------------
Q 015952 145 ---------------------------------------VGDGTYFLQEYTIPRG------------------------- 160 (397)
Q Consensus 145 ---------------------------------------~~~ig~v~Q~~~l~~~------------------------- 160 (397)
....|+++|+..+++.
T Consensus 680 ~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~ 759 (916)
T 3pih_A 680 YTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGK 759 (916)
T ss_dssp HSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTB
T ss_pred hhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccC
Confidence 0124667666544321
Q ss_pred ----CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccc
Q 015952 161 ----SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVI 231 (397)
Q Consensus 161 ----~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~ 231 (397)
...+|+.+++.|..... ...++.++|+.+||++ ...++.+|||||||||+|||||+.+| ++|
T Consensus 760 ~i~~vl~~tv~eal~f~~~~~--~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL------- 830 (916)
T 3pih_A 760 NISDILDMTVDEALEFFKNIP--SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY------- 830 (916)
T ss_dssp CHHHHHSSBHHHHHHHTTTCH--HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE-------
T ss_pred CHHHHhhCCHHHHHHHHhcch--hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE-------
Confidence 01356777776654321 2345678999999964 35678899999999999999999876 799
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCc
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPA 304 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~ 304 (397)
+||||| ++||..... ..++.+.++ .++|.|||+|||+ ++...|||| ++| ++|+|++.|++
T Consensus 831 -ILDEPT--sGLD~~~~~--~L~~lL~~L-------~~~G~TVIvI~HdL~~i~~ADrI-ivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 831 -ILDEPT--VGLHFEDVR--KLVEVLHRL-------VDRGNTVIVIEHNLDVIKNADHI-IDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp -EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECCCHHHHTTCSEE-EEEESSSGGGCCEEEEEESH
T ss_pred -EEECCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHHhCCEE-EEecCCCCCCCCEEEEEcCH
Confidence 666667 788855433 344444443 2469999999996 566779999 569 89999999999
Q ss_pred ccccCCCC
Q 015952 305 KQIFDIPE 312 (397)
Q Consensus 305 ~el~~~~~ 312 (397)
++++..+.
T Consensus 898 eel~~~~~ 905 (916)
T 3pih_A 898 EEIAKNPH 905 (916)
T ss_dssp HHHHSCTT
T ss_pred HHHHhCCc
Confidence 99998764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=289.64 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=86.9
Q ss_pred HHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCC---CCeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 182 MIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCE---PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 182 ~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~---P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
+++.++++.++|.. ...++.+|||||||||+|||+|+.+ |++| +||||| ++||..... ...+.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--------ILDEPT--sGLD~~~~~--~l~~l 775 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVY--------VLDEPT--TGLHPADVE--RLQRQ 775 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEE--------EEECTT--TTCCHHHHH--HHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEE--------EEECCC--CCCCHHHHH--HHHHH
Confidence 46788999999965 3667889999999999999999997 6999 666667 777754333 33444
Q ss_pred HHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
+.++ .+.|.|||+|||| +....|||| ++| ++|+|++.|++++++..+.
T Consensus 776 L~~L-------~~~G~tVIvisHdl~~i~~aDri-i~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 776 LVKL-------VDAGNTVIAVEHKMQVVAASDWV-LDIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp HHHH-------HHTTCEEEEECCCHHHHTTCSEE-EEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred HHHH-------HhCCCEEEEEcCCHHHHHhCCEE-EEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 4433 2469999999996 444889999 569 7999999999999987654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=290.24 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=169.9
Q ss_pred CCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhcccccc----------------------------
Q 015952 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQSYDQL---------------------------- 64 (397)
Q Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---------------------------- 64 (397)
==|||||++||+.....+++.+.+++.. .+.+. ..+....+
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt 606 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLT 606 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHH
Confidence 3499999999999999999999888642 11111 11111111
Q ss_pred ------------cc----CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-ccc
Q 015952 65 ------------RT----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVF 127 (397)
Q Consensus 65 ------------~~----~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~ 127 (397)
+. ...+.|+++|++. . . |+||||+|++|++++|+|+||||||||+++|. |.+
T Consensus 607 ~~~l~g~~~~~~~~~~~~~~~~~L~v~~l~~-----~-~-----Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l 675 (972)
T 2r6f_A 607 GQYLSGKKFIPIPAERRRPDGRWLEVVGARE-----H-N-----LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675 (972)
T ss_dssp HHHHHTSSCCCCCSSCCCCCSCEEEEEEECS-----S-S-----CCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHH
T ss_pred HHHhcCCccccCccccccccceEEEEecCcc-----c-c-----cccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 00 0124577777641 1 2 99999999999999999999999999999864 322
Q ss_pred ----CCCCCCCccc-------------EEEECcee-----------------------------CcEEEEecCCCCCCC-
Q 015952 128 ----ENDKFASERA-------------QVTYNSSV-----------------------------GDGTYFLQEYTIPRG- 160 (397)
Q Consensus 128 ----~~~~~~p~~G-------------~I~i~G~~-----------------------------~~ig~v~Q~~~l~~~- 160 (397)
.+.. +..| .|.+++.. +.+||++|.+.+...
T Consensus 676 ~~~l~~~~--~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~g 753 (972)
T 2r6f_A 676 AQKLHRAK--AKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKG 753 (972)
T ss_dssp HHHHHCCC--CCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTT
T ss_pred HHhhcCCC--CCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhccccccccccccc
Confidence 1000 1223 35666531 224677765432100
Q ss_pred ----------------------------------------------C----CCccHHHHHhcCCCChhhHHHHHHHHHHH
Q 015952 161 ----------------------------------------------S----NSFSLYDTRSLSDDASDNINMIKLWIMEG 190 (397)
Q Consensus 161 ----------------------------------------------~----~~ltv~eni~~~~~~~~~~~~~~~~ll~~ 190 (397)
+ ..+|+.+++.+..... . ..++.++++.
T Consensus 754 grC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~-~-~~~~~~~L~~ 831 (972)
T 2r6f_A 754 GRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP-K-IKRKLETLYD 831 (972)
T ss_dssp TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH-H-HHHHHHHHHH
T ss_pred ccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch-h-HHHHHHHHHH
Confidence 0 0346667766543321 1 2345678999
Q ss_pred CCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCc
Q 015952 191 VRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY 265 (397)
Q Consensus 191 vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~ 265 (397)
++|.. ...++.+|||||||||+|||||+.+| ++| +||||| ++||..... ...+.+.++
T Consensus 832 ~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--------ILDEPT--sGLD~~~~~--~l~~lL~~L----- 894 (972)
T 2r6f_A 832 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY--------ILDEPT--TGLHVDDIA--RLLDVLHRL----- 894 (972)
T ss_dssp TTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEE--------EEECTT--TTCCHHHHH--HHHHHHHHH-----
T ss_pred cCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-----
Confidence 99954 46678899999999999999999875 999 666666 777754333 334444443
Q ss_pred ccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 266 LSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 266 ~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.|.|||+|||+ +....|||| ++| ++|++++.|++++++..+.
T Consensus 895 --~~~G~TVIvisHdl~~i~~aDrI-ivL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 895 --VDNGDTVLVIEHNLDVIKTADYI-IDLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp --HHTTCEEEEECCCHHHHTTCSEE-EEECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred --HhCCCEEEEEcCCHHHHHhCCEE-EEEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 2469999999996 455789999 569 7999999999999987653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=283.63 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=130.9
Q ss_pred eEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE-----------ECce
Q 015952 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNSS 144 (397)
Q Consensus 76 nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~-----------i~G~ 144 (397)
|++++|+.+... |++++ .+++||+++|+||||||||||+|+|+|+++ |++|+|. +.|.
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRGS 150 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTTS
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecCh
Confidence 568889655433 66676 589999999999999999999999999999 9999983 3332
Q ss_pred e----------CcE--EEEecCCCCCC---CCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 145 V----------GDG--TYFLQEYTIPR---GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ~----------~~i--g~v~Q~~~l~~---~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
. ..+ .+.+|...... .....++.+++..... ...+++.++++.+++. ...+++.+||||||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~ 227 (608)
T 3j16_B 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME---KSPEDVKRYIKILQLENVLKRDIEKLSGGEL 227 (608)
T ss_dssp THHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC---SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHH
T ss_pred hhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh---hHHHHHHHHHHHcCCcchhCCChHHCCHHHH
Confidence 0 111 22233211100 0011245554433211 1235678899999994 45677899999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ ++..+|
T Consensus 228 Qrv~iAraL~~~p~ll--------llDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tvi~vtHdl~~~~~~~ 288 (608)
T 3j16_B 228 QRFAIGMSCVQEADVY--------MFDEPS--SYLDVKQRL--NAAQIIRSL-------LAPTKYVICVEHDLSVLDYLS 288 (608)
T ss_dssp HHHHHHHHHHSCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHGG-------GTTTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEE--------EEECcc--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 555556 777754333 334444443 2468999999995 888999
Q ss_pred cEEEEEeeCCE
Q 015952 287 DRARIRTYLGE 297 (397)
Q Consensus 287 DrI~v~l~~G~ 297 (397)
||| ++|++|.
T Consensus 289 drv-~vl~~~~ 298 (608)
T 3j16_B 289 DFV-CIIYGVP 298 (608)
T ss_dssp SEE-EEEESCT
T ss_pred CEE-EEEeCCc
Confidence 999 4687754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=278.85 Aligned_cols=185 Identities=15% Similarity=0.050 Sum_probs=131.9
Q ss_pred EeEEEEECCCceEeeccCceeeeEEE-cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE-----------EEC
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDV-PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 142 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I-~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I-----------~i~ 142 (397)
++++.+|+.+. ++...|.+ ++||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35788997655 45455644 4899999999999999999999999999 999998 566
Q ss_pred cee------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHH
Q 015952 143 SSV------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNR 209 (397)
Q Consensus 143 G~~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQ 209 (397)
|.. ..+...+|...........++.+++.... .++++.++++.+++.. ..+++.+|||||||
T Consensus 71 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 71 GKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp TSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred CeeHHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 641 23444444432221111236776653211 1234678899999944 46678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||+|||+ ++..+||
T Consensus 146 rv~iA~aL~~~p~il--------llDEPt--s~LD~~~~~--~l~~~l~~l--------~~g~tii~vsHdl~~~~~~~d 205 (538)
T 3ozx_A 146 RLLVAASLLREADVY--------IFDQPS--SYLDVRERM--NMAKAIREL--------LKNKYVIVVDHDLIVLDYLTD 205 (538)
T ss_dssp HHHHHHHHHSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH--------CTTSEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHH--------hCCCEEEEEEeChHHHHhhCC
Confidence 999999999999999 555556 777754333 344445443 238999999995 8889999
Q ss_pred EEEEEeeCCE
Q 015952 288 RARIRTYLGE 297 (397)
Q Consensus 288 rI~v~l~~G~ 297 (397)
||+ +|++|.
T Consensus 206 ~i~-vl~~~~ 214 (538)
T 3ozx_A 206 LIH-IIYGES 214 (538)
T ss_dssp EEE-EEEEET
T ss_pred EEE-EecCCc
Confidence 994 587643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-32 Score=281.66 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=149.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-E-EEECce-e
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSS-V 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~-I~i~G~-~ 145 (397)
.+|++++||+++|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |.++|. +
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLDPQ 178 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECCTT
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCCcc
Confidence 45788888887772 3899999999999999999999999999999999 9999 9 999985 4
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHH--HcCCC
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK--IGCEP 221 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA--L~~~P 221 (397)
+.++|+||++.++.....+++.+|+ ++... .....+++.++++.+|+....+ +.+|||||||||+|||| |+.+|
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCc
Confidence 6799999998543222246899998 65431 1111233556788888855444 78899999999999999 99999
Q ss_pred Ce----Eeeccccccccch-hhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--h------hHHccccE
Q 015952 222 SV----IRKVNFVIFVVDG-LAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--G------DLLSLTDR 288 (397)
Q Consensus 222 ~i----LllDEP~~siLDE-pT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~------~~~~~aDr 288 (397)
++ | +||| || ++||.. . +.+.+++ .+.++|+|+||| + ++.++|||
T Consensus 257 ~i~~sGL--------lLDEpPt--s~LD~~-~------~~l~~l~------~~~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 257 QVRRSGC--------IVDTPSI--SQLDEN-L------AELHHII------EKLNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHSCE--------EEECCCG--GGSCSS-C------HHHHHHH------HHTTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred ccCcceE--------EEeCCcc--cccChh-H------HHHHHHH------HHhCCCEEEEEccCchhhhHHHHHHhccc
Confidence 99 9 5555 56 788866 1 2222221 123779999999 3 45589999
Q ss_pred -----EEEEee-CCEEeeeCCcccc
Q 015952 289 -----ARIRTY-LGELLGIPPAKQI 307 (397)
Q Consensus 289 -----I~v~l~-~G~iv~~g~~~el 307 (397)
| ++|+ +|+++ .|+++++
T Consensus 314 ~~~~~v-i~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 314 LGNNNI-FFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HCGGGE-EEECCCTTCC-CCCHHHH
T ss_pred ccCCEE-EEEeCCCcEE-ECCHHHH
Confidence 9 5699 99999 8887655
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=239.43 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=124.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCC-----------------C----------------CCcccEE
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK-----------------F----------------ASERAQV 139 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~-----------------~----------------~p~~G~I 139 (397)
++++||+|.+| +++|+||||||||||+++|.++..... + .+.+|++
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i 129 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAA 129 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEE
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEE
Confidence 99999999999 999999999999999999988875210 0 1457899
Q ss_pred EECcee-----------CcEEEEecCCCCCCCCC--CccHHHHHhcCCC-------------------------------
Q 015952 140 TYNSSV-----------GDGTYFLQEYTIPRGSN--SFSLYDTRSLSDD------------------------------- 175 (397)
Q Consensus 140 ~i~G~~-----------~~ig~v~Q~~~l~~~~~--~ltv~eni~~~~~------------------------------- 175 (397)
.+||+. ..+++++|+..++...+ ...+.|++.....
T Consensus 130 ~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 209 (415)
T 4aby_A 130 RLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPTS 209 (415)
T ss_dssp EETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcc
Confidence 999983 23899999987754110 0122222211000
Q ss_pred ---------------------------ChhhHHHHHHHHHHHCCCcc------------------------cccCCC---
Q 015952 176 ---------------------------ASDNINMIKLWIMEGVRHGE------------------------LVIRRS--- 201 (397)
Q Consensus 176 ---------------------------~~~~~~~~~~~ll~~vgl~~------------------------~~~~~~--- 201 (397)
........+.+.++.+++.. ....+.
T Consensus 210 i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (415)
T 4aby_A 210 LVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEEL 289 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcc
Confidence 00001123344555555421 001111
Q ss_pred ----C-CChHHHHHHHHHHHHcCCC--CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 202 ----D-SSSLRNRMRCKAHKIGCEP--SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 202 ----~-lSGGqkQRvaIArAL~~~P--~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
. +|||||||++|||+|+.+| ++| +||||| ++||..... ...+.+.++ .+|.||
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~L--------lLDEpt--~~LD~~~~~--~l~~~L~~l--------~~~~~v 349 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSV--------VFDEVD--AGIGGAAAI--AVAEQLSRL--------ADTRQV 349 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEE--------EESSTT--TTCCHHHHH--HHHHHHHHH--------TTTSEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH--------hCCCEE
Confidence 1 6999999999999999999 999 555556 677744333 233444333 358999
Q ss_pred EEEech-hHHccccEEEEEe----eCCEEeee
Q 015952 275 VVVTHG-DLLSLTDRARIRT----YLGELLGI 301 (397)
Q Consensus 275 IivTH~-~~~~~aDrI~v~l----~~G~iv~~ 301 (397)
|+|||+ .+...|||+ ++| ++|+++..
T Consensus 350 i~itH~~~~~~~~d~i-~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 350 LVVTHLAQIAARAHHH-YKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEECSCHHHHTTCSEE-EEEEEEEETTEEEEE
T ss_pred EEEeCcHHHHhhcCeE-EEEEEeccCCceEEE
Confidence 999996 667889999 569 99998775
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-30 Score=251.37 Aligned_cols=196 Identities=16% Similarity=0.101 Sum_probs=144.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccCC------CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEEC
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
....+..+++++.+..|+.++++.+++..... ..+|+++||+|+|+ ..+ |+++||+|++|++++|+|
T Consensus 61 ~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~~v-----L~~vsl~i~~Ge~vaIvG 133 (305)
T 2v9p_A 61 CATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--INA-----LKLWLKGIPKKNCLAFIG 133 (305)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--HHH-----HHHHHHTCTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--hhh-----hccceEEecCCCEEEEEC
Confidence 34456667777778889999988654432211 12589999999995 334 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHH-HHhcCCCChhhHHHHHHHHHH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKLWIME 189 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~e-ni~~~~~~~~~~~~~~~~ll~ 189 (397)
|||||||||+++|+|++ +|+| ++|++|++.++. .|+.+ |+.+...... .+.+.++
T Consensus 134 psGsGKSTLl~lL~gl~--------~G~I--------~~~v~q~~~lf~----~ti~~~ni~~~~~~~~----~~~~~i~ 189 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFL--------GGSV--------LSFANHKSHFWL----ASLADTRAALVDDATH----ACWRYFD 189 (305)
T ss_dssp SSSSSHHHHHHHHHHHH--------TCEE--------ECGGGTTSGGGG----GGGTTCSCEEEEEECH----HHHHHHH
T ss_pred CCCCcHHHHHHHHhhhc--------CceE--------EEEecCcccccc----ccHHHHhhccCccccH----HHHHHHH
Confidence 99999999999999997 4888 356889988775 47887 8887532222 3344555
Q ss_pred HCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 190 GVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 190 ~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
.+ +..... +..|||||||| ||||+.+|+|| + | ++||+..+... .
T Consensus 190 ~~-L~~gld-g~~LSgGqkQR---ARAll~~p~iL--------l----T--s~LD~~~~~~i--------------~--- 233 (305)
T 2v9p_A 190 TY-LRNALD-GYPVSIDRKHK---AAVQIKAPPLL--------V----T--SNIDVQAEDRY--------------L--- 233 (305)
T ss_dssp HT-TTGGGG-TCCEECCCSSC---CCCEECCCCEE--------E----E--ESSCSTTCGGG--------------G---
T ss_pred HH-hHccCC-ccCcCHHHHHH---HHHHhCCCCEE--------E----E--CCCCHHHHHHH--------------H---
Confidence 53 322111 77899999999 99999999999 5 5 88887665411 0
Q ss_pred CCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 270 DDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 270 ~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
.+||+ .+...|||| + |++|++++.|+++++
T Consensus 234 ------~ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 234 ------YLHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp ------GGTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred ------HHhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 12886 667899999 6 999999999998876
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-25 Score=201.73 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=93.7
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
||||+|++||+++|+||||||||||+|++.+-.. . +++. .-.|+++|++.-.. ..-++++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~------~~~d-~~~g~~~~~~~~~~--~~~~~~~~~---- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----V------ISSD-FCRGLMSDDENDQT--VTGAAFDVL---- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----E------EEHH-HHHHHHCSSTTCGG--GHHHHHHHH----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----E------EccH-HHHHHhcCcccchh--hHHHHHHHH----
Confidence 5899999999999999999999999998654322 1 2211 12266777643211 001122221
Q ss_pred CChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch-h-hhH
Q 015952 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-V-EKQ 252 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~-~-~~~ 252 (397)
..... .....+...........|||||||++||||++.+|++|++||| ++.||..+. .-.+.... . ...
T Consensus 63 ------~~~~~-~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP-t~~Ld~~~~-~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 63 ------HYIVS-KRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP-EKVCQERNK-NRTDRQVEEYVIRK 133 (171)
T ss_dssp ------HHHHH-HHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHHHHH-TCSSCCCCHHHHHH
T ss_pred ------HHHHH-HHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC-HHHHHHHHh-cccCCCCCHHHHHH
Confidence 11222 2233455444445566799999999999999999999966666 444443321 00000000 0 011
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
..+.+.+++.. + .++|+|+|++||+ +....++++
T Consensus 134 ~~~~l~~~l~~--l-~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 134 HTQQMKKSIKG--L-QREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHSTT--H-HHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHhhhhhhh--H-HhcCCcEEEEeCCHHHhhhhhhc
Confidence 23444444311 1 2359999999996 333334443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-27 Score=216.02 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=89.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc-------eeCcEEEEecCC--CCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-------SVGDGTYFLQEY--TIPRGSNS 163 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G-------~~~~ig~v~Q~~--~l~~~~~~ 163 (397)
|+++ ++|++++|+||||||||||+|+|+|+ + |++|+|.... .++.+||+||++ ++.. ..
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~--~~ 83 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDP--YL 83 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCSEEEEEECSCCTTCCCCSSCC------CT--TT
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeeeeEEecCCchhhhcceEEecCCHHHHHHH--HH
Confidence 8885 89999999999999999999999999 9 9999995311 134689999986 2200 00
Q ss_pred ccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 164 ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
..+.+.+.- ... ...+.++++. ++ |||||++|||||+.+|++| +||||| ++
T Consensus 84 ~~~~~~~~~-~~~----~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~ll--------lLDEPt--s~- 134 (208)
T 3b85_A 84 RPLHDALRD-MVE----PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFV--------ILDEAQ--NT- 134 (208)
T ss_dssp HHHHHHHTT-TSC----TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEE--------EECSGG--GC-
T ss_pred HHHHHHHHH-hcc----HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEE--------EEeCCc--cc-
Confidence 122222210 001 1234555655 43 9999999999999999999 666667 33
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEechhHHccccEEEEEeeCCEE
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~~~~~aDrI~v~l~~G~i 298 (397)
. .+.+.+++ ...++|+||| +|||. ..++++ ...++|..
T Consensus 135 ---~------~~~l~~~l----~~l~~g~tii-vtHd~--~~~~~~-~~~~~G~~ 172 (208)
T 3b85_A 135 ---T------PAQMKMFL----TRLGFGSKMV-VTGDI--TQVDLP-GGQKSGLR 172 (208)
T ss_dssp ---C------HHHHHHHH----TTBCTTCEEE-EEEC---------------CCH
T ss_pred ---c------HHHHHHHH----HHhcCCCEEE-EECCH--HHHhCc-CCCCCcHH
Confidence 1 12333333 1124589999 99972 123445 23566654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-24 Score=211.44 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=62.4
Q ss_pred cCCCCCChHHHHHHHHHHHHc------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 198 IRRSDSSSLRNRMRCKAHKIG------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
.++.+|||||||||+|||||+ .+|++| +||||| ++||+.... ...+.+.++ .+.|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~l--------llDEpt--~~LD~~~~~--~~~~~l~~l-------~~~g 335 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAF--------FIDEGF--SSLDTENKE--KIASVLKEL-------ERLN 335 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEE--------EEESCC--TTSCHHHHH--HHHHHHHGG-------GGSS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhCC
Confidence 457789999999999999999 799999 555555 667644333 234444433 2469
Q ss_pred ceEEEEech-hHHccccEEEEEeeCCEEee
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~~G~iv~ 300 (397)
+|||+|||+ .....|||+ ++|++|+++.
T Consensus 336 ~tvi~itH~~~~~~~~d~~-~~l~~G~i~~ 364 (365)
T 3qf7_A 336 KVIVFITHDREFSEAFDRK-LRITGGVVVN 364 (365)
T ss_dssp SEEEEEESCHHHHTTCSCE-EEEETTEEC-
T ss_pred CEEEEEecchHHHHhCCEE-EEEECCEEEe
Confidence 999999996 558889999 5799999975
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-26 Score=229.74 Aligned_cols=170 Identities=12% Similarity=0.079 Sum_probs=128.9
Q ss_pred ceeeeEEEcCCc--------------------EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeC-cEEEE
Q 015952 93 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG-DGTYF 151 (397)
Q Consensus 93 L~~isl~I~~Ge--------------------~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~-~ig~v 151 (397)
|++|||+|++|+ +++|+||||||||||+|+|+|+++ |++|+|.++|..- +.+++
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~~~~v 113 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTMERHP 113 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----CCCEE
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecceeEEe
Confidence 999999999999 999999999999999999999999 9999999998631 23889
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChH--HHHHHHHHHHHcC----------
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL--RNRMRCKAHKIGC---------- 219 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGG--qkQRvaIArAL~~---------- 219 (397)
+|++. ++ .++++||..++.. +..+.++++.+++......+. +||| |+||++|||||+.
T Consensus 114 ~q~~~-~~---~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 114 YKHPN-IP---NVVFWDLPGIGST-----NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp EECSS-CT---TEEEEECCCGGGS-----SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccc-cC---CeeehHhhcccch-----HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEe
Confidence 99854 33 5899999877632 134677899999854333344 8999 9999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc--ccCCceEEEEech----hHHccccEE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS--FRDDKPVVVVTHG----DLLSLTDRA 289 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~--~~~g~TVIivTH~----~~~~~aDrI 289 (397)
+|+++ +||||| ++||+.... ...+.+.++....+.. .....+|+++||. .+.++||++
T Consensus 184 kpdll--------lLDEPt--sgLD~~~~~--~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 184 KVDSD--------ITNEAD--GEPQTFDKE--KVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CHHHH--------HHHHHT--TCCTTCCHH--HHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCccc--------ccCccc--ccCCHHHHH--HHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 88888 888888 899987765 3444444431000000 1124678899992 489999999
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=203.87 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=57.0
Q ss_pred CCCCCChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 199 RRSDSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
++..||||||||++|||||+ .+|++| +||||| ++||+.... ...+.+.++ .+|+||
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~l--------llDEp~--~~LD~~~~~--~l~~~l~~~--------~~~~~v 275 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFY--------VLDEVD--SPLDDYNAE--RFKRLLKEN--------SKHTQF 275 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEE--------EEESCC--SSCCHHHHH--HHHHHHHHH--------TTTSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHh--------cCCCeE
Confidence 45678999999999999997 689999 555555 667644332 233444332 357899
Q ss_pred EEEech-hHHccccEE-EEEeeCCEE
Q 015952 275 VVVTHG-DLLSLTDRA-RIRTYLGEL 298 (397)
Q Consensus 275 IivTH~-~~~~~aDrI-~v~l~~G~i 298 (397)
|++||+ ++...||++ .++|.+|..
T Consensus 276 i~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 276 IVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp EEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred EEEECCHHHHhhCceEEEEEEeCCEE
Confidence 999996 778899986 235777754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-24 Score=210.65 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=121.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~ 156 (397)
++.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.. ..++|++|++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 456899999999999999999999999999999999 999999998851 25899999987
Q ss_pred -CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--eEeecccccc
Q 015952 157 -IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIF 232 (397)
Q Consensus 157 -l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~s 232 (397)
+++ .+++++|+.++.... ....+++.+|+.+ ....+.+|| |||++|||||+.+|+ +|
T Consensus 165 ~~~~---~~~v~e~l~~~~~~~-----~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL-------- 225 (302)
T 3b9q_A 165 KAKA---ATVLSKAVKRGKEEG-----YDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL-------- 225 (302)
T ss_dssp CCCH---HHHHHHHHHHHHHTT-----CSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE--------
T ss_pred ccCH---HHHHHHHHHHHHHcC-----CcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE--------
Confidence 655 579999997642110 0012456667633 344566778 999999999999999 99
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-h----------hHHccccEEEEEeeCCEEe
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-G----------DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~----------~~~~~aDrI~v~l~~G~iv 299 (397)
+|| || +++|.... .+.+. ...|.|+|++|| | .+...++.| .++..|+.+
T Consensus 226 vLD-pt--sglD~~~~-----~~~~~---------~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi-~~i~~Ge~~ 285 (302)
T 3b9q_A 226 VLD-GN--TGLNMLPQ-----AREFN---------EVVGITGLILTKLDGSARGGCVVSVVEELGIPV-KFIGVGEAV 285 (302)
T ss_dssp EEE-GG--GGGGGHHH-----HHHHH---------HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCE-EEEECSSSG
T ss_pred EEe-CC--CCcCHHHH-----HHHHH---------HhcCCCEEEEeCCCCCCccChheehHHHHCCCE-EEEeCCCCh
Confidence 777 77 77774321 12221 135889999999 2 233556678 468888653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-25 Score=218.40 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=107.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEE-----------------------EcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~-----------------------I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
...|+++||++.|. ++ ++++++. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~---p~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PL-----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh---hH-----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34689999999993 23 5666654 89999999999999999999999999
Q ss_pred ccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCcccccCCCC
Q 015952 126 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELVIRRSD 202 (397)
Q Consensus 126 l~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~~~~~~~~~ 202 (397)
+++ |+.|. ..+++|+|++.+++ . |+.+|+.+... +.....+.+.++++.++-+....++..
T Consensus 113 ll~-----~~~G~-------~~v~~v~qd~~~~~---~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~ 176 (312)
T 3aez_A 113 LLA-----RWDHH-------PRVDLVTTDGFLYP---N-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPV 176 (312)
T ss_dssp HHH-----TSTTC-------CCEEEEEGGGGBCC---H-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEE
T ss_pred hcc-----ccCCC-------CeEEEEecCccCCc---c-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCccc
Confidence 999 87664 46899999987765 4 99999876431 222234556677777774333355678
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+||||+||+++|||++.+|+|||+|||
T Consensus 177 lS~G~~qRv~~a~al~~~p~ilIlDep 203 (312)
T 3aez_A 177 YSHLHYDIIPGAEQVVRHPDILILEGL 203 (312)
T ss_dssp EETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred CChhhhhhhhhHHHhccCCCEEEECCc
Confidence 999999999999999999999966666
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-25 Score=202.76 Aligned_cols=166 Identities=11% Similarity=-0.034 Sum_probs=97.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc------eeCcEEEEecCCCCCCCCCCccH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS------SVGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G------~~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
++| .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+ .++.++|+||++.++. .+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~---~~~~ 81 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ---QLID 81 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST-----TCEECCCEESSCCCTTCCBTTTBEECCHHHHH---HHHH
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-----ceEEcccccccCCcccccCCCeeEecCHHHHH---HHHh
Confidence 888 7999999999999999999999999999986 3322222222 2356899999987665 5677
Q ss_pred HHHHhcCC------C----ChhhHHHHHHHH------HHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 167 YDTRSLSD------D----ASDNINMIKLWI------MEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 167 ~eni~~~~------~----~~~~~~~~~~~l------l~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+++.... . ...+.++++.+. ++.+|+. ....++..+| ||+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~----- 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQ----- 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHH-----
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHH-----
Confidence 77653221 1 223334444443 3334442 2234455555 566666666
Q ss_pred cccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 230 ~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
+||||| ++++..++. ...+.+.+++.. +..+.|.|+|+|||| ++.++||||+ +|.
T Consensus 146 ---~LDep~--~~l~~~~d~--~~~~~l~~~l~~--l~~~~g~tvi~vtHdl~~~~~~~d~i~-~l~ 202 (207)
T 1znw_A 146 ---DLQARL--IGRGTETAD--VIQRRLDTARIE--LAAQGDFDKVVVNRRLESACAELVSLL-VGT 202 (207)
T ss_dssp ---HHHHHH--HTTSCSCHH--HHHHHHHHHHHH--HHGGGGSSEEEECSSHHHHHHHHHHHH-C--
T ss_pred ---HHHHHH--HhcCCCCHH--HHHHHHHHHHHH--HhhhccCcEEEECCCHHHHHHHHHHHH-Hhc
Confidence 888888 676543332 122222222200 112458999999995 8999999994 453
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-24 Score=220.10 Aligned_cols=189 Identities=10% Similarity=-0.030 Sum_probs=139.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++|+++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |++|.|.++|++
T Consensus 129 ~~~l~~~~v~~~~~tg~~v-----ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRA-----INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGRE 197 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHH-----HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCceEEeccceecCCCceE-----Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHH
Confidence 3578999999999644334 9999 9999999999999999999999999999999 999999999971
Q ss_pred ---------------CcEEEEecC-CCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC--cccccCCCCCChHH
Q 015952 146 ---------------GDGTYFLQE-YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH--GELVIRRSDSSSLR 207 (397)
Q Consensus 146 ---------------~~ig~v~Q~-~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGq 207 (397)
+.++|++|+ ..++. ++++.+|+.+... ....-+- .........+|+||
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~---~~~v~~~~~~~ae-----------~~~~~~~~v~~~ld~l~~lS~g~ 263 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADVSPLL---RMQGAAYATRIAE-----------DFRDRGQHVLLIMDSLTRYAMAQ 263 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTSCHHH---HHHHHHHHHHHHH-----------HHHTTTCEEEEEEECHHHHHHHH
T ss_pred HHHHHHhhccccccCceEEEEECCCCCHHH---HHHHHHHHHHHHH-----------HHHhCCCCHHHHHHhHHHHHHHH
Confidence 458999995 33333 4788888766321 1111111 11223355679999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc---cCCc-----eEEEEec
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF---RDDK-----PVVVVTH 279 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~---~~g~-----TVIivTH 279 (397)
|||+|| +.+|++- +++|+.... .+.+++.. ... +.|. ||+++||
T Consensus 264 -qrvslA---l~~p~~t----------------~glD~~~~~------~l~~ll~r--~~~~~~~~GsiT~~~tVlv~tH 315 (438)
T 2dpy_A 264 -REIALA---IGEPPAT----------------KGYPPSVFA------KLPALVER--AGNGIHGGGSITAFYTVLTEGD 315 (438)
T ss_dssp -HHHHHH---TTCCCCS----------------SSCCTTHHH------HHHHHHTT--CSCCSTTSCEEEEEEEEECSSS
T ss_pred -HHHHHH---hCCCccc----------------ccCCHHHHH------HHHHHHHH--HHhccCCCCcccceeEEEEeCC
Confidence 999999 8888774 777765543 33333211 111 2364 9999999
Q ss_pred hhHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 280 ~~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|.-..+||++ ++|.+|+++.++++.++...|
T Consensus 316 dl~~~iad~v-~~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 316 DQQDPIADSA-RAILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp CSCCHHHHHH-HHHSSEEEEECHHHHHTTCSS
T ss_pred CccchhhceE-EEEeCcEEEEeCCHHHccCCC
Confidence 7338899999 579999999999998887665
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-24 Score=201.93 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=97.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----------eCcEEEEecCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----------VGDGTYFLQEYTIPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----------~~~ig~v~Q~~~l~~~~ 161 (397)
|+||||+|++|++++|+||||||||||+|+|+|++ | |+|.+ |. +..++|+||++.++.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 81 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE-- 81 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH--
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH--
Confidence 99999999999999999999999999999999976 4 78887 43 246899999876654
Q ss_pred CCcc-HHHHHh---cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCeEeecccccc
Q 015952 162 NSFS-LYDTRS---LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK-----AHKIGCEPSVIRKVNFVIF 232 (397)
Q Consensus 162 ~~lt-v~eni~---~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaI-----ArAL~~~P~iLllDEP~~s 232 (397)
.++ ..+++. +...........+.++++...+... ..++||||+||++| ||+|+.+|+++
T Consensus 82 -~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~-------- 149 (218)
T 1z6g_A 82 -DKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLF---EMNINGVKQLKKSTHIKNALYIFIKPPSTD-------- 149 (218)
T ss_dssp -HHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEE---EECHHHHHHHTTCSSCCSCEEEEEECSCHH--------
T ss_pred -HhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHH--------
Confidence 222 111221 1111000112335566665443211 25679999999999 66666666666
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+||||| +++|..+.. ...+.+.+.........-.+.+.|+++|+ ++...++++
T Consensus 150 ~Lde~~--~~~d~~~~~--~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 150 VLLSRL--LTRNTENQE--QIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHH--HHTCCCCHH--HHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHH--HhcCCCCHH--HHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 888888 788876654 22222322210000000034556666773 555666665
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-23 Score=206.93 Aligned_cols=164 Identities=10% Similarity=0.081 Sum_probs=121.8
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCC-
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYT- 156 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~- 156 (397)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.. ..++|++|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 45899999999999999999999999999999999 999999998851 25899999987
Q ss_pred CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccc
Q 015952 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFV 233 (397)
Q Consensus 157 l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~si 233 (397)
+++ ..++++|+.++..... -..+++.+|+.+ ....+.+|| +||++|||||+.+|+ +| +
T Consensus 223 ~~p---~~tv~e~l~~~~~~~~-----d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL--------v 283 (359)
T 2og2_A 223 AKA---ATVLSKAVKRGKEEGY-----DVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL--------V 283 (359)
T ss_dssp CCH---HHHHHHHHHHHHHTTC-----SEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEE--------E
T ss_pred cCh---hhhHHHHHHHHHhCCC-----HHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEE--------E
Confidence 655 5799999976431100 012455666633 344466778 999999999999999 98 7
Q ss_pred cchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-h----------hHHccccEEEEEeeCCEEe
Q 015952 234 VDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-G----------DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 234 LDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~----------~~~~~aDrI~v~l~~G~iv 299 (397)
|| || +++|.... .+.+. ...|.|+|++|| | .+...+..| .++..|+.+
T Consensus 284 LD-pt--tglD~~~~-----~~~~~---------~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI-~~ig~Ge~~ 342 (359)
T 2og2_A 284 LD-GN--TGLNMLPQ-----AREFN---------EVVGITGLILTKLDGSARGGCVVSVVEELGIPV-KFIGVGEAV 342 (359)
T ss_dssp EE-GG--GGGGGHHH-----HHHHH---------HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCE-EEEECSSSG
T ss_pred Ec-CC--CCCCHHHH-----HHHHH---------HhcCCeEEEEecCcccccccHHHHHHHHhCCCE-EEEeCCCCh
Confidence 78 77 77774322 12221 135889999999 3 233556778 468888643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-22 Score=177.86 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=85.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE--EC--ceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT--YN--SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~--i~--G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
.++|+||||||||||+|+|+|++. . ...|... .. ..++.+||++|++.. .+++ +......
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i--~~~g~~~~~~~~~~~~~~ig~~~~~~~~---------~~~~-~~~~~~~-- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--K--RAIGFWTEEVRDPETKKRTGFRIITTEG---------KKKI-FSSKFFT-- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--G--GEEEEEEEEEC------CCEEEEEETTC---------CEEE-EEETTCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--C--cCCCEEhhhhccccccceeEEEeecCcH---------HHHH-HHhhcCC--
Confidence 589999999999999999999986 1 2233221 11 113578999998621 1222 1100000
Q ss_pred HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHH-----HcCCCCeEeeccccccccchhhhhccccccchhhhHHHH
Q 015952 181 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK-----IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 255 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA-----L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~ 255 (397)
.-....+++.++|||||||++|||| ++.+|+++++||+ + || +++|+. ..+
T Consensus 66 -----------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEi-----g-p~--~~ld~~------~~~ 120 (178)
T 1ye8_A 66 -----------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEI-----G-KM--ELFSKK------FRD 120 (178)
T ss_dssp -----------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCC-----S-TT--GGGCHH------HHH
T ss_pred -----------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCC-----C-Cc--ccCCHH------HHH
Confidence 0012345577899999999999996 9999999955550 0 55 566632 234
Q ss_pred HHHHhcCCCcccccCCceEEEEec---h--hHHccccE
Q 015952 256 IVATTFNCPYLSFRDDKPVVVVTH---G--DLLSLTDR 288 (397)
Q Consensus 256 ~i~~l~~~~~~~~~~g~TVIivTH---~--~~~~~aDr 288 (397)
.+.+++ .+.+.|+|++|| + .+..+|+|
T Consensus 121 ~l~~~l------~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 121 LVRQIM------HDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHH------TCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHH------hcCCCeEEEEEccCCCchHHHHHHhc
Confidence 444443 125677999996 3 77778887
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-23 Score=196.96 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=82.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC-
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA- 176 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~- 176 (397)
.++|+||||||||||+|+|+|+.. |++|+|.++|. ++.+||++|++.++. .+||.||+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~---~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM---KLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCCCCSCCEEEESCC----CC---EEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCcceeeeeeEEEeecCCCcC---CceEEechhhhhhcc
Confidence 489999999999999999999999 99999999986 367999999988876 68999999998652
Q ss_pred hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 177 SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
.....+.+.+++.. ......+.+||||||||+++|||++. ++ +||||+ .+||+. + .+.
T Consensus 76 ~~~~~~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---ll--------lldep~--~gL~~l-D-----~~~ 133 (270)
T 3sop_A 76 NENCWEPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LY--------FISPTG--HSLRPL-D-----LEF 133 (270)
T ss_dssp CTTCSHHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EE--------EECCCS--SSCCHH-H-----HHH
T ss_pred cHHHHHHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eE--------EEecCC--CcCCHH-H-----HHH
Confidence 11111222223221 11233356799999999999999886 88 666666 566632 1 233
Q ss_pred HHHhcCCCcccccCCceEEEEec
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+..+. +. ++||+|.|
T Consensus 134 l~~L~-------~~-~~vI~Vi~ 148 (270)
T 3sop_A 134 MKHLS-------KV-VNIIPVIA 148 (270)
T ss_dssp HHHHH-------TT-SEEEEEET
T ss_pred HHHHH-------hc-CcEEEEEe
Confidence 33331 23 67777777
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-22 Score=197.56 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=94.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++++||.+++|++++|+||||||||||+|+|+|+++ |++|.|.++|... ..+.. ..+.+.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~e--------~~~~~------~~~~i~~ 221 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTEE--------IVFKH------HKNYTQL 221 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSCC--------CCCSS------CSSEEEE
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCeec--------ccccc------chhEEEE
Confidence 889999999999999999999999999999999999 9999999988521 11110 0000111
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhH
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~ 252 (397)
. . + |||+||++|||||..+|++| +||||| + .+
T Consensus 222 ~--~-------------------------g--gg~~~r~~la~aL~~~p~il--------ildE~~--~------~e--- 253 (330)
T 2pt7_A 222 F--F-------------------------G--GNITSADCLKSCLRMRPDRI--------ILGELR--S------SE--- 253 (330)
T ss_dssp E--C-------------------------B--TTBCHHHHHHHHTTSCCSEE--------EECCCC--S------TH---
T ss_pred E--e-------------------------C--CChhHHHHHHHHhhhCCCEE--------EEcCCC--h------HH---
Confidence 0 0 0 89999999999999999999 555555 2 11
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCE
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~ 297 (397)
..+.+..+ ...+.|+|++||+ .+...|||+ ++|.+|.
T Consensus 254 ~~~~l~~~-------~~g~~tvi~t~H~~~~~~~~dri-~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVL-------CSGHKGTLTTLHAGSSEEAFIRL-ANMSSSN 291 (330)
T ss_dssp HHHHHHHH-------HTTCCCEEEEEECSSHHHHHHHH-HHHHHTS
T ss_pred HHHHHHHH-------hcCCCEEEEEEcccHHHHHhhhh-eehhcCC
Confidence 22333322 1234589999994 788899999 5687764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-21 Score=194.69 Aligned_cols=191 Identities=8% Similarity=-0.043 Sum_probs=127.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++++++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+.. |+.|.|.+.|++
T Consensus 43 ~~~i~~~~l~~~~~tg~~a-----ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRA-----IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGRE 111 (347)
T ss_dssp SCSTTCCCCCSEECCSCHH-----HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCCeeecccceecCCCCEE-----EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHHH
Confidence 3578999999999644323 9999 9999999999999999999999999999999 999999998863
Q ss_pred --------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc--ccccCCCCCChHHHH
Q 015952 146 --------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG--ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 --------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~--~~~~~~~~lSGGqkQ 209 (397)
+.+.+++|... ...+.+.... .. ....+.+...+-. ...+.+..+|+|| |
T Consensus 112 v~~~i~~~~~~~~~~~v~~~~~~~~--------~~~~r~~~~~----~~-~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r 177 (347)
T 2obl_A 112 VNEFLALLPQSTLSKCVLVVTTSDR--------PALERMKAAF----TA-TTIAEYFRDQGKNVLLMMDSVTRYARAA-R 177 (347)
T ss_dssp HHHHHTTSCHHHHTTEEEEEECTTS--------CHHHHHHHHH----HH-HHHHHHHHTTTCEEEEEEETHHHHHHHH-H
T ss_pred HHHHHHhhhhhhhhceEEEEECCCC--------CHHHHHHHHH----HH-HHHHHHHHhccccHHHHHhhHHHHHHHH-H
Confidence 12344444211 1111110000 00 0011111111111 1124566779999 9
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc-cCCc-----eEEEEechhHH
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF-RDDK-----PVVVVTHGDLL 283 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~-~~g~-----TVIivTH~~~~ 283 (397)
|+++| +.+|++- +++|+.. ...+.+++.. ... +.|. ||+++|||.-.
T Consensus 178 ~v~la---l~~p~~t----------------~Gldp~~------~~~l~~ller--~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 178 DVGLA---SGEPDVR----------------GGFPPSV------FSSLPKLLER--AGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp HHHHH---TTCCCCB----------------TTBCHHH------HHHHHHHHTT--CEECSSSEEEEEEEEECCSSCCCC
T ss_pred HHHHH---cCCCCcc----------------cCCCHHH------HHHHHHHHHH--HhCCCCCCeeeEEEEEEeCCCCCC
Confidence 99999 5777763 6666433 2344444321 112 3577 99999997337
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+||++ +++.+|+|+.++++.++...|.
T Consensus 231 ~i~d~v-~~i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 231 PIGDEV-RSILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp HHHHHH-HHHCSEEEEBCHHHHTTTCSSC
T ss_pred hhhhhe-EEeeCcEEEEeCCHHHcCCCCC
Confidence 889999 5699999999999988876664
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-21 Score=186.91 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=105.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEEECcee-------CcEEEEecCCCCCCCCCCc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV-------GDGTYFLQEYTIPRGSNSF 164 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~i~G~~-------~~ig~v~Q~~~l~~~~~~l 164 (397)
|+++++.|++|++++|+||||||||||++.|+|+.. |++| .|.+.+.. .++.+++|... +
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~-------~ 92 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLEESVEETAEDLIGLHNRVR-------L 92 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC-------G
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC-------h
Confidence 999999999999999999999999999999999999 8878 67543321 12222222211 2
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHH-HHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR-NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGq-kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
++.+++..+....++..+.+.++++..++. ....+..+|.+| +||+. |++++.+|++|++||| +++++.. ..+
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDep-t~~~~~~---~~~ 166 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHI-SIVVSAS---GES 166 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEE-C------------
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCc-cccCCCC---CCC
Confidence 222233221111223334445555433432 223356789998 66666 9999999999955555 2222110 001
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech------------------------hHHccccEEEEEeeCCEE
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG------------------------DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~------------------------~~~~~aDrI~v~l~~G~i 298 (397)
|.. .......+.+.++ ..+.|+|||++||+ .+..+||+| ++|++|+.
T Consensus 167 d~~-~~~~~i~~~L~~l------a~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~v-i~L~~~~~ 237 (296)
T 1cr0_A 167 DER-KMIDNLMTKLKGF------AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTI-IALERNQQ 237 (296)
T ss_dssp --C-HHHHHHHHHHHHH------HHHHCCEEEEEEECC-----------------CCC---CHHHHCSEE-EEEEEC--
T ss_pred CHH-HHHHHHHHHHHHH------HHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEE-EEEecCcc
Confidence 210 1111233333332 12358999999995 466799999 57998875
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=180.62 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 202 DSSSLRNRMRCKAHKIG---------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~---------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
.+|||||||++||++|+ .+|++| +||||| +.||+.... ...+.+.++ +.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iL--------LLDEp~--s~LD~~~~~--~l~~~l~~~----------~q 322 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVL--------LLDDFT--AELDPHRRQ--YLLDLAASV----------PQ 322 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEE--------EECCGG--GCCCHHHHH--HHHHHHHHS----------SE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHhc----------Cc
Confidence 47999999999999999 899999 555555 777754333 233333221 26
Q ss_pred eEEEEechhHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 273 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 273 TVIivTH~~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
|+|++||... .||++ ++|++|+++..|+++++
T Consensus 323 t~i~~th~~~--~~~~i-~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 323 AIVTGTELAP--GAALT-LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEESSCCT--TCSEE-EEEETTEEEECCCTTTS
T ss_pred EEEEEEeccc--cCCEE-EEEECCEEEecCCHHHH
Confidence 9999999422 89999 57999999999999887
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-20 Score=205.68 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=110.7
Q ss_pred CCeEEEEe-----EEEEECCCceEeeccCceeeeEEEcC-------CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc
Q 015952 69 GSLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (397)
Q Consensus 69 ~~~lel~n-----vs~~Y~~~~~v~~~~~L~~isl~I~~-------Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~ 136 (397)
.++|+++| |++.|.++..+ ++|++|++++ |++++|+||||||||||||+| |++. +.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~- 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM- 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH-
T ss_pred CceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH-
Confidence 45799999 99999434435 9999999987 999999999999999999999 9988 52
Q ss_pred cEEEECceeCcEE-EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 137 AQVTYNSSVGDGT-YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 137 G~I~i~G~~~~ig-~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
.++| ||||++. .+++.|++.. ++|+. ........+|+++++ +++|
T Consensus 816 ---------aqiG~~Vpq~~~------~l~v~d~I~~-----------------rig~~d~~~~~~stf~~em~~-~a~a 862 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC------RLTPIDRVFT-----------------RLGASDRIMSGESTFFVELSE-TASI 862 (1022)
T ss_dssp ---------HTTTCCEESSEE------EECCCSBEEE-----------------ECC---------CHHHHHHHH-HHHH
T ss_pred ---------hheeEEeccCcC------CCCHHHHHHH-----------------HcCCHHHHhhchhhhHHHHHH-HHHH
Confidence 2456 9999863 3567776532 12321 111223445777665 9999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
++++.+|+++ +||||+ +++|+.... ......+..+. .+.|.++|++||+ .+..+||++. +
T Consensus 863 l~la~~~sLl--------LLDEp~--~Gtd~~dg~-~~~~~il~~L~------~~~g~~vl~~TH~~el~~~~~d~~~-v 924 (1022)
T 2o8b_B 863 LMHATAHSLV--------LVDELG--RGTATFDGT-AIANAVVKELA------ETIKCRTLFSTHYHSLVEDYSQNVA-V 924 (1022)
T ss_dssp HHHCCTTCEE--------EEECTT--TTSCHHHHH-HHHHHHHHHHH------HTSCCEEEEECCCHHHHHHTSSCSS-E
T ss_pred HHhCCCCcEE--------EEECCC--CCCChHHHH-HHHHHHHHHHH------hcCCCEEEEEeCCHHHHHHhCCcce-e
Confidence 9999999999 555556 777744322 11223333321 1248999999994 7778899994 3
Q ss_pred eeCCEEe--eeCCc
Q 015952 293 TYLGELL--GIPPA 304 (397)
Q Consensus 293 l~~G~iv--~~g~~ 304 (397)
+ +|++. ..|++
T Consensus 925 ~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 925 R-LGHMACMVENEC 937 (1022)
T ss_dssp E-EEEEEEC-----
T ss_pred e-cCeEEEEEecCc
Confidence 4 68887 44444
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=189.77 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=107.5
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh-cCCC
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LSDD 175 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~-~~~~ 175 (397)
+..|++|++++|+||||||||||+++++|+.. |. |+ +.+.|++|++. ..+..+.. ++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~-------~vi~~~~ee~~-------~~l~~~~~~~g~~ 334 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KE-------RAILFAYEESR-------AQLLRNAYSWGMD 334 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TC-------CEEEEESSSCH-------HHHHHHHHTTSCC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CC-------CEEEEEEeCCH-------HHHHHHHHHcCCC
Confidence 45899999999999999999999999999998 74 43 12456778742 23444432 2211
Q ss_pred ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHH
Q 015952 176 ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~ 254 (397)
..+ +...|+ .....+|.++||||+||+++|+++..+|++| ++| || ++||..... .+..
T Consensus 335 --------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll--------ilD-p~--~~Ld~~~~~-~~~~ 393 (525)
T 1tf7_A 335 --------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI--------AID-SL--SALARGVSN-NAFR 393 (525)
T ss_dssp --------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE--------EEE-CH--HHHTSSSCH-HHHH
T ss_pred --------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE--------EEc-Ch--HHHHhhCCh-HHHH
Confidence 111 224555 3345567889999999999999999999999 666 66 777765221 1123
Q ss_pred HHHHHhcCCCcccccCCceEEEEechh------------HHccccEEEEEeeCCE
Q 015952 255 QIVATTFNCPYLSFRDDKPVVVVTHGD------------LLSLTDRARIRTYLGE 297 (397)
Q Consensus 255 ~~i~~l~~~~~~~~~~g~TVIivTH~~------------~~~~aDrI~v~l~~G~ 297 (397)
+.+.+++.. + ++.|+|||++||+. +..+||+| ++|++|+
T Consensus 394 ~~i~~ll~~--l-~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~v-i~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGY--A-KQEEITGLFTNTSDQFMGAHSITDSHISTITDTI-ILLQYVE 444 (525)
T ss_dssp HHHHHHHHH--H-HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEE-EEEEEEE
T ss_pred HHHHHHHHH--H-HhCCCEEEEEECcccccCcccccCcccceeeeEE-EEEEEEE
Confidence 333333210 1 24699999999963 46789999 5799887
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-20 Score=175.93 Aligned_cols=122 Identities=7% Similarity=0.015 Sum_probs=80.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+|+||++++|+++||+||||||||||+++|+|++. . +.++..++.++|++|+. ++. .+++.+++.+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-----~----~~~~~~~~~i~~v~~d~-~~~---~l~~~~~~~~ 81 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-----Q----NEVEQRQRKVVILSQDR-FYK---VLTAEQKAKA 81 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT-----G----GGSCGGGCSEEEEEGGG-GBC---CCCHHHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----h----hcccccCCceEEEeCCc-Ccc---ccCHhHhhhh
Confidence 999999999999999999999999999999999764 1 22223356799999995 444 4789888765
Q ss_pred CCC------ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 173 SDD------ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 173 ~~~------~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
... ......+.+.+.++.+. .....++..+|+||+||+++ ++++.+|+++++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred hccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 322 11111233344444431 22344577889999999988 688999999966655
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-20 Score=169.39 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=101.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC-Chh
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASD 178 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-~~~ 178 (397)
.++|++++|+||||||||||+++|+|++. | .++|++|++.++.. ..+++.++..+... ...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~------------~i~~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~ 64 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-----E------------RVALLPMDHYYKDL-GHLPLEERLRVNYDHPDA 64 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-----G------------GEEEEEGGGCBCCC-TTSCHHHHHHSCTTSGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-----C------------CeEEEecCccccCc-ccccHHHhcCCCCCChhh
Confidence 57899999999999999999999999998 6 58999999876531 24688888766433 222
Q ss_pred hHHHHHHHHHHHCCCc-ccccCCCCCChHH----HHHHHHHHHHcCCCCeEeeccccccccchhhhhcc-------cccc
Q 015952 179 NINMIKLWIMEGVRHG-ELVIRRSDSSSLR----NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-------MEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~-~~~~~~~~lSGGq----kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~-------LD~~ 246 (397)
...+.+.++++.+++. .....+.++|+|| +||+++|++++.+|.++ ++|||| +. ||..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll--------~~de~~--~~~~d~~i~ld~~ 134 (211)
T 3asz_A 65 FDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILV--------LYPKEL--RDLMDLKVFVDAD 134 (211)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTT--------TSSHHH--HTTCSEEEEEECC
T ss_pred hhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhh--------ccCHHH--HHhcCEEEEEeCC
Confidence 2234566677888774 3444567789996 47888889999999888 556665 34 6755
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+. ...+.+.+.. .++|+|+++++|+
T Consensus 135 ~~~--~~~r~l~r~~------~~~g~t~~~~~~~ 160 (211)
T 3asz_A 135 ADE--RFIRRLKRDV------LERGRSLEGVVAQ 160 (211)
T ss_dssp HHH--HHHHHHHHHH------HHSCCCHHHHHHH
T ss_pred HHH--HHHHHHHHHH------HHhCCCHHHHHHH
Confidence 443 2333333321 2368899999994
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=163.84 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred cCCCCCChHHHH------HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 198 IRRSDSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 198 ~~~~~lSGGqkQ------RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
.++.+||||||| |+++||||+.+|++| +||||| ++||+.... ...+.+.++ ...|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~l--------llDEp~--~~LD~~~~~--~l~~~l~~~-------~~~~ 304 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLL--------ILDEPT--PYLDEERRR--KLITIMERY-------LKKI 304 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEE--------EEECCC--TTCCHHHHH--HHHHHHHHT-------GGGS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhcC
Confidence 456789999999 678889999999999 555555 677754333 334444443 2457
Q ss_pred ceEEEEech-hHHccccEEEEEee
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
.|||+|||+ ++...||++ ++|+
T Consensus 305 ~~vi~~sH~~~~~~~~d~~-~~l~ 327 (339)
T 3qkt_A 305 PQVILVSHDEELKDAADHV-IRIS 327 (339)
T ss_dssp SEEEEEESCGGGGGGCSEE-EEEE
T ss_pred CEEEEEEChHHHHHhCCEE-EEEE
Confidence 899999995 788999999 4564
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-19 Score=175.74 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=96.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCCCCCCCCCcc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~l~~~~~~lt 165 (397)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.. ..++|++|++.+++ ..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p---~~~ 172 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS---AAL 172 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH---HHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH---HHH
Confidence 699999999999999999999999999 999999998862 35899999987765 578
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 166 LYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 166 v~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
+++|+.++.. ......+++..|+.+ ......+..++||++||||++.+|+.+++ +||..|.
T Consensus 173 v~~~v~~~~~-----~~~d~~llDt~G~~~--~~~~~~~eLs~~r~~iaRal~~~P~~~lL------vLDa~t~------ 233 (304)
T 1rj9_A 173 AYDAVQAMKA-----RGYDLLFVDTAGRLH--TKHNLMEELKKVKRAIAKADPEEPKEVWL------VLDAVTG------ 233 (304)
T ss_dssp HHHHHHHHHH-----HTCSEEEECCCCCCT--TCHHHHHHHHHHHHHHHHHCTTCCSEEEE------EEETTBC------
T ss_pred HHHHHHHHHh-----CCCCEEEecCCCCCC--chHHHHHHHHHHHHHHHHhhcCCCCeEEE------EEcHHHH------
Confidence 9999865321 000000122223211 11111266779999999999999996644 7885552
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
. ..++.+.++. ...|.|+|++||
T Consensus 234 ---~--~~~~~~~~~~------~~~~~t~iivTh 256 (304)
T 1rj9_A 234 ---Q--NGLEQAKKFH------EAVGLTGVIVTK 256 (304)
T ss_dssp ---T--HHHHHHHHHH------HHHCCSEEEEEC
T ss_pred ---H--HHHHHHHHHH------HHcCCcEEEEEC
Confidence 1 1223333221 124789999999
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-21 Score=199.06 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=60.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeE-EEcCCcEEEEECCCCCcHHHHHHH--HHcccCCCCCCCcccEEEECce---
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~--I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
+++.+++.+ |..+..+ |++||| .|++|++++|+||||||||||+++ ++|+.+ |++|.|+++|.
T Consensus 12 ~~~~~~~~~-~~~g~~~-----Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~~ 80 (525)
T 1tf7_A 12 NSEHQAIAK-MRTMIEG-----FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEETP 80 (525)
T ss_dssp --CCSSCCE-ECCCCTT-----HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCH
T ss_pred Ccccccccc-ccCCchh-----HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCCH
Confidence 455566654 4334323 999999 999999999999999999999999 789999 99999999996
Q ss_pred ------eCcEEEEecCCC
Q 015952 145 ------VGDGTYFLQEYT 156 (397)
Q Consensus 145 ------~~~ig~v~Q~~~ 156 (397)
.+.+||+||++.
T Consensus 81 ~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 81 QDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp HHHHHHHGGGTCCHHHHH
T ss_pred HHHHHHHHHcCCChHHhh
Confidence 246788888754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=175.66 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=56.5
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCC--CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEE
Q 015952 200 RSDS-SSLRNRMRCKAHKIGCEP--SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 276 (397)
Q Consensus 200 ~~~l-SGGqkQRvaIArAL~~~P--~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIi 276 (397)
+..+ ||||+|||+|||||+.+| ++| +||||| ++||..... ...+.+.++ .+|+|||+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~l--------ilDEp~--~gld~~~~~--~i~~~l~~~--------~~~~~vi~ 453 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSV--------VFDEVD--AGIGGAAAI--AVAEQLSRL--------ADTRQVLV 453 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEE--------EECSCS--SSCCTHHHH--HHHHHHHHH--------HHHSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEE--------EEeCCc--CCCCHHHHH--HHHHHHHHH--------hCCCEEEE
Confidence 4556 999999999999999999 999 555555 777754433 344444443 23789999
Q ss_pred Eech-hHHccccEEEEEeeCCE
Q 015952 277 VTHG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 277 vTH~-~~~~~aDrI~v~l~~G~ 297 (397)
|||+ .+..+|||+ ++|+++.
T Consensus 454 itH~~~~~~~~d~~-~~~~~~~ 474 (517)
T 4ad8_A 454 VTHLAQIAARAHHH-YKVEKQV 474 (517)
T ss_dssp ECCCHHHHHHSSEE-EEEECCE
T ss_pred EecCHHHHHhCCEE-EEEeccc
Confidence 9996 555679999 5686653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-19 Score=167.47 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=90.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|. .++|++|+..- + +
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~--~i~~~~~~~~~------~-v----- 75 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIED--PIEYVFKHKKS------I-V----- 75 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEES--SCCSCCCCSSS------E-E-----
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCC--cceeecCCcce------e-e-----
Confidence 99999 89999999999999999999999999999 98 999999885 34555553210 0 0
Q ss_pred cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhh
Q 015952 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~ 251 (397)
.. ..++++. .. -|++||+||+.+|++|++||| - |+.+.
T Consensus 76 ----~q-----------~~~gl~~-----~~------l~~~la~aL~~~p~illlDEp---~-D~~~~------------ 113 (261)
T 2eyu_A 76 ----NQ-----------REVGEDT-----KS------FADALRAALREDPDVIFVGEM---R-DLETV------------ 113 (261)
T ss_dssp ----EE-----------EEBTTTB-----SC------HHHHHHHHHHHCCSEEEESCC---C-SHHHH------------
T ss_pred ----eH-----------HHhCCCH-----HH------HHHHHHHHHhhCCCEEEeCCC---C-CHHHH------------
Confidence 00 0233321 11 289999999999999977777 2 33331
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
...+. . ...|.+|+++||+ .+...|||+ +.|.
T Consensus 114 --~~~l~-~-------~~~g~~vl~t~H~~~~~~~~dri-~~l~ 146 (261)
T 2eyu_A 114 --ETALR-A-------AETGHLVFGTLHTNTAIDTIHRI-VDIF 146 (261)
T ss_dssp --HHHHH-H-------HHTTCEEEEEECCSSHHHHHHHH-HHTS
T ss_pred --HHHHH-H-------HccCCEEEEEeCcchHHHHHHHH-hhhc
Confidence 11111 1 1468999999994 677788887 3343
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-18 Score=160.53 Aligned_cols=154 Identities=10% Similarity=-0.002 Sum_probs=85.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC-----cccEEEECcee----CcEEEEecCCCCCCCCCCccHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYDT 169 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p-----~~G~I~i~G~~----~~ig~v~Q~~~l~~~~~~ltv~en 169 (397)
.|++|++++|+||||||||||+++|+|+..+. + ..|.+.+++.. .++++++|...++. .++.+|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~---~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~ 93 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP----DEVLKH 93 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCH----HHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCH----HHHhhc
Confidence 68999999999999999999999999976611 2 33466666642 24555566554443 255555
Q ss_pred HhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCCh-HHHHHHHHHHHH-------cCCCCeEeeccccccccchhhhhc
Q 015952 170 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-LRNRMRCKAHKI-------GCEPSVIRKVNFVIFVVDGLAVLK 241 (397)
Q Consensus 170 i~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSG-GqkQRvaIArAL-------~~~P~iLllDEP~~siLDEpT~~s 241 (397)
+.+... .++ .+++++..++++ ..+|+++++||| ++.+|... +
T Consensus 94 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~-~~~l~~~~--~ 143 (231)
T 4a74_A 94 IYVARA---------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL-TSHFRSEY--I 143 (231)
T ss_dssp EEEEEC---------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETS-SHHHHHHS--C
T ss_pred EEEEec---------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECCh-HHHhcccc--C
Confidence 544322 112 222223333333 358999966666 44444332 1
Q ss_pred cccccchhh---hHHHHHHHHhcCCCcccccCCceEEEEec----h--hHHccccEEEEEeeCC
Q 015952 242 SMEGDSDVE---KQYNQIVATTFNCPYLSFRDDKPVVVVTH----G--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 242 ~LD~~~~~~---~~~~~~i~~l~~~~~~~~~~g~TVIivTH----~--~~~~~aDrI~v~l~~G 296 (397)
.-+...+.. ...++.+.++ ..+.|+|||++|| + .+...||++ ++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~------~~~~g~tvi~vtH~~~~~g~~~~~~~d~~-l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRL------ANLYDIAVFVTNQVQANGGHILAHSATLR-VYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHH------HHHHTCEEEEEEECC---------CCSEE-EEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHH------HHHCCCeEEEEeecccCcchhhHhhceEE-EEEEec
Confidence 100000100 0122233222 1235999999999 3 478899999 568875
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-18 Score=191.53 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=99.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHH--------HcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI--------SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 164 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I--------~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~l 164 (397)
++|+||++++|++++|+||||||||||||+| .|.+- |.++.. ++.+.
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v-----pa~~~~--------~~~~d------------ 706 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-----PCESAE--------VSIVD------------ 706 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB-----SEEEEE--------EECCS------------
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc-----cccccc--------chHHH------------
Confidence 8999999999999999999999999999999 55555 543221 11110
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCeEeeccccccccchhhhhcc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL--~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
+++.++|+.+ .....+|+|+++++.+|+++ +.+|+++ +||||| ++
T Consensus 707 ---------------------~i~~~ig~~d--~l~~~lStf~~e~~~~a~il~~a~~~sLl--------LLDEp~--~G 753 (934)
T 3thx_A 707 ---------------------CILARVGAGD--SQLKGVSTFMAEMLETASILRSATKDSLI--------IIDELG--RG 753 (934)
T ss_dssp ---------------------EEEEECC-----------CHHHHHHHHHHHHHHHCCTTCEE--------EEESCS--CS
T ss_pred ---------------------HHHHhcCchh--hHHHhHhhhHHHHHHHHHHHHhccCCcEE--------EEeCCC--CC
Confidence 0111122211 11345688888888888888 9999999 555556 77
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+|+.... .....+.+.+ ..+.|+|+|++||+ ++..+||++ ..+.+|++...++++++
T Consensus 754 lD~~~~~--~i~~~il~~l-----~~~~g~~vl~aTH~~el~~lad~~-~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 754 TSTYDGF--GLAWAISEYI-----ATKIGAFCMFATHFHELTALANQI-PTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCHHHHH--HHHHHHHHHH-----HHTTCCEEEEEESCGGGGGGGGTC-TTEEEEEEEEEEETTEE
T ss_pred CCHHHHH--HHHHHHHHHH-----HhcCCCEEEEEcCcHHHHHHhccc-ceeEeeEEEEEecCCcE
Confidence 7754333 1212222221 12358999999995 788899999 46999999988777665
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-18 Score=188.78 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=112.2
Q ss_pred HHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC----C---------hhhHHHHH
Q 015952 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----A---------SDNINMIK 184 (397)
Q Consensus 118 TLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~---------~~~~~~~~ 184 (397)
|...|..+.+. |..|+|.++|+.-. + +. .+++.+++.+... . ..+. ...
T Consensus 383 ~C~~C~g~rl~-----~~~~~V~i~G~~i~-----~----~~---~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLN-----REALSVKINGLNIH-----E----FT---ELSISEELEFLKNLNLTEREREIVGELLKEI-EKR 444 (916)
T ss_dssp ECTTTCSCCBC-----TTGGGEEETTEEHH-----H----HH---HSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-HHH
T ss_pred cchhcccccCC-----hHhcCcEECCccHH-----H----hh---hCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-HHH
Confidence 44566677788 99999999997311 0 11 2466666554211 0 0111 234
Q ss_pred HHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 185 LWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 185 ~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
.+.+..+|+++ ..+.+.+|||||||||+|||||+.+|+ +| +||||| ++||+.... ...+.+.++
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ll--------lLDEPT--~gLD~~~~~--~l~~~L~~L 512 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIY--------VLDEPT--IGLHPRDTE--RLIKTLKKL 512 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEE--------EEECTT--TTCCGGGHH--HHHHHHHHT
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEE--------EEECCc--cCCCHHHHH--HHHHHHHHH
Confidence 56788899964 356788999999999999999999887 99 666667 788865443 344555443
Q ss_pred cCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 261 FNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.|.|||+|||| ++...|||| ++| ++|++++.|++++++..+.
T Consensus 513 -------~~~G~TvivVtHd~~~~~~aD~i-i~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 513 -------RDLGNTVIVVEHDEEVIRNADHI-IDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp -------TTTTCEEEEECCCHHHHHTCSEE-EEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred -------HhcCCEEEEEeCCHHHHHhCCEE-EEEcCCcccCCCEEEEeechhhhhcCch
Confidence 2469999999996 556679999 569 8999999999999987654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-19 Score=174.34 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc-cCCCCCCCcccEEEECce-------eC
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSS-------VG 146 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl-~~~~~~~p~~G~I~i~G~-------~~ 146 (397)
.||++.|+. ..+ +++++|+| +|+||||||||||+|+|.|. .. |++| |.++|. ..
T Consensus 2 ~~l~~~~~~-~~~-----l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t~~~~ 63 (301)
T 2qnr_A 2 SNLPNQVHR-KSV-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERTVQIE 63 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECC-EEE-----EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCcceEe
Confidence 578999963 324 99999998 99999999999999999998 77 8888 766554 24
Q ss_pred cEEEEecCCCCCCCCCCccHHHHHhcCCCCh--hhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 147 ~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~--~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+++++|+..++. .++++|+..++.... +..+.....+.+ ....++.++|||||||+++|||++ ++
T Consensus 64 ~~~~~~q~~~~~~---~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 64 ASTVEIEERGVKL---RLTVVDTPGYGDAINCRDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp -CEEEEC---CCE---EEEEEEEC-----------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred eEEEEecCCCccc---CcchhhhhhhhhhcCcHHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----ee
Confidence 5789999876654 689999988854311 000111111111 123456678999999999999986 88
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
++||||. .+||+.. .+.+.++ ....+.++|+.+||
T Consensus 132 --------~ldePt~-~~Ld~~~------~~~l~~l------~~~~~iilV~~K~D 166 (301)
T 2qnr_A 132 --------YFISPFG-HGLKPLD------VAFMKAI------HNKVNIVPVIAKAD 166 (301)
T ss_dssp --------EEECSSS-SSCCHHH------HHHHHHH------TTTSCEEEEECCGG
T ss_pred --------eeecCcc-cCCCHHH------HHHHHHH------HhcCCEEEEEEeCC
Confidence 6666662 3477432 2333332 12347788888996
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-18 Score=182.80 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=96.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++|+||+ |++++|+||||||||||+|+|+|+... ++.|.+. ...+..+|+++| ++. .+++.||+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~----~~~G~~v-pa~~~~i~~v~~---i~~---~~~~~d~l~~ 634 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL----AQVGSFV-PAEEAHLPLFDG---IYT---RIGASDDLAG 634 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH----HTTTCCB-SSSEEEECCCSE---EEE---ECCC------
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh----cccCcee-ehhccceeeHHH---hhc---cCCHHHHHHh
Confidence 8999999 999999999999999999999998630 4666643 222345777766 232 3566665532
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCeEeeccccccccchh---hhhccccccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGL---AVLKSMEGDS 247 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL--~~~P~iLllDEP~~siLDEp---T~~s~LD~~~ 247 (397)
.+|+||+|++.+|+++ +.+|+++ +|||| | +.+|...
T Consensus 635 -----------------------------g~S~~~~e~~~la~il~~a~~p~Ll--------LLDEpgrGT--s~lD~~~ 675 (765)
T 1ewq_A 635 -----------------------------GKSTFMVEMEEVALILKEATENSLV--------LLDEVGRGT--SSLDGVA 675 (765)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHCCTTEEE--------EEESTTTTS--CHHHHHH
T ss_pred -----------------------------cccHHHHHHHHHHHHHHhccCCCEE--------EEECCCCCC--CCcCHHH
Confidence 3589999999999999 9999999 77777 6 6666322
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
. ...+.+.+ . +.|.|+|++||+ +...+| .- .+.++++..+..
T Consensus 676 ~-----~~~i~~~L----~--~~g~~vl~~TH~~~l~~~~-~~--~v~n~~~~~~~~ 718 (765)
T 1ewq_A 676 I-----ATAVAEAL----H--ERRAYTLFATHYFELTALG-LP--RLKNLHVAAREE 718 (765)
T ss_dssp H-----HHHHHHHH----H--HHTCEEEEECCCHHHHTCC-CT--TEEEEEEEEECC
T ss_pred H-----HHHHHHHH----H--hCCCEEEEEeCCHHHHHhh-hh--cceEEEEEEEEc
Confidence 1 12232322 1 258899999995 556666 21 245555555443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-19 Score=162.29 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=95.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--------eCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
|++++|+||||||||||+++|+|+++ ++| |.++|. ++.+||++|+. .. ......++.++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g---~~~~l~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG---TRGPLSRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECCEEETTSSEEEEEEEET--TS---CEEEEEECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecchhHhhhceEEEEEEec--cc---ceehhhcccccC
Confidence 78999999999999999999999986 568 888775 36789999985 11 112111111111
Q ss_pred CChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHH-HHHH---HHcCCCCeEeeccccccccchhhhhccccccchh
Q 015952 175 DASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMR-CKAH---KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRv-aIAr---AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~ 249 (397)
.. ... .....+...+|+|||+++ ++++ |++.+|+++|+||| -|+ ..+|.
T Consensus 69 ~~--------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~------g~~--~~~~~---- 122 (189)
T 2i3b_A 69 PP--------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEI------GKM--ELFSQ---- 122 (189)
T ss_dssp CS--------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCC------STT--TTTCS----
T ss_pred Cc--------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCC------Ccc--ccccH----
Confidence 00 000 012233445799999998 5555 68999999955553 023 22221
Q ss_pred hhHHHHHHHHhcCCCcccccCCceEEE--Ee--chhHHccccEEEEEeeCCEEeeeC
Q 015952 250 EKQYNQIVATTFNCPYLSFRDDKPVVV--VT--HGDLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 250 ~~~~~~~i~~l~~~~~~~~~~g~TVIi--vT--H~~~~~~aDrI~v~l~~G~iv~~g 302 (397)
..++.+.+++ +...++|+ +| |+....++||| ..+.+|+|+...
T Consensus 123 --~~~~~l~~~l-------~~~~~~ilgti~vsh~~~~~~vd~i-~~~~~~~i~~~~ 169 (189)
T 2i3b_A 123 --LFIQAVRQTL-------STPGTIILGTIPVPKGKPLALVEEI-RNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHHH-------HCSSCCEEEECCCCCSSCCTTHHHH-HTTCCSEEEECC
T ss_pred --HHHHHHHHHH-------hCCCcEEEEEeecCCCCchHHHHHH-eecCCcEEEEeC
Confidence 2456666654 23445554 34 96336788999 458899998753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=173.63 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=96.8
Q ss_pred CccHHHHHhcCCC---Ch----------hhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC--CeEe
Q 015952 163 SFSLYDTRSLSDD---AS----------DNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP--SVIR 225 (397)
Q Consensus 163 ~ltv~eni~~~~~---~~----------~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P--~iLl 225 (397)
.+||.|++.|... +. +++.+++ +.|..+||++ ..+.+.+|||||+|||+||++|+.+| ++|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll- 528 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY- 528 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE-
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE-
Confidence 4688888888432 11 2344455 4689999964 46678899999999999999999985 899
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEE
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGEL 298 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~i 298 (397)
|||||| ++||+.... ...+.+.++ .+.|.|||+|+|+ +....|||| ++| ++|++
T Consensus 529 -------ILDEPT--agLdp~~~~--~L~~~L~~L-------r~~G~TVIvVeHdl~~i~~ADrI-i~LgpgaG~~gG~i 589 (972)
T 2r6f_A 529 -------VLDEPS--IGLHQRDND--RLIATLKSM-------RDLGNTLIVVEHDEDTMLAADYL-IDIGPGAGIHGGEV 589 (972)
T ss_dssp -------EEECTT--TTCCGGGHH--HHHHHHHHH-------HTTTCEEEEECCCHHHHHSCSEE-EEECSSSGGGCCSE
T ss_pred -------EEeCcc--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCHHHHHhCCEE-EEeCCCccCCCCEE
Confidence 666667 788865433 344555444 2579999999996 556789999 568 79999
Q ss_pred eeeCCcccccCCCC
Q 015952 299 LGIPPAKQIFDIPE 312 (397)
Q Consensus 299 v~~g~~~el~~~~~ 312 (397)
++.|++++++..+.
T Consensus 590 v~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 590 VAAGTPEEVMNDPN 603 (972)
T ss_dssp EEEECTTTTTTCTT
T ss_pred EEecCHHHHHhhhH
Confidence 99999999887543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-18 Score=186.02 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=85.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
++|+||++++|++++|+||||||||||||+|+++.. .. .| .++|+.... +.+.+.
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----~aq~g-----------~~vpa~~~~------i~~~d~-- 718 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----MAQIG-----------SYVPAEEAT------IGIVDG-- 718 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----HHHHT-----------CCBSSSEEE------EECCSE--
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----HhhcC-----------ccccchhhh------hhHHHH--
Confidence 899999999999999999999999999999987543 11 11 112211100 000000
Q ss_pred cCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 172 LSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
++.++++ +........+|+||+|++.|+++ +.+|+++ +||||| +++|+....
T Consensus 719 ---------------i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~Ll--------LLDEP~--~GlD~~~~~- 771 (918)
T 3thx_B 719 ---------------IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLV--------ILDELG--RGTSTHDGI- 771 (918)
T ss_dssp ---------------EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEE--------EEESTT--TTSCHHHHH-
T ss_pred ---------------HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEE--------EEeCCC--CCCCHHHHH-
Confidence 1112222 11223356679999999999999 8999999 555556 777754433
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccE
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDR 288 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDr 288 (397)
.....+.+. +..+.|.|+|++||+ ++..+||+
T Consensus 772 -~i~~~il~~-----L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 772 -AIAYATLEY-----FIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp -HHHHHHHHH-----HHHTTCCEEEEECSCGGGGGHHHH
T ss_pred -HHHHHHHHH-----HHHhcCCeEEEEeCcHHHHHHHhh
Confidence 222122221 112368999999995 66666665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-17 Score=166.29 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=102.3
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHHHHHccc--CCCCCCCcc----cE-EEECcee----CcEEEEecCCCCCCC
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSV----GDGTYFLQEYTIPRG 160 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~--~~~~~~p~~----G~-I~i~G~~----~~ig~v~Q~~~l~~~ 160 (397)
|+.+ ++.|++|++++|+||||||||||++.++++. + |++ |. |++++.. .++++++|.+.++.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~- 193 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP- 193 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH-
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH-
Confidence 6665 6899999999999999999999999999998 5 776 67 8888763 45677777766543
Q ss_pred CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc-------CCCCeEeeccccccc
Q 015952 161 SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-------CEPSVIRKVNFVIFV 233 (397)
Q Consensus 161 ~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~-------~~P~iLllDEP~~si 233 (397)
.++.+|+.+.... .|.+|+|++.++++++ .+|++|++||| ++.
T Consensus 194 ---~~v~~ni~~~~~~--------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~-ta~ 243 (349)
T 1pzn_A 194 ---DEVLKHIYVARAF--------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL-TSH 243 (349)
T ss_dssp ---HHHGGGEEEEECC--------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS-STT
T ss_pred ---HHHhhCEEEEecC--------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc-hHh
Confidence 2666666543210 1567888888888888 78999955555 334
Q ss_pred cchhhhhccccccchh---hhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 234 VDGLAVLKSMEGDSDV---EKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 234 LDEpT~~s~LD~~~~~---~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
+|... .+-....+. ....+..+.++ ..+.|+|||+++|. .....++.. +....|++++.+....++
T Consensus 244 ld~~~--~~~~~~~~r~~~~~~~l~~L~~l------a~~~~~tvii~~h~~~~~~~~~~~~-~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 244 FRSEY--IGRGALAERQQKLAKHLADLHRL------ANLYDIAVFVTNQVQARPDAFFGDP-TRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHHC--CSTTTHHHHHHHHHHHHHHHHHH------HHHTTCEEEEEEECC----------------CCCCCTTCSEEEE
T ss_pred hhhhh--cccccHHHHHHHHHHHHHHHHHH------HHHcCcEEEEEcccccccccccCCc-cccCCcceEeecCcEEEE
Confidence 43321 000000000 11122222222 12368999999993 332233334 347778887777655554
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-18 Score=182.49 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=102.9
Q ss_pred CeEEEEeEEEEECCCceEeeccCceee----------eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC-cccE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLS----------DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQ 138 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~i----------sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p-~~G~ 138 (397)
+.++++|+++.|+.... .. |+.+ +++++. ++|+||||||||||+++|+|++. | ++|.
T Consensus 9 ~~i~~~~l~~~~~~~~r-~l---l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~ 76 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVR-PC---IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGI 76 (608)
T ss_dssp -----------CHHHHH-HH---HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------
T ss_pred chhhhhhhhHHHHHHHH-HH---HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCe
Confidence 46889999999953210 11 3333 466664 99999999999999999999998 8 7999
Q ss_pred EEECcee-------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCCh
Q 015952 139 VTYNSSV-------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 205 (397)
Q Consensus 139 I~i~G~~-------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSG 205 (397)
|+++|.. ..+||+||++.+++ .++|.+|+.+.. ..+...+. ..|
T Consensus 77 vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~---~~tv~e~i~~~~-----------~~~~~~~~--------~~s- 133 (608)
T 3szr_A 77 VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISD---ASEVEKEINKAQ-----------NAIAGEGM--------GIS- 133 (608)
T ss_dssp CCCSCEEEEEEECSSSSCCEEEESCC---CCCCC---HHHHHTTHHHHH-----------HHHHCSSS--------CCC-
T ss_pred EEEcCEEEEEecCCccccceeEEeeecccccCCC---HHHHHHHHHHHH-----------HHhcCCcc--------ccc-
Confidence 9999862 46899999988876 679999886531 11111110 011
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-----
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG----- 280 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~----- 280 (397)
++++.++.+....|+++++||| .+..-|| +++|..... ...+.+.+++ ....+.+++++||+
T Consensus 134 --~~~i~l~i~~~~~p~LlLlDeP--Gi~~~~t--~~LD~~~~~--~i~~li~~~l-----~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 134 --HELITLEISSRDVPDLTLIDLP--GITRVAV--GNQPADIGY--KIKTLIKKYI-----QRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp --SCCEEEEEEESSSCCEEEEECC--C--------CCSSCSHHH--HHHHHHHHHT-----TSSSCCEEEEEESSSCTTT
T ss_pred --hHHHHHHhcCCCCCceeEeeCC--Ccccccc--CCCCHHHHH--HHHHHHHHHH-----hcCCCCceEEEeccchhcc
Confidence 1333444455668999966666 2233337 888876543 3445555542 23467888999993
Q ss_pred -hHHcc--------ccEEEEEeeCCEEeeeCCcccc
Q 015952 281 -DLLSL--------TDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 281 -~~~~~--------aDrI~v~l~~G~iv~~g~~~el 307 (397)
.+.++ ...| +++.++.++..|+.+++
T Consensus 201 ~~~l~la~~v~~~g~rtI-~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTI-GILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CHHHHHHHHHCSSCCSEE-EEEECGGGSSSSSTTCC
T ss_pred HHHHHHHHHHhhcCCceE-EEecchhhcCcccHHHH
Confidence 11222 2334 56888888888876544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-18 Score=152.97 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=86.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---eCc
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 147 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---~~~ 147 (397)
+|+++|++|.|+ ..+ +++ |.+++|..++|+|+||||||||+|.|+|........|+.|.+.+.+. ...
T Consensus 3 ~l~~~~~~~~~~--~~~-----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMS--APD-----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEE--ESS-----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheee--cCC-----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 689999999995 223 777 89999999999999999999999999998810001188888765332 011
Q ss_pred EEEEecCCCCCCCC--CC----c--cHHHHHh---cC--------CC-ChhhHHHHHHHHHHHCCCcc--cccCCCCCCh
Q 015952 148 GTYFLQEYTIPRGS--NS----F--SLYDTRS---LS--------DD-ASDNINMIKLWIMEGVRHGE--LVIRRSDSSS 205 (397)
Q Consensus 148 ig~v~Q~~~l~~~~--~~----l--tv~eni~---~~--------~~-~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSG 205 (397)
+-++ .-+...... .. + .+...+. .. .. ........+.+++...++.. ...+...+|+
T Consensus 74 ~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 74 KRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp EEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred EEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 1111 111110000 00 0 0001000 00 00 11122233445666777743 2455666799
Q ss_pred HHHHH-HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 206 LRNRM-RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 206 GqkQR-vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
||+|| +..|++++.+|.++ ++|||| |++|...-. ...+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~--Sal~~~~~~--~l~~~l~~~ 196 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGD--------VQVETF--SSLKKQGVD--KLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSC--------EEEEEC--BTTTTBSHH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCC--------CceEEE--eecCCCCHH--HHHHHHHHH
Confidence 99999 89999999999988 556666 788865443 344444443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-18 Score=170.72 Aligned_cols=135 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc--EEEECce---
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS--- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G--~I~i~G~--- 144 (397)
.+++++||+++|+. ..+ ++++||+| +|+||||||||||+|+|+|+.. +..| .+.+++.
T Consensus 10 ~~l~~~~l~~~y~~-~~v-----l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-----~~~~~~~~~~~~~~t~ 72 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSV-----KRGFEFTL------MVVGESGLGKSTLINSLFLTDL-----YSPEYPGPSHRIKKTV 72 (418)
T ss_dssp -----CCCCCCTTT-TTC-----C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-----CCCCCCSCC-----CC
T ss_pred CcEEEEecceeECC-EEE-----ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-----CCCCCCCcccCCccce
Confidence 47999999999964 324 99999998 9999999999999999999987 4333 2222211
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh-hhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS-DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~-~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
...+++++|+..++. .+|++||+.++.... ......+.+.++ ..++.+++||++||||++.+|+
T Consensus 73 ~~~~i~~v~q~~~~~~---~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 73 QVEQSKVLIKEGGVQL---LLTIVDTPGFGDAVDNSNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EEEEEECC------CE---EEEEEECC-----------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-
T ss_pred eeeeEEEEEecCCccc---ceeeeechhhhhhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCC
Confidence 245789999877664 689999998875411 110011111111 1235577889999999999999
Q ss_pred ---eEeeccccccccchhhhhcccc
Q 015952 223 ---VIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 223 ---iLllDEP~~siLDEpT~~s~LD 244 (397)
+| ++||||. .++|
T Consensus 139 ~~vlL--------~ldePt~-~~L~ 154 (418)
T 2qag_C 139 VQCCL--------YFIAPSG-HGLK 154 (418)
T ss_dssp CCEEE--------EECCC-C-CSCC
T ss_pred eeEEE--------EEecCcc-cCCC
Confidence 89 5566662 3555
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-17 Score=147.88 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=95.5
Q ss_pred ceeeeE-EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHH-
Q 015952 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR- 170 (397)
Q Consensus 93 L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni- 170 (397)
|+++.. .+++|++++|+||||||||||++.|++... +..|.|.+.+. +.. . ..+.+.+
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~---------~~~--~----~~~~~~~~ 71 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTT---------EES--R----DSIIRQAK 71 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEES---------SSC--H----HHHHHHHH
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEc---------ccC--H----HHHHHHHH
Confidence 888887 899999999999999999999999999988 87787776442 100 0 0111111
Q ss_pred hcCCCChhhHHH---HHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccc--
Q 015952 171 SLSDDASDNINM---IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSM-- 243 (397)
Q Consensus 171 ~~~~~~~~~~~~---~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~L-- 243 (397)
.++......... .++.....++- . ......|.++.++...+.+...+|+ ++ ++|||| +.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--------ilDe~~--~~~~~ 138 (235)
T 2w0m_A 72 QFNWDFEEYIEKKLIIIDALMKEKED-Q--WSLVNLTPEELVNKVIEAKQKLGYGKARL--------VIDSVS--ALFLD 138 (235)
T ss_dssp HTTCCCGGGBTTTEEEEECCC----C-T--TBCSSCCHHHHHHHHHHHHHHHCSSCEEE--------EEETGG--GGSSS
T ss_pred HhcchHHHHhhCCEEEEeccccccCc-e--eeecCCCHHHHHHHHHHHHHhhCCCceEE--------EEECch--HhhcC
Confidence 011000000000 00000000000 0 0012239999999988888888999 99 555555 333
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEechh----------HHccccEEEEEeeCCE
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD----------LLSLTDRARIRTYLGE 297 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~----------~~~~aDrI~v~l~~G~ 297 (397)
|+.. ....++.+.++. .+.|.|||++||+. +..+||+| ++|+..+
T Consensus 139 d~~~--~~~~~~~l~~~~------~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~v-i~l~~~~ 193 (235)
T 2w0m_A 139 KPAM--ARKISYYLKRVL------NKWNFTIYATSQYAITTSQAFGFGVEHVADGI-IRFRRMI 193 (235)
T ss_dssp CGGG--HHHHHHHHHHHH------HHTTEEEEEEEC-----------CHHHHCSEE-EEEEEEE
T ss_pred CHHH--HHHHHHHHHHHH------HhCCCeEEEEeccCcccccccccchheeeeEE-EEEEEEe
Confidence 4221 123344444331 24689999999953 78899999 5687643
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-17 Score=161.82 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=87.5
Q ss_pred EeEEEEECCCceEeeccCceeeeE-------EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECcee-
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSV- 145 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl-------~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~- 145 (397)
.+++++|.... ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+..
T Consensus 92 ~~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 92 AGAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIEDPI 162 (356)
T ss_dssp EEEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEESSC
T ss_pred cEEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEccCcH
Confidence 46677763322 112 666666 678899999999999999999999999999 87 4666432211
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
...++++|..... ..++-.+ +|||||..+
T Consensus 163 e~~~~~~~~~v~q~~~~~------------------------------------------~~~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 163 EFVHESKKCLVNQREVHR------------------------------------------DTLGFSE----ALRSALRED 196 (356)
T ss_dssp CSCCCCSSSEEEEEEBTT------------------------------------------TBSCHHH----HHHHHTTSC
T ss_pred Hhhhhccccceeeeeecc------------------------------------------ccCCHHH----HHHHHhhhC
Confidence 0111121111000 0011111 999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCC
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLG 296 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G 296 (397)
|++|++||| | | ....+.+.+. ...|+||+++||+ .+...|||+ +.|..|
T Consensus 197 PdvillDEp--------~-----d------~e~~~~~~~~-------~~~G~~vl~t~H~~~~~~~~dRl-i~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEM--------R-----D------LETIRLALTA-------AETGHLVFGTLHTTSAAKTIDRV-VDVFPA 246 (356)
T ss_dssp CSEEEESCC--------C-----S------HHHHHHHHHH-------HHTTCEEEEEESCSSHHHHHHHH-HHTSCH
T ss_pred cCEEecCCC--------C-----C------HHHHHHHHHH-------HhcCCEEEEEEccChHHHHHHHH-hhhcCc
Confidence 999966666 3 1 1122333322 2469999999994 555889999 456543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-18 Score=173.77 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=102.9
Q ss_pred ceeeeEEEcC--CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc----cEEEECceeCcEEEEecCCCCCCCCCCccH
Q 015952 93 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 93 L~~isl~I~~--Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~----G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
.+.|+++|++ |+.++|+||||||||||+|+|+|+++ |++ |++.+++.... ++..+.. ...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~-----~~~~~~~----~~~ 223 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGG-----DEQAMQY----SDY 223 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSS-----CTTSSCT----TTH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCC-----CcccCCh----hHH
Confidence 5679999999 99999999999999999999999999 998 88776431000 0000100 112
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHCCC---cccccCCCCCChHHHHHHHHHHHH-cCCCCeEeecc---ccccc-cchhh
Q 015952 167 YDTRSLSDDASDNINMIKLWIMEGVRH---GELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVN---FVIFV-VDGLA 238 (397)
Q Consensus 167 ~eni~~~~~~~~~~~~~~~~ll~~vgl---~~~~~~~~~lSGGqkQRvaIArAL-~~~P~iLllDE---P~~si-LDEpT 238 (397)
+++.+... ..........+.+-+ ......+..+|+|++||..+++++ ..+|+++++|| | . -|.++
T Consensus 224 -~~I~~~~q---~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p---~~~~g~~ 296 (365)
T 1lw7_A 224 -PQMALGHQ---RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTE---WVDDGLR 296 (365)
T ss_dssp -HHHHHHHH---HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC----------
T ss_pred -HHHHHHHH---HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCC---cccCCCc
Confidence 33333210 000000000010000 001112223467778888888887 47999998888 4 2 22233
Q ss_pred hhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 239 VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 239 ~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
.++|..... ...+.+.++. .+.|.+||+++| +.+.++++++. .+++ ++..++++++.
T Consensus 297 --~sld~~~r~--~l~~~l~~l~------~~~~~~ililde~~~~~r~~~~i~-~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 297 --SLGSQKQRQ--QFQQLLKKLL------DKYKVPYIEIESPSYLDRYNQVKA-VIEK--VLNEEEISELQ 354 (365)
T ss_dssp ------CCSHH--HHHHHHHHHH------HGGGCCCEEEECSSHHHHHHHHHH-HHHH--HTSCCCCSSCC
T ss_pred --CCccHHHHH--HHHHHHHHHH------HHcCCCEEEeCCCCHHHHHHHHHH-HHHH--HhcccchhHhh
Confidence 456655443 3344443332 234789999999 58888889884 4554 55566666653
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-16 Score=174.22 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=93.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++|+||+ ++|++++|+||||||||||+|+|+|+... ...|.. +-.....+++++| ++. .+++.||+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q~G~~-vpa~~~~i~~~~~---i~~---~~~~~d~l~~ 665 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AYIGSY-VPAQKVEIGPIDR---IFT---RVGAADDLAS 665 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HTTTCC-BSSSEEEECCCCE---EEE---EEC-------
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----HhcCcc-cchhcccceeHHH---HHh---hCCHHHHHHh
Confidence 9999999 99999999999999999999999998540 122211 1111223455544 222 2455554422
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhH
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~ 252 (397)
+ ...+|++|++ ++.+..++.+|+++ +||||+ +++|+......
T Consensus 666 ~--------------------------~stf~~e~~~-~~~il~~a~~psLl--------LLDEp~--~Gtd~~d~~~i- 707 (800)
T 1wb9_A 666 G--------------------------RSTFMVEMTE-TANILHNATEYSLV--------LMDEIG--RGTSTYDGLSL- 707 (800)
T ss_dssp ------------------------------CHHHHHH-HHHHHHHCCTTEEE--------EEESCC--CCSSSSHHHHH-
T ss_pred h--------------------------hhhhhHHHHH-HHHHHHhccCCCEE--------EEECCC--CCCChhHHHHH-
Confidence 1 1234666654 44555679999999 555555 77775543311
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCC
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
....+..+. .+.|.++|++||+ ++..+||++ ..+.+|++..+..
T Consensus 708 ~~~ll~~l~------~~~g~~vl~~TH~~el~~l~d~~-~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 708 AWACAENLA------NKIKALTLFATHYFELTQLPEKM-EGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHH------HTTCCEEEEECSCGGGGGHHHHS-TTEEEEEEEEEEE
T ss_pred HHHHHHHHH------hccCCeEEEEeCCHHHHHHhhhh-hceEEEEEEEEEc
Confidence 123333321 1258999999995 666789987 4578888765543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=147.90 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEE
Q 015952 202 DSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 277 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIiv 277 (397)
.+|||||||++||++|+ .+|+++|| |||+ ++||+.... ...+.+.++ ...+.++|++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lll--------DEp~--~~LD~~~~~--~l~~~l~~~-------~~~~~~~ii~ 393 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVL--------DEVD--AALDITNVQ--RIAAYIRRH-------RNPDLQFIVI 393 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEE--------SSTT--TTCCHHHHH--HHHHHHHHH-------CBTTBEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEe--------CCCc--ccCCHHHHH--HHHHHHHHH-------hcCCCEEEEE
Confidence 47999999999999999 68999955 5555 666644332 233444332 1347899999
Q ss_pred ech-hHHccccEEEEEee
Q 015952 278 THG-DLLSLTDRARIRTY 294 (397)
Q Consensus 278 TH~-~~~~~aDrI~v~l~ 294 (397)
||+ .....||+++ .+.
T Consensus 394 th~~~~~~~~d~~~-~~~ 410 (430)
T 1w1w_A 394 SLKNTMFEKSDALV-GVY 410 (430)
T ss_dssp CSCHHHHTTCSEEE-EEE
T ss_pred ECCHHHHHhCCEEE-EEE
Confidence 995 6778899995 454
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=162.74 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccccccchhhhHHHH
Q 015952 180 INMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 255 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~ 255 (397)
+..++. .+..+|+++ ......+|||||+|||+||+||+.+|+ +| +||||| ++||+.... ...+
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~ll--------ILDEPT--~~Ld~~~~~--~L~~ 422 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVY--------VLDEPS--AGLHPADTE--ALLS 422 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEE--------EEECTT--TTCCGGGHH--HHHH
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEE--------EeeCcc--ccCCHHHHH--HHHH
Confidence 334444 688999965 366788999999999999999999994 99 666667 788755433 3444
Q ss_pred HHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 256 IVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 256 ~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.++ .+.|.|||+|+|+ ++...||+| ++| ++|+++..|+++++...+.
T Consensus 423 ~l~~L-------~~~G~TVIvVeHdl~~l~~aD~i-i~lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 423 ALENL-------KRGGNSLFVVEHDLDVIRRADWL-VDVGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHH-------HTTTCEEEEECCCHHHHTTCSEE-EEECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHH-------HHcCCEEEEEcCCHHHHHhCCEE-EEeCCCcccCCCEEEEecCHHHHHhchH
Confidence 44444 2469999999996 667789999 569 7999999999999887543
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-15 Score=129.96 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=58.2
Q ss_pred ccCCCCCChHHHHHHHHH------HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC
Q 015952 197 VIRRSDSSSLRNRMRCKA------HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD 270 (397)
Q Consensus 197 ~~~~~~lSGGqkQRvaIA------rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~ 270 (397)
..++.+||||||||++|| |||+.+|+++++ |||| ++||..... ...+.+.++ .+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllL--------DEPt--~~LD~~~~~--~l~~~l~~~-------~~~ 112 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLIL--------DEPT--PYLDEERRR--KLITIMERY-------LKK 112 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEE--------ESCS--CTTCHHHHH--HHHHHHHHT-------GGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEE--------ECCC--ccCCHHHHH--HHHHHHHHH-------Hcc
Confidence 355788999999999876 999999999955 5555 666644332 233444332 135
Q ss_pred CceEEEEech-hHHccccEEEEEe--eCCE
Q 015952 271 DKPVVVVTHG-DLLSLTDRARIRT--YLGE 297 (397)
Q Consensus 271 g~TVIivTH~-~~~~~aDrI~v~l--~~G~ 297 (397)
|+|||++||+ ++..+||++ ++| ++|.
T Consensus 113 ~~tiiivsH~~~~~~~~d~i-i~l~~~~g~ 141 (148)
T 1f2t_B 113 IPQVILVSHDEELKDAADHV-IRISLENGS 141 (148)
T ss_dssp SSEEEEEESCGGGGGGCSEE-EEEEEETTE
T ss_pred CCEEEEEEChHHHHHhCCEE-EEEEcCCCe
Confidence 8899999996 778899999 568 4554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=139.34 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=90.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----eCcEEEEecCCCCCCCCCCccHHHHH-hcC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----VGDGTYFLQEYTIPRGSNSFSLYDTR-SLS 173 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----~~~ig~v~Q~~~l~~~~~~ltv~eni-~~~ 173 (397)
.+++|++++|+||||||||||++.+++... .|.+. .|. ...+.|+..+.... .+...+ .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-------~g~~~-~g~~~~~~~~v~~~~~e~~~~------~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-------GGPDL-LEVGELPTGPVIYLPAEDPPT------AIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-------TCCCT-TCCCCCCCCCEEEEESSSCHH------HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-------cCCCc-CCCccCCCccEEEEECCCCHH------HHHHHHHHHH
Confidence 478999999999999999999999998665 24442 232 23466765543211 122211 122
Q ss_pred CCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchh-hh
Q 015952 174 DDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV-EK 251 (397)
Q Consensus 174 ~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~-~~ 251 (397)
.... .....++++.+.+.. ....+..+|+||+|++ ++++.+|+++ ++||||.+..+|..... ..
T Consensus 92 ~~~~---~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~li--------vlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 AHLS---AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLM--------VLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp TTSC---HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEE--------EEECGGGGCCSCTTCHHHHH
T ss_pred hhcC---hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEE--------EECCHHHhcCCCcCchHHHH
Confidence 1111 123455677777743 3456778899998865 6888999999 66666632255543221 12
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
..++.+.++. .+.|+|||+++|+
T Consensus 158 ~~~~~L~~l~------~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 158 QVIGRMEAIA------ADTGCSIVFLHHA 180 (279)
T ss_dssp HHHHHHHHHH------HHHCCEEEEEEEC
T ss_pred HHHHHHHHHH------HHcCCEEEEEecC
Confidence 2334443331 2458999999994
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-16 Score=162.77 Aligned_cols=175 Identities=10% Similarity=0.045 Sum_probs=106.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------------eCcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------------VGDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------------~~~ig~v~Q~~~ 156 (397)
-+++||++++|++++|+||||||||||+++|+|+++ +++|+|.++|. +++++|++|++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 467999999999999999999999999999999999 99999999753 235899999987
Q ss_pred CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc-CCCCeEeeccccccccc
Q 015952 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVD 235 (397)
Q Consensus 157 l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~-~~P~iLllDEP~~siLD 235 (397)
++. .+++++|+.++...... . -+++..|..+.. ..+-.-.+|++.++|++. ..|.-++| ++|
T Consensus 358 ~~p---~~tV~e~l~~a~~~~~D---v--VLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLL------vLD 420 (503)
T 2yhs_A 358 ADS---ASVIFDAIQAAKARNID---V--LIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVML------TID 420 (503)
T ss_dssp CCH---HHHHHHHHHHHHHTTCS---E--EEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEE------EEE
T ss_pred cCH---HHHHHHHHHHHHhcCCC---E--EEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEE------Eec
Confidence 654 57999998765320000 0 012222221100 011112357889999774 45752211 566
Q ss_pred hhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEee--CCEEeeeCCcccc
Q 015952 236 GLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTY--LGELLGIPPAKQI 307 (397)
Q Consensus 236 EpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~--~G~iv~~g~~~el 307 (397)
.-|+ .+ .++.+..+ ...-+.|.|++|| |...+.+..+.+ ++ ...|.+.|.-+.+
T Consensus 421 attG---q~--------al~~ak~f------~~~~~itgvIlTKLD~takgG~~lsi-~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 421 ASTG---QN--------AVSQAKLF------HEAVGLTGITLTKLDGTAKGGVIFSV-ADQFGIPIRYIGVGERI 477 (503)
T ss_dssp GGGT---HH--------HHHHHHHH------HHHTCCSEEEEECGGGCSCCTHHHHH-HHHHCCCEEEEECSSSG
T ss_pred Cccc---HH--------HHHHHHHH------HhhcCCCEEEEEcCCCcccccHHHHH-HHHHCCCEEEEecCCCh
Confidence 4442 11 12222221 1124789999999 654454444422 22 2345555554433
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-16 Score=157.21 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=88.5
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------CcEEEEe-cCCCCCCCCCCc
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--------GDGTYFL-QEYTIPRGSNSF 164 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--------~~ig~v~-Q~~~l~~~~~~l 164 (397)
+++||.|++|++++|+||||||||||+|+|+|+++ |++|.|.++|.+ ..++|++ |+..+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 89999999999999999999999999999999999 999999998741 2233433 22110
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
.++++..+|..|+.++..+|+.+++||+ +.
T Consensus 234 -------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~--------r~----- 263 (361)
T 2gza_A 234 -------------------------------------EENAPVTAATLLRSCLRMKPTRILLAEL--------RG----- 263 (361)
T ss_dssp ------------------------------------------CCHHHHHHHHTTSCCSEEEESCC--------CS-----
T ss_pred -------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCc--------hH-----
Confidence 0134456888999999999999955554 41
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEeeCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLG 296 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~~G 296 (397)
. ...+.+..+- ....|++.++| +.+...+||+ +.+..|
T Consensus 264 ---~---~~~~~l~~l~-------~g~~~~l~t~H~~~~~~~~~Rl-~~l~~~ 302 (361)
T 2gza_A 264 ---G---EAYDFINVAA-------SGHGGSITSCHAGSCELTFERL-ALMVLQ 302 (361)
T ss_dssp ---T---HHHHHHHHHH-------TTCCSCEEEEECSSHHHHHHHH-HHHHTT
T ss_pred ---H---HHHHHHHHHh-------cCCCeEEEEECCCCHHHHHHHH-HHHHhc
Confidence 1 1223333221 22347889999 5788889999 446554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-15 Score=153.47 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=102.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.+++++ +++|++ . . |+++||+|++|++ ++|+||||||||||+|+|+|+.-.. ...+...-......+
T Consensus 16 ~l~~~~-~~~y~~-~-~-----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g---~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-L-P-----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEG---EPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC----C-----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC----------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-e-e-----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccC---CcCCCCCccceEeeE
Confidence 467777 888842 1 2 8999999999999 9999999999999999999985311 000000001113468
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChh---------hHHHHHHHHHHHC-CCcc-----cccC-----------CCC
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASD---------NINMIKLWIMEGV-RHGE-----LVIR-----------RSD 202 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~---------~~~~~~~~ll~~v-gl~~-----~~~~-----------~~~ 202 (397)
+|++|++.++. .+|+.||+.++..... ........++... ++.. ...+ ...
T Consensus 85 ~~v~Q~~~l~~---~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 85 TYDLQESNVRL---KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEC--CEE---EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEeecCcccc---ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 99999988765 6899999998764211 1233444555554 3310 0011 123
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
++-.. +.|+++|..+++++ ++|+|+ ..|.. .+.....+.+.+.+ ...|.+|+.++.
T Consensus 162 l~~~D---ieilk~L~~~~~vI--------~Vi~Kt--D~Lt~--~E~~~l~~~I~~~L------~~~gi~I~~is~ 217 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNII--------PIIAKA--DAISK--SELTKFKIKITSEL------VSNGVQIYQFPT 217 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEE--------EEESCG--GGSCH--HHHHHHHHHHHHHH------BTTBCCCCCCC-
T ss_pred CCHHH---HHHHHHHhhCCCEE--------EEEcch--hccch--HHHHHHHHHHHHHH------HHcCCcEEecCC
Confidence 44444 89999999999999 555555 33331 11223445555422 247889998887
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-15 Score=146.66 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=85.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEEC-ce------eCcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SS------VGDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~-G~------~~~ig~v~Q~~~l~~~~~~lt 165 (397)
++++++. .+|++++|+||||||||||+|+|+|+... |+.|+|.++ |. ...+++++|+..++. ..+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d---tpg 277 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID---SPG 277 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC-------------CCCEEEECTTSCEEEE---CHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCccceEEEEEEEECCCCEecC---ccc
Confidence 6777775 47999999999999999999999998751 678999887 53 357899999987765 468
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcC
Q 015952 166 LYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 166 v~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.++.... ...++....+.++++.+++.. ....+.++| ||+||++||++++.
T Consensus 278 v~e~~l~~-l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 278 VREFGLWH-LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp HHTCCCCC-CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred HHHhhhcC-CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 88753222 134455666778899999944 566678899 99999999998754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-17 Score=159.79 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=74.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc--------CCCCCCCcccEEEECcee-------------------------CcEEE
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSV-------------------------GDGTY 150 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~--------~~~~~~p~~G~I~i~G~~-------------------------~~ig~ 150 (397)
++++|+|+||||||||+|+|.|+. . |+.|+|.++|.. ..+++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~ 79 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLD 79 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHH
Confidence 689999999999999999999997 6 899999999862 12455
Q ss_pred E---ecCCCCCCCCCCccHHHHHhcCCCChhhHHH-----H------HHHHHHHCCCcccccCCCCCChHHHHHHHHHHH
Q 015952 151 F---LQEYTIPRGSNSFSLYDTRSLSDDASDNINM-----I------KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 151 v---~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~-----~------~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA 216 (397)
+ +|++.++. ..++.||..++... .-... . +..++..+++.....+..++|+||+||+..+++
T Consensus 80 l~~~~q~~~~~~---~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 80 LLDNLDKGNIQF---DRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHHHTSCCC---SEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEE
T ss_pred HHhHHhcCCCCC---CEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEE
Confidence 5 57765533 47888888765321 00000 0 111222333322223334689999999977777
Q ss_pred HcCCCCeE
Q 015952 217 IGCEPSVI 224 (397)
Q Consensus 217 L~~~P~iL 224 (397)
++.+|+++
T Consensus 156 ll~k~dl~ 163 (318)
T 1nij_A 156 LLTKTDVA 163 (318)
T ss_dssp EEECTTTC
T ss_pred EEECcccC
Confidence 77777765
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-14 Score=137.69 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=100.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCCCCCCCC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYTIPRGSN 162 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~l~~~~~ 162 (397)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.. ..+.+++|.+.+++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p--- 196 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADP--- 196 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCH---
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCH---
Confidence 347899999999999999999999999999 999999999862 23569999987765
Q ss_pred CccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcc
Q 015952 163 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 163 ~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
.+++++|+.++..... .. -+++..|.. .....-+.+.-.++|++..++.++ +||.+|.
T Consensus 197 ~~~v~e~l~~~~~~~~---d~--vliDtaG~~------~~~~~l~~eL~~i~ral~~de~ll--------vLDa~t~--- 254 (328)
T 3e70_C 197 AAVAYDAIQHAKARGI---DV--VLIDTAGRS------ETNRNLMDEMKKIARVTKPNLVIF--------VGDALAG--- 254 (328)
T ss_dssp HHHHHHHHHHHHHHTC---SE--EEEEECCSC------CTTTCHHHHHHHHHHHHCCSEEEE--------EEEGGGT---
T ss_pred HHHHHHHHHHHHhccc---hh--hHHhhccch------hHHHHHHHHHHHHHHHhcCCCCEE--------EEecHHH---
Confidence 6799999865421000 00 001111211 111233455556899999777777 8887763
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhH----------HccccEEEEEeeCCEEe
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDL----------LSLTDRARIRTYLGELL 299 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~----------~~~aDrI~v~l~~G~iv 299 (397)
. ..++.+..+ ....+.|+|++|| |.. ....-.| .++..|+-+
T Consensus 255 -----~---~~~~~~~~~------~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi-~~i~~Ge~v 307 (328)
T 3e70_C 255 -----N---AIVEQARQF------NEAVKIDGIILTKLDADARGGAALSISYVIDAPI-LFVGVGQGY 307 (328)
T ss_dssp -----T---HHHHHHHHH------HHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCE-EEEECSSST
T ss_pred -----H---HHHHHHHHH------HHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCE-EEEeCCCCc
Confidence 1 122333222 1135889999999 522 2233456 456666654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=145.74 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=79.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECcee------CcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSV------GDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~------~~ig~v~Q~~~l~~~~~~lt 165 (397)
|++++ +++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.. ..+++++|.
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e~~~~~~~~~v~Q~----------- 189 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIEYVFKHKKSIVNQR----------- 189 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCCSCCCCSSSEEEEE-----------
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHhhhhccCceEEEee-----------
Confidence 45544 78999999999999999999999999999 88 8999765531 112222221
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 166 LYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 166 v~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
.+|++ +..+ +.+|+++|..+|++|++||| - |+.+
T Consensus 190 ------------------------~~g~~-----~~~~------~~~l~~~L~~~pd~illdE~---~-d~e~------- 223 (372)
T 2ewv_A 190 ------------------------EVGED-----TKSF------ADALRAALREDPDVIFVGEM---R-DLET------- 223 (372)
T ss_dssp ------------------------EBTTT-----BSCS------HHHHHHHTTSCCSEEEESCC---C-SHHH-------
T ss_pred ------------------------ecCCC-----HHHH------HHHHHHHhhhCcCEEEECCC---C-CHHH-------
Confidence 12221 2233 46999999999999966666 1 2111
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
.....+. ...|.+|+.++|+ .+...+||+
T Consensus 224 --------~~~~l~~-------~~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 224 --------VETALRA-------AETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp --------HHHHHHH-------HTTTCEEEECCCCCSHHHHHHHH
T ss_pred --------HHHHHHH-------HhcCCEEEEEECcchHHHHHHHH
Confidence 1111111 2458899999993 677777776
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-17 Score=159.93 Aligned_cols=80 Identities=9% Similarity=0.045 Sum_probs=68.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
+++++++|+++.|+. ..+ |+++||++++|++++|+||||||||||+|+|+|++. |++|+|.+.|.
T Consensus 27 i~~ie~~~~~~~~~~-~~~-----l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 27 ITLAESRRADHRAAV-RDL-----IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPSS 95 (337)
T ss_dssp HHHHTCSSHHHHHHH-HHH-----HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGGG
T ss_pred HHHHeeCCcccccCh-HHH-----HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCcc
Confidence 346788899999942 224 999999999999999999999999999999999999 99999999875
Q ss_pred ----------eCcEEEEecCCCCCC
Q 015952 145 ----------VGDGTYFLQEYTIPR 159 (397)
Q Consensus 145 ----------~~~ig~v~Q~~~l~~ 159 (397)
+.++++++|+++++.
T Consensus 96 ~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 96 TRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp GSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred cccccchHHHhhhheeeccCccccc
Confidence 235789999987753
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-15 Score=137.98 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=45.3
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC--cccEEEECce------eCcEEEEecCCCCCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSS------VGDGTYFLQEYTIPR 159 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p--~~G~I~i~G~------~~~ig~v~Q~~~l~~ 159 (397)
-.-..++|++++|+||||||||||+|+|+|+++ | .+|.|.+.+. +..++|+||++..|.
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCCCCcccccCceEEECCHHHHH
Confidence 344668999999999999999999999999998 6 6899988775 235788888765544
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-18 Score=151.24 Aligned_cols=166 Identities=8% Similarity=-0.013 Sum_probs=90.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
|++++|+||||||||||+++|++ +.+|.+.++|.. ..+|+++|...... ..++++++.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~-- 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDIINHMVVGGYRPPWESDEL---LALTWKNITDLTVN-- 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHHHTTCCTTCCCGGGCHHH---HHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccchhhhhccccccCccchhH---HHHHHHHHHHHHHH--
Confidence 68999999999999999999986 467889998852 23455555432211 23566665432100
Q ss_pred hHHHHHHHHHHHCCCcccccCCCCC--ChHHHHHHHHHH------HHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 179 NINMIKLWIMEGVRHGELVIRRSDS--SSLRNRMRCKAH------KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~~~~~~~~l--SGGqkQRvaIAr------AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
........+++.+......+...++ |+||+|++.++. +++.+|+...+|+ . +|+....
T Consensus 69 ~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~----~---------ld~~~~~- 134 (189)
T 2bdt_A 69 FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE----Q---------MGERCLE- 134 (189)
T ss_dssp HHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----------------CGGGGH-
T ss_pred HHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc----c---------CCHHHHH-
Confidence 0000000001111000000111123 777777777776 7777777663331 1 2221111
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
. .+.+.++ .+.+.++|.+||. ++.++||+| + ++|+++..|+++-+
T Consensus 135 -~-~~~~~~~-------~~~~~~ii~tsh~~~~~~e~~~~~i-~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 135 -L-VEEFESK-------GIDERYFYNTSHLQPTNLNDIVKNL-K--TNPRFIFCMAGDPL 182 (189)
T ss_dssp -H-HHHHHHT-------TCCTTSEEECSSSCGGGHHHHHHHH-H--HCGGGSCC------
T ss_pred -H-HHHHhhc-------CCCccEEEeCCCCChhhHHHHHHHH-h--hCCcEEEeecCCch
Confidence 1 2333332 2357899999997 999999999 4 99999999988654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=125.42 Aligned_cols=158 Identities=12% Similarity=-0.038 Sum_probs=86.7
Q ss_pred ceeeeE-EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
|+.+.. .+++|++++|+||||||||||++.+++ . +..+.++ +..+..+.. ..+.+...
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~----------i~~~~~~~~----~~~~~~~~ 67 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAY----------VDTEGGFSP----ERLVQMAE 67 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEE----------EESSCCCCH----HHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEE----------EECCCCCCH----HHHHHHHH
Confidence 666665 789999999999999999999999999 4 4333333 322221111 11222111
Q ss_pred cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChH--HHHHHHHHHHHcCC-CCeEeeccccccccchhhhhccccccch
Q 015952 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL--RNRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGG--qkQRvaIArAL~~~-P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
...... +++++.+ ...+.|++ ++|+++.+++++.+ |+++++||| ++++|.... . .....
T Consensus 68 ~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~-~~~l~~~~~--~-~~~~~ 129 (220)
T 2cvh_A 68 TRGLNP-------EEALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSI-TAHYRAEEN--R-SGLIA 129 (220)
T ss_dssp TTTCCH-------HHHHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECC-CCCTTGGGG--S-STTHH
T ss_pred hcCCCh-------HHHhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCc-HHHhhhcCc--h-HHHHH
Confidence 000000 1122221 12334444 46789999999986 999966555 333332110 0 00001
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech---------------hHHccccEEEEEeeCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---------------DLLSLTDRARIRTYLG 296 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---------------~~~~~aDrI~v~l~~G 296 (397)
.....++.+.++. .+.|.|||+++|. .+...||++ ++|+..
T Consensus 130 ~~~~~~~~L~~l~------~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~v-i~l~~~ 185 (220)
T 2cvh_A 130 ELSRQLQVLLWIA------RKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDI-LRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHH------HHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEE-EEEEEC
T ss_pred HHHHHHHHHHHHH------HHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEE-EEEEEe
Confidence 1111222233321 2358999999992 357899999 567654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-15 Score=143.89 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=81.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Cce---------e-CcEEEEecCCCCCCCC--CC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSS---------V-GDGTYFLQEYTIPRGS--NS 163 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~---------~-~~ig~v~Q~~~l~~~~--~~ 163 (397)
++.+|++++|+||||||||||+|+|+ +.+ |++|+|.+ +|+ . ..+||++|.|.+.... .+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~ 234 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMF 234 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGT
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCccccc
Confidence 45679999999999999999999999 999 99999999 775 1 3689999998764211 25
Q ss_pred ccHHHHH--hcCC--------C---ChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHH
Q 015952 164 FSLYDTR--SLSD--------D---ASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 164 ltv~eni--~~~~--------~---~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIAr 215 (397)
+|+ +|+ .|+. . ...+....+.++++.+++.. ...++..|||.+++++.|||
T Consensus 235 lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 235 VKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp SCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788 887 4541 1 22334457889999999953 46677888998889999886
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-16 Score=140.17 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=64.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCc---ccEEEECcee--------------CcEE----EEecCCCCCCCCC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSV--------------GDGT----YFLQEYTIPRGSN 162 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~---~G~I~i~G~~--------------~~ig----~v~Q~~~l~~~~~ 162 (397)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.. +.+| ++.|++.++-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE---
Confidence 5899999999999999999999999 87 8999999862 1344 5555443220
Q ss_pred CccHHHHHhcCCCChhhHHHHHHHHHHH-C-CCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 163 SFSLYDTRSLSDDASDNINMIKLWIMEG-V-RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 163 ~ltv~eni~~~~~~~~~~~~~~~~ll~~-v-gl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+ ...+....+.++++. + +++... ...+||||+||++||||++.+|++.
T Consensus 75 ----~~-------~~~~~~a~l~~~i~~~l~g~dt~i--~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 75 ----RR-------VSEEEGNDLDWIYERYLSDYDLVI--TEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----EE-------CCHHHHTCHHHHHHHHTTTCSEEE--EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ----ec-------CChhhhhCHHHHHHhhCCCCCEEE--ECCcCCCCCcEEEEEecccCCCccC
Confidence 00 001111122333333 3 342221 1138999999999999999999885
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-17 Score=164.68 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=86.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------------CcEEEEe------
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--------------GDGTYFL------ 152 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--------------~~ig~v~------ 152 (397)
|+++ + .++|++++|+||||||||||+++|+|++. |++|+|.+.+.. .++|+.|
T Consensus 159 L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 159 FRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 5555 3 37899999999999999999999999999 999999987752 2345655
Q ss_pred ---cCCCCC--CC-CCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc
Q 015952 153 ---QEYTIP--RG-SNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 153 ---Q~~~l~--~~-~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
|+|.+. .. ....|+.+++.+... ........+ ..+..+++... ..+..|||||+|| |||+|+
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~-~~~~~LSgg~~QR--LaraL~ 307 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPF-LISSSLLGVLAQR--LVRTLC 307 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHH-HHHHHEEEEEEEE--EEEEEC
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHH-HHHHHHHHHHHHH--hhhhhc
Confidence 887652 10 012588888866421 111122223 34667788543 2466789999999 999999
Q ss_pred CCCCeE
Q 015952 219 CEPSVI 224 (397)
Q Consensus 219 ~~P~iL 224 (397)
.+|++.
T Consensus 308 ~~p~~~ 313 (418)
T 1p9r_A 308 PDCKEP 313 (418)
T ss_dssp TTTCEE
T ss_pred CCCCcc
Confidence 999998
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-14 Score=129.26 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=65.0
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeC-----cE
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG-----DG 148 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~-----~i 148 (397)
.+|+++.|+. ..+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|..- ..
T Consensus 10 ~~~~~~~~g~-~~~-----l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~~~~~~~ 77 (158)
T 1htw_A 10 DEFSMLRFGK-KFA-----EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLVEEYNIA 77 (158)
T ss_dssp SHHHHHHHHH-HHH-----HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCEEEEEET
T ss_pred CHHHHHHHHH-HHH-----HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeeeeeccCC
Confidence 3456677742 223 99999999999999999999999999999999987 4679999988521 01
Q ss_pred EEEecCCCCCCCCCCccHHHHHhc
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
.++||++.+++ +|+.||+.+
T Consensus 78 ~~~~q~~~l~~----ltv~e~l~~ 97 (158)
T 1htw_A 78 GKMIYHFDLYR----LADPEELEF 97 (158)
T ss_dssp TEEEEEEECTT----CSCTTHHHH
T ss_pred Ccceecccccc----CCcHHHHHH
Confidence 27899887764 899888843
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-16 Score=138.60 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=71.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------CcEEEEecCCCCCCCCCCccHHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--------GDGTYFLQEYTIPRGSNSFSLYDTR 170 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--------~~ig~v~Q~~~l~~~~~~ltv~eni 170 (397)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.. ..++|++|+.. . ..++.+|+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~---~~~v~~~l 72 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--Q---NRMIMQIA 72 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--H---HHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccchhhhhhcccccCCccchhh--h---hHHHHHHH
Confidence 4789999999999999999999999996 457999998852 12355555432 1 35777776
Q ss_pred hcCCCChh--hHHHHHHHHHHHCCCccc---ccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 171 SLSDDASD--NINMIKLWIMEGVRHGEL---VIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 171 ~~~~~~~~--~~~~~~~~ll~~vgl~~~---~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+...... .....++.++..+++... ...+..+|+|++||+++||++.++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 73 ADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp HHHHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 54211000 000000000111122111 1123457999999999999999999876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-14 Score=133.41 Aligned_cols=112 Identities=16% Similarity=0.047 Sum_probs=68.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcC-CC---
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS-DD--- 175 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~-~~--- 175 (397)
.++|++++|+||||||||||+++|+|+++ |+ | ..+|+|+++...+. .+..+++... ..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~-g--------~~~g~v~~d~~~~~----~~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQ-G--------LPAEVVPMDGFHLD----NRLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HT-T--------CCEEEEESGGGBCC----HHHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hc-C--------CceEEEecCCCcCC----HHHHHHhcccccCCCC
Confidence 47899999999999999999999999998 75 3 24667776643332 2333443211 10
Q ss_pred ---ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH-HHHcCCCCeEeeccc
Q 015952 176 ---ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA-HKIGCEPSVIRKVNF 229 (397)
Q Consensus 176 ---~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA-rAL~~~P~iLllDEP 229 (397)
........+..+...-.+. ....+...+|+||+||+++| ++++.++.++++|||
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~ 139 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAP 139 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCST
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCc
Confidence 1111222233332221121 12334556799999999887 777777777634443
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-14 Score=138.13 Aligned_cols=102 Identities=18% Similarity=0.049 Sum_probs=70.2
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Ccee----------CcEEEEecCCCCCC-----
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV----------GDGTYFLQEYTIPR----- 159 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~~----------~~ig~v~Q~~~l~~----- 159 (397)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|+. +.+|||+|.|.+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~ 238 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIND 238 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCc
Confidence 4567899999999999999999999999999 99999999 7751 35899999986421
Q ss_pred --------CCCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCCc-c-cccCCCCCCh
Q 015952 160 --------GSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHG-E-LVIRRSDSSS 205 (397)
Q Consensus 160 --------~~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSG 205 (397)
..+++++ +|+.|+.. ...+...++.++++.++|. + ...+|..||+
T Consensus 239 ~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 239 IEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp SCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1236788 99888643 2234456788999999994 3 3555666664
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-13 Score=140.95 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=70.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----eCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----VGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
-++++|+++.|+.++|||+||||||||+|+|+|..+ .+.+. ...+|+++++.. . .++++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ftTl~p~~G~V~~~~~--~---~~~l~ 210 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----------KIAPYPFTTLSPNLGVVEVSEE--E---RFTLA 210 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----------EECCCTTCSSCCEEEEEECSSS--C---EEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----------cccCcccceecceeeEEEecCc--c---eEEEE
Confidence 578999999999999999999999999999999842 11111 223455554420 0 13333
Q ss_pred HHHhcCCC-------ChhhHH--HHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEee
Q 015952 168 DTRSLSDD-------ASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (397)
Q Consensus 168 eni~~~~~-------~~~~~~--~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLll 226 (397)
|+..+... .....+ +++..++..+++. .....++|+||+|++++|++|+..|.+|++
T Consensus 211 DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 211 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred eccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 33322110 000000 0011112222222 223455799999999999999999999944
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=115.78 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=54.7
Q ss_pred cCCCCCChHHHHHHHHHHHHcC----CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 198 IRRSDSSSLRNRMRCKAHKIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
.++..||||||||++|||+|+. .|+++ +||||| ++||+.... ...+.+.++ ..+.+
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~l--------lLDEp~--a~LD~~~~~--~~~~~l~~~--------~~~~~ 119 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFY--------LFDEID--AHLDDANVK--RVADLIKES--------SKESQ 119 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH--------TTTSE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEE--------EECCCc--cCCCHHHHH--HHHHHHHHh--------ccCCE
Confidence 3456789999999999999974 46999 555555 667744333 233444332 34568
Q ss_pred EEEEech-hHHccccEEEE-EeeCCE
Q 015952 274 VVVVTHG-DLLSLTDRARI-RTYLGE 297 (397)
Q Consensus 274 VIivTH~-~~~~~aDrI~v-~l~~G~ 297 (397)
+|+|||+ .+..+||+++. .+.+|.
T Consensus 120 ~ivith~~~~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 120 FIVITLRDVMMANADKIIGVSMRDGV 145 (173)
T ss_dssp EEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred EEEEEecHHHHHhCCEEEEEEecCCE
Confidence 9999994 77889999953 234553
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-14 Score=133.72 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cccCCCCCCCcccEEEECcee------CcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV------GDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~---Gl~~~~~~~p~~G~I~i~G~~------~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++++++|+||||||||||+++|+ |+.. |+.|+|.++|.. ..+++++|+..+++ ..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP---DHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 47999999999999999999999 9999 999999887642 23455677766554 4688888754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=113.19 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=27.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc--ccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~G--l~~ 128 (397)
-|++|++++|+||||||||||++.|++ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 578999999999999999999999999 565
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-13 Score=134.40 Aligned_cols=114 Identities=11% Similarity=-0.040 Sum_probs=76.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCC------
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD------ 174 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~------ 174 (397)
.++.+++|+||||||||||++.|.+++. +. | .....+.+|+|+..++. .+..+|+.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-----~~-g-----~~~~~~~iv~~D~f~~~----~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-----EK-Y-----GGEKSIGYASIDDFYLT----HEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HH-H-----GGGSCEEEEEGGGGBCC----HHHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-----hc-C-----CCCceEEEeccccccCC----hHHHHHHhccccccchh
Confidence 4578999999999999999999999998 53 2 01234556699987664 57888876531
Q ss_pred ----CChhhHHHHHHHHHHHCCCc------c---cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 175 ----DASDNINMIKLWIMEGVRHG------E---LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 175 ----~~~~~~~~~~~~ll~~vgl~------~---~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+.........+.++.+..+ . ...+...+||||+||+++|++.+.+|+|||+|||
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~ 161 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGW 161 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEES
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCc
Confidence 01111123344555555432 1 1233456799999999998444449999966665
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-15 Score=142.35 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=82.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCC-CCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEY-TIPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~-~l~~~~ 161 (397)
++++++++++| ++|+||||||||||+|+|+|... + |.|.++|. .+.++++||.. ...+
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p-- 104 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP-- 104 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS--
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC--
Confidence 88899999999 99999999999999999999988 6 78888885 13577888874 3333
Q ss_pred CCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 162 NSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 162 ~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+++.|++.......... ... .. ......+.++||||+||+.|++|+.++|++| ||+
T Consensus 105 -~i~~~Deid~~~~~r~~~--~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 -CVIFFDEVDALCPRRSDR--ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp -EEEEEETCTTTCC-----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred -CeEeeehhhhhhcccCCC--cch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 467778776543211110 000 01 1122335567999999999999999999986 555
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-13 Score=130.92 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=66.3
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Ccee---------CcEEEEecCCCCCCCC-CCc
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV---------GDGTYFLQEYTIPRGS-NSF 164 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~~---------~~ig~v~Q~~~l~~~~-~~l 164 (397)
+++.+|++++|+||||||||||+|+|+|+.+ |..|+|.+ +|+. ..+||++|.|.+.... .++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccC
Confidence 6678999999999999999999999999999 99999998 6651 1279999998765321 246
Q ss_pred cHHHHHh--cCC-------------CChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHH
Q 015952 165 SLYDTRS--LSD-------------DASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRM 210 (397)
Q Consensus 165 tv~eni~--~~~-------------~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQR 210 (397)
++ +++. |+. ....+....+.++++.+++.. ....+..++.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 88 8873 320 011233456788999999954 444556677788774
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-13 Score=137.66 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-------CcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-------GDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-------~~ig~v~Q~~~l~~~~~~lt 165 (397)
++++++.+++|+.++|+||||||||||+|+|+|+++ |++|.|.+.|.. ..++++.|...... ..+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~E~~~~~~~~v~~~~r~~~~~~---~~~ 321 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEG---EID 321 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSC---CBC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcccccCCCCCeEEEEeecccccC---CcC
Confidence 778999999999999999999999999999999999 999999998862 34566666543111 345
Q ss_pred HHHHHh
Q 015952 166 LYDTRS 171 (397)
Q Consensus 166 v~eni~ 171 (397)
+.+++.
T Consensus 322 ~~~~l~ 327 (511)
T 2oap_1 322 MYDLLR 327 (511)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-11 Score=126.61 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=45.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~ 65 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNT 65 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCT
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCE
Confidence 9999999999 9999999999999999999999999 99999999996
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-13 Score=129.42 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=69.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEE-------------------cCCcEEEEECCCCCcHHHHHHHHHcccCCC
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEND 130 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I-------------------~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~ 130 (397)
.+|+++||++.|. ++ ++++|+.+ ++|+++||+||||||||||+++|+|++..
T Consensus 36 ~~i~~~~v~~~y~---~~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~- 106 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PL-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR- 106 (308)
T ss_dssp TTCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-
T ss_pred cccchHhHHHHHH---HH-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-
Confidence 4689999999993 24 89999988 99999999999999999999999998751
Q ss_pred CCCCcccEEEE---Ccee------CcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 131 KFASERAQVTY---NSSV------GDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 131 ~~~p~~G~I~i---~G~~------~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
.|++|+|.+ +|.. ..+|++ |.+.++. .+++.+++.+
T Consensus 107 --~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~---~~~~~~~~~~ 151 (308)
T 1sq5_A 107 --WPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPE---SYDMHRLVKF 151 (308)
T ss_dssp --STTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGG---GBCHHHHHHH
T ss_pred --CCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCC---CccHHHHHHH
Confidence 168899999 8752 235666 6665544 4677776644
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-12 Score=114.43 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=65.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCC--------CCCcccEEEECceeCcEEEEecC-----------CCCCCCC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDK--------FASERAQVTYNSSVGDGTYFLQE-----------YTIPRGS 161 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~--------~~p~~G~I~i~G~~~~ig~v~Q~-----------~~l~~~~ 161 (397)
++|++++|+||||||||||+|+|+|+++... -.|..|+ ++|. .|.+++ ..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~----~~~~~~~~~~~~~i~~~~~l~~-- 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGK----DYYFVTREMMQRDIAAGDFIEH-- 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTT----TBEECCHHHHHHHHHHTCEEEE--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCc----eEEEccHHHHHHHHHcCCCEee--
Confidence 5799999999999999999999999874100 0145565 3442 233322 22221
Q ss_pred CCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhc
Q 015952 162 NSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 241 (397)
Q Consensus 162 ~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s 241 (397)
.++.+|+ ++. .. +.+.++++.-...... .. -.|-++... + -..|.++++|+|...+|||+| +
T Consensus 74 --~~~~~n~-~g~-~~----~~i~~~~~~~~~~~~~---~~-~~g~~~~~~--~--~~~~~~~~l~~p~~~ilde~~--~ 135 (198)
T 1lvg_A 74 --AEFSGNL-YGT-SK----EAVRAVQAMNRICVLD---VD-LQGVRSIKK--T--DLCPIYIFVQPPSLDVLEQRL--R 135 (198)
T ss_dssp --EEETTEE-EEE-EH----HHHHHHHHTTCEEEEE---CC-HHHHHHHTT--S--SCCCEEEEEECSCHHHHHHHH--H
T ss_pred --eeecCcc-CCC-CH----HHHHHHHHcCCcEEEE---CC-HHHHHHHHh--c--CCCcEEEEEeCCCHHHHHHHH--H
Confidence 2444444 221 11 2233344432111110 01 122222211 1 236887888898788999999 8
Q ss_pred cccccchh
Q 015952 242 SMEGDSDV 249 (397)
Q Consensus 242 ~LD~~~~~ 249 (397)
++|..+.+
T Consensus 136 ~~d~~~e~ 143 (198)
T 1lvg_A 136 LRNTETEE 143 (198)
T ss_dssp HHTCSCHH
T ss_pred hcCCCCHH
Confidence 88877655
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.7e-14 Score=137.67 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=86.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCC-------cEEEEECCCCCcHHHHHHHHHccc----CCCCCCCcccEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVF----ENDKFASERAQV 139 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~G-------e~vaLvGpnGsGKSTLl~~I~Gl~----~~~~~~p~~G~I 139 (397)
+++.++++..|+. ..+ ++++++.+++| +.++|+||||||||||+++|+|.+ . +++|.+
T Consensus 18 ~lr~~~l~~~~g~-~~~-----~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-----~~sg~~ 86 (334)
T 1in4_A 18 FLRPKSLDEFIGQ-ENV-----KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-----VTSGPV 86 (334)
T ss_dssp TTSCSSGGGCCSC-HHH-----HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-----EEETTT
T ss_pred HcCCccHHHccCc-HHH-----HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE-----EEechH
Confidence 4556677777753 324 88899999876 899999999999999999999998 6 788888
Q ss_pred EECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--------hhhHHHHHHHHHHHCCCcccccCCC
Q 015952 140 TYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------SDNINMIKLWIMEGVRHGELVIRRS 201 (397)
Q Consensus 140 ~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------~~~~~~~~~~ll~~vgl~~~~~~~~ 201 (397)
..++. +..|+++.|.+.+.. ++.+++...... .......+...+..+++.....++.
T Consensus 87 ~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-----~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~ 161 (334)
T 1in4_A 87 LVKQGDMAAILTSLERGDVLFIDEIHRLNK-----AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG 161 (334)
T ss_dssp CCSHHHHHHHHHHCCTTCEEEEETGGGCCH-----HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG
T ss_pred hcCHHHHHHHHHHccCCCEEEEcchhhcCH-----HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc
Confidence 76653 346899999877653 677776432110 1112233444556666633556678
Q ss_pred CCChHHHHHHHHH
Q 015952 202 DSSSLRNRMRCKA 214 (397)
Q Consensus 202 ~lSGGqkQRvaIA 214 (397)
.+|+|++||++++
T Consensus 162 ~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 162 LLSSPLRSRFGII 174 (334)
T ss_dssp GSCHHHHTTCSEE
T ss_pred cCCHHHHHhcCce
Confidence 8999999998543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=115.46 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHH--HHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVN--RISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~--~I~Gl~~ 128 (397)
-|++|++++|+||||||||||++ ++.++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 68999999999999999999999 4467776
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.07 E-value=8.7e-11 Score=114.79 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=71.5
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
++++.++|++++|+|||||||||+++.|++++. +..|+|.+.+. + .++ ....
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~---------D--~~r----~~a~-------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAA---------D--TFR----AAAI-------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEE---------C--TTC----HHHH--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEcc---------c--ccc----HHHH--------
Confidence 566678899999999999999999999999999 88888887553 1 111 1111
Q ss_pred ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCeEeeccc
Q 015952 176 ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR---CKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRv---aIArAL~~~P~iLllDEP 229 (397)
+....+.+.+++... ...|+|+.|++ ++++|+..+|+++++|+|
T Consensus 149 ------eqL~~~~~~~gl~~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 149 ------EQLKIWGERVGATVI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp ------HHHHHHHHHHTCEEE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred ------HHHHHHHHHcCCcEE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 122334556666432 35689999999 999999999999966666
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-11 Score=115.11 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=32.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-ccCCCCCCCcccEEEECce--------eCcEEEEecCCC
Q 015952 105 SLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSS--------VGDGTYFLQEYT 156 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G-l~~~~~~~p~~G~I~i~G~--------~~~ig~v~Q~~~ 156 (397)
.+.|.||||+|||||+++|+| ++. |+.|.+.++|. ...+++++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC------------------CCEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeecccccccceeeeecccce
Confidence 389999999999999999999 888 99999998875 245667776643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-10 Score=102.33 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=30.4
Q ss_pred ccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 90 VGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 90 ~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+|+++ +|+.++|+||||||||||+++|++.+.
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446666 899999999999999999999999998
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-13 Score=126.40 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=78.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCC-CCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYT-IPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~-l~~~~ 161 (397)
++++++++++| ++|+||||||||||+++|++... .|.|.+++. ...++++||... ..+
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 133 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-- 133 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS--
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC--
Confidence 88899999999 89999999999999999999865 578888874 134677888753 222
Q ss_pred CCccHHHHH-hcCCCC-------hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 162 NSFSLYDTR-SLSDDA-------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 162 ~~ltv~eni-~~~~~~-------~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+++.|++ .++... ..+....+.+++ ..+||||+||+.+|+|+.++|++|
T Consensus 134 -~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 134 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp -EEEEEETHHHHHCC--------CHHHHHHHHHHH------------HHHTTCCTTCCEEEEEEESCTTSS
T ss_pred -cEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------HHHhCCCCCCCEEEEEecCCchhC
Confidence 46778887 343221 112222333332 246899999999999999999885
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-10 Score=110.73 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCCChHHHHHH------HHHHHHcCC-CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 200 RSDSSSLRNRMR------CKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 200 ~~~lSGGqkQRv------aIArAL~~~-P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
+..+||||+||+ ++||||+.+ |++| +||||| ++||..... ...+.+.++ ..+.
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~l--------llDEp~--~~LD~~~~~--~l~~~l~~~--------~~~~ 337 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECI--------ILDEPT--VYLDENRRA--KLAEIFRKV--------KSIP 337 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHC--------CSCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE--------EEeCCC--CcCCHHHHH--HHHHHHHHh--------ccCC
Confidence 457899999988 667999999 9999 555555 667644332 233333332 2346
Q ss_pred eEEEEech-hHHccccEEEEEee
Q 015952 273 PVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 273 TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
+||++||+ .+..+||+++ +|+
T Consensus 338 ~vi~~th~~~~~~~~d~~~-~l~ 359 (371)
T 3auy_A 338 QMIIITHHRELEDVADVII-NVK 359 (371)
T ss_dssp EEEEEESCGGGGGGCSEEE-EEE
T ss_pred eEEEEEChHHHHhhCCEEE-EEE
Confidence 89999995 6789999995 565
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-10 Score=102.20 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.3
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56678899999999999999999999999998 7666
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-13 Score=124.57 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=78.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCC-CCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYT-IPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~-l~~~~ 161 (397)
++++++++++| ++|+||||||||||+++|++... .|.+.++|. ...++++||... ..+
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 109 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-- 109 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS--
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC--
Confidence 88899999999 99999999999999999999765 578888874 134667888753 222
Q ss_pred CCccHHHHH-hcCCCC-------hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 162 NSFSLYDTR-SLSDDA-------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 162 ~~ltv~eni-~~~~~~-------~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+++.|++ .++... ..+..+.+.+++ ..+||||+||+.+|+|+.++|++|
T Consensus 110 -~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 110 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp -EEEEEETHHHHHC---------CHHHHHHHHHHH------------HHHHTCCTTCCEEEEEEESCGGGS
T ss_pred -eEEEehhhhhhhcccCccccccchHHHHHHHHHH------------HHHhCCCCCCCEEEEEccCCchhC
Confidence 46777777 443221 112222333333 245899999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-11 Score=108.98 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=45.7
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+. ...++|+||++..+. .+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 68 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ---AMVK 68 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHH---HHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHH---HHHh
Confidence 57788999999999999999999999999964 2344432 345789999876655 4566
Q ss_pred HHHHhc
Q 015952 167 YDTRSL 172 (397)
Q Consensus 167 ~eni~~ 172 (397)
.+++..
T Consensus 69 ~~~~~~ 74 (205)
T 3tr0_A 69 EGAFLE 74 (205)
T ss_dssp HTCEEE
T ss_pred cCcEEe
Confidence 665543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=106.69 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.1
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHH-HHHcccC
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVN-RISKVFE 128 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~-~I~Gl~~ 128 (397)
|+.+ .--+++|++++|+||||||||||+. ++.++.+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6666 6678999999999999999999955 4455555
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-11 Score=124.94 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=98.0
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHc--ccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCc--cHHHHH
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF--SLYDTR 170 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G--l~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~l--tv~eni 170 (397)
-+++++.++..++|.|++||||||++|+|.. ++. ++.|++.+.+..-+. .-|+.+...+ ++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK~-~el~~~~~lP---hl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPKM-LELSVYEGIP---HLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCSS-SGGGGGTTCT---TBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCch-hhhhhhccCC---cccceeecCH
Confidence 3789999999999999999999999999876 556 666777765542221 1234333211 22 222222
Q ss_pred hcCCC----ChhhHHHHHHHHHHHCCCccccc----CCCCCChHHHHHH----------HHHHHHcCCCC-eEeeccccc
Q 015952 171 SLSDD----ASDNINMIKLWIMEGVRHGELVI----RRSDSSSLRNRMR----------CKAHKIGCEPS-VIRKVNFVI 231 (397)
Q Consensus 171 ~~~~~----~~~~~~~~~~~ll~~vgl~~~~~----~~~~lSGGqkQRv----------aIArAL~~~P~-iLllDEP~~ 231 (397)
..... ...+.+++. +++..+|...... ....+|+||+|+. ++|+++...|. ++
T Consensus 230 ~~a~~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl------- 301 (512)
T 2ius_A 230 KDAANALRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV------- 301 (512)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEE-------
Confidence 11111 233444554 6788888743321 1234688988753 46777888898 67
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---------hHHccccEEEE
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---------DLLSLTDRARI 291 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---------~~~~~aDrI~v 291 (397)
++||++ ..++.... ...+.+.++.. ....-|.++|++||+ ....+.+||++
T Consensus 302 -vIDE~~--~ll~~~~~---~~~~~l~~Lar---~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 302 -LVDEFA--DLMMTVGK---KVEELIARLAQ---KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp -EEETHH--HHHHHHHH---HHHHHHHHHHH---HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred -EEeCHH--HHHhhhhH---HHHHHHHHHHH---HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 556655 33331111 12233333210 112359999999994 23567788843
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-10 Score=107.11 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-cccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~~ 128 (397)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 78899999999999999999999999999999 9984
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.8e-11 Score=111.89 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=41.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.|+++|+...|+ - +++|.+ ++++|+||||||||||+++|+|++. |++|+|.++|.
T Consensus 9 ~l~l~~~~~~~~----------~---~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R---TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEE----------E---EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC-----
T ss_pred EEEEEeeecccC----------C---EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCE
Confidence 577888765552 1 455566 8999999999999999999999999 99999999885
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-11 Score=121.05 Aligned_cols=156 Identities=9% Similarity=-0.025 Sum_probs=90.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc------------ccCCCCCCCcccEEEECcee-----------Cc---EEEEe
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISK------------VFENDKFASERAQVTYNSSV-----------GD---GTYFL 152 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~G------------l~~~~~~~p~~G~I~i~G~~-----------~~---ig~v~ 152 (397)
.+++|..++|||+||||||||+|+|+| ... |+.|.|.+.|.+ +. ..++.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-----p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lv 90 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID-----PEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVF 90 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-----TTEEEEEECCHHHHHHHHHHCCSEEECEEEEEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec-----ceeeeeeeCCcchhhhhhhcccccccCcceEEE
Confidence 457899999999999999999999999 444 899999998731 12 23555
Q ss_pred cCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cc----c-ccCCCCCChHHHHHHHHHHHHcCCC--CeE
Q 015952 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GE----L-VIRRSDSSSLRNRMRCKAHKIGCEP--SVI 224 (397)
Q Consensus 153 Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~----~-~~~~~~lSGGqkQRvaIArAL~~~P--~iL 224 (397)
+.+.+.. ..+..+++. ......+..+.. -+ . ......+||+. +| +++
T Consensus 91 D~pGl~~---~~s~~e~L~----------~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 91 DIAGLTK---GASTGVGLG----------NAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CTGGGCC---CCCSSSSSC----------HHHHHHHTTCSEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ecccccc---CCcHHHHHH----------HHHHHHHHHHHHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 6655543 233322220 001111111111 00 0 11122235542 88 888
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEeeCC-EEeee
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLG-ELLGI 301 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~~G-~iv~~ 301 (397)
++|||+ ...|..... .....+.... .+.|.|++ +| ..+..+||++.-.|++| +++..
T Consensus 146 --------ildeel--~~~D~~~~~--k~~~~l~~~~------~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 146 --------IIVDEL--LIKDAEFVE--KHLEGLRKIT------SRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp --------HHHHHH--HHHHHHHHH--HHHHHHHHTT------CCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGG
T ss_pred --------hchhhh--HHHHHHHHH--HHHHHHHHHH------HhcCCccc--cccHHHHHHHHHHHHHHhccCCceeec
Confidence 777777 445532221 1222332220 23577764 99 38889999993159999 88766
Q ss_pred CCc
Q 015952 302 PPA 304 (397)
Q Consensus 302 g~~ 304 (397)
++.
T Consensus 206 ~~~ 208 (392)
T 1ni3_A 206 GDW 208 (392)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-09 Score=100.96 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=75.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
+.++++++.|+.. -++++|+ +|++++++|+|||||||+++.|++++. +..|+|.+.+..
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d------ 135 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAAD------ 135 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECC------
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCC------
Confidence 4567788888421 2457887 899999999999999999999999999 888888876531
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+.. ....+ ....+.+..++...... ...+-.+.+|.+|+++...+++++|+|+|
T Consensus 136 -----~~~---~~~~~---------------ql~~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 136 -----TQR---PAARE---------------QLRLLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTA 189 (295)
T ss_dssp -----SSC---HHHHH---------------HHHHHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred -----ccc---HhHHH---------------HHHHhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 111 01111 01112344455332111 12344566899999999899999966666
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=98.72 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=81.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
.+|++++++|||||||||+++.|++.+. +++| .++.++.+++. . .+..+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G--------~~V~lv~~D~~--r----~~a~eqL~~-------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKH--------KKIAFITTDTY--R----IAAVEQLKT-------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTC--------CCEEEEECCCS--S----TTHHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcC--------CEEEEEecCcc--c----chHHHHHHH--------
Confidence 4799999999999999999999999998 7777 24666766652 2 233333321
Q ss_pred HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 181 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
..+..++.... ..+ +..-+.+|++ +.+|+++|+|.| ++|.... ..+..+.++
T Consensus 156 ------~~~~~gl~~~~----~~~-~~~l~~al~~--~~~~dlvIiDT~------------G~~~~~~---~~~~el~~~ 207 (296)
T 2px0_A 156 ------YAELLQAPLEV----CYT-KEEFQQAKEL--FSEYDHVFVDTA------------GRNFKDP---QYIDELKET 207 (296)
T ss_dssp ------HHTTTTCCCCB----CSS-HHHHHHHHHH--GGGSSEEEEECC------------CCCTTSH---HHHHHHHHH
T ss_pred ------HHHhcCCCeEe----cCC-HHHHHHHHHH--hcCCCEEEEeCC------------CCChhhH---HHHHHHHHH
Confidence 22233442111 112 3445666665 489999955544 3343222 123333333
Q ss_pred cCCCcccccCCceEEE-Eech--hHHccccEEEEEeeCCEEee
Q 015952 261 FNCPYLSFRDDKPVVV-VTHG--DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIi-vTH~--~~~~~aDrI~v~l~~G~iv~ 300 (397)
+.. ....+.++++ .||+ ++.+.++++. .+..+.++.
T Consensus 208 l~~---~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVl 246 (296)
T 2px0_A 208 IPF---ESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIF 246 (296)
T ss_dssp SCC---CTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEE
T ss_pred Hhh---cCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEE
Confidence 210 0122334444 3883 7778888774 466666665
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=104.79 Aligned_cols=166 Identities=10% Similarity=0.077 Sum_probs=95.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEEECceeCcEEEEecCCCCCCCCCCccHHHH--
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT-- 169 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~en-- 169 (397)
|+++..-+++|+++.|.|++|+|||||+..+++... +..| .|. |+.-+-.. -.+...
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl---------~~s~E~s~------~~l~~r~~ 252 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVA---------IFSLEMSA------QQLVMRML 252 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEE---------EEESSSCH------HHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEE---------EEECCCCH------HHHHHHHH
Confidence 888888899999999999999999999999999776 5444 333 33222100 011111
Q ss_pred ----------HhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHc--CCCCeEeeccccccccch
Q 015952 170 ----------RSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIG--CEPSVIRKVNFVIFVVDG 236 (397)
Q Consensus 170 ----------i~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~--~~P~iLllDEP~~siLDE 236 (397)
+..+... .....++.++++.++... .......+|.++.+ +.||+++ .+|+++++ |+
T Consensus 253 ~~~~~~~~~~l~~g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livI--------D~ 321 (454)
T 2r6a_A 253 CAEGNINAQNLRTGKLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVI--------DY 321 (454)
T ss_dssp HHHHTCCHHHHHTSCCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEE--------EC
T ss_pred HHHcCCCHHHHhcCCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEE--------cc
Confidence 1111111 122234444555554322 23345678999877 5566666 68999955 55
Q ss_pred hhhhcccccc----ch--hhhHHHHHHHHhcCCCcccccCCceEEEEec---------h------------hHHccccEE
Q 015952 237 LAVLKSMEGD----SD--VEKQYNQIVATTFNCPYLSFRDDKPVVVVTH---------G------------DLLSLTDRA 289 (397)
Q Consensus 237 pT~~s~LD~~----~~--~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH---------~------------~~~~~aDrI 289 (397)
++. ..... .+ +.....+.+..+ .++.|.+||+++| + .+...||.|
T Consensus 322 l~~--~~~~~~~~~~~~~~i~~i~~~Lk~l------Ake~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 322 LQL--IQGSGRSKENRQQEVSEISRSLKAL------ARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp GGG--SCCSCC----CHHHHHHHHHHHHHH------HHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred HHH--hccCCCCCCCHHHHHHHHHHHHHHH------HHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 442 22111 11 111122223222 1246899999999 1 356779999
Q ss_pred EEEeeCCEE
Q 015952 290 RIRTYLGEL 298 (397)
Q Consensus 290 ~v~l~~G~i 298 (397)
++|+.++.
T Consensus 394 -i~l~r~~~ 401 (454)
T 2r6a_A 394 -AFLYRDDY 401 (454)
T ss_dssp -EEEEETTC
T ss_pred -EEEecccc
Confidence 56876654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-10 Score=105.73 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=35.7
Q ss_pred CeEEEEeE-EEEECCCceEeeccCceeeeEEEcC---CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 70 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 70 ~~lel~nv-s~~Y~~~~~v~~~~~L~~isl~I~~---Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++++|+ +|+|+.+..+ |+++||+|++ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~-----l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQI-----LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHH-----HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcchh-----hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 58999999 9999333334 9999999999 99999999999999999999999665
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-09 Score=93.34 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=66.8
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE---------EECc-------eeCcEEEEecCCCC
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TYNS-------SVGDGTYFLQEYTI 157 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I---------~i~G-------~~~~ig~v~Q~~~l 157 (397)
+++++++.+| +++|+||||||||||+++|.+++. +..|.. ...| ....|.++||++.-
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~ 91 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-----GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-----CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-----CCcccccccccchheeecccccCCCCceEEEEEEEeCCCc
Confidence 7799999999 999999999999999999999988 555432 2222 12468999998642
Q ss_pred CC--CCCCccHHHHHhcC------CCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHH
Q 015952 158 PR--GSNSFSLYDTRSLS------DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 158 ~~--~~~~ltv~eni~~~------~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRva 212 (397)
.. ....+++...+.-. ..........+.+++..+++.... +.-++.||.|+++
T Consensus 92 ~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~--~~~~~qg~~~~l~ 152 (182)
T 3kta_A 92 GFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG--YNIVLQGDITKFI 152 (182)
T ss_dssp CSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC--TTEECTTCTTHHH
T ss_pred ccccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC--CEEEEcccHHHHH
Confidence 10 00013333222110 001111235567788888884321 2224666665553
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-10 Score=120.37 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=79.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc-cEEEECce-----eCcEEEEecCC-----------
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSS-----VGDGTYFLQEY----------- 155 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~-G~I~i~G~-----~~~ig~v~Q~~----------- 155 (397)
++++++.+.+|+.++|+||||||||||+++|++++. +.. |.+.+.+. ...++++++..
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 888999999999999999999999999999999998 776 77777665 23577776542
Q ss_pred --------CCCCCCCCccHHHHHhcCCCCh---hhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 156 --------TIPRGSNSFSLYDTRSLSDDAS---DNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 156 --------~l~~~~~~ltv~eni~~~~~~~---~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
........+++.+|+....... ...........+.+|. .........+|+|++|++..++....++.+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gv 204 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGV 204 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSE
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCE
Confidence 0000001234444443321100 0000000011122232 112222356799999999999999999999
Q ss_pred Eeeccc
Q 015952 224 IRKVNF 229 (397)
Q Consensus 224 LllDEP 229 (397)
|++||.
T Consensus 205 L~LDEi 210 (604)
T 3k1j_A 205 LFIDEI 210 (604)
T ss_dssp EEETTG
T ss_pred EEEech
Confidence 955555
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-10 Score=116.91 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE-Cce----eCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY-NSS----VGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i-~G~----~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
|+++|+.+++|++++|+||||||||||+++|+|.. +|.+.. ++. ...+|++||.+.++.. .++..
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~d--d~~~~ 228 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--------GGKALNVNLPLDRLNFELGVAIDQFLVVFE--DVKGT 228 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--------CCEEECCSSCTTTHHHHHGGGTTCSCEEET--TCCCS
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--------CCcEEEEeccchhHHHHHHHhcchhHHHHH--HHHHH
Confidence 89999999999999999999999999999999854 466665 322 1246777877532110 11111
Q ss_pred HHHhcCCCChhh--HHHHHHHHHHHC---C------------C--cccccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 168 DTRSLSDDASDN--INMIKLWIMEGV---R------------H--GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 168 eni~~~~~~~~~--~~~~~~~ll~~v---g------------l--~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
.++.-....... ....+...++.. . + +........+++|++||++.+.+++..|++++
T Consensus 229 ~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli--- 305 (377)
T 1svm_A 229 GGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH--- 305 (377)
T ss_dssp TTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH---
T ss_pred HHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE---
Confidence 110000000000 012223344311 0 1 11223345569999999998888899999882
Q ss_pred ccccccchhh
Q 015952 229 FVIFVVDGLA 238 (397)
Q Consensus 229 P~~siLDEpT 238 (397)
.||+|+
T Consensus 306 ----yLd~~~ 311 (377)
T 1svm_A 306 ----CLERSE 311 (377)
T ss_dssp ----HHHTCT
T ss_pred ----EEeCCH
Confidence 266666
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-09 Score=95.46 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=33.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCC------cccEEEECcee
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSV 145 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p------~~G~I~i~G~~ 145 (397)
.++|+|+||||||||++.++|...+....| ++|+|.++|..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 689999999999999999999887322223 57899999863
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-08 Score=100.07 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888876554
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.9e-08 Score=87.09 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.4
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999999999999997
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.7e-09 Score=93.63 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.1
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.++-++|++++|+||||||||||+++|++.+ |.+.++|.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEccc
Confidence 4566889999999999999999999999875 55777764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-08 Score=95.62 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=43.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHH---cccCCCCCCCcccEEE--------ECce-----------eCcEEEEecCC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSS-----------VGDGTYFLQEY 155 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~---Gl~~~~~~~p~~G~I~--------i~G~-----------~~~ig~v~Q~~ 155 (397)
++|++++|+|||||||||++++|+ |+.. +++|.+. .+|. ...++++||..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 9999 9999998 6665 24678888764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-08 Score=92.07 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=41.8
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE--EECce
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSS 144 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I--~i~G~ 144 (397)
+|++..++. +.. .+..++..++|++++|+||||||||||+++|++.+. ..|.+ .++|.
T Consensus 3 ~~~~~~~~~---~~~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d 62 (200)
T 3uie_A 3 TNIKWHECS---VEK---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGD 62 (200)
T ss_dssp -------CC---CCH---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred CCCcccccc---cCH---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCc
Confidence 456665532 222 777888889999999999999999999999999886 45777 77764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-09 Score=111.01 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=78.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------CcEEEEecCCC-CCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------GDGTYFLQEYT-IPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------~~ig~v~Q~~~-l~~~~ 161 (397)
++++++.+++| +.|+||||||||||+++|++... .+.+.++|.. ..+..+||... ..+
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p-- 124 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-- 124 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSS--
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCC--
Confidence 67788889999 89999999999999999999764 4678887741 23566787753 222
Q ss_pred CCccHHHHHh-cCCCC-------hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 162 NSFSLYDTRS-LSDDA-------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 162 ~~ltv~eni~-~~~~~-------~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
...+.|++. ++... .++..+.+.+++. .+|||++|+..|++|..++|++ +|++
T Consensus 125 -~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 125 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp -CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred -CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 467777773 33221 2233334444443 2578888999999999999987 5777
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.6e-08 Score=86.59 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++||||++++|++++|+||+||||||+.+.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998664
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=86.97 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc--ccCCCCCCCcccEEEE
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTY 141 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G--l~~~~~~~p~~G~I~i 141 (397)
|++++++++ .++|||++|||||||+|.|.| +++ +.+|.++-
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~ 69 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTR 69 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccC
Confidence 899999998 899999999999999999999 666 66666543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-07 Score=84.48 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|++++|+||||||||||+++|+++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999886
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-07 Score=93.18 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=42.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++||++++|++++|+|||||||||++..|++++. +..|+|.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~ 141 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAA 141 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeC
Confidence 367999999999999999999999999999999999 88999988654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-07 Score=94.34 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=31.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I 139 (397)
-+++|+++.|.||+|||||||+..+++... +..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeE
Confidence 478999999999999999999999999887 665554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-07 Score=82.42 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
..++|++++|+|+||||||||+++|++++. +..|.|.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~ 57 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFH 57 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEec
Confidence 357899999999999999999999999998 8888887654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=87.52 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=62.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCC------CCCcccEEEECcee----CcEEEEecCCCCCCCCCCccHHHHHh---
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDK------FASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYDTRS--- 171 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~------~~p~~G~I~i~G~~----~~ig~v~Q~~~l~~~~~~ltv~eni~--- 171 (397)
+++|+|++|||||||+|.++|...... ..++.|.|.++|.. ...|++.|.+.-.-..+ .+.++.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhCC
Confidence 499999999999999999999764100 01567999998852 12233333211000000 01122221
Q ss_pred ---cCCC---Ch---hhHHHHHHHHHHHCCCccc-----ccCCCCCChHHHHHHHHH----HHH-cCCCCeE
Q 015952 172 ---LSDD---AS---DNINMIKLWIMEGVRHGEL-----VIRRSDSSSLRNRMRCKA----HKI-GCEPSVI 224 (397)
Q Consensus 172 ---~~~~---~~---~~~~~~~~~ll~~vgl~~~-----~~~~~~lSGGqkQRvaIA----rAL-~~~P~iL 224 (397)
+... .. .+....+.++++.+++... .++...+|++++||+.++ +++ ..+|+++
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence 1111 11 1122334567777765322 244444588899988877 666 5455543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-06 Score=80.35 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999999999987
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.5e-07 Score=89.02 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=33.4
Q ss_pred ceeeeEEEcCCc------EEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge------~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|++++..|.+++ ++||+||||||||||+++|++++.
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 888888888877 999999999999999999999987
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.08 E-value=9e-07 Score=92.91 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=36.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEE-ECce
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSS 144 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~-i~G~ 144 (397)
.+++|++++|+|+||||||||+++|+|++. |++| ++. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCc
Confidence 578999999999999999999999999999 8887 674 7774
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-06 Score=80.93 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.9
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~ 52 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTE 52 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEec
Confidence 34588999999999999999999999996 366777654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.2e-06 Score=83.51 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=68.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+.+.--+.+|+++.|.|++|+|||||+..++.-.. ...+. +.|+.=+ +
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~---------Vl~fSlE---------m-------- 84 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL-----NDDRG---------VAVFSLE---------M-------- 84 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH-----HTTCE---------EEEEESS---------S--------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCe---------EEEEeCC---------C--------
Confidence 666666789999999999999999999998887655 32222 3332211 1
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+.++...+.......+.+.... -..+|.++.||++.|...+.++++.+.|+|
T Consensus 85 ---s~~ql~~Rlls~~~~v~~~~l~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~ 136 (338)
T 4a1f_A 85 ---SAEQLALRALSDLTSINMHDLE--SGRLDDDQWENLAKCFDHLSQKKLFFYDKS 136 (338)
T ss_dssp ---CHHHHHHHHHHHHHCCCHHHHH--HTCCCHHHHHHHHHHHHHHHHSCEEEECCT
T ss_pred ---CHHHHHHHHHHHhhCCCHHHHh--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCC
Confidence 2233334444444444443332 247899999999999999999999955555
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-06 Score=86.10 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=28.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 45566667777 88999999999999999998654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.2e-06 Score=76.28 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=35.5
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 158 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~ 158 (397)
=++++|.+++|+|++||||||+++.|++.+. .+.++.|+..++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFK 58 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCcccc
Confidence 3568899999999999999999999999764 257777776554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-06 Score=77.49 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.9
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.4e-06 Score=74.60 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCC------cccEEEECcee
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSV 145 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p------~~G~I~i~G~~ 145 (397)
.++|+|+||||||||++.++|........| ..|.|.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999853222123 36889998863
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.2e-05 Score=87.65 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=25.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..|+.+.|+||+||||||++.++.+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999999977655
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-06 Score=72.98 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999877
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.9e-06 Score=73.52 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+|++++|+|||||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.2e-06 Score=70.87 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44456666665 99999999999999999997443
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-06 Score=87.13 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=47.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCce--------------eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~--------------~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-++++|+++.|+..... |+ |+++.|.+|+.++|+||+|||||||++.|++...
T Consensus 132 ~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 357899999999765534 88 8999999999999999999999999999999764
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.8e-06 Score=88.89 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=41.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++++++ +|+.++|+||||||||||+++|++++. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 77788888 899999999999999999999999998 88899988774
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.9e-06 Score=72.82 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc--EEEECce
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS 144 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G--~I~i~G~ 144 (397)
++|++++|+|++||||||++++|++.+. + .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECCh
Confidence 4689999999999999999999999887 5 56 5666653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.84 E-value=2.4e-06 Score=84.05 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=49.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
+++.+++.+.|+. ..+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..|+|.+-+
T Consensus 30 ~ie~~~~~~~~~~-~~~-----~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~ 91 (341)
T 2p67_A 30 LVESRHPRHQALS-TQL-----LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIA 91 (341)
T ss_dssp HHHCCCHHHHHHH-HHH-----HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred HhhcCCchhhhHH-HHH-----HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 3455556566632 223 888999999999999999999999999999999998 7777776644
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6e-05 Score=74.12 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999998874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-06 Score=77.04 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=29.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc---CCCCCCCcccEEEE
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF---ENDKFASERAQVTY 141 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~---~~~~~~p~~G~I~i 141 (397)
+.+++|+|||||||||++++|++.+ . ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 5689999999999999999999876 5 77888776
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-07 Score=92.58 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=33.6
Q ss_pred ceeeeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 7788899999998 99999999999999999999876
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.2e-06 Score=79.37 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=64.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+.+.--+++|+++.|.|++|+|||||+..++.-.- - .| ..+.|+.=+ ++
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-----~-~g--------~~vl~~slE---------~s------- 107 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-----D-ND--------DVVNLHSLE---------MG------- 107 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-----T-TT--------CEEEEEESS---------SC-------
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----H-cC--------CeEEEEECC---------CC-------
Confidence 777776799999999999999999999888875332 1 12 123343211 11
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.++...+.......+.+.........+|.+++||++.|...+.++++.+.|+|
T Consensus 108 ----~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~ 160 (315)
T 3bh0_A 108 ----KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKA 160 (315)
T ss_dssp ----HHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCS
T ss_pred ----HHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCC
Confidence 22222333333333333222111112799999999999999888899855544
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00017 Score=70.22 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999999887
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.80 E-value=9.9e-06 Score=75.27 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=31.2
Q ss_pred ceeeeEEEc---CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 93 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 93 L~~isl~I~---~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
|.++|+++. +|.+++|.|++||||||+++.|+..+. + .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCce
Confidence 788888887 899999999999999999999999998 6 55554
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.4e-05 Score=78.91 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..-.++++|++|+|||||+|.++|...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.6e-06 Score=80.13 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=34.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+++.+++|+|++|||||||+|.|.|.+. +..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEee
Confidence 4578999999999999999999999998 88888877554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=9.1e-06 Score=73.79 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=37.2
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc--EEEECce
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS 144 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G--~I~i~G~ 144 (397)
+.+++|.+++|+|++||||||+.+.|++.+. |..| .+.+++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECCh
Confidence 4568899999999999999999999999998 8888 7888763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7.7e-05 Score=72.60 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999988764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.1e-05 Score=70.48 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+.+.++++.+| +++|+|||||||||++.+|.-++
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 44566677765 99999999999999999986433
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=2.2e-06 Score=85.14 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=42.0
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--C-
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--G- 146 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--~- 146 (397)
..+.++|+++.|+. ..+ +++++|+| +|+|++|+|||||++.|.|... +..+.+...+.. .
T Consensus 16 ~~v~~~~l~~~~~~-k~~-----~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~-----~~~~~~~~~~~~~~~t 78 (361)
T 2qag_A 16 GYVGFANLPNQVHR-KSV-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDL-----YPERVIPGAAEKIERT 78 (361)
T ss_dssp -----CCHHHHHHT-HHH-----HHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------------------C
T ss_pred ceEEeccchHHhCC-eee-----cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC-----CCCCcccCCCcccCCc
Confidence 46888999888853 323 78888876 9999999999999999988755 444444332221 1
Q ss_pred ----cEEEEecCCCCCCCCCCccHHHHHhcC
Q 015952 147 ----DGTYFLQEYTIPRGSNSFSLYDTRSLS 173 (397)
Q Consensus 147 ----~ig~v~Q~~~l~~~~~~ltv~eni~~~ 173 (397)
..++.+|..... ..++++|+..++
T Consensus 79 i~~~~~~~~~~~~~~~---~~l~i~DTpG~g 106 (361)
T 2qag_A 79 VQIEASTVEIEERGVK---LRLTVVDTPGYG 106 (361)
T ss_dssp EEEEEEEEC----CEE---EEEEEEC-----
T ss_pred eeEEEEEEEeecCCcc---cceEEEEecccc
Confidence 123334432221 146888887774
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=1.3e-05 Score=71.83 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|+..+++ .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 88899998887 478999999999999999986
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00028 Score=71.89 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
++.+++++||+||||||++..|++.+. +..++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 578999999999999999999999999 7777776643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.4e-05 Score=83.83 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
|+++++|..++|+|++|||||||++.|.+..... +..|+| .+|. .+.+++.+|...++.....+++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nl 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFL 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEE
Confidence 4677899999999999999999999999876511 367777 4443 2356666665544331111222
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 167 YDTRSLSDDASDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 167 ~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
+|.- ........+...+...+..-. ..-...++...++.+..++. ..-|-++
T Consensus 79 iDTp-----G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~-~~ip~il 131 (665)
T 2dy1_A 79 LDAP-----GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER-LGLPRMV 131 (665)
T ss_dssp EECC-----CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEE
T ss_pred EeCC-----CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH-ccCCEEE
Confidence 2211 111222334455665554222 22223345555555555554 2445555
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.53 E-value=5.8e-05 Score=66.92 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++.++. .++++|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 88899998877 678999999999999999987
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.6e-05 Score=68.44 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=43.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 184 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~ 184 (397)
+++|+|||||||||+.++|+++-. ..+++- .+...+.. ... ...
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~----------~~id~d--------------------~~~~~~~~--~~~----~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGV----------PLVDAD--------------------VVAREVVA--KDS----PLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTC----------CEEEHH--------------------HHHHHTTC--SSC----HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC----------cccchH--------------------HHHHHHcc--CCh----HHH
Confidence 689999999999999999998321 233321 01111100 000 123
Q ss_pred HHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 185 LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 185 ~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.++.+.+|.... .+.|+.+|..+++.+..+|+.+
T Consensus 48 ~~i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 48 SKIVEHFGAQIL------TEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp HHHHHHHCTTCC------------CHHHHHHHHHTCHHHH
T ss_pred HHHHHHhCHHHh------ccCccccHHHHHHHHhCCHHHH
Confidence 344555554221 3788999999999988888765
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=3.1e-05 Score=78.75 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
.+++++.|+.. -++++|+ ++++++++|+|||||||++..|++++. +..|+|.+.+
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 34566777422 2457777 899999999999999999999999999 8888888755
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.9e-05 Score=76.70 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..+.|.||+|+|||||+++|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998775
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.49 E-value=8.2e-05 Score=64.93 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++|..++|+|++|+|||||+|.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.47 E-value=4.6e-05 Score=67.44 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=32.1
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
+...+|.++.|+|++||||||+.+.|++.+. +..+.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEE
Confidence 3446799999999999999999999999988 6666653
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00096 Score=63.08 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++..+.|.||+|+|||||++.+++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00012 Score=74.31 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCC---CC----CCCcccEEEECce
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFEN---DK----FASERAQVTYNSS 144 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~---~~----~~p~~G~I~i~G~ 144 (397)
.++|+|+||||||||+|.|.|.... +. -.+.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 7999999999999999999997530 00 0156789999886
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=5.7e-05 Score=67.06 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.6
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888899999999999999999999999875
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.44 E-value=5.4e-05 Score=68.24 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=26.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999988764
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00026 Score=68.60 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999886
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.41 E-value=2.2e-05 Score=75.96 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred EEeEEEEECCCceEeeccCcee-eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 74 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~-isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
.+++.+.|+.. .++ ++++.+ |++++++|++|+||||++..|++.+. +..|+|.+.+
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 45566667422 245 777766 99999999999999999999999998 7777777644
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00077 Score=68.39 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 666665699999999999999999999988877554
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.33 E-value=8.6e-05 Score=66.43 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=64.43 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.7
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+++.|.||+|||||||...++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988776543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00016 Score=63.06 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=73.18 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=33.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCCCcccEEEECce
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV-----------FENDKFASERAQVTYNSS 144 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl-----------~~~~~~~p~~G~I~i~G~ 144 (397)
.+..|..++|||++|+|||||+|+|+|. .. |..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~-----p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID-----PNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C-----CSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC-----ceeEEEEECCc
Confidence 4567888999999999999999999998 44 78898888764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.22 E-value=9.9e-05 Score=71.20 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++.+++|+|++|||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999964
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=70.95 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
+++..+++.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 66678888876 99999999999999999987
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00017 Score=63.34 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||++.+.|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999999754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00022 Score=63.64 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=23.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|+||||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999876
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00019 Score=64.17 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+++|+|++||||||+.+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=62.54 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=22.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00021 Score=66.37 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.0
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++.+++| +.|+||+|||||||+++|++...
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444555 88999999999999999999765
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00033 Score=60.22 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=8.7e-05 Score=73.73 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=33.0
Q ss_pred ceeeeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 7778889999998 99999999999999999999765
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=64.22 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=24.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999999743
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00044 Score=60.20 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00034 Score=65.40 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
..+++.++.|+|++||||||+.+.|+..+. . +.+.+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~--~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----G--NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----T--CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----C--CcEEEecH
Confidence 346678999999999999999999998765 2 44666663
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00018 Score=64.58 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998876
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00032 Score=65.64 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+++|.||+||||||+.+.|+..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999996543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=57.48 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
.++|+|++|||||||++.+.+-.......|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 588999999999999976655332222336655
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00053 Score=59.96 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00058 Score=62.79 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||+|.|.|-..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999999776
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00055 Score=58.48 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I 123 (397)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00057 Score=60.05 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00066 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0032 Score=61.73 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=22.3
Q ss_pred EcCCcEEEEECCCCCcHHHH-HHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSL-VNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTL-l~~I~Gl~~ 128 (397)
+++| ++.|.||+||||||| +.+++...+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889 899999999999999 455555443
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00068 Score=59.93 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998665
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00083 Score=58.85 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999999986543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00097 Score=59.17 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00085 Score=58.70 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++.++.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00082 Score=60.62 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+||||||||||++.|..-.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00093 Score=59.13 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999875
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0008 Score=64.48 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.2
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++..+.|.||+|||||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 346788899999999999999999998654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=57.60 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0008 Score=66.76 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.+..++|+||||||||||++.+.+... +..+.|.+-+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 566899999999999999999999888 77788877554
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00088 Score=62.80 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+||+|||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999987544
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=58.37 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999986543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=58.77 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998765
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=59.02 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=57.86 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=62.51 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||+|.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=58.70 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999986543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=64.47 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC--CC----CCCCcccEEEECce
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE--ND----KFASERAQVTYNSS 144 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~--~~----~~~p~~G~I~i~G~ 144 (397)
|-.++|||.+|+|||||+|.|.|-.. .+ -..|+.|.+.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 34689999999999999999998321 00 01277888888763
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0019 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=57.19 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=63.12 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
..+.++.|.|||||||||+.+.|+.-+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998644
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0027 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0028 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998744
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0025 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999988653
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=58.81 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999998876
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0025 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=62.03 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I 139 (397)
..+.|+||+|+||||++++|++... +..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5799999999999999999999987 665544
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=57.06 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||++.+.+-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.019 Score=57.04 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=24.4
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-+++|+++.|.||.|||||||+..++.-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0027 Score=61.95 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=29.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++..+++ .|.-++|+|+||+|||||...+.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 67788888 688999999999999999999877
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0046 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0033 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0032 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999987643
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0044 Score=55.47 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999887644
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0023 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCccHHHHHHHHhcCCC
Confidence 489999999999999999987543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0017 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0027 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0056 Score=53.42 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999988543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=54.48 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0052 Score=54.34 Aligned_cols=24 Identities=50% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.|-..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987544
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|||||||++.+.+-..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 478999999999999999987543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0014 Score=56.99 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999986554
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0027 Score=54.25 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.002 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999987544
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0026 Score=54.46 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++.-.++|+|++|||||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345578999999999999999998743
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=56.72 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=24.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.+.+++|+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577999999999999999999987543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=54.14 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0032 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998744
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0044 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0033 Score=54.53 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999998644
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0073 Score=51.72 Aligned_cols=24 Identities=50% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0019 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=57.55 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987554
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=60.87 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|||||||+|.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0039 Score=52.59 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0019 Score=56.43 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.002 Score=56.24 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
--.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=58.05 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=22.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++.+++|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.005 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998744
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0023 Score=55.14 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987543
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=56.18 Aligned_cols=27 Identities=19% Similarity=0.540 Sum_probs=22.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+..+++|.|++||||||+.+.|+.-+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998544
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0032 Score=56.10 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999986543
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0053 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998644
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0018 Score=59.42 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=36.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
+.+|+.+++.||+||||||++.++..-.. ...|. ...++++++.|.... ..++.+++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~-----~~~~~------~~~~~~l~~~p~~~l---a~q~~~~~~ 130 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF-----IQNDR------AAECNIVVTQPRRIS---AVSVAERVA 130 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH-----HHTTC------GGGCEEEEEESSHHH---HHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch-----hhcCC------CCceEEEEeccchHH---HHHHHHHHH
Confidence 35689999999999999998887754322 11121 234567777765322 235555553
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0023 Score=57.97 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999986544
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0023 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0071 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 488999999999999999987543
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999753
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.018 Score=67.38 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+++|+++.|.||+|+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 389999999999999999999999988665
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0039 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0032 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987443
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0095 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0028 Score=55.24 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999976443
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.005 Score=53.54 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|++|+|||||++.+.+-..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=53.46 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++++|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0035 Score=54.09 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987443
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0047 Score=53.86 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999975443
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0097 Score=52.54 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998644
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0036 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998765
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0063 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 478999999999999999986543
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0018 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=20.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0036 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998776
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 489999999999999999987443
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0048 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0049 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0032 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0058 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0029 Score=55.35 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0035 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998765
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0056 Score=53.30 Aligned_cols=24 Identities=46% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0056 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987543
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0032 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0058 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++|+|+.|+|||||++.+.+-..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 3589999999999999999988654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0035 Score=60.41 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|+|.+|+|||||+|.+.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=60.33 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|+|+.|+|||||+|.+.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999854
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=59.76 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||+|.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999987754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0058 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999987543
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=57.98 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987443
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0068 Score=52.11 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0073 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0065 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987543
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999988543
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0045 Score=57.97 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0052 Score=52.65 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999988764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.003 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997654
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=55.87 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.-+++|+|+.||||||+.+.++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999865
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.004 Score=53.99 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
+.-.++++|+.|+|||||++.+.+-. .....|+-|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~ 51 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG 51 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc
Confidence 34468999999999999999998754 222335544
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0049 Score=57.15 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=58.49 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||+|.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0024 Score=61.29 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987544
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0026 Score=56.94 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|++|+|||||+|.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=57.56 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|++|||||||++.|.|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=53.39 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.007 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999986443
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0077 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999988543
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0045 Score=54.77 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0051 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997644
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0096 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0099 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999887643
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0047 Score=58.73 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=61.62 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|||++|+|||||+|.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0048 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++|+|+.|||||||++.+++-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987644
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0045 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998744
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=53.88 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=24.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCC-CCCCccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFEND-KFASERA 137 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~-~~~p~~G 137 (397)
-.++|+|++|+|||||++.+.+-.... .+.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 368999999999999999998754422 2235545
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0045 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0055 Score=57.50 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||+|.+.|-..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 489999999999999999998543
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0052 Score=58.08 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|..|||||||+|.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0038 Score=54.52 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
=.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=53.53 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0043 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|++|+|||||++.+.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.012 Score=59.80 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
|+.+.--+++|+++.|.|++|+|||||+--++.-.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 55554458999999999999999999987776543
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0055 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0051 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0068 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0055 Score=54.05 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0047 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999873
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0062 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0061 Score=55.20 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|-++.|+|+.||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999976543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0057 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.016 Score=52.19 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0066 Score=56.76 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=24.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.-+.|.||+|+|||||++.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455689999999999999999998765
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0042 Score=59.59 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..+.|.||+|+|||||++.|++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 34688999999999999999999776
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0067 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999988765
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0066 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998643
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.53 E-value=0.009 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999987443
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0043 Score=63.67 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+ +.+-+|+..+|+||||+|||||++.|++-..
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4445 5677899999999999999999999987655
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0057 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0064 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0077 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+|-+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988776
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.007 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0088 Score=54.72 Aligned_cols=28 Identities=36% Similarity=0.704 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.++.|+|+.||||||+.+.|+.-+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999986544
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0066 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0062 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+-+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999987543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0067 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988554
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0077 Score=56.88 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++++|.+|+|||||+|.+.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998665
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0044 Score=53.44 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0075 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998644
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.011 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0068 Score=56.22 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|-++.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987765
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0075 Score=56.53 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|++|+|||||+|.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0084 Score=60.28 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.+..++.|+|++||||||+.+.|+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998753
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0088 Score=55.78 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988776
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0066 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999965
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0093 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..-+.|.||+|+|||||++.++....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0081 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||+|.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0075 Score=56.70 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|..|+|||||+|.+.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0097 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999988776
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987665
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0083 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++|+|++|+|||||++.+++-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999887543
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0092 Score=58.78 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.015 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999997643
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0027 Score=59.04 Aligned_cols=28 Identities=36% Similarity=0.723 Sum_probs=22.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.| +.|.||+|+|||||++.|+....
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 33445 77999999999999999998654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0097 Score=54.09 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|||++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=54.40 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=25.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|.++.+-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999887
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.012 Score=57.92 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.++.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999997654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0042 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0082 Score=60.89 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|.+|+|||||+|.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998843
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.017 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
=.++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36889999999999999998753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|-|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999988764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0042 Score=54.50 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998775
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=54.38 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|.++++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999999988776
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=56.84 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988875
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0095 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999997643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=57.42 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999986543
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0063 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.-.++++|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999854
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.13 Score=61.07 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.++.|.||+|+|||||+..++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999888766444
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=51.48 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=53.28 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=27.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++..-+++ .|..++|+||+|||||||...++.-
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 55566666 4788999999999999999998753
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=57.36 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987554
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0043 Score=63.03 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=23.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++++|++|+||||+++.|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999887
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.016 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=22.4
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I 123 (397)
-+++|+++.|.|++|+|||||+.-+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 4799999999999999999997654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.92 E-value=0.0092 Score=55.64 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987664
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.022 Score=51.11 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=25.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++..-+++. |.-+.|.|+||+|||||.-.+..
T Consensus 7 lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 455666654 88899999999999999987754
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.017 Score=53.18 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=25.6
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-..++..++.|+||.||||+|..+.|+--+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3446777899999999999999999986544
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.018 Score=48.74 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455689999999999999999988764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=58.97 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998887
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.13 Score=60.22 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.2
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.++.|.||+|||||||+-.++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999887765443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999987653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=55.45 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=26.4
Q ss_pred eeeeEEEcCC--cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 94 TLSDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 94 ~~isl~I~~G--e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3343344444 3489999999999999999998764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.02 Score=54.63 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+-.++++|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.022 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+++|+||+|||||||.+.|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987554
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.016 Score=55.91 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998775
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.38 E-value=0.013 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHH-HHccc
Q 015952 105 SLLLIGPKGSGKSSLVNR-ISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~-I~Gl~ 127 (397)
.++|+|+.|+|||||++. +.|-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999998 65543
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.024 Score=53.43 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++..+.|.||+|+|||||.+.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 355789999999999999999988765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.027 Score=54.49 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998776
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.0078 Score=53.18 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3589999999999999988864
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.026 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999986554
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.02 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|||++|+|||||+|.+.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.028 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988765
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.025 Score=54.30 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+-.++|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.026 Score=55.33 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+++|+|+.|+|||||++.+++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988765
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.028 Score=54.35 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+..-+.|.||.|+|||||++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34568899999999999999999865
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++..++++|.+|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.027 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999986554
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.0049 Score=54.40 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988763
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.025 Score=55.21 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||+|+||||+.++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44588999999999999999998764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.028 Score=52.36 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.++....
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 578999999999999999988643
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.019 Score=58.47 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred eeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccC
Q 015952 96 SDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 96 isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-.+..|.+ +.|.||+|+|||||+++|+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3334444554 88999999999999999999876
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.033 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLV-NRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl-~~I~Gl~ 127 (397)
+|.++.+.||.||||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999997 5555443
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.019 Score=56.14 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|..|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.03 Score=52.39 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||+|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998765
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.027 Score=56.45 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|.+++|||||+|.+.|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999854
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.032 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||.|+|||+|.+.|+.-+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577889999999999999998654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.78 E-value=0.037 Score=53.21 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..-+.|.||+|+|||||++.|+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34588999999999999999988654
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.039 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
|..+.|.||.|+|||||++.+..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.041 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..-+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999987654
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.026 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++..++++|.+|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.038 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..+.|.||.|+|||||++.++....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998763
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.03 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|..|+|||||+|.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.037 Score=54.18 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
-.+++|..+.|.||.|||||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678889999999999999999999874
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.044 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.027 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+|-.++|+|+.|+|||||+|.+.|-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34459999999999999999999853
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.038 Score=54.18 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.8
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+.++++----++|+|.++||||||++.+++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 4555554445899999999999999999875
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.038 Score=52.94 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.058 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.-+.|.||+|+|||+|++.|.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345688999999999999999998765
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.033 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
--.++|+|+.|+|||||+|.|.|-.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999964
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.04 Score=57.07 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|-.+.|+|.+||||||+-+.|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998876
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.046 Score=57.39 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|-++.|.|++||||||+.+.|+..+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999988664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 397 | ||||
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 0.001 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.003 |
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.001
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 156
D DV T +L+IG G GKSSL+ R F +D F E A + ++ +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLR----FTDDTFDPELAATIGV------DFKVKTIS 50
Query: 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216
+ +++DT + + + R + VI D + ++
Sbjct: 51 VDGNKAKLAIWDTAGQERFRT----LTPSYY----RGAQGVILVYDVTRRDTFVKLDNWL 102
Query: 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 266
E R + L K + + +V++ A + ++
Sbjct: 103 NELETYCTRNDIVNM-----LVGNKIDKENREVDRNEGLKFARKHSMLFI 147
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 96 SDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154
S+YD + K LLLIG G GKS L+ R F +D + ++ Y S++G + ++
Sbjct: 1 SEYDYLFK---LLLIGNSGVGKSCLLLR----FSDDTYTND-----YISTIGV-DFKIKT 47
Query: 155 YTIPRGSNSFSLYDT 169
+ + ++DT
Sbjct: 48 VELDGKTVKLQIWDT 62
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.7 bits (84), Expect = 0.003
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
+ ++L++G G GKSS VN I + S + R
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIG--------ERVVSI---SPFQSEGPRPVMVSRSRA 78
Query: 161 SNSFSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSLRN--RMRCKAH 215
+ ++ DT L + N +N+IK ++++ L + R D+ + N ++ KA
Sbjct: 79 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAI 138
Query: 216 KIGCEPSVIRKVNFVIFVVDGL 237
+ K +
Sbjct: 139 TDSFGKGIWNKAIVALTHAQFS 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.66 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.89 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.68 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.55 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.9 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.87 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.74 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.55 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.52 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.47 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.4 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.38 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.32 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.27 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.24 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.23 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.18 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.15 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.14 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.11 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.07 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.06 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.06 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.03 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.02 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.01 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.98 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.87 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.84 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.78 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.77 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.76 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.76 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.75 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.73 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.73 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.71 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.68 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.65 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.63 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.61 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.55 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.53 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.53 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.51 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.49 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.48 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.45 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.39 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.38 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.37 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.37 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.33 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.31 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.3 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.28 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.27 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.26 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.25 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.25 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.22 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.2 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.19 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.15 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.14 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.1 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.09 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.08 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.02 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.0 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.99 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.97 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.97 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.94 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.94 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.91 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.89 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.89 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.88 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.87 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.85 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.85 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.81 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.8 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.74 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.74 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.69 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.67 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.63 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.61 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.59 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.59 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.58 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.58 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.57 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.57 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.56 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.54 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.54 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.51 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.51 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.48 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.41 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.41 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.36 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.33 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.33 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.32 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.32 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.32 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.31 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.28 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.25 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.24 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.23 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.21 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.19 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.17 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.16 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.15 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.14 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.12 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.12 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.05 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.01 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.99 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.96 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.95 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.91 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.9 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.86 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.82 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.71 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.71 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.7 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.68 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.66 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.65 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.65 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.62 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.56 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.49 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.48 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.44 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.42 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.34 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.33 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.19 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.18 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.08 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.01 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.9 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.87 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.76 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.73 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.68 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.55 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.25 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.06 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.99 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.87 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.85 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.83 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.45 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.41 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.24 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.69 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.36 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.23 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.18 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.96 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.83 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.6 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.44 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.38 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.34 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.14 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.68 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.2 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.16 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.41 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.34 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.7 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.19 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 87.11 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.23 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.19 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.74 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.67 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.65 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.55 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.31 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 85.1 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.6 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.45 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.07 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 83.34 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 83.29 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.06 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 82.79 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 82.73 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.47 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.25 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.24 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 81.77 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 81.19 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 81.01 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 80.99 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.65 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 80.54 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 80.26 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.24 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 80.17 |
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.4e-57 Score=426.44 Aligned_cols=214 Identities=14% Similarity=0.208 Sum_probs=185.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|..|+++||+|+|+.+. +.+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~i~~ 71 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVAS 71 (242)
T ss_dssp CCCEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCEEEEEeEEEEECCCC-EEE---EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEEeec
Confidence 46799999999996544 344 999999999999999999999999999999999999 99999999997
Q ss_pred ---------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHH
Q 015952 145 ---------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRM 210 (397)
Q Consensus 145 ---------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQR 210 (397)
+++||||||++.+++ ++||+||+.++.. +.++.++++.++++.+++ +...++|.+||||||||
T Consensus 72 ~~~~~~~~~rr~ig~vfQ~~~L~p---~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQR 148 (242)
T d1oxxk2 72 NGKLIVPPEDRKIGMVFQTWALYP---NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQR 148 (242)
T ss_dssp TTEESSCGGGSCEEEEETTSCCCT---TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH
T ss_pred CchhhcchhhccceEEeccccccc---cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhH
Confidence 357999999999987 7999999999866 566778899999999999 45678899999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
|+|||||+++|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||| ++.++|||
T Consensus 149 vaiARaL~~~P~ll--------llDEPt--~~LD~~~~~--~i~~~i~~l~------~~~g~tvi~vTHd~~~~~~~~dr 210 (242)
T d1oxxk2 149 VALARALVKDPSLL--------LLDEPF--SNLDARMRD--SARALVKEVQ------SRLGVTLLVVSHDPADIFAIADR 210 (242)
T ss_dssp HHHHHHHTTCCSEE--------EEESTT--TTSCGGGHH--HHHHHHHHHH------HHHCCEEEEEESCHHHHHHHCSE
T ss_pred HHHHhHHhhcccce--------eecCCc--cCCCHHHHH--HHHHHHHHHH------hccCCEEEEEECCHHHHHHhCCE
Confidence 99999999999999 555556 777776654 3455555542 3459999999995 88999999
Q ss_pred EEEEeeCCEEeeeCCcccccCCCCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
| ++|++|+|++.|+|++++.+|.+
T Consensus 211 i-~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 211 V-GVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp E-EEEETTEEEEEECHHHHHHSCSS
T ss_pred E-EEEECCEEEEEcCHHHHHhCCCC
Confidence 9 56999999999999999998875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-57 Score=426.98 Aligned_cols=216 Identities=15% Similarity=0.210 Sum_probs=184.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+++||+|+|+.+. ..+.||+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 mi~v~nlsk~y~~~~--~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~i~~~~ 73 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTLS 73 (240)
T ss_dssp CEEEEEEEEEEECSS--CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEECTTC
T ss_pred CEEEEeEEEEeCCCC--eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeEeeeCC
Confidence 689999999997553 22334999999999999999999999999999999999999 99999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRva 212 (397)
+++||||||++++++ ++||+||+.++.. +.++.++++.++++.+|| +...++|.+|||||||||+
T Consensus 74 ~~~~~~~rr~ig~VfQ~~~l~~---~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 74 ESELTKARRQIGMIFQHFNLLS---SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHHHHHHHHHEEECCSSCCCCT---TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHH
T ss_pred hhhhhhhhccccccccccccCC---CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 247999999999887 7999999998753 566778899999999999 5567889999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|||+|||| ++..+||||
T Consensus 151 iAraL~~~P~lL--------llDEPt--~~LD~~~~~--~i~~~l~~l~------~~~g~tvi~vTHdl~~~~~~~dri- 211 (240)
T d3dhwc1 151 IARALASNPKVL--------LCDEAT--SALDPATTR--SILELLKDIN------RRLGLTILLITHEMDVVKRICDCV- 211 (240)
T ss_dssp HHHHHHTCCSEE--------EEESGG--GSSCHHHHH--HHHHHHHHHH------HHHCCEEEEEBSCHHHHHHHCSEE-
T ss_pred HhhhhccCCCeE--------Eecccc--ccCCHHHhh--HHHHHHHHHH------hccCCEEEEEcCCHHHHHHhCCEE-
Confidence 999999999999 555556 777765544 3445554431 3459999999995 889999999
Q ss_pred EEeeCCEEeeeCCcccccCCCCCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIPESSD 315 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~~~~ 315 (397)
++|++|+|+++|+++++|.+|.++.
T Consensus 212 ~vl~~G~iv~~G~~~ei~~~P~~~~ 236 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEVFSHPKTPL 236 (240)
T ss_dssp EEEETTEEEEEEETTTTTCSSCCTT
T ss_pred EEEECCEEEEECCHHHHHhCCCChH
Confidence 5699999999999999999998653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.8e-56 Score=421.66 Aligned_cols=212 Identities=17% Similarity=0.253 Sum_probs=178.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|..|+++||+|+|+ +. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 4 M~~I~v~nlsk~yg-~~--~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~ 72 (239)
T d1v43a3 4 MVEVKLENLTKRFG-NF--TA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 72 (239)
T ss_dssp CCCEEEEEEEEEET-TE--EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred cCeEEEEEEEEEEC-CE--EE---EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEcceeccc
Confidence 66799999999995 33 33 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIAr 215 (397)
+++||||||++.+++ ++||+||+.++.. ++++.++++.++++.+++ +..+++|.+|||||||||+|||
T Consensus 73 ~~~~~r~ig~v~Q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 73 LPPKDRNISMVFQSYAVWP---HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp SCGGGGTEEEEEC---------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHH
T ss_pred CCcccceEEEEeechhhcc---cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHh
Confidence 367999999999987 7999999999875 567788899999999999 4567889999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||| ++.++|||| ++|
T Consensus 150 aL~~~P~iL--------llDEPt--s~LD~~~~~--~i~~ll~~l~------~~~g~tii~vTHd~~~a~~~~dri-~vm 210 (239)
T d1v43a3 150 AIVVEPDVL--------LMDEPL--SNLDAKLRV--AMRAEIKKLQ------QKLKVTTIYVTHDQVEAMTMGDRI-AVM 210 (239)
T ss_dssp HHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred hhccCCCce--------eecCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCeEEEEeCCHHHHHHhCCEE-EEE
Confidence 999999999 555556 777765544 3444444431 2459999999995 899999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|+|+++|++++++.+|.+
T Consensus 211 ~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 211 NRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp ETTEEEEEECHHHHHHCCSB
T ss_pred ECCEEEEEcCHHHHHhCCCC
Confidence 99999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.3e-56 Score=420.32 Aligned_cols=212 Identities=16% Similarity=0.209 Sum_probs=182.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|+.|+++||+|+|++ . .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~i~v~nl~k~yg~-~--~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~i~~ 69 (240)
T d1g2912 1 MAGVRLVDVWKVFGE-V--TA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVAD 69 (240)
T ss_dssp CEEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCcEEEEeEEEEECC-E--EE---EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEEecc
Confidence 567999999999953 3 33 999999999999999999999999999999999999 99999999997
Q ss_pred ----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHH
Q 015952 145 ----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNR 209 (397)
Q Consensus 145 ----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQ 209 (397)
+++||||||++.+++ ++||+||+.++.. +.++.++++.++++.+++ +..+++|.+|||||||
T Consensus 70 ~~~~~~~~~~~r~ig~v~Q~~~L~~---~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQ 146 (240)
T d1g2912 70 PEKGIFVPPKDRDIAMVFQSYALYP---HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ 146 (240)
T ss_dssp GGGTEECCGGGSSEEEECSCCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHH
T ss_pred cchhhhcccccccceecccchhhcc---hhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 257999999999987 7999999998754 567788899999999999 4457889999999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||| ++.++||
T Consensus 147 Rv~IAraL~~~P~iL--------llDEPt--~~LD~~~~~--~i~~~l~~l~------~~~g~tvi~vTHd~~~~~~~~d 208 (240)
T d1g2912 147 RVALGRAIVRKPQVF--------LMDEPL--SNLDAKLRV--RMRAELKKLQ------RQLGVTTIYVTHDQVEAMTMGD 208 (240)
T ss_dssp HHHHHHHHHTCCSEE--------EEECTT--TTSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHHHhcCCCEE--------EecCCC--cccCHHHHH--HHHHHHHHHH------hccCCEEEEEcCCHHHHHHhCC
Confidence 999999999999999 555556 777755444 3444454432 2359999999995 8999999
Q ss_pred EEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
|| ++|++|+|++.|++++++.+|.+
T Consensus 209 rv-~vm~~G~iv~~G~~~el~~~P~~ 233 (240)
T d1g2912 209 RI-AVMNRGVLQQVGSPDEVYDKPAN 233 (240)
T ss_dssp EE-EEEETTEEEEEECHHHHHHSCSB
T ss_pred EE-EEEECCEEEEEcCHHHHHhCCCC
Confidence 99 56999999999999999998864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-56 Score=419.62 Aligned_cols=209 Identities=16% Similarity=0.214 Sum_probs=148.5
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------- 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------- 144 (397)
|+++||+|+|++ . .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 Iev~nv~k~yg~-~--~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~~~~ 69 (232)
T d2awna2 1 VQLQNVTKAWGE-V--VV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMNDTPP 69 (232)
T ss_dssp EEEEEEEEEETT-E--EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSCCTTSCG
T ss_pred CEEEEEEEEECC-E--EE---EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEECCCCch
Confidence 689999999953 3 33 999999999999999999999999999999999999 99999999997
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHc
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+++||||||++.+++ ++||+||+.++.. ++++.++++.++++.+++ +..+++|.+|||||||||+|||||+
T Consensus 70 ~~r~ig~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 70 AERGVGMVFQSYALYP---HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp GGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred hhceeeeecccccccc---chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 467999999999987 7999999999866 456777889999999999 5567889999999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCC
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G 296 (397)
.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++|
T Consensus 147 ~~P~il--------llDEPt--s~LD~~~~~--~i~~~l~~l~------~~~g~tii~vTHd~~~a~~~~dri-~vm~~G 207 (232)
T d2awna2 147 AEPSVF--------LLDEPL--SNLDAALRV--QMRIEISRLH------KRLGRTMIYVTHDQVEAMTLADKI-VVLDAG 207 (232)
T ss_dssp TCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHSCCEEEEEESCHHHHHHHCSEE-EEEETT
T ss_pred cCCCEE--------EEcCCC--CCCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECC
Confidence 999999 555556 777765443 3344444432 3479999999995 899999999 569999
Q ss_pred EEeeeCCcccccCCCCC
Q 015952 297 ELLGIPPAKQIFDIPES 313 (397)
Q Consensus 297 ~iv~~g~~~el~~~~~~ 313 (397)
+|+++|++++++.+|.+
T Consensus 208 ~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 208 RVAQVGKPLELYHYPAD 224 (232)
T ss_dssp EEEEEECHHHHHHSCSB
T ss_pred EEEEEeCHHHHHhCCCC
Confidence 99999999999998864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-55 Score=413.43 Aligned_cols=210 Identities=12% Similarity=0.205 Sum_probs=177.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+++||+|+|++ .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 mi~v~nlsk~y~~--~a-----L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~i~~~~ 68 (229)
T d3d31a2 1 MIEIESLSRKWKN--FS-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLS 68 (229)
T ss_dssp CEEEEEEEEECSS--CE-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSC
T ss_pred CEEEEEEEEEeCC--EE-----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEeccccc
Confidence 6899999999953 24 999999999999999999999999999999999999 99999999998
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
+++||||||++.+++ ++||+||+.++.. ......+++.++++.+++. ..++++.+|||||||||+|||||+.+
T Consensus 69 ~~~r~ig~v~Q~~~l~~---~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 69 PEKHDIAFVYQNYSLFP---HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp HHHHTCEEECTTCCCCT---TSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred hhHhcceeeccccccCc---cccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhcc
Confidence 357999999999987 7999999998765 1112345788999999994 45778899999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~i 298 (397)
|++| +||||| ++||+.... ...+.+.++ ..+.|+|||+|||| ++.++|||| ++|++|+|
T Consensus 146 P~iL--------llDEPt--s~LD~~~~~--~i~~~l~~l------~~~~g~tii~vtHd~~~~~~~~drv-~vm~~G~i 206 (229)
T d3d31a2 146 PKIL--------LLDEPL--SALDPRTQE--NAREMLSVL------HKKNKLTVLHITHDQTEARIMADRI-AVVMDGKL 206 (229)
T ss_dssp CSEE--------EEESSS--TTSCHHHHH--HHHHHHHHH------HHHTTCEEEEEESCHHHHHHHCSEE-EEESSSCE
T ss_pred CCce--------eecCCC--cCCCHHHHH--HHHHHHHHH------HhcCCcEEEEEcCCHHHHHHhCCEE-EEEECCEE
Confidence 9999 555555 677755444 344444443 13469999999995 899999999 46999999
Q ss_pred eeeCCcccccCCCCCC
Q 015952 299 LGIPPAKQIFDIPESS 314 (397)
Q Consensus 299 v~~g~~~el~~~~~~~ 314 (397)
+++|++++++.+|.+.
T Consensus 207 v~~g~~~el~~~P~~~ 222 (229)
T d3d31a2 207 IQVGKPEEIFEKPVEG 222 (229)
T ss_dssp EEEECHHHHHSSCCTT
T ss_pred EEEcCHHHHHhCCCCH
Confidence 9999999999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-55 Score=410.35 Aligned_cols=205 Identities=18% Similarity=0.236 Sum_probs=171.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
||+++||+|+|+.+. ..+.||+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 1 mI~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~i~~~~ 73 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDLD 73 (230)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTCC
T ss_pred CEEEEeEEEEeCCCC--eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEEcCcCC
Confidence 689999999996544 22334999999999999999999999999999999999999 999999999982
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCcc--cccCCCCCChHH
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLR 207 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGq 207 (397)
++||||||++.+++ ++||+||+.++.. ..++..+++.++++.+++.+ ...+|.+|||||
T Consensus 74 ~~~~~~~r~~~ig~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGq 150 (230)
T d1l2ta_ 74 DDELTKIRRDKIGFVFQQFNLIP---LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (230)
T ss_dssp HHHHHHHHHHHEEEECTTCCCCT---TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred hhhcchhhcceEEEEecchhhCc---CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHH
Confidence 36999999999887 7999999988542 44566778889999999943 467899999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
||||+|||||+.+|++| +||||| ++||+.+.. ..++.+.++ ..+.|+|||+|||| +++++|
T Consensus 151 kQRvaIAraL~~~P~lL--------llDEPT--s~LD~~~~~--~i~~~l~~l------~~~~g~tii~vTHd~~~a~~~ 212 (230)
T d1l2ta_ 151 QQRVAIARALANNPPII--------LADQPT--GALDSKTGE--KIMQLLKKL------NEEDGKTVVVVTHDINVARFG 212 (230)
T ss_dssp HHHHHHHHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHH------HHTTCCEEEEECSCHHHHTTS
T ss_pred HHHHHHHhhhhcCCCEE--------EecCCc--cccCHHHHH--HHHHHHHHH------HHhhCCEEEEECCCHHHHHhC
Confidence 99999999999999999 555556 777765554 344555443 13569999999996 556899
Q ss_pred cEEEEEeeCCEEeeeCCc
Q 015952 287 DRARIRTYLGELLGIPPA 304 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~ 304 (397)
||| ++|++|+|+++|++
T Consensus 213 drv-~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 213 ERI-IYLKDGEVEREEKL 229 (230)
T ss_dssp SEE-EEEETTEEEEEEEC
T ss_pred CEE-EEEECCEEEEeccC
Confidence 999 57999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-53 Score=406.48 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=183.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
.|+++||+|+|+ +..+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 2 ~Lev~nl~k~yg-~~~a-----l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-GHEV-----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLVR 70 (258)
T ss_dssp CEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEEE
T ss_pred eEEEEEEEEEEC-CEEE-----EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEeccCC
Confidence 589999999995 3324 999999999999999999999999999999999999 999999999972
Q ss_pred ------------------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----ChhhHHHHHHHHHHHCCCcc--cccCC
Q 015952 146 ------------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----ASDNINMIKLWIMEGVRHGE--LVIRR 200 (397)
Q Consensus 146 ------------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----~~~~~~~~~~~ll~~vgl~~--~~~~~ 200 (397)
++||||||++.+++ .+||+||+.++.. ...+.++++.++++.+++.+ ..++|
T Consensus 71 ~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~---~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p 147 (258)
T d1b0ua_ 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS---HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 147 (258)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG
T ss_pred ccchhcccccHhHHHHHhcceEEEEechhhcc---chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc
Confidence 46999999999887 7999999987521 55677788999999999944 35668
Q ss_pred CCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 201 ~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+|||||||||+|||||+.+|++| +||||| ++||+.... +..+.+.++ .++|+|||+||||
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~ll--------ilDEPT--~gLD~~~~~--~i~~ll~~l-------~~~g~til~vtHd 208 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVL--------LFDEPT--SALDPELVG--EVLRIMQQL-------AEEGKTMVVVTHE 208 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHH-------HHTTCCEEEECSC
T ss_pred ccccHHHHHHHHHHHHHhcCCCEE--------Eecccc--ccCCHHHHH--HHHHhhhhh-------cccCCceEEEeCC
Confidence 999999999999999999999999 666666 788865544 344555443 2469999999995
Q ss_pred --hHHccccEEEEEeeCCEEeeeCCcccccCCCCCCChhhHHHHHH
Q 015952 281 --DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (397)
Q Consensus 281 --~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~~~~~~~~~~i~~ 324 (397)
++.++|||| ++|++|+|+++|++++++.+|.+ +.+..++..
T Consensus 209 l~~~~~~adri-~vm~~G~iv~~g~~~ev~~~P~~--~~~~~ll~~ 251 (258)
T d1b0ua_ 209 MGFARHVSSHV-IFLHQGKIEEEGDPEQVFGNPQS--PRLQQFLKG 251 (258)
T ss_dssp HHHHHHHCSEE-EEEETTEEEEEECHHHHHHSCCS--HHHHHHHHH
T ss_pred HHHHHHhCCEE-EEEECCEEEEEcCHHHHHhCCCC--HHHHHHHhC
Confidence 889999999 56999999999999999999874 345554433
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-51 Score=389.84 Aligned_cols=209 Identities=13% Similarity=0.210 Sum_probs=173.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
..+|+++||+|+|+ +. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 4 d~~Lev~~l~k~yg-~~--~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~i~~ 72 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-AI--HA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEET-TE--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred ceEEEEeeEEEEEC-CE--EE---EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEeccccccc
Confidence 35899999999995 33 33 999999999999999999999999999999999999 99999999998
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHC-CC-cccccCCCCCChHHHHHHH
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGV-RH-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~v-gl-~~~~~~~~~lSGGqkQRva 212 (397)
+..++|+||++.+|+ .+||+||+.++.. ..+..++.++++++.+ ++ +...+++.+|||||||||+
T Consensus 73 ~~~~~~~r~gi~~~~q~~~l~~---~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 73 KPAHVINRMGIALVPEGRRIFP---ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCT---TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH
T ss_pred ccHHHHHHhcccccCcccccCC---cccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHH
Confidence 245999999999987 7999999988754 3444555666777776 56 4456778999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++||||
T Consensus 150 iAraL~~~P~lL--------llDEPt--~gLD~~~~~--~i~~~i~~l-------~~~g~til~~tH~l~~~~~~~drv- 209 (240)
T d1ji0a_ 150 IGRALMSRPKLL--------MMDEPS--LGLAPILVS--EVFEVIQKI-------NQEGTTILLVEQNALGALKVAHYG- 209 (240)
T ss_dssp HHHHHTTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHH-------HHTTCCEEEEESCHHHHHHHCSEE-
T ss_pred HHHHHHhCCCEe--------eecCCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-
Confidence 999999999999 555556 777765444 344555443 2469999999994 899999999
Q ss_pred EEeeCCEEeeeCCcccccCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~ 311 (397)
++|++|+++++|+++++++++
T Consensus 210 ~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 210 YVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp EEEETTEEEEEEEHHHHHTCH
T ss_pred EEEECCEEEEEcCHHHHhcCH
Confidence 469999999999999998653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.8e-51 Score=389.42 Aligned_cols=208 Identities=14% Similarity=0.174 Sum_probs=174.5
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
+|.+|+++||+|+|+ +. ++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 1 tM~iL~v~nlsk~yg-~~--~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 1 TMEILRTENIVKYFG-EF--KA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDIT 69 (254)
T ss_dssp CCEEEEEEEEEEEET-TE--EE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECT
T ss_pred CcceEEEEEEEEEEC-Ce--EE---EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEecc
Confidence 377999999999995 33 33 999999999999999999999999999999999999 999999999982
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----------------ChhhHHHHHHHHHHHCCCcc-ccc
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----------------ASDNINMIKLWIMEGVRHGE-LVI 198 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----------------~~~~~~~~~~~ll~~vgl~~-~~~ 198 (397)
..|+|+||++.+++ ++||+||+.++.. ..++..+++.++++.+++.+ ..+
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 146 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLK---EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 146 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGG---GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS
T ss_pred chhHHHHHHhcCCccCCccccCC---CCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccC
Confidence 35999999998877 7999999988632 23345567888999999954 456
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
++.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+||
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~ll--------ilDEPt--~gLD~~~~~--~i~~~i~~l-------~~~g~til~vs 207 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMI--------VMDEPI--AGVAPGLAH--DIFNHVLEL-------KAKGITFLIIE 207 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEEC
T ss_pred chhhCCcHHHHHHHHHHHHHhCcCch--------hhcCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEe
Confidence 78899999999999999999999999 666666 777765443 344455443 24799999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
|| ++.++|||| ++|++|+|+++|+++|++.
T Consensus 208 Hdl~~~~~~~Drv-~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 208 HRLDIVLNYIDHL-YVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp SCCSTTGGGCSEE-EEEETTEEEEEEESHHHHH
T ss_pred CcHHHHHHhCCEE-EEEeCCEEEEEecHHHHhh
Confidence 95 999999999 5699999999999988653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.2e-51 Score=383.16 Aligned_cols=205 Identities=16% Similarity=0.196 Sum_probs=173.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
.|++ ++.|+|+ ... + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 2 ~l~v-~~~k~~g--~~~-----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~i~~~~ 66 (240)
T d2onka1 2 FLKV-RAEKRLG--NFR-----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITPLP 66 (240)
T ss_dssp CEEE-EEEEEET--TEE-----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSC
T ss_pred EEEE-EEEEEEC--CEE-----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCcCC
Confidence 4678 6789994 322 5 7999996 68999999999999999999999999 99999999998
Q ss_pred --eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcC
Q 015952 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 145 --~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+++||||||++.+++ ++||+||+.|+.. .+.+.++++.++++.+|+ +...++|.+|||||||||+|||||+.
T Consensus 67 ~~~r~ig~v~Q~~~l~~---~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 67 PERRGIGFVPQDYALFP---HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp TTTSCCBCCCSSCCCCT---TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HHHcCceeeccchhhcc---cchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 468999999999987 7999999999876 556677889999999999 45678899999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||+ ++.++|||| ++|++|+
T Consensus 144 ~P~il--------llDEPt--s~LD~~~~~--~i~~~i~~l~------~~~g~tvi~vtHd~~~~~~~adri-~vm~~G~ 204 (240)
T d2onka1 144 QPRLL--------LLDEPL--SAVDLKTKG--VLMEELRFVQ------REFDVPILHVTHDLIEAAMLADEV-AVMLNGR 204 (240)
T ss_dssp CCSSB--------EEESTT--SSCCHHHHH--HHHHHHHHHH------HHHTCCEEEEESCHHHHHHHCSEE-EEEETTE
T ss_pred cCCce--------EecCcc--ccCCHHHHH--HHHHHHHHHH------HhcCCeEEEEeCCHHHHHHhCCEE-EEEECCE
Confidence 99999 555556 777765544 3444454431 2458999999995 899999999 5699999
Q ss_pred EeeeCCcccccCCCC
Q 015952 298 LLGIPPAKQIFDIPE 312 (397)
Q Consensus 298 iv~~g~~~el~~~~~ 312 (397)
+++.|+++++++.|+
T Consensus 205 ii~~G~~~el~~~~~ 219 (240)
T d2onka1 205 IVEKGKLKELFSAKN 219 (240)
T ss_dssp EEEEECHHHHHHSCC
T ss_pred EEEEecHHHHhcCCC
Confidence 999999999997664
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-51 Score=387.64 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=165.8
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
..|+++||+|+|++.....+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|.++|+
T Consensus 10 g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~i~~~ 81 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKPLPQY 81 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGGB
T ss_pred ceEEEEEEEEECCCCCCCEe---EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEecchh
Confidence 35999999999964321123 999999999999999999999999999999999999 99999999998
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC---hhhHH-----HHHHHHHHHC--CC-cccccCCCCCChHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA---SDNIN-----MIKLWIMEGV--RH-GELVIRRSDSSSLRN 208 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~---~~~~~-----~~~~~ll~~v--gl-~~~~~~~~~lSGGqk 208 (397)
+++|+||||++.+|+ .|++||+.++... ..... ....+.++.+ ++ .....++.+||||||
T Consensus 82 ~~~~~r~~i~~v~Q~~~lf~----~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqk 157 (251)
T d1jj7a_ 82 EHRYLHRQVAAVGQEPQVFG----RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQR 157 (251)
T ss_dssp CHHHHHHHEEEECSSCCCCS----SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHH
T ss_pred hhHHHHHHhhhccccccccC----cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHc
Confidence 367999999999886 6999999998542 11111 1122345554 23 223556889999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
|||+|||||+++|++| +||||| ++||+.+.. ...+.+.++ ..+.|+|||+|||+ .+.+.||
T Consensus 158 QRvaiARal~~~p~il--------ilDEpT--s~LD~~~~~--~i~~~l~~l------~~~~~~Tvi~itH~l~~~~~aD 219 (251)
T d1jj7a_ 158 QAVALARALIRKPCVL--------ILDDAT--SALDANSQL--QVEQLLYES------PERYSRSVLLITQHLSLVEQAD 219 (251)
T ss_dssp HHHHHHHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHTC------GGGGGCEEEEECSCHHHHHTCS
T ss_pred eEEEEeeccccCCcEE--------EecCcC--cccChhhHH--HHHHHHHHH------hhhcCCEEEEEeCCHHHHHhCC
Confidence 9999999999999999 666666 778765443 234444332 12458999999997 6667899
Q ss_pred EEEEEeeCCEEeeeCCcccccCCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|| ++|++|+|++.|+++++++.+
T Consensus 220 rI-~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 220 HI-LFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp EE-EEEETTEEEEEECHHHHHHHT
T ss_pred EE-EEEECCEEEEECCHHHHHhCC
Confidence 99 579999999999999998653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.3e-51 Score=386.42 Aligned_cols=204 Identities=12% Similarity=0.210 Sum_probs=163.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
||+++||+|+|+++.++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 mle~knvsf~Y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~ 70 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS 70 (242)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEECCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEEecccc
Confidence 68999999999755545 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc------------ccccCCCCCChHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG------------ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~------------~~~~~~~~lSGGqk 208 (397)
+++||||||++.+|. .|++||+.++...... .....+.++..++. ....++.+||||||
T Consensus 71 ~~~~r~~i~~v~Q~~~lf~----~ti~eNi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk 145 (242)
T d1mv5a_ 71 LENWRSQIGFVSQDSAIMA----GTIRENLTYGLEGDYT-DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (242)
T ss_dssp CSCCTTTCCEECCSSCCCC----EEHHHHTTSCTTSCSC-HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHHHHhheEEEccccccCC----cchhhheecccccccc-hhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence 467999999999886 5999999887542111 11122233333221 11234667999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
|||+|||||+.+|+|| +||||| ++||+.+.. ...+.+.++ .+|+|||+|||+ .....||
T Consensus 146 QRv~iARal~~~p~il--------ilDEpt--s~LD~~~~~--~i~~~l~~l--------~~~~Tvi~itH~l~~~~~~D 205 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKIL--------MLDEAT--ASLDSESES--MVQKALDSL--------MKGRTTLVIAHRLSTIVDAD 205 (242)
T ss_dssp HHHHHHHHHHHCCSEE--------EEECCS--CSSCSSSCC--HHHHHHHHH--------HTTSEEEEECCSHHHHHHCS
T ss_pred HHHHHHHHHhcCCCEE--------EecCCc--cccCHHHHH--HHHHHHHHH--------cCCCEEEEEECCHHHHHhCC
Confidence 9999999999999999 556666 788877665 345555443 358999999996 5556799
Q ss_pred EEEEEeeCCEEeeeCCcccccCC
Q 015952 288 RARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~~ 310 (397)
|| ++|++|+|++.|++++++..
T Consensus 206 ~i-~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 206 KI-YFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp EE-EEEETTEECCCSCHHHHHHH
T ss_pred EE-EEEECCEEEEECCHHHHHhC
Confidence 99 57999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-50 Score=381.70 Aligned_cols=206 Identities=18% Similarity=0.268 Sum_probs=162.9
Q ss_pred EEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 72 lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
|+++||+|+|+.+. ++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 2 I~~~nvsf~Y~~~~~~v-----L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~ 71 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVI-----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALAD 71 (241)
T ss_dssp EEEEEEEEESSTTSCEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTSC
T ss_pred eEEEEEEEEeCCCCcce-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEEecccc
Confidence 78999999996443 35 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHH-----HHHHHHCCCc---ccccCCCCCChHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIK-----LWIMEGVRHG---ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~-----~~ll~~vgl~---~~~~~~~~lSGGqkQR 210 (397)
++.||||||++.+|. .||+||+.++.. ..++..... .+.+..+..+ ....++..||||||||
T Consensus 72 ~~~lr~~i~~v~Q~~~lf~----~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QR 147 (241)
T d2pmka1 72 PNWLRRQVGVVLQDNVLLN----RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 147 (241)
T ss_dssp HHHHHHHEEEECSSCCCTT----SBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHH
T ss_pred hhhhhceEEEEecccccCC----ccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHH
Confidence 467999999998886 699999999765 222221111 1122222211 1234578899999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
|+|||||+++|++| +||||| ++||+.+.. ...+.+.++ .+|+|||+|||+ ...+.||||
T Consensus 148 valARal~~~p~il--------ilDEpt--s~LD~~~~~--~i~~~l~~l--------~~~~Tvi~itH~l~~~~~~D~i 207 (241)
T d2pmka1 148 IAIARALVNNPKIL--------IFDEAT--SALDYESEH--VIMRNMHKI--------CKGRTVIIIAHRLSTVKNADRI 207 (241)
T ss_dssp HHHHHHHTTCCSEE--------EECCCC--SCCCHHHHH--HHHHHHHHH--------HTTSEEEEECSSGGGGTTSSEE
T ss_pred Hhhhhhhhcccchh--------hhhCCc--cccCHHHHH--HHHHHHHHH--------hCCCEEEEEECCHHHHHhCCEE
Confidence 99999999999999 555555 777755544 344444443 358999999996 666889999
Q ss_pred EEEeeCCEEeeeCCcccccCCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|+|++.|++++++.+|.
T Consensus 208 -~vl~~G~Iv~~G~~~ell~~~~ 229 (241)
T d2pmka1 208 -IVMEKGKIVEQGKHKELLSEPE 229 (241)
T ss_dssp -EEEETTEEEEEECHHHHHHSTT
T ss_pred -EEEECCEEEEECCHHHHHhCCC
Confidence 5799999999999999998765
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.7e-50 Score=378.36 Aligned_cols=210 Identities=16% Similarity=0.153 Sum_probs=177.8
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
.|+++||+|+|+. ..+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 2 aI~v~nl~k~yg~-~~v-----l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~i~~~~ 70 (238)
T d1vpla_ 2 AVVVKDLRKRIGK-KEI-----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEEP 70 (238)
T ss_dssp CEEEEEEEEEETT-EEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTCH
T ss_pred CEEEEeEEEEECC-EEE-----EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEecccCh
Confidence 4889999999963 335 999999999999999999999999999999999999 99999999998
Q ss_pred ---eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHH
Q 015952 145 ---VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 145 ---~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArA 216 (397)
++.+||+||++.+++ ++|+.||+.+... ...+..+.++.+++.+++. ...+++.+||||||||++||||
T Consensus 71 ~~~~~~i~~vpq~~~~~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 71 HEVRKLISYLPEEAGAYR---NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp HHHHTTEEEECTTCCCCT---TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHhhEeEeeeccccCC---CccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHH
Confidence 378999999998887 7999999977543 4566778889999999994 4567789999999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
|+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++..+|||| ++|+
T Consensus 148 l~~~p~il--------lLDEPt--~gLD~~~~~--~i~~~i~~~-------~~~g~tii~~tH~l~~~~~~~drv-~vl~ 207 (238)
T d1vpla_ 148 LMVNPRLA--------ILDEPT--SGLDVLNAR--EVRKILKQA-------SQEGLTILVSSHNMLEVEFLCDRI-ALIH 207 (238)
T ss_dssp HTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEEECCHHHHTTTCSEE-EEEE
T ss_pred HhcCCCEE--------EecCCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHHHhCCEE-EEEE
Confidence 99999999 555556 777755433 334444433 2469999999994 999999999 5799
Q ss_pred CCEEeeeCCcccccCCCCCC
Q 015952 295 LGELLGIPPAKQIFDIPESS 314 (397)
Q Consensus 295 ~G~iv~~g~~~el~~~~~~~ 314 (397)
+|+|+++|+++++...+...
T Consensus 208 ~G~iv~~g~~~el~~~~~~~ 227 (238)
T d1vpla_ 208 NGTIVETGTVEELKERYKAQ 227 (238)
T ss_dssp TTEEEEEEEHHHHHHHTTCS
T ss_pred CCEEEEEcCHHHHHhccCCc
Confidence 99999999999998765543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-49 Score=375.64 Aligned_cols=207 Identities=10% Similarity=0.180 Sum_probs=163.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
-|+++||+|+|+++.. .+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|.++|.
T Consensus 13 ~I~~~nvsf~Y~~~~~-~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~ 83 (253)
T d3b60a1 13 DLEFRNVTFTYPGREV-PA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLREYT 83 (253)
T ss_dssp CEEEEEEEECSSSSSC-CS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTTBC
T ss_pred EEEEEEEEEEeCCCCC-ce---eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcccchhh
Confidence 5999999999965431 23 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHH-----HHHHHHC--CC-cccccCCCCCChHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIK-----LWIMEGV--RH-GELVIRRSDSSSLRNR 209 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~-----~~ll~~v--gl-~~~~~~~~~lSGGqkQ 209 (397)
++.|+||||++.++. .|+.+|+.++.. ..++..+.. .+.++.+ |+ .....++.+|||||||
T Consensus 84 ~~~~r~~i~~v~Q~~~l~~----~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ 159 (253)
T d3b60a1 84 LASLRNQVALVSQNVHLFN----DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 159 (253)
T ss_dssp HHHHHHTEEEECSSCCCCS----SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred hhhhhheEEEEeeccccCC----cchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHH
Confidence 357999999999886 699999998753 222222111 1233333 23 2234567889999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccE
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDR 288 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDr 288 (397)
||+|||||+++|++| +||||| ++||+.++. ...+.+.++ .+++|||+|||+ ...+.|||
T Consensus 160 RvaiARal~~~p~il--------ilDEpt--s~LD~~~~~--~i~~~l~~l--------~~~~Tvi~itH~l~~~~~~D~ 219 (253)
T d3b60a1 160 RIAIARALLRDSPIL--------ILDEAT--SALDTESER--AIQAALDEL--------QKNRTSLVIAHRLSTIEQADE 219 (253)
T ss_dssp HHHHHHHHHHCCSEE--------EEETTT--SSCCHHHHH--HHHHHHHHH--------HTTSEEEEECSCGGGTTTCSE
T ss_pred HHHHHHHHhcCCCEE--------Eecccc--ccCCHHHHH--HHHHHHHHh--------ccCCEEEEEECCHHHHHhCCE
Confidence 999999999999999 555556 777755443 344444443 358999999996 66678999
Q ss_pred EEEEeeCCEEeeeCCcccccCCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~~ 311 (397)
| ++|++|+|++.|++++++.+.
T Consensus 220 v-~vl~~G~Iv~~G~~~eLl~~~ 241 (253)
T d3b60a1 220 I-VVVEDGIIVERGTHSELLAQH 241 (253)
T ss_dssp E-EEEETTEEEEEECHHHHHHHT
T ss_pred E-EEEECCEEEEECCHHHHHhCC
Confidence 9 579999999999999998653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7.3e-49 Score=373.51 Aligned_cols=204 Identities=13% Similarity=0.195 Sum_probs=165.3
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----- 144 (397)
-|+++||+|+|+++. ++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 16 ~I~~~nvsf~Y~~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~ 85 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPI-----LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKDF 85 (255)
T ss_dssp CEEEEEEEECSCSSSCCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGGS
T ss_pred EEEEEEEEEEeCCCCCcc-----eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEEcccC
Confidence 599999999996543 34 999999999999999999999999999999999999 99999999998
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLR 207 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGq 207 (397)
++.|+||||++.+|. .||+||+.++..... .+.+.++++.+++.+ ...++..|||||
T Consensus 86 ~~~~lr~~i~~v~Q~~~lf~----~Ti~eNi~~g~~~~~--~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 159 (255)
T d2hyda1 86 LTGSLRNQIGLVQQDNILFS----DTVKENILLGRPTAT--DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 159 (255)
T ss_dssp CHHHHHHTEEEECSSCCCCS----SBHHHHHGGGCSSCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CHHHhhheeeeeeccccCCC----CCHHHHHhccCcCCC--HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHH
Confidence 468999999999886 699999999864211 123344555555421 223466799999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
|||++|||||+++|++| +||||| ++||+.++. ...+.+.++ .+++|||+|||+ ...+.|
T Consensus 160 ~QRi~iARal~~~p~il--------ilDEpt--s~LD~~t~~--~i~~~l~~l--------~~~~TvI~itH~~~~~~~~ 219 (255)
T d2hyda1 160 KQRLSIARIFLNNPPIL--------ILDEAT--SALDLESES--IIQEALDVL--------SKDRTTLIVAHRLSTITHA 219 (255)
T ss_dssp HHHHHHHHHHHHCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH--------TTTSEEEEECSSGGGTTTC
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHH--------hcCCEEEEEeCCHHHHHhC
Confidence 99999999999999999 555556 777765543 344444433 358899999996 667889
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
||| ++|++|+|++.|++++++.++
T Consensus 220 D~i-i~l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 220 DKI-VVIENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp SEE-EEEETTEEEEEECHHHHHHTT
T ss_pred CEE-EEEECCEEEEECCHHHHHhCC
Confidence 999 579999999999999998764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-45 Score=350.85 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=143.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++| +++|++|++.+++ .||+||+.+
T Consensus 52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g---~i~~v~Q~~~l~~----~tv~eni~~ 119 (281)
T d1r0wa_ 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSG---RVSFCSQFSWIMP----GTIKENIIF 119 (281)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEECCS---CEEEECSSCCCCS----EEHHHHHTT
T ss_pred EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEEECC---EEEEEeccccccC----ceeeccccc
Confidence 999999999999999999999999999999999999 9999999998 5999999998886 699999999
Q ss_pred CCCChhhHHHHHHHHHHHCC-------Cc-----ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhh
Q 015952 173 SDDASDNINMIKLWIMEGVR-------HG-----ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 240 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vg-------l~-----~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~ 240 (397)
+....... ...+++.+. +. ....++.+|||||||||+|||||+++|+|| +|||||
T Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il--------lLDEPt-- 186 (281)
T d1r0wa_ 120 GVSYDEYR---YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY--------LLDSPF-- 186 (281)
T ss_dssp TSCCCHHH---HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE--------EEESCC--
T ss_pred cccccchH---HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch--------hhcCcc--
Confidence 86522211 112222222 21 123456789999999999999999999999 555556
Q ss_pred ccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccC
Q 015952 241 KSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 241 s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
++||+.+.. +.+..++ .....++|+|+|||+ +..++|||| ++|++|+|++.|++++++.
T Consensus 187 s~LD~~~~~-----~i~~~~~----~~~~~~~tvi~itH~~~~l~~aDrI-~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 187 GYLDVFTEE-----QVFESCV----CKLMANKTRILVTSKMEHLRKADKI-LILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CSSCHHHHH-----HHHHHCC----CCCTTTSEEEEECSCHHHHHTCSEE-EEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHH-----HHHHHHH----HHhhCCCEEEEEechHHHHHhCCEE-EEEECCEEEEECCHHHHhc
Confidence 777754433 2222222 223478999999996 667889999 5799999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-44 Score=339.64 Aligned_cols=201 Identities=16% Similarity=0.190 Sum_probs=163.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
+++++||+++| . |++|||+|++||++||+||||||||||+|+|+|+ . |++|+|.++|+.
T Consensus 3 il~~~dv~~~~-----~-----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~-----~~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 3 VMQLQDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-----SGKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEECCTT-----T-----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C-----CCSSEEEESSSBGGGSC
T ss_pred EEEEECcccCc-----e-----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C-----CCceEEEECCEECCcCC
Confidence 68999997655 2 9999999999999999999999999999999996 4 678999999982
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
..++|++|+...+. ..++++++.++.... ...+.+.++++.+++ +...+++.+|||||||||+|||||++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~ 142 (231)
T d1l7vc_ 67 ATKLALHRAYLSQQQTPPF---ATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (231)
T ss_dssp HHHHHHHEEEECSCCCCCS---SCBHHHHHHHHCSCT-TCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhceeeeccccCCc---cccHHHHhhhccchh-hHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHh
Confidence 35899999876544 578999998876532 334567889999999 45567788999999999999999986
Q ss_pred -------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 220 -------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 220 -------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++||||
T Consensus 143 ~~p~~~p~p~ll--------llDEPt--~gLD~~~~~--~i~~~i~~l-------~~~g~tii~vtHdl~~~~~~~dri- 202 (231)
T d1l7vc_ 143 ITPQANPAGQLL--------LLDEPM--NSLDVAQQS--ALDKILSAL-------CQQGLAIVMSSHDLNHTLRHAHRA- 202 (231)
T ss_dssp HCTTTCTTCCEE--------EESSCS--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEECCCCHHHHHHHCSBC-
T ss_pred hCcccCCCCCEE--------EEcCCC--CCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHHCCEE-
Confidence 77999 555555 777754433 334444443 2579999999995 899999999
Q ss_pred EEeeCCEEeeeCCcccccCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~ 311 (397)
++|++|++++.|++++++..|
T Consensus 203 ~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CBEETTEECCCSBHHHHSCHH
T ss_pred EEEECCEEEEECCHHHHhCCh
Confidence 569999999999999998654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.2e-42 Score=315.18 Aligned_cols=189 Identities=17% Similarity=0.199 Sum_probs=146.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----e
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----V 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----~ 145 (397)
.|+++||+++|+ +++ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+ +
T Consensus 2 ~lev~~ls~~y~--~~v-----l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~i~~~~ 69 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITKVK 69 (200)
T ss_dssp EEEEEEEEEESS--SEE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGGGG
T ss_pred eEEEEEEEEEeC--CeE-----EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEehhHhc
Confidence 589999999994 346 999999999999999999999999999999999999 99999999997 4
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
.+++|++|+..++. .+|+.+++.+... .....+..+.++++.+++.+..+++.+||||||||++|||||+.+|++
T Consensus 70 ~~i~~~~~~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~l 146 (200)
T d1sgwa_ 70 GKIFFLPEEIIVPR---KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 146 (200)
T ss_dssp GGEEEECSSCCCCT---TSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CcEEEEeecccCCC---CcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCE
Confidence 67999999988876 6899999876432 111123345677888888555667889999999999999999999999
Q ss_pred EeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEechhHHccccEEEEEeeC
Q 015952 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL 295 (397)
Q Consensus 224 LllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~~~~~aDrI~v~l~~ 295 (397)
+ +||||| ++||+.... ...+.+.++. .+.+. +|+++|++ ..+||++ .+|++
T Consensus 147 l--------llDEPt--~gLD~~~~~--~i~~~l~~~~------~~~~~-~ii~~~~~-l~~~D~~-~~l~~ 197 (200)
T d1sgwa_ 147 Y--------VLDDPV--VAIDEDSKH--KVLKSILEIL------KEKGI-VIISSREE-LSYCDVN-ENLHK 197 (200)
T ss_dssp E--------EEESTT--TTSCTTTHH--HHHHHHHHHH------HHHSE-EEEEESSC-CTTSSEE-EEGGG
T ss_pred E--------EEcCcc--cccCHHHHH--HHHHHHHHHH------hCCCE-EEEEEech-hhhcchh-hheee
Confidence 9 556666 778866654 3445554442 12343 33444433 3689999 45764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.66 E-value=1.5e-17 Score=145.03 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=94.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
++|+||||||||||+++|+|+++ ++.|.+.+.+.. .+.++..+...... +.............
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKK-----KIFSSKFFTSKKLV-- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCE-----EEEEETTCCCSSEE--
T ss_pred EEEECCCCcHHHHHHHHHHhcCC-----CCcceEEECCcchHHHHHhhhhhhhhhhHHH-----HHHhhhhhhhhhhh--
Confidence 78999999999999999999999 999999988752 22232221111000 00000000000000
Q ss_pred HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 181 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
.+.+. .....++|+|++||.++++++..+|++|++||| +. .+... ......+.++
T Consensus 71 --------~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~--------~~---~~~~~---~~~~~~l~~~ 125 (178)
T d1ye8a1 71 --------GSYGV---NVQYFEELAIPILERAYREAKKDRRKVIIIDEI--------GK---MELFS---KKFRDLVRQI 125 (178)
T ss_dssp --------TTEEE---CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCC--------ST---TGGGC---HHHHHHHHHH
T ss_pred --------hhhhc---CcchhhhhhhhhHHHHHHHHHhcCCCceeecCC--------Cc---cchhh---HHHHHHHHHH
Confidence 00010 001123689999999999999999999966665 21 11111 1234455444
Q ss_pred cCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeC
Q 015952 261 FNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g 302 (397)
+ ...+.|+|+++|+ ....+|+++ ..+.+|+++..+
T Consensus 126 l------~~~~~~il~~~h~~~~~~~~~~i-~~~~~~~i~~v~ 161 (178)
T d1ye8a1 126 M------HDPNVNVVATIPIRDVHPLVKEI-RRLPGAVLIELT 161 (178)
T ss_dssp H------TCTTSEEEEECCSSCCSHHHHHH-HTCTTCEEEECC
T ss_pred h------ccCCCEEEEEEccHHHHHhhceE-EEEeCCEEEEEC
Confidence 3 2357899999995 667789999 469999998754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=1.1e-08 Score=95.36 Aligned_cols=75 Identities=9% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHH----HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEE
Q 015952 202 DSSSLRNRMRCKAHK----IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 277 (397)
Q Consensus 202 ~lSGGqkQRvaIArA----L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIiv 277 (397)
.+|+|||+...++.. ....|.+++.||| . +.|++.... ...+.+.+. .++.-||++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEp--------e--~~Lhp~~~~--~l~~~l~~~--------~~~~Qviit 278 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEV--------D--SPLDDYNAE--RFKRLLKEN--------SKHTQFIVI 278 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESC--------C--SSCCHHHHH--HHHHHHHHH--------TTTSEEEEE
T ss_pred hhhHHHhhHHHHHhhhhhhhhccCchhhhhhc--------c--ccCCHHHHH--HHHHHHHHh--------ccCCEEEEE
Confidence 459999999877665 3455788855555 4 566643322 233333332 345679999
Q ss_pred ech-hHHccccEEEE-EeeCC
Q 015952 278 THG-DLLSLTDRARI-RTYLG 296 (397)
Q Consensus 278 TH~-~~~~~aDrI~v-~l~~G 296 (397)
||. .+...+|+++. .+.+|
T Consensus 279 THsp~~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 279 THNKIVMEAADLLHGVTMVNG 299 (308)
T ss_dssp CCCTTGGGGCSEEEEEEESSS
T ss_pred ECCHHHHHhcccEEEEEEeCC
Confidence 994 77788998853 35555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=8.6e-06 Score=77.87 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHH----cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 203 SSSLRNRMRCKAHKI----GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 203 lSGGqkQRvaIArAL----~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
+|||||.++++|-.+ ..+++++ +||||+ +.||+.... ...+.+.++. ..+.-+|++|
T Consensus 333 lSgGEk~~~~lal~lal~~~~~~pil--------ilDE~d--~~Ld~~~~~--~~~~~l~~~~-------~~~~Q~I~iT 393 (427)
T d1w1wa_ 333 LSGGEKTVAALALLFAINSYQPSPFF--------VLDEVD--AALDITNVQ--RIAAYIRRHR-------NPDLQFIVIS 393 (427)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEE--------EESSTT--TTCCHHHHH--HHHHHHHHHC-------BTTBEEEEEC
T ss_pred hccchHHHHHHHHHHHHhcCCCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHHh-------CCCCEEEEEe
Confidence 499999998877544 4566788 555555 677754322 2334443321 2344599999
Q ss_pred ch-hHHccccEEEEE
Q 015952 279 HG-DLLSLTDRARIR 292 (397)
Q Consensus 279 H~-~~~~~aDrI~v~ 292 (397)
|+ .++..||+++.|
T Consensus 394 H~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 394 LKNTMFEKSDALVGV 408 (427)
T ss_dssp SCHHHHTTCSEEEEE
T ss_pred CCHHHHHhcccEEEE
Confidence 95 899999998543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=6.5e-07 Score=76.09 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++.++++.+| +++|+|||||||||++.+|.-++.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 77788888876 999999999999999999986554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00012 Score=66.34 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=23.8
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
+|++++ +.+.++.|.|||.|||||+||.|+
T Consensus 33 Ndi~l~-~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 33 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence 445554 345789999999999999999985
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.59 E-value=0.00013 Score=65.68 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.1
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
|+++. ++++.|.|||.+||||+||.++
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred eEEeC-CcEEEEECCCccccchhhhhhH
Confidence 44444 3589999999999999999875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.4e-05 Score=66.69 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++|||||||++.|..-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998665
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=2e-05 Score=67.74 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.++.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987665
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.47 E-value=2.8e-05 Score=70.33 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i 141 (397)
+|.+++++|+||+|||||+|.|.|-.. -..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-----~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-----hhccCccc
Confidence 589999999999999999999988665 55576653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.45 E-value=3.1e-05 Score=64.81 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.|+++.|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999987654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.40 E-value=3.9e-05 Score=63.93 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.1
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|-++.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999997664
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=1.9e-05 Score=66.08 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEEC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~ 142 (397)
.+.|+||+|||||||++.++..+. ...+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~-----~~~~~v~~~ 35 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK-----SSGVPVDGF 35 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-----HTTCCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-----HCCCEEEEE
Confidence 478999999999999999999988 555555443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=5.4e-05 Score=63.18 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+.++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999988664
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.27 E-value=4.8e-05 Score=64.13 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|++|||||||++.|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998888776
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.24 E-value=6.7e-05 Score=62.57 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=22.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..++|+||+|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=3.2e-05 Score=70.16 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i 141 (397)
+|.+++++|+||+|||||+|.|.|-.. -..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-----~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-----hhhccccc
Confidence 588999999999999999999998665 55677763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=9.6e-05 Score=65.42 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.++.|+||||||||||++.|.--.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999876554
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.16 E-value=0.0001 Score=61.19 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999876
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.15 E-value=0.00011 Score=61.25 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|-.++|.||+||||||+.+.|+--+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999987554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.14 E-value=0.00013 Score=69.36 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=23.3
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
++++..+.+++|+|||||||||++.+|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444656699999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00011 Score=59.90 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999988665
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.07 E-value=0.00011 Score=61.51 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|.|++||||||+++.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988776
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.06 E-value=0.00013 Score=59.64 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998743
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.06 E-value=0.00012 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987766
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.03 E-value=0.00014 Score=60.38 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++|+||+||||||+.+.|+--+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.02 E-value=0.00014 Score=59.92 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998665
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00011 Score=62.40 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999987654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.98 E-value=0.00046 Score=62.41 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=27.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
|+++..-+.+|+++.|.|++|+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 666655589999999999999999999877763
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.90 E-value=0.00019 Score=61.74 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||+|.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.00026 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|+.|+|||||+|.|.|-..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.84 E-value=0.00023 Score=60.14 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.00026 Score=60.96 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+||||||||||++.|..-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876554
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0003 Score=59.09 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+|+|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.80 E-value=0.00018 Score=61.20 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
|||+|++++|||||+|.|.|-.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998743
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.00029 Score=60.59 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|||||||+|.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.78 E-value=0.0003 Score=61.78 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+||.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999976443
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.77 E-value=0.00033 Score=60.10 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+..+++|+||.||||||+.+.|+--+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998644
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.76 E-value=0.00033 Score=59.28 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|+|++|+|||||+|.|.|-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.76 E-value=0.0003 Score=57.45 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998763
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.0003 Score=57.17 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+=.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998743
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.75 E-value=0.00031 Score=57.64 Aligned_cols=21 Identities=29% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++|||.+|||||||++.+.+=
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999774
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00043 Score=58.35 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=24.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
|++|+++.|.||+|||||||+..++.-
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999999877653
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00039 Score=59.79 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|+||||+|||||++.|..-.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999886544
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00037 Score=60.73 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999977665
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.68 E-value=0.00038 Score=60.23 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+||||||||||++.|.-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.003 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=21.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.+|+++.|.|++|+|||||+-.|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999877654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00046 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
=.++|+|+.|+|||||+|.|.|--.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3589999999999999999998643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.61 E-value=0.00038 Score=58.01 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|||++|||||||++.+.+=.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999997743
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.00057 Score=58.67 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=23.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++-.++.|+||.||||||+.+.|+.-+.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999987554
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.00036 Score=59.12 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+||+|.+|+|||||+|.|.|-..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~~ 26 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAHP 26 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 89999999999999999988543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.55 E-value=0.00054 Score=57.49 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999987665
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00055 Score=57.91 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+||+|+.|+|||||+|.|.|-.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998743
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.53 E-value=0.00052 Score=57.82 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+|++||||||+.+.++--+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999986554
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.51 E-value=0.00074 Score=57.66 Aligned_cols=25 Identities=36% Similarity=0.764 Sum_probs=22.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++|=.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677788999999999999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.49 E-value=0.00046 Score=57.78 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998876
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.48 E-value=0.00051 Score=59.09 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=24.7
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++.++.|+||.||||||+.+.|+--+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999986543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.45 E-value=0.00066 Score=56.86 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+|++||||||+.+.|+.-+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999987665
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.39 E-value=0.00071 Score=56.16 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|||||||++.+.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 378999999999999999988543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.38 E-value=0.00069 Score=57.89 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+||.||||||+.+.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999975443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00085 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|+||.||||||..+.|+--+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999986443
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00037 Score=58.33 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.-.++|+|++++|||||+|.|.|-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3459999999999999999998854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.33 E-value=0.00078 Score=59.95 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||.|||||||.+.|++-+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.31 E-value=0.00089 Score=56.26 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+||.||||||+.+.|+--+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999976443
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.0011 Score=56.58 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++-+++.++|++||||||+.+.++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667999999999999999998743
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.28 E-value=0.0015 Score=54.31 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++++|++|||||||++.+.+=
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.27 E-value=0.0011 Score=56.26 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+||+|...||||||+|.|.|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.26 E-value=0.0011 Score=56.74 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.++|.+|||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.25 E-value=0.001 Score=57.71 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|-||+||||||+.+.|+--+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999999987554
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.25 E-value=0.00093 Score=55.69 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999884
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.22 E-value=0.00087 Score=57.27 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+++|-|+.||||||+++.|...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44899999999999999999987664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.00034 Score=57.73 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-++|+|++|+|||||+|.|.|-.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0012 Score=56.86 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.||.||||||+.+.|+--+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999985443
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.15 E-value=0.001 Score=60.34 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.14 E-value=0.0012 Score=56.43 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
++||.|++||||||+.+.+.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.10 E-value=0.0014 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999986554
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.0014 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.00099 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998775
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0015 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++|+++.|.||+|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999987753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0015 Score=61.22 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++||-|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 799999999999999999998876
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0024 Score=53.11 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++++|++|+|||||++.+.+=
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988763
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.99 E-value=0.0016 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+||.||||||+.+.|+--+.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999975443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.97 E-value=0.0014 Score=61.79 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||.|||||||+|.|.+.++
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcc
Confidence 34489999999999999999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.97 E-value=0.0017 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+.++.|.||.|+|||||++.++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999876543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=54.83 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+||.||||||..+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999985443
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0033 Score=52.41 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=23.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I 139 (397)
.++|+|.+|||||||++.+.+=.......|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 48899999999999999775422112223666544
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0017 Score=54.32 Aligned_cols=20 Identities=35% Similarity=0.765 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|++|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998865
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0019 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987665
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.91 E-value=0.002 Score=56.95 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+++++||+|+||||.+==|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998777776555
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.89 E-value=0.0028 Score=52.84 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.004 Score=51.70 Aligned_cols=20 Identities=50% Similarity=0.689 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0029 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0022 Score=56.30 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=25.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|-+++|-|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999988765
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.0023 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||+|+||||++++|+.-+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998665
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.85 E-value=0.0016 Score=54.38 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999866
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.0033 Score=52.09 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.80 E-value=0.0025 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++|-++-|.|.||||||||.+.|.--+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999997543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0022 Score=53.85 Aligned_cols=20 Identities=45% Similarity=0.878 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
+++||+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.74 E-value=0.0023 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|.||+|+||||++++|+..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.0024 Score=55.53 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
++||.|+.||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0028 Score=55.35 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.7
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
|++|.++.|.||+|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999887764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0058 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.67 E-value=0.0056 Score=51.60 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|.+|||||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0068 Score=50.25 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
.++++|..|+|||||++.+.+=.......|+-|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 478999999999999997665332222335555
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0029 Score=53.47 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|+.|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999999875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.003 Score=55.42 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999987776
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0053 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999887754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0028 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++|||||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.59 E-value=0.003 Score=55.42 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+.||.|+||||+.++|+.-+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999998776
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.59 E-value=0.0029 Score=54.40 Aligned_cols=24 Identities=42% Similarity=0.739 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+||.||||||+.+.|+--+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHC
Confidence 577999999999999999986443
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.59 E-value=0.0032 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+||.||||||+.+.|+--+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999986543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.58 E-value=0.0027 Score=59.02 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+.++||+|||||+|.|+|+..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3456899999999999999998765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.0032 Score=52.20 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0021 Score=60.67 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-++||.||.|||||||++.+...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987766
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.57 E-value=0.0031 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999999987553
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.57 E-value=0.0032 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++|+++.|.|++|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.56 E-value=0.0034 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.2
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I 123 (397)
-+++|+++.|.|++|+|||||+.-+
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 3799999999999999999998543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.003 Score=55.13 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+.|.||+|+||||++++++.-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.54 E-value=0.0034 Score=54.98 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+++|.++.|.||+|||||||+.-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998766543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.51 E-value=0.0033 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|+|.+|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0037 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+.|.||+|||||+|++.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3478999999999999999998665
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0034 Score=52.36 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|+|++|+|||||++.+.+-..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 78999999999999999988544
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.48 E-value=0.0031 Score=55.49 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+.||.|+||||+.+++++-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998665
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0031 Score=52.60 Aligned_cols=20 Identities=45% Similarity=0.855 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|+.|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0032 Score=52.01 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++|+|..|||||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0074 Score=50.14 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=22.9
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
++|||++|+|||||++.+.+=.-++.+.|+-|
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 78999999999999999876332222335544
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.0038 Score=51.47 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0054 Score=52.34 Aligned_cols=20 Identities=60% Similarity=0.845 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|+.|||||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.33 E-value=0.0039 Score=51.75 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|.+|+|||||++.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0049 Score=51.49 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++|||||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0043 Score=53.99 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0089 Score=49.60 Aligned_cols=34 Identities=35% Similarity=0.326 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccE
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~ 138 (397)
.++++|..|+|||||++.+.+-..+....|+.|.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~ 41 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 41 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCccccccccc
Confidence 3689999999999999998743322222344443
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0039 Score=51.68 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0034 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.+++++||+|+||||.+--|+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999998877776555
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0045 Score=51.81 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++|..|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 78999999999999999987643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.24 E-value=0.0025 Score=53.68 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999998754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.23 E-value=0.006 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999998876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0044 Score=51.41 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|.+|||||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.21 E-value=0.0045 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++||+|...||||||++.|.+-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999998753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0045 Score=51.96 Aligned_cols=20 Identities=50% Similarity=0.835 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.0041 Score=52.60 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
.+.|+|.+|+|||||++.+. +... ..||-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~--~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHG--QDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHS--CCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCC--CCCeee
Confidence 47899999999999999994 3332 237877
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.16 E-value=0.0043 Score=55.79 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+.|.||.|||||+|.+.|+.-..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 477999999999999999998654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.15 E-value=0.0052 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
...+++++||+|+||||.+--|+-.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999998887876665
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.0043 Score=55.00 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=21.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+-.+++++||+|+||||.+=-|+-.+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999998766665444
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.12 E-value=0.011 Score=49.10 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|.+|||||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.12 E-value=0.0024 Score=59.21 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++||.|+|||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999988776
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.05 E-value=0.011 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0049 Score=51.56 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.02 E-value=0.0096 Score=51.18 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=25.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
++..-+.+ .|.-+.|.||||+|||||.-.+.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 55577777 58889999999999999987653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0054 Score=51.73 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.99 E-value=0.0056 Score=55.58 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+...-+.|.||+|||||+|++.+++-+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3344588999999999999999999776
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0052 Score=51.24 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.0058 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|.||+|+||||++++++.-+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999987554
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.91 E-value=0.0067 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|-|.-||||||+++.|..-+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987665
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.90 E-value=0.0058 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+.||.|||||+|.+.|+....
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 67999999999999999998654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.86 E-value=0.004 Score=51.99 Aligned_cols=21 Identities=19% Similarity=0.605 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.+.++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.82 E-value=0.0084 Score=50.62 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.2
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..++|.+++|-|+=|||||||.|.++.-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 347899999999999999999999986554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.71 E-value=0.0071 Score=53.40 Aligned_cols=28 Identities=18% Similarity=0.526 Sum_probs=18.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+...+++++||+|+||||.+=-|+-.+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999998777775554
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0073 Score=50.16 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.70 E-value=0.0099 Score=49.56 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I 139 (397)
.+.|||..|+|||||++.+..-.. |+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-----CCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-----CCccEE
Confidence 368999999999999999876656 776644
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.0043 Score=51.85 Aligned_cols=20 Identities=40% Similarity=0.755 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987644
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.67 E-value=0.0047 Score=51.65 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=8.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.0063 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+.|.||.|+||||++++++.-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.016 Score=47.82 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|.+|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.65 E-value=0.015 Score=49.81 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=24.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
|+..-+.+. |.-+.|.|+||+|||||.-.+.
T Consensus 5 lH~~~v~~~-g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 5 MHGVLVDIY-GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEET-TEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence 555566654 7789999999999999886653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.62 E-value=0.015 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999986644
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.57 E-value=0.23 Score=44.49 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
..+++|+|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998854
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.015 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|++|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0088 Score=50.49 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++++|.+|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.48 E-value=0.0088 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+++|.||-|||||||+..+...+.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 34799999999999999999987554
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0092 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|.||.|+||||++++++.-+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 66999999999999999987543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.0084 Score=50.68 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999988653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.42 E-value=0.011 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|.||+|||||+|++.++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999999665
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.34 E-value=0.0084 Score=58.65 Aligned_cols=42 Identities=29% Similarity=0.548 Sum_probs=28.4
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-CcEEEEecC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-GDGTYFLQE 154 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-~~ig~v~Q~ 154 (397)
+.+|||+|||||-|.|.|++++. +|. +.++... -..|||-.+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~----VPF---v~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN----APF---IKVEATKFTEVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT----CCE---EEEEGGGGC----CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCE---EEeecceeeecceeecc
Confidence 77999999999999999999886 253 4555441 345666554
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.011 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876544
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.0094 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-+|+|+||-++|||||||.+.|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999999854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.19 E-value=0.008 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.013 Score=49.06 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=23.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
+.|+|..|+|||||++.+..-..+ ..||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~--~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSS--CCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceee
Confidence 689999999999999998654432 236655
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.08 E-value=0.014 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998664
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.01 E-value=0.011 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999965
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.90 E-value=0.013 Score=51.20 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHH-cccCCCCCCCccc
Q 015952 105 SLLLIGPKGSGKSSLVNRIS-KVFENDKFASERA 137 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~-Gl~~~~~~~p~~G 137 (397)
.+.|+|.+|+|||||++.+. +-.. ||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~-----pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVV-----LTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-----CCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC-----CCCC
Confidence 47899999999999999874 3222 7766
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.88 E-value=0.023 Score=48.30 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=23.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I 123 (397)
|+..-+.+. |.-+.|.|+||+|||||.-.+
T Consensus 6 ~H~~~v~~~-g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 6 LHGVLVDVY-GVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp EESEEEEET-TEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEeCCCCCHHHHHHHH
Confidence 444555554 788999999999999988554
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.87 E-value=0.015 Score=53.74 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=27.4
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|-+|+..+|+|++|+|||||+..|+.-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999887443
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.86 E-value=0.013 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+++||.-.||||||+|.|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999965
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.76 E-value=0.016 Score=55.58 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++-++.+.||.||||||++..+...+.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 455899999999999999999988654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.73 E-value=0.0085 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+.|+||.|+|||||+|.++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999997
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.68 E-value=0.018 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999843
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.021 Score=51.78 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=25.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-|+.|.++-|.||+|||||||+-.++.-..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 578999999999999999999877665544
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.51 E-value=0.016 Score=55.05 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=27.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++.++.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 558889999999999999999999999887
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.023 Score=52.63 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.++||+|+|||.|.+.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 3578999999999999999999875
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.06 E-value=0.023 Score=51.75 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-++.|.++-|.||+|||||||+-.++....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence 578999999999999999999755555443
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.99 E-value=0.021 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+||||-.-+|||||+|.|+|.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.87 E-value=0.024 Score=51.91 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=30.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCC---C----CCCcccEEEECce
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFEND---K----FASERAQVTYNSS 144 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~---~----~~p~~G~I~i~G~ 144 (397)
.+||||-..||||||+|.+++--.+. + ..|.-|.|.+...
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~ 58 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 58 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecccc
Confidence 49999999999999999999864311 1 1356788887654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.85 E-value=0.022 Score=51.86 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=26.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-|+.|.++-|.||+|||||||+-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 568899999999999999999988877655
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.025 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|=|+-||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997665
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.45 E-value=0.03 Score=48.51 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|.-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999953
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.41 E-value=0.037 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.=-+||+|.-.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333589999999999999999998665
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.24 E-value=0.03 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~ 124 (397)
-++|+|+.|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999983
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.033 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
++.|.|.=|||||||++-+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999998876
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.36 E-value=0.044 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHH---HcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRI---SKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I---~Gl~~ 128 (397)
-+||+|+.|||||||+..| +|...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 4799999999999999998 45544
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.23 E-value=0.052 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+-|.||+|||||-|+++++--..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999976544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.18 E-value=0.048 Score=49.84 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.2
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
=+.+-+|+..+|+|++|+|||||+..|+.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 35789999999999999999999776654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.056 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 467889999999999999987654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.051 Score=51.41 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=25.5
Q ss_pred cEEEEECCCCCcHHHHHH-HHHcccCCCCCCCcccEEEECce
Q 015952 104 TSLLLIGPKGSGKSSLVN-RISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~-~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.-+.|+|++|||||++++ +|..+.. ...+-|.+|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~-----~g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL-----RGDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH-----TTCEEEEEEET
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh-----CCCCEEEEeCC
Confidence 358999999999999986 4555555 34455556654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.60 E-value=0.057 Score=51.10 Aligned_cols=27 Identities=41% Similarity=0.813 Sum_probs=22.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++. +.++||+|||||-|.|.|+.+..
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 4554 55789999999999999998765
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.44 E-value=0.063 Score=48.37 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=27.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCC------CCCcccEEEECc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDK------FASERAQVTYNS 143 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~------~~p~~G~I~i~G 143 (397)
.+||||-.-+|||||++.|++.-.... ..|.-|.|.+..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 589999999999999999997643211 135568876543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.071 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.+.||.|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 488999999999999999998664
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.34 E-value=0.062 Score=50.10 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=23.8
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
...++| ++.++||.|||||.|.+.|++-..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 445555 566689999999999999998753
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.073 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+.||||+|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999987655
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.68 E-value=0.088 Score=48.64 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.++||+|+|||.|.+.|+-.+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHhc
Confidence 577999999999999999998763
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.1 Score=45.16 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+.||||+|.|||+++.-++..+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 367999999999999999987654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.16 E-value=0.095 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHccc
Q 015952 106 LLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+|++|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998754
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.41 E-value=0.091 Score=47.85 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.2
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
=+.|-+|+..+|+|++|+|||+|+..+.--..
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 35889999999999999999999976544333
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.34 E-value=0.19 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|=|+-||||||+++.|..-+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 467889999999999999998776
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=0.13 Score=47.70 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.0
Q ss_pred cCCcEEEEECCCCCcHHHHH
Q 015952 101 PKTTSLLLIGPKGSGKSSLV 120 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl 120 (397)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 56899999999999999976
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.19 E-value=0.13 Score=47.68 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.2
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 015952 102 KTTSLLLIGPKGSGKSSLV 120 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl 120 (397)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5899999999999999975
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=87.11 E-value=0.15 Score=44.30 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=26.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++--++.|.||.++|||++...|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 47778999999999999999999999876
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.23 E-value=0.11 Score=47.56 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
=+.+-+|+..+|+|++|+|||||+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 4688999999999999999999976443
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.19 E-value=0.17 Score=43.90 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 015952 106 LLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~ 124 (397)
++++|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999999883
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.74 E-value=0.19 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.2
Q ss_pred cCCcEEEEECCCCCcHHHHH
Q 015952 101 PKTTSLLLIGPKGSGKSSLV 120 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl 120 (397)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36889999999999999997
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.67 E-value=0.18 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478889999999999999987554
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.65 E-value=0.09 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.8
Q ss_pred EcCCcEEEEECCCCCcHHHHH
Q 015952 100 VPKTTSLLLIGPKGSGKSSLV 120 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl 120 (397)
+++|+.+.|.+|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 367999999999999999544
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.55 E-value=0.23 Score=44.64 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..++--++.|.||-++||||++++|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 446677999999999999999999999875
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.31 E-value=0.19 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|=|+=||||||+++.|.--+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478889999999999999998776
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=85.10 E-value=0.22 Score=43.45 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 015952 106 LLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999953
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.60 E-value=0.17 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.9
Q ss_pred EEEEECCCCCcHHHH-HHHHHccc
Q 015952 105 SLLLIGPKGSGKSSL-VNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTL-l~~I~Gl~ 127 (397)
-+.|+|+-||||||. +..+.-++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHH
Confidence 467999999999975 55555444
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=84.45 E-value=0.18 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=16.1
Q ss_pred EEEEECCCCCcHHHH-HHHHHccc
Q 015952 105 SLLLIGPKGSGKSSL-VNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTL-l~~I~Gl~ 127 (397)
.+.|.|+-||||||. +..++-++
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHH
Confidence 466889999999965 44444443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.07 E-value=0.34 Score=43.23 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+-.+++||-.-+|||||+|.|.|-..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 344699999999999999999999654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=83.34 E-value=0.21 Score=44.19 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.3
Q ss_pred CCCcCCCCCCcchhhhhHHHHHHHHH
Q 015952 24 DFDIPLLSGDDEGSRDSWDSLVDQRR 49 (397)
Q Consensus 24 ~~d~~~~~~~~~~~~~~~~~~~~~~~ 49 (397)
=|||||++||+.....+++.+.+++.
T Consensus 162 llDEPt~gLD~~~~~~i~~~i~~l~~ 187 (240)
T d1ji0a_ 162 MMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999998888877654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.29 E-value=0.26 Score=42.27 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=21.7
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHH
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQR 48 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~ 48 (397)
+==|||||+++|++....+++.+.+..
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~ 172 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEIL 172 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHH
Confidence 445899999999998888877776654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.06 E-value=0.37 Score=39.00 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHH-HHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSS-LVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKST-Ll~~I~Gl~~ 128 (397)
|.+..++||=.||||| |++.+..+..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~ 28 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEY 28 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence 6788899999999999 8888766543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.79 E-value=0.23 Score=43.82 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=22.4
Q ss_pred CCCCCcCCCCCCcchhhhhHHHHHHHH
Q 015952 22 VDDFDIPLLSGDDEGSRDSWDSLVDQR 48 (397)
Q Consensus 22 ~~~~d~~~~~~~~~~~~~~~~~~~~~~ 48 (397)
+==|||||++||+......++.+.+..
T Consensus 166 lLllDEPTs~LD~~~~~~i~~~l~~l~ 192 (230)
T d1l2ta_ 166 IILADQPTGALDSKTGEKIMQLLKKLN 192 (230)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHH
Confidence 334899999999999999888877654
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.73 E-value=0.39 Score=38.20 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHH-HcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRI-SKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I-~Gl~~ 128 (397)
++|=++-+.|-+|||||||.+.+ ..|.+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 46778889999999999999998 45544
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.47 E-value=0.31 Score=42.90 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 015952 106 LLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~ 124 (397)
++++|..++|||||+..|.
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7899999999999998884
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.25 E-value=0.28 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHH---HcccC
Q 015952 106 LLLIGPKGSGKSSLVNRI---SKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I---~Gl~~ 128 (397)
+||+|.-|+|||||+..| +|...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 899999999999999999 46554
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.24 E-value=0.26 Score=46.82 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
..||||+|+|||+++.-++--
T Consensus 46 ~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHH
Confidence 578999999999999866643
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.77 E-value=0.28 Score=43.52 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=23.0
Q ss_pred CCCCcCCCCCCcchhhhhHHHHHHHHH
Q 015952 23 DDFDIPLLSGDDEGSRDSWDSLVDQRR 49 (397)
Q Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~~~ 49 (397)
==|||||++||+......++.+.+..+
T Consensus 158 LllDEPts~LD~~~~~~i~~ll~~l~~ 184 (239)
T d1v43a3 158 LLMDEPLSNLDAKLRVAMRAEIKKLQQ 184 (239)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 348999999999999998888887654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=81.19 E-value=0.31 Score=38.15 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=17.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHH
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I 123 (397)
+.+...|.+|.|||||+++-.+
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHH
Confidence 4566788999999999987443
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.01 E-value=0.29 Score=43.21 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHH
Q 015952 106 LLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I 123 (397)
++++|.-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 799999999999999998
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=80.99 E-value=0.32 Score=42.88 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCCcCCCCCCcchhhhhHHHHHHHHH
Q 015952 24 DFDIPLLSGDDEGSRDSWDSLVDQRR 49 (397)
Q Consensus 24 ~~d~~~~~~~~~~~~~~~~~~~~~~~ 49 (397)
=|||||++||+.....+++.+.+..+
T Consensus 150 llDEPts~LD~~~~~~i~~~l~~l~~ 175 (229)
T d3d31a2 150 LLDEPLSALDPRTQENAREMLSVLHK 175 (229)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999988888877654
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.65 E-value=0.65 Score=43.30 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=17.8
Q ss_pred CcEEEEECCCCCcHHHHHHHH
Q 015952 103 TTSLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I 123 (397)
+.++.|.||-|+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 569999999999999987543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=80.54 E-value=0.24 Score=43.79 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=21.8
Q ss_pred EcCCcEEEEECCCCCcHHH--HHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSS--LVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKST--Ll~~I~Gl~~ 128 (397)
+.+|+.+.|.+|.|||||+ |..++.....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~ 36 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK 36 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999997 3455544443
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=80.26 E-value=0.34 Score=42.97 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.0
Q ss_pred CCCcCCCCCCcchhhhhHHHHHHHHHH
Q 015952 24 DFDIPLLSGDDEGSRDSWDSLVDQRRR 50 (397)
Q Consensus 24 ~~d~~~~~~~~~~~~~~~~~~~~~~~~ 50 (397)
=|||||++||+......++.+.+..+.
T Consensus 162 llDEPt~~LD~~~~~~i~~~l~~l~~~ 188 (240)
T d1g2912 162 LMDEPLSNLDAKLRVRMRAELKKLQRQ 188 (240)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcccCHHHHHHHHHHHHHHHhc
Confidence 489999999999999988888876543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.24 E-value=0.52 Score=40.11 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.-+.+-||+|+||||+.+.++..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 355788999999999999999988654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=80.17 E-value=0.33 Score=42.88 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=21.1
Q ss_pred CCCCcCCCCCCcchhhhhHHHHHHHH
Q 015952 23 DDFDIPLLSGDDEGSRDSWDSLVDQR 48 (397)
Q Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~~ 48 (397)
==|||||++||+...+.+++.+.+.+
T Consensus 155 llLDEPt~gLD~~~~~~i~~~i~~~~ 180 (238)
T d1vpla_ 155 AILDEPTSGLDVLNAREVRKILKQAS 180 (238)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 35899999999998888877776554
|